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Muhorakeye MC, Namikoye ES, Khamis FM, Wanjohi W, Akutse KS. Biostimulant and antagonistic potential of endophytic fungi against fusarium wilt pathogen of tomato Fusarium oxysporum f. sp. lycopersici. Sci Rep 2024; 14:15365. [PMID: 38965302 PMCID: PMC11224277 DOI: 10.1038/s41598-024-66101-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 06/27/2024] [Indexed: 07/06/2024] Open
Abstract
Endophytic fungal-based biopesticides are sustainable and ecologically-friendly biocontrol agents of several pests and diseases. However, their potential in managing tomato fusarium wilt disease (FWD) remains unexploited. This study therefore evaluated effectiveness of nine fungal isolates against tomato fusarium wilt pathogen, Fusarium oxysporum f. sp. lycopersici (FOL) in vitro using dual culture and co-culture assays. The efficacy of three potent endophytes that inhibited the pathogen in vitro was assessed against FWD incidence, severity, and ability to enhance growth and yield of tomatoes in planta. The ability of endophytically-colonized tomato (Solanum lycopersicum L.) plants to systemically defend themselves upon exposure to FOL were also assessed through defence genes expression using qPCR. In vitro assays showed that endophytes inhibited and suppressed FOL mycelial growth better than entomopathogenic fungi (EPF). Endophytes Trichoderma asperellum M2RT4, Hypocrea lixii F3ST1, Trichoderma harzianum KF2R41, and Trichoderma atroviride ICIPE 710 had the highest (68.84-99.61%) suppression and FOL radial growth inhibition rates compared to EPF which exhibited lowest (27.05-40.63%) inhibition rates. Endophytes T. asperellum M2RT4, H. lixii F3ST1 and T. harzianum KF2R41 colonized all tomato plant parts. During the in planta experiment, endophytically-colonized and FOL-infected tomato plants showed significant reduction of FWD incidence and severity compared to non-inoculated plants. In addition, these endophytes contributed to improved growth promotion parameters and yield. Moreover, there was significantly higher expression of tomato defence genes in T. asperellum M2RT4 colonized than in un-inoculated tomato plants. These findings demonstrated that H. lixii F3ST1 and T. asperellum M2RT4 are effective biocontrol agents against FWD and could sustainably mitigate tomato yield losses associated with fusarium wilt.
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Affiliation(s)
- Marie Cecile Muhorakeye
- International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya
- Department of Agricultural Science and Technology, Kenyatta University, P.O. Box 43844-00100, Nairobi, Kenya
- Rwanda Polytechnic, Integrated Polytechnic Regional College (IPRC) Musanze, P.O. Box 226, Musanze, Rwanda
| | - Everlyne Samita Namikoye
- Department of Agricultural Science and Technology, Kenyatta University, P.O. Box 43844-00100, Nairobi, Kenya
| | - Fathiya M Khamis
- International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya
| | - Waceke Wanjohi
- Department of Agricultural Science and Technology, Kenyatta University, P.O. Box 43844-00100, Nairobi, Kenya
| | - Komivi S Akutse
- International Centre of Insect Physiology and Ecology (icipe), P.O. Box 30772-00100, Nairobi, Kenya.
- Unit of Environmental Sciences and Management, North-West University, Private Bag X6001, Potchefstroom, 2520, South Africa.
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Grayton Q, Purvis ME, Schoenfisch MH. Antimicrobial Effects of Nitric Oxide against Plant Pathogens. ACS OMEGA 2024; 9:26066-26074. [PMID: 38911785 PMCID: PMC11190915 DOI: 10.1021/acsomega.4c01454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 05/10/2024] [Accepted: 05/22/2024] [Indexed: 06/25/2024]
Abstract
Pathogen infection represents the greatest challenge to agricultural crop production, resulting in significant economic loss. Conventional pesticides are used to control such infection but can result in antimicrobial resistance and detrimental effects on the plant, environment, and human health. Due to nitric oxide's (NO) endogenous roles in plant immune responses, treatment with exogenous NO represents an attractive nonpesticide approach for eradicating plant pathogens. In this work, the antimicrobial activity of small-molecule NO donors of varying NO-release kinetics was evaluated against Pseudomonas syringae and Botrytis cinerea, two prevalent plant pathogens. Intermediate NO-release kinetics proved to be most effective at eradicating these pathogens in vitro. A selected NO donor (methyl tris diazeniumdiolate; MD3) was capable of treating both bacterial infection of plant leaves and fungal infection of tomato fruit without exerting toxicity to earthworms. Taken together, these results demonstrate the potential for utilizing NO as a broad-spectrum, environmentally safe pesticide and may guide development of other NO donors for such application.
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Affiliation(s)
- Quincy
E. Grayton
- Department
of Chemistry and Eshelman School of Pharmacy, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Margery E. Purvis
- Department
of Chemistry and Eshelman School of Pharmacy, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
| | - Mark H. Schoenfisch
- Department
of Chemistry and Eshelman School of Pharmacy, University
of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, United States
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Bouaicha O, Maver M, Mimmo T, Cesco S, Borruso L. Microplastic influences the ménage à trois among the plant, a fungal pathogen, and a plant growth-promoting fungal species. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2024; 279:116518. [PMID: 38820874 DOI: 10.1016/j.ecoenv.2024.116518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 05/14/2024] [Accepted: 05/26/2024] [Indexed: 06/02/2024]
Abstract
Microplastics (MP) can influence a plethora of fungal species within the rhizosphere. Nevertheless, there are few studies on the direct impacts of MPs on soil fungi and their intricate interplay with plants. Here, we investigated the impact of polyethylene microspheres (PEMS) on the ecological interactions between Fusarium solani, a plant pathogenic fungus, and Trichoderma viride, a fungal plant growth promotor, within the rhizosphere of Solanum lycopersicum (tomato). Spores of F. solani and T. viride were pre-incubated with PEMS at two concentrations, 100 and 1000 mg L-1. Mycelium growth, sporulation, spore germination, and elongation were evaluated. Tomato seeds were exposed to fungal spore suspensions treated with PEMS, and plant development was subsequently assessed after 4 days. The results showed that PEMS significantly enhanced the sporulation (106.0 % and 70.1 %) but compromised the spore germination (up to 27.3 % and 32.2 %) and radial growth (up to -5.2% and -21.7 %) of F. solani and T. viride, respectively. Furthermore, the 100 and 1000 mg L-1 concentrations of PEMS significantly (p<0.05) enhanced the mycelium density of T. viride (9.74 % and 22.30 %, respectively), and impaired the germ-tube elongation of F. solani after 4 h (16.16 % and 11.85 %, respectively) and 8 h (4 % and 17.10 %, respectively). In addition, PEMS amplified the pathogenicity of F. solani and boosted the bio-enhancement effect of T. viride on tomato root growth. Further, PEMS enhanced the bio-fungicidal effect of T. viride toward F. solani (p<0.05). In summary, PEMS had varying effects on F. solani and T. viride, impacting their interactions and influencing their relationship with tomato plants. It intensified the beneficial effects of T. viride and increased the aggressiveness of F. solani. This study highlights concerns regarding the effects of MPs on fungal interactions in the rhizosphere, which are essential for crop soil colonization and resource utilization.
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Affiliation(s)
- Oussama Bouaicha
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Bolzano, Italy.
| | - Mauro Maver
- Competence Centre for Plant Health, Free University of Bozen-Bolzano, Bolzano, Italy
| | - Tanja Mimmo
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Bolzano, Italy; Competence Centre for Plant Health, Free University of Bozen-Bolzano, Bolzano, Italy
| | - Stefano Cesco
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Bolzano, Italy
| | - Luigimaria Borruso
- Faculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Bolzano, Italy.
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Meshram S, Adhikari TB. Microbiome-Mediated Strategies to Manage Major Soil-Borne Diseases of Tomato. PLANTS (BASEL, SWITZERLAND) 2024; 13:364. [PMID: 38337897 PMCID: PMC10856849 DOI: 10.3390/plants13030364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 01/23/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024]
Abstract
The tomato (Solanum lycopersicum L.) is consumed globally as a fresh vegetable due to its high nutritional value and antioxidant properties. However, soil-borne diseases can severely limit tomato production. These diseases, such as bacterial wilt (BW), Fusarium wilt (FW), Verticillium wilt (VW), and root-knot nematodes (RKN), can significantly reduce the yield and quality of tomatoes. Using agrochemicals to combat these diseases can lead to chemical residues, pesticide resistance, and environmental pollution. Unfortunately, resistant varieties are not yet available. Therefore, we must find alternative strategies to protect tomatoes from these soil-borne diseases. One of the most promising solutions is harnessing microbial communities that can suppress disease and promote plant growth and immunity. Recent omics technologies and next-generation sequencing advances can help us develop microbiome-based strategies to mitigate tomato soil-borne diseases. This review emphasizes the importance of interdisciplinary approaches to understanding the utilization of beneficial microbiomes to mitigate soil-borne diseases and improve crop productivity.
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Affiliation(s)
- Shweta Meshram
- Department of Plant Pathology, Lovely Professional University, Phagwara 144402, India;
| | - Tika B. Adhikari
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
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Devika PP, Alex S, Soni KB, Sindura KP, Ayisha R, Manju RV. Nano-PCR for the early detection of tomato leaf curl virus. 3 Biotech 2024; 14:5. [PMID: 38074290 PMCID: PMC10700262 DOI: 10.1007/s13205-023-03842-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Accepted: 11/02/2023] [Indexed: 01/19/2024] Open
Abstract
Nano-PCR is a potential tool for the early detection of plant viruses. In the current study, different concentrations of silver nanoparticles (20 nm) and magnesium oxide nanoparticles (50 nm) were included in the PCR mixture to improve the sensitivity of PCR for the detection of tomato leaf curl virus. The inclusion of nanoparticles in single or combination in PCR mixture has resulted in improvement of PCR sensitivity. Four-fold improvement was exhibited by the inclusion of 3 ng/µL silver nanoparticles, whereas the combination of silver and magnesium oxide nanoparticles (3 ng/µL and 200 ng/µL, respectively), resulted in a 4.5-fold improvement. The inclusion of 200 ng/µL of magnesium oxide nanoparticles in the PCR mixture exhibited a 7.6-fold increase in PCR sensitivity. Replacement of magnesium chloride with a combination of silver and magnesium oxide nanoparticles (3 ng/µL and 275 ng/µL, respectively) resulted in a 12-fold increase. A 13-fold improvement in PCR sensitivity was observed by the replacement of magnesium chloride in PCR buffer with 275 ng/µL of magnesium oxide nanoparticles. This could also produce detectable amplicon in PCR with a minimum of 25 cycles, resulting in a 26.5% reduction in the duration of PCR. This is the first report on the use of magnesium oxide nanoparticles in PCR for the early detection and better management of tomato leaf curl virus. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-023-03842-2.
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Affiliation(s)
- P. P. Devika
- Department of Molecular Biology and Biotechnology, College of Agriculture, Vellayani, Kerala Agricultural University, Thiruvananthapuram, Kerala 695522 India
| | - Swapna Alex
- Department of Molecular Biology and Biotechnology, College of Agriculture, Vellayani, Kerala Agricultural University, Thiruvananthapuram, Kerala 695522 India
| | - K. B. Soni
- Department of Molecular Biology and Biotechnology, College of Agriculture, Vellayani, Kerala Agricultural University, Thiruvananthapuram, Kerala 695522 India
| | - K. P. Sindura
- Department of Molecular Biology and Biotechnology, College of Agriculture, Vellayani, Kerala Agricultural University, Thiruvananthapuram, Kerala 695522 India
| | - R. Ayisha
- Department of Plant Pathology, College of Agriculture, Vellanikkara, Kerala Agricultural University, Thrissur, Kerala 680656 India
| | - R. V. Manju
- Department of Plant Physiology, College of Agriculture, Vellayani, Kerala Agricultural University, Thiruvananthapuram, Kerala 695522 India
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Xie T, Shen S, Hu R, Li W, Wang J. Screening, Identification, and Growth Promotion of Antagonistic Endophytes Associated with Chenopodium quinoa Against Quinoa Pathogens. PHYTOPATHOLOGY 2023; 113:1839-1852. [PMID: 37948615 DOI: 10.1094/phyto-11-22-0419-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]
Abstract
Fungal disease is one of the important reasons for crop yield reduction. Isolation of important endophytes with biocontrol and growth-promoting effects is of great significance for the exploitation of beneficial microbial resources and the biological control of crop fungal diseases. In this study, endophytes from roots, stems, and leaves of quinoa at different growth and development stages were isolated and purified; then the antagonistic activity and growth-promoting characteristics of antagonistic endophytes were determined. Finally, the antagonistic endophytes were identified by morphological characteristics and ITS/16S rRNA sequence analysis. Our results showed that 122 endophytic fungi and 371 endophytic bacteria were isolated from quinoa, of which three endophytic fungi and seven endophytic bacteria were screened that had inhibitory activity against quinoa pathogenic fungi. Most of the antagonistic strains could produce indole-3 acetic acid and had the ability to dissolve organic phosphorus. In addition, the bacterial suspension of endophytic bacteria had the ability to promote the seed germination and plant growth of quinoa. The endophytic fungi with antagonistic activity were identified as Penicillium raperi and P. pulvillorum; the endophytic bacteria were identified as Bacillus paralicheniformis, B. tequilensis, and B. velezensis, respectively. The strains of quinoa endophytes in this study can provide rich microbial resources and a theoretical basis for biological control of plant fungal diseases and agricultural production.
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Affiliation(s)
- Tianyan Xie
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
- Qinghai Qaidam Vocational and Technical College, Delingha 817099, Qinghai, China
| | - Shuo Shen
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Rong Hu
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Wei Li
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Jian Wang
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
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Yavarian S, Jafari P, Akbari N. Bacillus megaterium RTS1 enhances resistance of Lycopersicon esculentum to salinity stress through the improvement of antioxidant defenses. IRANIAN JOURNAL OF MICROBIOLOGY 2023; 15:685-696. [PMID: 37941883 PMCID: PMC10628074 DOI: 10.18502/ijm.v15i5.13874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
Background and Objectives Plant growth-promoting bacteria (PGPB) may reduce the negative effects of salinity stress. The aim of this study was to optimize Bacillus megaterium RTS1 and characterize the effect of the PGPB on the physiological characteristics of tomato (Lycopersicon esculentum). Materials and Methods The Central composite design (CCD) of response surface methodology (RSM) was used to optimize Bacillus megaterium RTS1 to produce maximum cell biomass and spores. Then the effect of the PGPB on the physiological characteristics of tomato (Lycopersicon esculentum), including membrane stability, leaf relative water content percentage, anthocyanin and carotenoids content, chlorophyll photosynthetic parameters, sugar and starch level, superoxide anion and antioxidant activity under salt stress conditions. The NFB medium was inoculated with 5% bacterial culture and the fermentation was carried out in a 10-lit fermenter. Results After optimization, the amount of cell biomass by the model was 9.45 log10 CFUs/mL, which showed a 1.2-fold increase compared to the non-optimized medium. Usage of bacteria under the optimal conditions of the culture medium may increase the stability of the membrane and improve the relative water content. Bacteria were able to prevent the excessive increase of anthocyanins. Oxidative stress led to an increase in the content of chlorophyll a, while causing the degradation of chlorophyll b. Bacterial inoculation led to an increase in the level of sugar and starch compared to the control. PGPB showed an increasing effect on the amount of superoxide anion production and caused a significant increase in the antioxidant activity under salinity stress conditions. Conclusion The PGPB can be a promising way to boost physiological characteristics of tomato plant under salinity stress. Also, sporulation capacity of Bacillus megaterium with high bacterial cell density in fermenter produce a sustainable product for tomato plants.
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Affiliation(s)
- Shiva Yavarian
- Department of Microbiology, Faculty of Sciences, Arak Branch, Islamic Azad University, Arak, Iran
| | - Parvaneh Jafari
- Department of Microbiology, Faculty of Sciences, Arak Branch, Islamic Azad University, Arak, Iran
| | - Neda Akbari
- Department of Microbiology, Faculty of Sciences, Arak Branch, Islamic Azad University, Arak, Iran
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Ramos ETDA, Olivares FL, da Rocha LO, da Silva RF, do Carmo MGF, Lopes MTG, Meneses CHSG, Vidal MS, Baldani JI. The Effects of Gluconacin on Bacterial Tomato Pathogens and Protection against Xanthomonas perforans, the Causal Agent of Bacterial Spot Disease. PLANTS (BASEL, SWITZERLAND) 2023; 12:3208. [PMID: 37765372 PMCID: PMC10535834 DOI: 10.3390/plants12183208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 09/01/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023]
Abstract
As agricultural practices become more sustainable, adopting more sustainable practices will become even more relevant. Searching for alternatives to chemical compounds has been the focus of numerous studies, and bacteriocins are tools with intrinsic biotechnological potential for controlling plant diseases. We continued to explore the biotechnological activity of the bacteriocin Gluconacin from Gluconacetobacter diazotrophicus, PAL5 strain, by investigating this protein's antagonism against important tomato phytopathogens and demonstrating its effectiveness in reducing bacterial spots caused by Xanthomonas perforans. In addition to this pathogen, the bacteriocin Gluconacin demonstrated bactericidal activity in vitro against Ralstonia solanacearum and Pseudomonas syringae pv. tomato, agents that cause bacterial wilt and bacterial spots, respectively. Bacterial spot control tests showed that Gluconacin reduced disease severity by more than 66%, highlighting the biotechnological value of this peptide in ecologically correct formulations.
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Affiliation(s)
- Elizabeth Teixeira de Almeida Ramos
- Programa de Pós-Graduação em Fitotecnia (PPGF), Departamento de Fitotecnia, Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, km 07, Seropédica 23890-000, RJ, Brazil; (E.T.d.A.R.); (M.G.F.d.C.)
| | - Fábio Lopes Olivares
- Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes 28013-602, RJ, Brazil; (F.L.O.); (L.O.d.R.)
| | - Letícia Oliveira da Rocha
- Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes 28013-602, RJ, Brazil; (F.L.O.); (L.O.d.R.)
| | - Rogério Freire da Silva
- Programa de Pós-Graduação em Ciências Agrárias, Centro de Ciências Biológicas e da Saúde, Departamento de Biologia, Universidade Estadual da Paraíba, Universitário, Campina Grande 58429-500, PB, Brazil; (R.F.d.S.); (C.H.S.G.M.)
| | - Margarida Goréte Ferreira do Carmo
- Programa de Pós-Graduação em Fitotecnia (PPGF), Departamento de Fitotecnia, Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, km 07, Seropédica 23890-000, RJ, Brazil; (E.T.d.A.R.); (M.G.F.d.C.)
| | - Maria Teresa Gomes Lopes
- Faculdade de Ciências Agrárias, Universidade Federal do Amazonas, Avenida Rodrigo Otávio Ramos, 3.000, Bairro Coroado, Manaus 69077-000, AM, Brazil;
| | - Carlos Henrique Salvino Gadelha Meneses
- Programa de Pós-Graduação em Ciências Agrárias, Centro de Ciências Biológicas e da Saúde, Departamento de Biologia, Universidade Estadual da Paraíba, Universitário, Campina Grande 58429-500, PB, Brazil; (R.F.d.S.); (C.H.S.G.M.)
| | - Marcia Soares Vidal
- Embrapa Agrobiologia, Rodovia BR 465, km 07, Seropédica 23891-000, RJ, Brazil;
| | - José Ivo Baldani
- Embrapa Agrobiologia, Rodovia BR 465, km 07, Seropédica 23891-000, RJ, Brazil;
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Gupta S, Pandey S, Nandi SP, Singh M. Modulation of ethylene and ROS-scavenging enzymes by multifarious plant growth-promoting endophytes in tomato (Solanum lycopersicum) plants to combat Xanthomonas -induced stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 202:107982. [PMID: 37651951 DOI: 10.1016/j.plaphy.2023.107982] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 07/26/2023] [Accepted: 08/18/2023] [Indexed: 09/02/2023]
Abstract
The purpose of the current study was to explore root endophytes- Priestia megaterium T3 and Bacillus cereus T4 from Moringa olefiera for the suppression of leaf spot disease in tomato plants challenged with Xanthomonas vesicatoria. Both strains had plant growth-stimulating characteristics including auxin production, solubilization of inorganic phosphate and zinc complexes, and production of ammonia, siderophore, as well as hydrolytic enzymes. An agar well diffusion and fluorescence viability assay have validated the antibacterial effect of the cell-free culture supernatant of strains T3 and T4. Liquid chromatography-mass spectrometry (LC-MS) profiling has identified the secondary metabolites in the cell-free supernatant of strains T3 and T4. The bio-priming of tomato seeds with a consortium of T3 and T4 strains has significantly declined ethylene (by 0.61-fold) and hydrogen peroxide (H2O2, 0.64-fold) concentration thus, maintaining a lower content of ROS-induced malondialdehyde (MDA, 0.91-fold) as compared to control counterparts. Consequently, the leaf spot disease severity was reduced by ∼70% in consortium-treated tomato plants in contrast to their pathogen-challenged control. The consortia (T3+T4) treatment has facilitated induced systemic resistance by enhancing enzymatic activities of phenylalanine ammonia-lyase (PAL), peroxidase (PO), polyphenol oxidase (PPO), catalase (CAT), and ascorbate oxidase (AO) to detoxify the excessive Xanthomonas-induced ROS accumulation in tomato plants. Conclusively, bacterial endophytes modulate X. vesicatoria-induced ROS response and ethylene levels in tomato plants. The current findings indicate that plant growth-promoting endophytic bacterial strains hold the potential to sustainably enhance plant growth and suppress bacterial leaf spot disease in tomato plants.
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Affiliation(s)
- Shikha Gupta
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India
| | - Sangeeta Pandey
- Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India.
| | - Shoma Paul Nandi
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Sector 125, Noida, Uttar Pradesh, 201313, India
| | - Monika Singh
- G.L. Bajaj Institute of Technology and Management, Greater Noida, G.B Nagar, Uttar Pradesh, 201306, India
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Pham NQA, Ngoc TH, Vo N, Vinh TQ, Thien NM, Nguyen HD, Millard AD, Tien LTT, Phuc VT, Oanh HN, Hoang HA. Biological Characterization and Genomic Analysis of Novel Phages DLDT_So2 and BHDT_So9 Against Pseudomonas solanacearum, an Infectious Agent in Tomato in Vietnam. Indian J Microbiol 2023; 63:386-394. [PMID: 37781021 PMCID: PMC10533463 DOI: 10.1007/s12088-023-01090-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 08/05/2023] [Indexed: 10/03/2023] Open
Abstract
Tomato (Solanum lycopersicum L.) is an important grown vegetable in Vietnam. Bacterial wilt caused by Pseudomonas solanacearum has been considered to be an important disease resulting in a harvest loss up to 90% and significant economic loss to farmers. In this study, two bacteriophages DLDT_So2 and BHDT_So9 specific to P. solanacearum were isolated. Morphological analysis indicated that DLDT_So2 and BHDT_So9 had podovirus morphology and were classified into Autographiviridae family. The latent period and burst size of DLDT_So2 was found to be approximately 120 min and 20.0 ± 2.4 virions per infected cell. Meanwhile, the latent period of BHDT_So9 was 140 min with a burst size of 11.5 ± 2.8 virions per infected cell. Of the 23 bacterial strains tested, the phages infected 7/11 strains of P. solanacearum and none of the other bacteria tested were susceptible to the phages. Stability of the phages at different temperatures, pHs, solvents was also investigated. The genomes of DLDT_So2 and BHDT_So9 are 41,341 bp and 41,296 bp and long with a total GC content of 63%, contains 48 and 46 predicted protein-encoding CDSs. No virulence or antibiotic resistance genes were found in the genomes, suggesting they would be useful biocontrol agents against P. solanacearum. Classification of the phage using average nucleotide identity, phylogenetic analysis was also carried out. The two phages represented new species when they had overall average nucleotide identity of < 95%. This is first report of the isolation and characterization of P. solanacearum-specific phages from tomato farms in Vietnam. Supplementary Information The online version contains supplementary material available at 10.1007/s12088-023-01090-9.
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Affiliation(s)
- Ngoc Quynh Anh Pham
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - To H. Ngoc
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Nam Vo
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
- Center for Bioscience and Biotechnology, University of Science, Ho Chi Minh City, Vietnam
- Laboratory of Molecular Biotechnology, University of Science, Ho Chi Minh City, Vietnam
| | - Tu Q. Vinh
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Nguyen M. Thien
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Hoang Duc Nguyen
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
- Center for Bioscience and Biotechnology, University of Science, Ho Chi Minh City, Vietnam
| | - Andrew D. Millard
- Department of Genetics and Genome Biology, University of Leicester, University Road, Leicester, UK
| | - Le T. T. Tien
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Vo T. Phuc
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Huynh N. Oanh
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
| | - Hoang A. Hoang
- Faculty of Chemical Engineering, Ho Chi Minh City University of Technology (HCMUT), 268 Ly Thuong Kiet, District 10, Ho Chi Minh City, Vietnam
- Vietnam National University Ho Chi Minh City, Linh Trung Ward, Thu Duc District, Ho Chi Minh City, Vietnam
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11
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Kushwah AS, Dixit H, Upadhyay V, Yadav S, Verma SK, Prasad R. Elucidating the zinc-binding proteome of Fusarium oxysporum f. sp. lycopersici with particular emphasis on zinc-binding effector proteins. Arch Microbiol 2023; 205:298. [PMID: 37516670 DOI: 10.1007/s00203-023-03638-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 06/29/2023] [Accepted: 07/14/2023] [Indexed: 07/31/2023]
Abstract
Fusarium oxysporum f. sp. lycopersici is a soil-borne phytopathogenic species which causes vascular wilt disease in the Solanum lycopersicum (tomato). Due to the continuous competition for zinc usage by Fusarium and its host during infection makes zinc-binding proteins a hotspot for focused investigation. Zinc-binding effector proteins are pivotal during the infection process, working in conjunction with other essential proteins crucial for its biological activities. This work aims at identifying and analysing zinc-binding proteins and zinc-binding proteins effector candidates of Fusarium. We have identified three hundred forty-six putative zinc-binding proteins; among these proteins, we got two hundred and thirty zinc-binding proteins effector candidates. The functional annotation, subcellular localization, and Gene Ontology analysis of these putative zinc-binding proteins revealed their probable role in wide range of cellular and biological processes such as metabolism, gene expression, gene expression regulation, protein biosynthesis, protein folding, cell signalling, DNA repair, and RNA processing. Sixteen proteins were found to be putatively secretory in nature. Eleven of these were putative zinc-binding protein effector candidates may be involved in pathogen-host interaction during infection. The information obtained here may enhance our understanding to design, screen, and apply the zinc-metal ion-based antifungal agents to protect the S. lycopersicum and control the vascular wilt caused by F. oxysporum.
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Affiliation(s)
- Ankita Singh Kushwah
- Department of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India
| | - Himisha Dixit
- Centre for Computational Biology & Bioinformatics, Central University of Himachal Pradesh, Kangra, Himachal Pradesh, 176206, India
| | - Vipin Upadhyay
- Centre for Computational Biology & Bioinformatics, Central University of Himachal Pradesh, Kangra, Himachal Pradesh, 176206, India
| | - Siddharth Yadav
- Department of Computer Science and Engineering, Thapar Institute of Engineering & Technology, Patiala, Punjab, 147004, India
| | - Shailender Kumar Verma
- Centre for Computational Biology & Bioinformatics, Central University of Himachal Pradesh, Kangra, Himachal Pradesh, 176206, India
- Department of Environmental Studies, University of Delhi, New Delhi, Delhi, 110007, India
| | - Ramasare Prasad
- Department of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India.
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12
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Nasuelli M, Novello G, Gamalero E, Massa N, Gorrasi S, Sudiro C, Hochart M, Altissimo A, Vuolo F, Bona E. PGPB and/or AM Fungi Consortia Affect Tomato Native Rhizosphere Microbiota. Microorganisms 2023; 11:1891. [PMID: 37630451 PMCID: PMC10458106 DOI: 10.3390/microorganisms11081891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Revised: 07/20/2023] [Accepted: 07/24/2023] [Indexed: 08/27/2023] Open
Abstract
Tomatoes are one of the most important crops worldwide and also play a central role in the human diet. Microbial consortia are microorganism associations, often employed as bioinoculants, that can interact with the native rhizosphere microbiota. The aim of this study was to evaluate the impact of a bacterial-based biostimulant (Pseudomonas fluorescens and Bacillus amyloliquefaciens) (PSBA) in combination, or not, with a commercial inoculum Micomix (Rhizoglomus irregulare, Funnelliformis mosseae, Funnelliformis caledonium, Bacillus licheniformis, Bacillus mucilaginosus) (MYC) on the native rhizosphere communities and on tomato production. The trial was carried out using Solanum lycopersicum in an open field as follows: control full NPK (CFD), control reduced NPK (CRD), MYC, PSBA, PSBA + MYC. Bacterial population in the different samples were characterized using a next generation sequencing approach. The bioinocula effect on the native rhizosphere microbiota resulted in significant variation both in alpha and beta diversity and in a specific signature associated with the presence of biostimulants, especially in the presence of co-inoculation (PSBA + MYC). In particular, the high initial biodiversity shifts in the community composition occurred and consisted in the increase in the abundance of genera correlated to the soil acidification and in an enhanced density of nitrogen-fixing microbes. The results also highlighted the well-known rhizosphere effect.
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Affiliation(s)
- Martina Nasuelli
- Dipartimento per lo Sviluppo Sostenibile e la Transizione Ecologica (DISSTE), Università del Piemonte Orientale, 13100 Vercelli, Italy;
| | - Giorgia Novello
- Dipartimento di Scienze e Innovazione Tecnologica (DISIT), Università del Piemonte Orientale, 15121 Alessandria, Italy; (E.G.); (N.M.)
| | - Elisa Gamalero
- Dipartimento di Scienze e Innovazione Tecnologica (DISIT), Università del Piemonte Orientale, 15121 Alessandria, Italy; (E.G.); (N.M.)
| | - Nadia Massa
- Dipartimento di Scienze e Innovazione Tecnologica (DISIT), Università del Piemonte Orientale, 15121 Alessandria, Italy; (E.G.); (N.M.)
| | - Susanna Gorrasi
- Dipartimento di Scienze Ecologiche e Biologiche, Università degli Studi della Tuscia, 01100 Viterbo, Italy;
| | - Cristina Sudiro
- Landlab S.r.l., 36050 Quinto Vicentino, Italy; (C.S.); (M.H.); (A.A.)
| | - Marie Hochart
- Landlab S.r.l., 36050 Quinto Vicentino, Italy; (C.S.); (M.H.); (A.A.)
| | - Adriano Altissimo
- Landlab S.r.l., 36050 Quinto Vicentino, Italy; (C.S.); (M.H.); (A.A.)
| | | | - Elisa Bona
- Dipartimento per lo Sviluppo Sostenibile e la Transizione Ecologica (DISSTE), Università del Piemonte Orientale, 13100 Vercelli, Italy;
- Center on Autoimmune and Allergic Diseases (CAAD), Università del Piemonte Orientale, 28100 Novara, Italy
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13
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Alfaro-Quezada JF, Martínez JP, Molinett S, Valenzuela M, Montenegro I, Ramírez I, Dorta F, Ávila-Valdés A, Gharbi E, Zhou M, Dailly H, Quinet M, Lutts S, Seeger M. Rootstock increases the physiological defence of tomato plants against Pseudomonas syringae pv. tomato infection. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:2891-2911. [PMID: 36723875 DOI: 10.1093/jxb/erad040] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 01/30/2023] [Indexed: 06/06/2023]
Abstract
Climate change has intensified the infection of tomato plants by pathogens such as Pseudomonas syringae pv. tomato (Pst). Rootstocks may increase plant tolerance to leaf phytopathogens. The aim of this study was to evaluate the effects of the tolerant Poncho Negro (R) tomato rootstock on physiological defence and the role of hydrogen sulfide (H2S) in susceptible Limachino (L) tomato plant responses to Pst attack. Ungrafted (L), self-grafted (L/L), and grafted (L/R) plants were infected with Pst. Rootstock increased the concentration of antioxidant compounds including ascorbate in the scion. Tolerant rootstock induced an increase of H2S in the scion, which correlated with enhanced expression of the SlAPX2 gene. A high accumulation of salicylic acid was observed in Pst-inoculated grafted L/L and L/R plants, but this was higher in L/R plants. The increase of H2S during Pst infection was associated with a reduction of ethylene in L/R plants. Our study indicates that the Poncho Negro rootstock reduced the symptoms of bacterial speck disease in the Limachino tomato plants, conferring tolerance to Pst infection. This study provides new knowledge about the impact of rootstock in the defence of tomato plants against leaf pathogens that could be used in sustainable management of tomato cultivation.
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Affiliation(s)
- Juan Felipe Alfaro-Quezada
- Laboratorio de Fisiología y Biología Molecular Vegetal, Instituto de Investigaciones Agropecuarias (INIA), Centro Regional La Cruz, Chorrillos 86, La Cruz, Chile
- Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
- Centro de Biotecnología Dr. Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
- Laboratorio de Fitopatología de Frutales, Instituto de Investigaciones Agropecuarias (INIA), Centro Regional Quilamapu, Avenida Vicente Méndez 515, Chillán, Chile
| | - Juan Pablo Martínez
- Laboratorio de Fisiología y Biología Molecular Vegetal, Instituto de Investigaciones Agropecuarias (INIA), Centro Regional La Cruz, Chorrillos 86, La Cruz, Chile
| | - Sebastian Molinett
- Laboratorio de Fisiología y Biología Molecular Vegetal, Instituto de Investigaciones Agropecuarias (INIA), Centro Regional La Cruz, Chorrillos 86, La Cruz, Chile
| | - Miryam Valenzuela
- Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
- Centro de Biotecnología Dr. Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - Ivan Montenegro
- Escuela de Obstetricia y Puericultura, Facultad de Medicina, Universidad de Valparaíso, Angamos 655, Reñaca, Viña del Mar, Chile
| | - Ingrid Ramírez
- Centro de Biotecnología Dr. Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - Fernando Dorta
- Centro de Biotecnología Dr. Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
| | - Andrea Ávila-Valdés
- Graduate School, Faculty of Agricultural Sciences & Centro de Investigación en Suelos Volcánicos, Universidad Austral de Chile, Campus Isla Teja, Valdivia, Chile
- Departamento de Producción Agrícola, Facultad de Ciencias Agronómicas, Universidad de Chile, Santa Rosa 11315, La Pintana, Santiago, Chile
| | - Emna Gharbi
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Mingxi Zhou
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université Catholique de Louvain, Louvain-la-Neuve, Belgium
- Biology Centre, Czech Academy of Sciences, Institute of Plant Molecular Biology, Ceske Budejovice, 37005, Czech Republic
| | - Hélène Dailly
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Muriel Quinet
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Stanley Lutts
- Groupe de Recherche en Physiologie Végétale (GRPV), Earth and Life Institute - Agronomy (ELI-A), Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Michael Seeger
- Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química, Universidad Técnica Federico Santa María, Avenida España 1680, Valparaíso, Chile
- Centro de Biotecnología Dr. Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, General Bari 699, Valparaíso, Chile
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Ishtiaq M, Mazhar MW, Maqbool M, Hussain T, Hussain SA, Casini R, Abd-ElGawad AM, Elansary HO. Seed Priming with the Selenium Nanoparticles Maintains the Redox Status in the Water Stressed Tomato Plants by Modulating the Antioxidant Defense Enzymes. PLANTS (BASEL, SWITZERLAND) 2023; 12:1556. [PMID: 37050182 PMCID: PMC10096850 DOI: 10.3390/plants12071556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 03/30/2023] [Accepted: 04/01/2023] [Indexed: 06/19/2023]
Abstract
In the present research, selenium nanoparticles (SeNPs) were tested for their use as seed priming agents under field trials on tomatoes (Solanum lycopersicum L.) for their efficacy in conferring drought tolerance. Four different seed priming regimes of SeNPs were created, comprising 25, 50, 75, and 100 ppm, along with a control treatment of 0 ppm. Seeds were planted in split plots under two irrigation regimes comprising water and water stress. The results suggest that seed priming with SeNPs can improve tomato crop performance under drought stress. Plants grown with 75 ppm SeNPs-primed seeds had lower hydrogen peroxide (H2O2) and malondialdehyde (MDA) levels by 39.3% and 28.9%, respectively. Seed priming with 75 ppm SeNPs further increased the superoxide dismutase (SOD) and catalase (CAT) functions by 34.9 and 25.4%, respectively. The same treatment increased the total carotenoids content by 13.5%, α-tocopherols content by 22.8%, total flavonoids content by 25.2%, total anthocyanins content by 19.6%, ascorbic acid content by 26.4%, reduced glutathione (GSH) content by 14.8%, and oxidized glutathione (GSSG) content by 13.12%. Furthermore, seed priming with SeNPs upregulated the functions of enzymes of ascorbate glutathione cycle. Seed priming with SeNPs is a smart application to sustain tomato production in arid lands.
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Affiliation(s)
- Muhammad Ishtiaq
- Department of Botany, Mirpur University of Science and Technology, Mirpur 10250, Pakistan
| | - Muhammad Waqas Mazhar
- Department of Botany, Mirpur University of Science and Technology, Mirpur 10250, Pakistan
| | - Mehwish Maqbool
- Department of Botany, Mirpur University of Science and Technology, Mirpur 10250, Pakistan
| | - Tanveer Hussain
- Department of Botany, Mirpur University of Science and Technology, Mirpur 10250, Pakistan
| | | | - Ryan Casini
- School of Public Health, University of California, Berkeley, 2121 Berkeley Way, Berkeley, CA 94704, USA
| | - Ahmed M. Abd-ElGawad
- Department of Plant Production, College of Food & Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia
| | - Hosam O. Elansary
- Department of Plant Production, College of Food & Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia
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15
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Ma M, Taylor PWJ, Chen D, Vaghefi N, He JZ. Major Soilborne Pathogens of Field Processing Tomatoes and Management Strategies. Microorganisms 2023; 11:microorganisms11020263. [PMID: 36838227 PMCID: PMC9958975 DOI: 10.3390/microorganisms11020263] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 12/28/2022] [Accepted: 12/28/2022] [Indexed: 01/20/2023] Open
Abstract
Globally, tomato is the second most cultivated vegetable crop next to potato, preferentially grown in temperate climates. Processing tomatoes are generally produced in field conditions, in which soilborne pathogens have serious impacts on tomato yield and quality by causing diseases of the tomato root system. Major processing tomato-producing countries have documented soilborne diseases caused by a variety of pathogens including bacteria, fungi, nematodes, and oomycetes, which are of economic importance and may threaten food security. Recent field surveys in the Australian processing tomato industry showed that plant growth and yield were significantly affected by soilborne pathogens, especially Fusarium oxysporum and Pythium species. Globally, different management methods have been used to control diseases such as the use of resistant tomato cultivars, the application of fungicides, and biological control. Among these methods, biocontrol has received increasing attention due to its high efficiency, target-specificity, sustainability and public acceptance. The application of biocontrol is a mix of different strategies, such as applying antagonistic microorganisms to the field, and using the beneficial metabolites synthesized by these microorganisms. This review provides a broad review of the major soilborne fungal/oomycete pathogens of the field processing tomato industry affecting major global producers, the traditional and biological management practices for the control of the pathogens, and the various strategies of the biological control for tomato soilborne diseases. The advantages and disadvantages of the management strategies are discussed, and highlighted is the importance of biological control in managing the diseases in field processing tomatoes under the pressure of global climate change.
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16
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Ruiz-Gonzalez A, Kempson H, Haseloff J. A Simple Reversed Iontophoresis-Based Sensor to Enable In Vivo Multiplexed Measurement of Plant Biomarkers Using Screen-Printed Electrodes. SENSORS (BASEL, SWITZERLAND) 2023; 23:780. [PMID: 36679574 PMCID: PMC9863583 DOI: 10.3390/s23020780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/05/2023] [Accepted: 01/05/2023] [Indexed: 06/17/2023]
Abstract
The direct quantification of plant biomarkers in sap is crucial to enhancing crop production. However, current approaches are inaccurate, involving the measurement of non-specific parameters such as colour intensity of leaves, or requiring highly invasive processes for the extraction of sap. In addition, these methods rely on bulky and expensive equipment, and they are time-consuming. The present work reports for the first time a low-cost sensing device that can be used for the simultaneous determination of sap K+ and pH in living plants by means of reverse iontophoresis. A screen-printed electrode was modified by deposition of a K+-selective membrane, achieving a super-Nernstian sensitivity of 70 mV Log[K+]−1 and a limit of detection within the micromolar level. In addition, the cathode material of the reverse iontophoresis device was modified by electrodeposition of RuOx particles. This electrode could be used for the direct extraction of ions from plant leaves and the amperometric determination of pH within the physiological range (pH 3−8), triggered by the selective reaction of RuOx with H+. A portable and low-cost (<£60) microcontroller-based device was additionally designed to enable its use in low-resource settings. The applicability of this system was demonstrated by measuring the changes in concentration of K+ and pH in tomato plants before and after watering with deionised water. These results represent a step forward in the design of affordable and non-invasive devices for the monitoring of key biomarkers in plants, with a plethora of applications in smart farming and precision agriculture among others.
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17
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Guo DJ, Singh P, Yang B, Singh RK, Verma KK, Sharma A, Khan Q, Qin Y, Chen TS, Song XP, Zhang BQ, Li DP, Li YR. Complete genome analysis of sugarcane root associated endophytic diazotroph Pseudomonas aeruginosa DJ06 revealing versatile molecular mechanism involved in sugarcane development. Front Microbiol 2023; 14:1096754. [PMID: 37152763 PMCID: PMC10157262 DOI: 10.3389/fmicb.2023.1096754] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 03/27/2023] [Indexed: 05/09/2023] Open
Abstract
Sugarcane is an important sugar and bioenergy source and a significant component of the economy in various countries in arid and semiarid. It requires more synthetic fertilizers and fungicides during growth and development. However, the excess use of synthetic fertilizers and fungicides causes environmental pollution and affects cane quality and productivity. Plant growth-promoting bacteria (PGPB) indirectly or directly promote plant growth in various ways. In this study, 22 PGPB strains were isolated from the roots of the sugarcane variety GT42. After screening of plant growth-promoting (PGP) traits, it was found that the DJ06 strain had the most potent PGP activity, which was identified as Pseudomonas aeruginosa by 16S rRNA gene sequencing. Scanning electron microscopy (SEM) and green fluorescent protein (GFP) labeling technology confirmed that the DJ06 strain successfully colonized sugarcane tissues. The complete genome sequencing of the DJ06 strain was performed using Nanopore and Illumina sequencing platforms. The results showed that the DJ06 strain genome size was 64,90,034 bp with a G+C content of 66.34%, including 5,912 protein-coding genes (CDSs) and 12 rRNA genes. A series of genes related to plant growth promotion was observed, such as nitrogen fixation, ammonia assimilation, siderophore, 1-aminocyclopropane-1-carboxylic acid (ACC), deaminase, indole-3-acetic acid (IAA) production, auxin biosynthesis, phosphate metabolism, hydrolase, biocontrol, and tolerance to abiotic stresses. In addition, the effect of the DJ06 strain was also evaluated by inoculation in two sugarcane varieties GT11 and B8. The length of the plant was increased significantly by 32.43 and 12.66% and fresh weight by 89.87 and 135.71% in sugarcane GT11 and B8 at 60 days after inoculation. The photosynthetic leaf gas exchange also increased significantly compared with the control plants. The content of indole-3-acetic acid (IAA) was enhanced and gibberellins (GA) and abscisic acid (ABA) were reduced in response to inoculation of the DJ06 strain as compared with control in two sugarcane varieties. The enzymatic activities of oxidative, nitrogen metabolism, and hydrolases were also changed dramatically in both sugarcane varieties with inoculation of the DJ06 strain. These findings provide better insights into the interactive action mechanisms of the P. aeruginosa DJ06 strain and sugarcane plant development.
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Affiliation(s)
- Dao-Jun Guo
- College of Life Sciences and Engineering, Hexi University, Zhangye, Gansu, China
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Pratiksha Singh
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Bin Yang
- College of Life Sciences and Engineering, Hexi University, Zhangye, Gansu, China
| | - Rajesh Kumar Singh
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Krishan K. Verma
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Anjney Sharma
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Qaisar Khan
- College of Agriculture, Guangxi University, Nanning, Guangxi, China
| | - Ying Qin
- College of Agriculture, Guangxi University, Nanning, Guangxi, China
| | - Ting-Su Chen
- Microbiology Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Xiu-Peng Song
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Bao-Qing Zhang
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
| | - Dong-Ping Li
- Microbiology Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
- Dong-Ping Li
| | - Yang-Rui Li
- Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture, Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China
- *Correspondence: Yang-Rui Li
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18
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Chen N, Shao Q, Lu Q, Li X, Gao Y. Transcriptome analysis reveals differential transcription in tomato (Solanum lycopersicum) following inoculation with Ralstonia solanacearum. Sci Rep 2022; 12:22137. [PMID: 36550145 PMCID: PMC9780229 DOI: 10.1038/s41598-022-26693-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 12/19/2022] [Indexed: 12/24/2022] Open
Abstract
Tomato (Solanum lycopersicum L.) is a major Solanaceae crop worldwide and is vulnerable to bacterial wilt (BW) caused by Ralstonia solanacearum during the production process. BW has become a growing concern that could enormously deplete the tomato yield from 50 to 100% and decrease the quality. Research on the molecular mechanism of tomato regulating BW resistance is still limited. In this study, two tomato inbred lines (Hm 2-2, resistant to BW; and BY 1-2, susceptible to BW) were used to explore the molecular mechanism of tomato in response to R. solanacearum infection by RNA-sequencing (RNA-seq) technology. We identified 1923 differentially expressed genes (DEGs) between Hm 2-2 and BY 1-2 after R. solanacearum inoculation. Among these DEGs, 828 were up-regulated while 1095 were down-regulated in R-3dpi (Hm 2-2 at 3 days post-inoculation with R. solanacearum) vs. R-mock (mock-inoculated Hm 2-2); 1087 and 2187 were up- and down-regulated, respectively, in S-3dpi (BY 1-2 at 3 days post-inoculation with R. solanacearum) vs. S-mock (mock-inoculated BY 1-2). Moreover, Gene Ontology (GO) enrichment analysis revealed that the largest amount of DEGs were annotated with the Biological Process terms, followed by Cellular Component and Molecular Function terms. A total of 114, 124, 85, and 89 regulated (or altered) pathways were identified in R-3dpi vs. R-mock, S-3dpi vs. S-mock, R-mock vs. S-mock, and R-3dpi vs. S-3dpi comparisons, respectively, by Kyoto Encyclopaedia of Genes and Genomes (KEGG) pathway analysis. These clarified the molecular function and resistance pathways of DEGs. Furthermore, quantitative RT-PCR (qRT-PCR) analysis confirmed the expression patterns of eight randomly selected DEGs, which suggested that the RNA-seq results were reliable. Subsequently, in order to further verify the reliability of the transcriptome data and the accuracy of qRT-PCR results, WRKY75, one of the eight DEGs was silenced by virus-induced gene silencing (VIGS) and the defense response of plants to R. solanacearum infection was analyzed. In conclusion, the findings of this study provide profound insight into the potential mechanism of tomato in response to R. solanacearum infection, which lays an important foundation for future studies on BW.
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Affiliation(s)
- Na Chen
- grid.449868.f0000 0000 9798 3808College of Life Science and Resources and Environment, Yichun University, Yichun, 336000 China
| | - Qin Shao
- grid.449868.f0000 0000 9798 3808College of Life Science and Resources and Environment, Yichun University, Yichun, 336000 China
| | - Qineng Lu
- grid.449868.f0000 0000 9798 3808College of Life Science and Resources and Environment, Yichun University, Yichun, 336000 China
| | - Xiaopeng Li
- grid.449868.f0000 0000 9798 3808College of Life Science and Resources and Environment, Yichun University, Yichun, 336000 China
| | - Yang Gao
- grid.449868.f0000 0000 9798 3808College of Life Science and Resources and Environment, Yichun University, Yichun, 336000 China
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19
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Fermentation as a Promising Tool to Valorize Rice-Milling Waste into Bio-Products Active against Root-Rot-Associated Pathogens for Improved Horticultural Plant Growth. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation8120716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
In this study, water extracts from fermented (F), ultrasonicated (US), and enzyme-hydrolyzed (E) rice bran (RB) were evaluated against sixteen fungal plant stem and root-rot-associated pathogens. The effects of pre-treated RB additives on plant growth substrate (PGS) on bean and tomato seed germination, stem height and root length of seedlings, and chlorophyll concentration in plants were analyzed. The results showed that US-assisted pre-treatments did not affect protein content in RB, while 36 h semi-solid fermentation (SSF) reduced protein content by 10.3–14.8%. US initiated a 2.9- and 2-fold increase in total sugar and total phenolics (TPC) contents compared to the untreated RB (3.89 g/100 g dw and 0.61 mg GAE/g dw, respectively). Lactic acid (19.66–23.42 g/100 g dw), acetic acid (10.54–14.24 g/100g dw), propionic acid (0.40–1.72 g/100 g dw), phenolic compounds (0.82–1.04 mg GAE/g dw), among which phenolic acids, such as p-coumaric, cinnamic, sinapic, vanillic, and ferulic, were detected in the fermented RB. The RBF extracts showed the greatest growth-inhibition effect against soil-born plant pathogens, such as Fusarium, Pythium, Sclerotinia, Aspergillus, Pseudomonas, and Verticillium. Beans and tomatoes grown in RBUS+E- and RBF-supplemented PGS increased the germination rate (14–75%), root length (21–44%), and stem height (25–47%) compared to seedlings grown in PGS. The RB additives increased up to 44.6–48.8% of the chlorophyll content in both plants grown under greenhouse conditions. The results indicate that the biological potential of rice-milling waste as a plant-growth-promoting substrate component can be enhanced using solid-state fermentation with antimicrobial LABs and US processing.
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20
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TomFusioNet: A tomato crop analysis framework for mobile applications using the multi-objective optimization based late fusion of deep models and background elimination. Appl Soft Comput 2022. [DOI: 10.1016/j.asoc.2022.109898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
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21
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Kanda PS, Xia K, Kyslytysna A, Owoola EO. Tomato Leaf Disease Recognition on Leaf Images Based on Fine-Tuned Residual Neural Networks. PLANTS (BASEL, SWITZERLAND) 2022; 11:2935. [PMID: 36365386 PMCID: PMC9653987 DOI: 10.3390/plants11212935] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/19/2022] [Accepted: 09/28/2022] [Indexed: 06/16/2023]
Abstract
Humans depend heavily on agriculture, which is the main source of prosperity. The various plant diseases that farmers must contend with have constituted a lot of challenges in crop production. The main issues that should be taken into account for maximizing productivity are the recognition and prevention of plant diseases. Early diagnosis of plant disease is essential for maximizing the level of agricultural yield as well as saving costs and reducing crop loss. In addition, the computerization of the whole process makes it simple for implementation. In this paper, an intelligent method based on deep learning is presented to recognize nine common tomato diseases. To this end, a residual neural network algorithm is presented to recognize tomato diseases. This research is carried out on four levels of diversity including depth size, discriminative learning rates, training and validation data split ratios, and batch sizes. For the experimental analysis, five network depths are used to measure the accuracy of the network. Based on the experimental results, the proposed method achieved the highest F1 score of 99.5%, which outperformed most previous competing methods in tomato leaf disease recognition. Further testing of our method on the Flavia leaf image dataset resulted in a 99.23% F1 score. However, the method had a drawback that some of the false predictions were of tomato early light and tomato late blight, which are two classes of fine-grained distinction.
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22
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Barbaccia P, Gaglio R, Dazzi C, Miceli C, Bella P, Lo Papa G, Settanni L. Plant Growth-Promoting Activities of Bacteria Isolated from an Anthropogenic Soil Located in Agrigento Province. Microorganisms 2022; 10:2167. [PMID: 36363759 PMCID: PMC9695372 DOI: 10.3390/microorganisms10112167] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 10/26/2022] [Accepted: 10/29/2022] [Indexed: 11/26/2023] Open
Abstract
Bacteria producers of plant growth-promoting (PGP) substances are responsible for the enhancement of plant development through several mechanisms. The purpose of the present work was to evaluate the PGP traits of 63 bacterial strains that were isolated from an anthropogenic soil, and obtained by modification of vertisols in the Sicily region (Italy) seven years after creation. The microorganisms were tested for the following PGP characteristics: indole acetic acid (IAA), NH3, HCN and siderophore production, 1-aminocyclopropane-1-carboxylate deaminase activity (ACC) and phosphate solubilization. The results of principal component analysis (PCA) showed that Bacillus tequilensis SI 319, Brevibacterium frigoritolerans SI 433, Pseudomonas lini SI 287 and Pseudomonas frederiksbergensis SI 307 expressed high levels of IAA and production of ACC deaminase enzyme, while for the rest of traits analyzed the best performances were registered with Pseudomonas genus, in particular for the strains Pseudomonas atacamensis SI 443, Pseudomonas reinekei SI 441 and Pseudomonas granadensis SI 422 and SI 450. The in vitro screening provided enough evidence for future in vivo growth promotion tests of these eight strains.
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Affiliation(s)
- Pietro Barbaccia
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
| | - Raimondo Gaglio
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
| | - Carmelo Dazzi
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
| | - Claudia Miceli
- Council for Agricultural Research and Economics, Plant Protection and Certification Centre, 90121 Palermo, Italy
| | - Patrizia Bella
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
| | - Giuseppe Lo Papa
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
| | - Luca Settanni
- Dipartimento Scienze Agrarie, Alimentari e Forestali, Università Degli Studi di Palermo, 90128 Palermo, Italy
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23
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Alizadeh-Moghaddam G, Nasr-Esfahani M, Rezayatmand Z, Khozaei M. Genomic markers analysis associated with resistance to Alternaria alternata (fr.) keissler-tomato pathotype, Solanum lycopersicum L. BREEDING SCIENCE 2022; 72:285-296. [PMID: 36699824 PMCID: PMC9868332 DOI: 10.1270/jsbbs.22003] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 05/09/2022] [Indexed: 05/19/2023]
Abstract
Alternaria alternata, the causal pathogen of early blight (EB) disease, is one of the most important diseases in tomato, and other solanaceae family. We analyzed 35 tomato genotypes for quantitative/qualitative traits and biomass growth parameters, as well as the extent and structure of genetic variation associated with EB resistance. Phenotypic comparisons displayed significant differences in leaf blade width (24.95%), stem thickness (30.28%), foliage density (18.88%), and plant size (18.89%), with significant positive correlations with EB resistance (0.18-0.75). Correlation analysis showed that mature fruit size, thickness of fruit pericarp, and leaf type were significantly and negatively correlated with EB resistance (up to -0.41). The susceptible tomato seedlings represented significant reductions in biomass parameters. According to ISSR analysis, the highest resolving power (≥0.79) and heterozygosity (≥0.24) values revealed the presence of high genetic variability among the tomato genotypes. Bayesian model-based STRUCTURE analysis assembled the genotypes into 4 (best ΔK = 4) genetic groups. Combined phenotypic and molecular markers proved to be significantly useful for genetic diversity assessment associated with EB disease resistance.
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Affiliation(s)
- Giti Alizadeh-Moghaddam
- Department of Biology, Falavarjan Branch, Islamic Azad University, Isfahan, 84517-31167, Iran
- Corresponding author (e-mail: )
| | - Mehdi Nasr-Esfahani
- Department of Plant Protection Research, Isfahan Agricultural and Natural Resources Research and Education Center, AREEO, Isfahan, Iran
| | - Zahra Rezayatmand
- Department of Biology, Falavarjan Branch, Islamic Azad University, Isfahan, 84517-31167, Iran
| | - Mahdi Khozaei
- Plant Biotechnology, Department of Biology, University of Isfahan, Isfahan, Iran
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24
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Danish M, Shahid M, Ahamad L, Raees K, Atef Hatamleh A, Al-Dosary MA, Mohamed A, Al-Wasel YA, Singh UB, Danish S. Nano-pesticidal potential of Cassia fistula (L.) leaf synthesized silver nanoparticles (Ag@CfL-NPs): Deciphering the phytopathogenic inhibition and growth augmentation in Solanum lycopersicum (L.). Front Microbiol 2022; 13:985852. [PMID: 36090121 PMCID: PMC9459237 DOI: 10.3389/fmicb.2022.985852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 07/15/2022] [Indexed: 11/24/2022] Open
Abstract
Plant-based synthesis of silver nanoparticles (Ag-NPs) has emerged as a potential alternative to traditional chemical synthesis methods. In this context, the aim of the present study was to synthesize Ag-NPs from Cassia fistula (L.) leaf extract and to evaluate their nano-pesticidal potential against major phyto-pathogens of tomato. From the data, it was found that particle size of spherical C. fistula leaf synthesized (Ag@CfL-NPs) varied from 10 to 20 nm, with the average diameter of 16 nm. Ag@CfL-NPs were validated and characterized by UV-visible spectroscopy (surface resonance peak λmax = 430 nm), energy dispersive spectrophotometer (EDX), Fourier transform infrared (FTIR), and X-ray diffraction pattern (XRD), and electron microscopy; scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The FTIR spectra verified the participation of various living molecules (aromatic/aliphatic moieties and proteins) in synthesized Ag@CfL-NPs. The anti-phytopathogenic potential of Ag@CfL-NPs was assessed under in vitro conditions. Increasing doses of Ag@CfL-NPs exhibited an inhibitory effect against bacterial pathogen Pseudomonas syringae and 400 μg Ag@CfL-NPs ml–1 caused a reduction in cellular viability, altered bacterial morphology, and caused cellular death Furthermore, Ag@CfL-NPs reduced exopolysaccharides (EPS) production and biofilm formation by P. syringae Additionally, Ag@CfL-NPs showed pronounced antifungal activity against major fungal pathogens. At 400 μg Ag@CfL-NPs ml–1, sensitivity of tested fungi followed the order: Fusarium oxysporum (76%) > R. solani (65%) > Sarocladium (39%). Furthermore, 400 μg Ag@CfL-NPs ml–1 inhibited the egg-hatching and increased larval mortality of Meloidogyne incognita by 82 and 65%, respectively, over control. Moreover, pot studies were performed to assess the efficacy of Ag@CfL-NPs to phyto-pathogens using tomato (Solanum lycopersicum L.) as a model crop. The applied phyto-pathogens suppressed the biological, physiological, and oxidative-stress responsiveness of tomatoes. However, 100 mg Ag@CfL-NPs kg–1 improved overall performance and dramatically increased the root length, dry biomass, total chlorophyll, carotenoid, peroxidase (POD), and phenylalanine ammonia lyase (PAL) activity over pathogens-challenged tomatoes. This study is anticipated to serve as an essential indication for synthesis of efficient nano-control agents, which would aid in the management of fatal phyto-pathogens causing significant losses to agricultural productivity. Overall, our findings imply that Ag@CfL-NPs as nano-pesticides might be used in green agriculture to manage the diseases and promote plant health in a sustainable way.
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Affiliation(s)
- Mohammad Danish
- Section of Plant Pathology and Nematology, Department of Botany, Aligarh Muslim University, Aligarh, India
- *Correspondence: Mohammad Danish,
| | - Mohammad Shahid
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, India
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Mau, India
| | - Lukman Ahamad
- Section of Plant Pathology and Nematology, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Kashif Raees
- Department of Chemistry, Chandigarh University, Mohali, India
| | - Ashraf Atef Hatamleh
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | | | | | | | - Udai B. Singh
- Plant-Microbe Interaction and Rhizosphere Biology Lab, ICAR-NBAIM, Mau, India
| | - Subhan Danish
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresource, College of Tropical Crops, Hainan University, Haikou, China
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25
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Burkholderia cenocepacia ETR-B22 volatile organic compounds suppress postharvest grey mould infection and maintain aroma quality of tomato fruit. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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New Insights into Bacillus-Primed Plant Responses to a Necrotrophic Pathogen Derived from the Tomato- Botrytis Pathosystem. Microorganisms 2022; 10:microorganisms10081547. [PMID: 36013965 PMCID: PMC9416759 DOI: 10.3390/microorganisms10081547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Revised: 07/14/2022] [Accepted: 07/20/2022] [Indexed: 02/04/2023] Open
Abstract
Induced systemic resistance (ISR) is one of the most studied mechanisms of plant−microbe interaction and is considered a very promising alternative for integrated pest management programs. In our study, we explored the plant defense response induced by Bacillus velezensis BBC047 in relation to its application before or after Botrytis cinerea infection of tomato plants. The inoculation of BBC047 did not considerably alter the gene expression of the tomato tissues, whereas infection with B. cinerea in BBC047-primed plants induced expression of LRR and NBS-LRR receptors, which are highly related to the ISR response. As expected, B. cinerea infection generated molecular patterns typical of a defense response to pathogen infection as the overexpression of pathogenesis-related proteins (PRs) in leaflets distant to the point of infection. The curative treatment (P + F + B) allowed us to gain insights into plant response to an inverted priming. In this treatment, B. cinerea caused the m tissue damage, extending nearly entirely across the entire infected leaves. Additionally, genes generally associated with early SAR response (<16 h) were overexpressed, and apparently, the beneficial strain was not perceived as such. Therefore, we infer that the plant defense to the curative treatment represents a higher degree of biological stress triggered by the incorporation of strain BBC047 as second arriving microorganism. We highlight the importance the phytosanitary status of plants prior to inoculation of beneficial microorganism for the biocontrol of pathogens.
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27
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Xiong J, Peng S, Liu Y, Yin H, Zhou L, Zhou Z, Tan G, Gu Y, Zhang H, Huang J, Meng D. Soil properties, rhizosphere bacterial community, and plant performance respond differently to fumigation and bioagent treatment in continuous cropping fields. Front Microbiol 2022; 13:923405. [PMID: 35935223 PMCID: PMC9354655 DOI: 10.3389/fmicb.2022.923405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/27/2022] [Indexed: 11/15/2022] Open
Abstract
Continuous cropping barriers lead to huge agriculture production losses, and fumigation and biological agents are developed to alleviate the barriers. However, there is a lack of literature on the differences between strong chemical fumigant treatment and moderate biological agent treatment. In this study, we investigated those differences and attempted to establish the links between soil properties, rhizosphere microbial community, and plant performance in both fumigation- and bioagent-treated fields. The results showed that the fumigation had a stronger effect on both soil functional microbes, i.e., ammonia oxidizers and soil-borne bacterial pathogens, and therefore, led to a significant change in soil properties, higher fertilizer efficiency, lower disease infections, and improved plant growth, compared with untreated control fields. Biological treatment caused less changes to soil properties, rhizosphere bacterial community, and plant physiology. Correlation and modeling analyses revealed that the bioagent effect was mainly direct, whereas fumigation resulted in indirect effects on alleviating cropping barriers. A possible explanation would be the reconstruction of the soil microbial community by the fumigation process, which would subsequently lead to changes in soil characteristics and plant performance, resulting in the effective alleviation of continuous cropping barriers.
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Affiliation(s)
- Jing Xiong
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Shuguang Peng
- Tobacco Research Institute of Hunan Province, Changsha, China
| | - Yongjun Liu
- Tobacco Research Institute of Hunan Province, Changsha, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Lei Zhou
- Beijing Research Institute of Chemical Engineering and Metallurgy, Beijing, China
| | - Zhicheng Zhou
- Tobacco Research Institute of Hunan Province, Changsha, China
| | - Ge Tan
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Yabing Gu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Hetian Zhang
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Jingyi Huang
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
| | - Delong Meng
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- *Correspondence: Delong Meng,
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28
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Esquivel-Cervantes LF, Tlapal-Bolaños B, Tovar-Pedraza JM, Pérez-Hernández O, Leyva-Mir SG, Camacho-Tapia M. Efficacy of Biorational Products for Managing Diseases of Tomato in Greenhouse Production. PLANTS (BASEL, SWITZERLAND) 2022; 11:1638. [PMID: 35807589 PMCID: PMC9269266 DOI: 10.3390/plants11131638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 06/16/2022] [Accepted: 06/18/2022] [Indexed: 06/15/2023]
Abstract
Gray mold (Botrytis cinerea), late blight (Phytophthora infestans), powdery mildew (Leveillula taurica), pith necrosis (Pseudomonas corrugata), and bacterial canker (Clavibacter michiganensis) are major diseases that affect tomato (Solanum lycopersicum L.) in greenhouse production in Mexico. Management of these diseases depends heavily on chemical control, with up to 24 fungicide applications required in a single season to control fungal diseases, thus ensuring a harvestable crop. While disease chemical control is a mainstay practice in the region, its frequent use increases the production costs, likelihood of pathogen-resistance development, and negative environmental impact. Due to this, there is a need for alternative practices that minimize such effects and increase profits for tomato growers. The aim of this study is to evaluate the effect of biorational products in the control of these diseases in greenhouse production. Four different treatments, including soil application of Bacillus spp. or B. subtilis and foliar application of Reynoutria sachalinensis, Melaleuca alternifolia, harpin αβ proteins, or bee honey were evaluated and compared to a conventional foliar management program (control) in a commercial production greenhouse in Central Mexico in 2016 and 2017. Disease incidence was measured at periodic intervals for six months and used to calculate the area under the disease progress curve (AUDPC). Overall, the analysis of the AUDPC showed that all treatments were more effective than the conventional program in controlling most of the examined diseases. The tested products were effective in reducing the intensity of powdery mildew and gray mold, but not that of bacterial canker, late blight, and pith necrosis. Application of these products constitutes a disease management alternative that represents cost-saving to tomato growers of about 2500 U.S. dollars per production cycle ha-1, in addition to having less negative impact on the environment. The products tested in this study have the potential to be incorporated in an integrated program for management of the examined diseases in tomato in this region.
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Affiliation(s)
| | - Bertha Tlapal-Bolaños
- Departamento de Parasitología Agrícola, Universidad Autónoma Chapingo, Texcoco 56230, Mexico; (L.F.E.-C.); (S.G.L.-M.)
| | - Juan Manuel Tovar-Pedraza
- Laboratorio de Fitopatología, Coordinación Regional Culiacán, Centro de Investigación en Alimentación y Desarrollo, Culiacán 80110, Mexico
| | - Oscar Pérez-Hernández
- Department of Plant Sciences and Plant Pathology, Montana State University, Bozeman, MT 59717, USA;
| | - Santos Gerardo Leyva-Mir
- Departamento de Parasitología Agrícola, Universidad Autónoma Chapingo, Texcoco 56230, Mexico; (L.F.E.-C.); (S.G.L.-M.)
| | - Moisés Camacho-Tapia
- Laboratorio Nacional de Investigación y Servicio Agroalimentario y Forestal, Universidad Autónoma Chapingo, Texcoco 56230, Mexico;
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29
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Control of Tomato Wilt Disease Fungus Fusarium oxysporum f.sp. Lycopersicon by Single or Combine Interaction of Mycorrhiza, Trichoderma harzianum, and Effective Microorganisms (Microbial Blend). JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2022. [DOI: 10.22207/jpam.16.2.64] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The tomato plant is usually infected with various pathogens such as pests, bacteria, and different mycoflora. In this investigation, Tomato plant cultivar Beeli was pathogenized with Fusarium oxysporum f.sp. Lycopersicon (FOL1) fungi. The FOL1 fungus was controlled by inoculating the pathogenized Tomato plants with each one of the biocontrol microorganisms, such as Arbuscular mycorrhiza (AM), Trichoderma harzianum (T. harzianum), and microbial blend, named as Effective Microorganisms (EM). Consequently, the effect of these biocontrol microorganisms on the amount of chlorophyll, proteins, and defense enzymes of the Tomato plant was estimated. The results showed that the AM, T. harzianum fungi, and “EM” gave similar ameliorative effects. However, there are regulated increasing content of chlorophyll, proteins, and the activities of many protecting compounds such as acid invertase peroxidase. Moreover, these important plant defense mechanisms have a vital role in oxidizing phenolic compounds, which could increase antimicrobial activity. Altogether, the results demonstrate that the protein and chlorophyll are increased differently in all treatments. The protein level is the highest in FOL1 + EM treatment and the ML showed the highest level of chlorophyll.
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30
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Biorefinery of Tomato Leaves by Integrated Extraction and Membrane Processes to Obtain Fractions That Enhance Induced Resistance against Pseudomonas syringae Infection. MEMBRANES 2022; 12:membranes12060585. [PMID: 35736292 PMCID: PMC9229720 DOI: 10.3390/membranes12060585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Revised: 05/27/2022] [Accepted: 05/30/2022] [Indexed: 02/04/2023]
Abstract
Tomato leaves have been shown to contain significant amounts of important metabolites involved in protection against abiotic and biotic stress and/or possessing important therapeutic properties. In this work, a systematic study was carried out to evaluate the potential of a sustainable process for the fractionation of major biomolecules from tomato leaves, by combining aqueous extraction and membrane processes. The extraction parameters (temperature, pH, and liquid/solid ratio (L/S)) were optimized to obtain high amounts of biomolecules (proteins, carbohydrates, biophenols). Subsequently, the aqueous extract was processed by membrane processes, using 30–50 kDa and 1–5 kDa membranes for the first and second stage, respectively. The permeate from the first stage, which was used to remove proteins from the aqueous extract, was further fractionated in the second stage, where the appropriate membrane material was also selected. Of all the membranes tested in the first stage, regenerated cellulose membranes (RC) showed the best performance in terms of higher rejection of proteins (85%) and lower fouling index (less than 15% compared to 80% of the other membranes tested), indicating that they are suitable for fractionation of proteins from biophenols and carbohydrates. In the second stage, the best results were obtained by using polyethersulfone (PES) membranes with an NMWCO of 5 kDa, since the greatest difference between the rejection coefficients of carbohydrates and phenolic compounds was obtained. In vivo bioactivity tests confirmed that fractions obtained with PES 5 kDa membranes were able to induce plant defense against P. syringae.
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Harutyunyan N, Kushugulova A, Hovhannisyan N, Pepoyan A. One Health Probiotics as Biocontrol Agents: One Health Tomato Probiotics. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11101334. [PMID: 35631758 PMCID: PMC9145216 DOI: 10.3390/plants11101334] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 05/08/2022] [Accepted: 05/08/2022] [Indexed: 05/06/2023]
Abstract
Tomato (Lycopersicon esculentum) is one of the most popular and valuable vegetables in the world. The most common products of its industrial processing in the food industry are juice, tomato paste, various sauces, canned or sun-dried fruits and powdered products. Tomato fruits are susceptible to bacterial diseases, and bacterial contamination can be a risk factor for the safety of processed tomato products. Developments in bioinformatics allow researchers to discuss target probiotic strains from an existing large number of probiotic strains for any link in the soil-plant-animal-human chain. Based on the literature and knowledge on the "One Health" concept, this study relates to the suggestion of a new term for probiotics: "One Health probiotics", beneficial for the unity of people, animals, and the environment. Strains of Lactiplantibacillus plantarum, having an ability to ferment a broad spectrum of plant carbohydrates, probiotic effects in human, and animal health, as well as being found in dairy products, vegetables, sauerkraut, pickles, some cheeses, fermented sausages, fish products, and rhizospheric soil, might be suggested as one of the probable candidates for "One Health" probiotics (also, for "One Health-tomato" probiotics) for the utilization in agriculture, food processing, and healthcare.
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Affiliation(s)
- Natalya Harutyunyan
- Food Safety and Biotechnology Department, Armenian National Agrarian University, 74 Teryan St., Yerevan 0009, Armenia;
| | - Almagul Kushugulova
- Laboratory of Human Microbiome and Longevity, Center for Life Sciences, National Laboratory Astana, Nazarbayev University, 53 Kabanbay Batyr Ave., Nur-Sultan 010000, Kazakhstan;
| | - Narine Hovhannisyan
- Plant Origin Raw Material Processing Technology Department, Armenian National Agrarian University, 74 Teryan St., Yerevan 0009, Armenia;
| | - Astghik Pepoyan
- Food Safety and Biotechnology Department, Armenian National Agrarian University, 74 Teryan St., Yerevan 0009, Armenia;
- Correspondence: ; Tel.: +374-91-432-493
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Jia H, Muhae-Ud-Din G, Zhang H, Zong Q, Zhao S, Guo Q, Chen W, Gao L. Characterization of Rhizosphere Microbial Communities for Disease Incidence and Optimized Concentration of Difenoconazole Fungicide for Controlling of Wheat Dwarf Bunt. Front Microbiol 2022; 13:853176. [PMID: 35615520 PMCID: PMC9125210 DOI: 10.3389/fmicb.2022.853176] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 03/28/2022] [Indexed: 11/13/2022] Open
Abstract
Rhizosphere soil microorganisms have great agricultural importance. To explore the relationship between rhizosphere microorganisms and the disease incidence, and to optimize the concentration of difenoconazole fungicide for the control of wheat dwarf bunt, caused by Tilletia controversa Kühn, the rhizosphere microorganisms were characterized based on sequencing methods. We found that the disease incidence correlated with the relative abundance of some microbial communities, such as Acidobacteria, Nocardioides, Roseiflexaceae, Pyrinomonadaceae, and Gemmatimonadaceae. Actinobacteria showed significant differences in the infected soils when compared to the control soils, and the relative abundance of Acidobacteria, Pyrinomonadaceae, Gemmatimonadaceae, and Saccharimonadales populations was distinctly higher in the T. controversa-inoculated group than in the control group. The members of Dehalococcoidia, Nitrosomonadaceae, and Thermomicrobiales were found only in T. controversa-inoculated soils, and these taxa may have potential effects against the pathogen and contribute to disease control of wheat dwarf bunt. In addition, for T. controversa-infected plants, the soil treated with difenoconazole showed a high relative abundance of Proteobacteria, Actinobacteria, Ascomycota, Basidiomycota, Mortierellomycota, and Olpidiomycota based on the heatmap analysis and ANOVA. Our findings suggest that the optimized concentration of fungicide (5% recommended difenoconazole) exhibits better control efficiency and constant diversity in the rhizosphere soil.
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Affiliation(s)
- Huanyu Jia
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Ghulam Muhae-Ud-Din
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Han Zhang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization, Shihezi University, Xinjiang, China
| | - Qianqian Zong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- Department of Agricultural Science, Xinjiang Agricultural University, Ürümqi, China
| | - Sifeng Zhao
- Key Laboratory at Universities of Xinjiang Uygur Autonomous Region for Oasis Agricultural Pest Management and Plant Protection Resource Utilization, Shihezi University, Xinjiang, China
| | - Qingyuan Guo
- Department of Agricultural Science, Xinjiang Agricultural University, Ürümqi, China
| | - Wanquan Chen
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Li Gao
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- *Correspondence: Li Gao,
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Lee YJ, Luo H, Kim WG, Yu JM. First report of tomato pith necrosis caused by Pseudomonas mediterranea in South Korea. PLANT DISEASE 2022; 106:2985. [PMID: 35442049 DOI: 10.1094/pdis-07-21-1434-pdn] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Tomato (Solanum lycopersicum) is one of the most economically important vegetables worldwide, and its production is directly affected by several bacterial diseases (Singh et al., 2017). During a disease survey in 2020, pith necrosis-like symptoms, commonly caused by Pseudomonas spp., were observed in two commercial greenhouses in PyeongChang and Gyeongju, South Korea. Disease incidence ranged from 8 to 10%, and infected plants showed wilt symptoms, brown stem discoloration, leaf blight, and corrugated pith tissues (eXtra Fig. 1). Symptomatic stem tissues were surface disinfected, cut into small pieces, and macerated in sterile water. The resulting suspension was spread on nutrient agar, and incubated at 28°C. The dominant bacterial colony types were round, mucoid, and frequently produced yellow to brown pigments. Four bacterial colonies (CPB20664 - CPB20667), each from a different diseased plant, were selected for further study. All isolates were Gram-negative and did not produce fluorescent pigments on King's B medium. Biochemical profiles of the isolates were determined by the API20NE (Biomerieux, Durhan, NC, USA) and LOPAT test (eXtra Table 1). The bacterial isolates were further identified by PCR amplification of partial 16S rRNA, gyrB, and rpoD genes using primers 27F/1492R, UP-1E/AprU, and 70F/70R, respectively (Lane 1991, Yamamoto et al., 2000). The resulting sequences were deposited in GenBank under accession numbers MW602997 to MW603000 for 16S rRNA, MW602987 to MW602990 for gyrB, and MW602991 to MW602994 for rpoD. These sequences exhibited 99-100% nucleotide similarities with multiple Pseudomonas mediterranea sequences in Genbank. Additionally, the isolates were subjected to PCR assays using the P. mediterranea specific primers PC5/1-PC5/2 and the P. corrugata specific primers PC1/1-PC1/2 (Catara et al., 2002). All isolates produced a specific 600-bp band with the P. mediterranea primers, but did not produce any bands with the P. corrugata specific primers. The PCR amplicons were sequenced and BLAST queried against GenBank database. All isolates shared 100% identity with the type strain P. mediterranea DSM 16733 (acc No. LT629790.1). These results indicated that the bacteria isolated from the tomato plants with pith necrosis were P. mediterranea. Pathogenicity tests were conducted on 2-week-old tomato seedlings (cv. Yekwang) by wound inoculations. Single colonies were picked up using sterile toothpicks, and the stems of tomato seedlings were stabbed below the second leaves. As a negative control, a sterile toothpick was dipped in sterile water and used in the same manner. After inoculation, the plants were kept in a humidity box for 48 h, then moved to a plant growth room. After 15 days, light brown lesions had developed at the stab sites, and pith necrosis and slight wilting of plants were observed at 30 days (eXtra Fig. 1). Control plants remained asymptomatic. P. mediterranea was re-isolated from infected plants, fulfilling Koch's postulates. Five species of Pseudomonas are known to cause tomato pith necrosis (Alippi and Lopez, 2010, Cañizares and García-Pedrajas., 2015, Ruan et al., 2018) including P. corrugata previously reported from Korea (Choi and Han, 2004). This is believed to be the first report of P. mediterranea as the cause of tomato pith necrosis in Korea. Tomato pith necrosis disease reduces the quality and yield of tomato production and appropriate management strategies should be investigated to control this disease.
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Affiliation(s)
- Yun Jung Lee
- Chungnam National University, 26715, Applied Biology, Daejeon, Daejeon, Korea (the Republic of);
| | - Huan Luo
- Chungnam National University, 26715, Department of Applied Biology, Daejeon, Daejeon, Korea (the Republic of);
| | - Wan-Gyu Kim
- Global Agro-Consulting Corporation, Suwon, Korea (the Republic of);
| | - Jun Myoung Yu
- Chungnam National University, 26715, Applied Biology, 99 Deahak-Ro, Yuseong-Gu, Dept. of Applied Biology, Chungnam national univer, Daejeon, Daejeon, N/A, Korea (the Republic of), 34134;
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Sandhya D, Jogam P, Venkatapuram AK, Savitikadi P, Peddaboina V, Allini VR, Abbagani S. Highly efficient Agrobacterium-mediated transformation and plant regeneration system for genome engineering in tomato. Saudi J Biol Sci 2022; 29:103292. [PMID: 35540178 PMCID: PMC9079358 DOI: 10.1016/j.sjbs.2022.103292] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 04/05/2022] [Accepted: 04/17/2022] [Indexed: 11/19/2022] Open
Abstract
Tomato (Solanum lycopersicum L.) is an important vegetable and nutritious crop plant worldwide. They are rich sources of several indispensable compounds such as lycopene, minerals, vitamins, carotenoids, essential amino acids, and bioactive polyphenols. Plant regeneration and Agrobacterium-mediated genetic transformation system from different explants in various genotypes of tomato are necessary for genetic improvement. Among diverse plant growth regulator (PGR) combinations and concentrations tested, Zeatin (ZEA) at 2.0 mg l−1 in combination with 0.1 mg l−1 indole-3-acetic acid (IAA) generated the most shoots/explant from the cotyledon of Arka Vikas (36.48 shoots/explant) and PED (24.68 shoots/explant), respectively. The hypocotyl explant produced 28.76 shoots/explant in Arka Vikas and 19.44 shoots/explant in PED. In contrast, leaf explant induced 23.54 shoots/explant in Arka Vikas and 17.64 shoots/explant in PED. The obtained multiple shoot buds from three explant types were elongated on a medium fortified with Gibberellic acid (GA3) (1.0 mg l−1), IAA (0.5 mg l−1), and ZEA (0.5 mg l−1) in both the cultivars. The rooting was observed on a medium amended with 0.5 mg l−1 indole 3-butyric acid (IBA). The transformation efficiency was significantly improved by optimizing the pre-culture of explants, co-cultivation duration, bacterial density and infection time, and acetosyringone concentration. The presence of transgenes in the plant genome was validated using different methods like histochemical GUS assay, Polymerase Chain Reaction (PCR), and Southern blotting. The transformation efficiency was 42.8% in PED and 64.6% in Arka Vikas. A highly repeatable plant regeneration protocol was established by manipulating various plant growth regulators (PGRs) in two tomato cultivars (Arka Vikas and PED). The Agrobacterium-mediated transformation method was optimized using different explants like cotyledon, hypocotyl, and leaf of two tomato genotypes. The present study could be favourable to transferring desirable traits and precise genome editing techniques to develop superior tomato genotypes.
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Affiliation(s)
- Dulam Sandhya
- Department of Biotechnology, Kakatiya University, Warangal, Telangana 506009, India
| | - Phanikanth Jogam
- Department of Biotechnology, Kakatiya University, Warangal, Telangana 506009, India
| | | | | | | | - Venkateswar Rao Allini
- Department of Biotechnology, Kakatiya University, Warangal, Telangana 506009, India
- Corresponding authors.
| | - Sadanandam Abbagani
- Department of Biotechnology, Kakatiya University, Warangal, Telangana 506009, India
- Corresponding authors.
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Plant-Derived Protectants in Combating Soil-Borne Fungal Infections in Tomato and Chilli. J Fungi (Basel) 2022; 8:jof8020213. [PMID: 35205967 PMCID: PMC8878687 DOI: 10.3390/jof8020213] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 02/17/2022] [Accepted: 02/19/2022] [Indexed: 12/17/2022] Open
Abstract
Fungal infections transmitted through the soil continue to pose a threat to a variety of horticultural and agricultural products, including tomato and chilli. The indiscriminate use of synthetic pesticides has resulted in a slew of unintended consequences for the surrounding ecosystem. To achieve sustainable productivity, experts have turned their attention to natural alternatives. Due to their biodegradability, varied mode of action, and minimal toxicity to non-target organisms, plant-derived protectants (PDPs) are being hailed as a superior replacement for plant pesticides. This review outlines PDPs’ critical functions (including formulations) in regulating soil-borne fungal diseases, keeping tomato and chilli pathogens in the spotlight. An in-depth examination of the impact of PDPs on pathogen activity will be a priority. Additionally, this review emphasises the advantages of the in silico approach over conventional approaches for screening plants’ secondary metabolites with target-specific fungicidal activity. Despite the recent advances in our understanding of the fungicidal capabilities of various PDPs, it is taking much longer for that information to be applied to commercially available pesticides. The restrictions to solving this issue can be lifted by breakthroughs in formulation technology, governmental support, and a willingness to pursue green alternatives among farmers and industries.
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Defense Strategies: The Role of Transcription Factors in Tomato-Pathogen Interaction. BIOLOGY 2022; 11:biology11020235. [PMID: 35205101 PMCID: PMC8869667 DOI: 10.3390/biology11020235] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 01/25/2022] [Accepted: 01/28/2022] [Indexed: 01/21/2023]
Abstract
Simple Summary Tomato is one of the most cultivated and economically important vegetable crops throughout the world. It is affected by a panoply of different pathogens that cause infectious diseases that reduce tomato yield and affect product quality, with the most common symptoms being wilts, leaf spots/blights, fruit spots, and rots. To survive, tomato, as other plants, have developed elaborate defense mechanisms against plant pathogens. Among several genes already identified in tomato response to pathogens, we highlight those encoding the transcription factors (TFs). TFs are regulators of gene expression and are involved in large-scale biological phenomena. Here, we present an overview of recent studies of tomato TFs regarding defense responses to pathogen attack, selected for their abundance, importance, and availability of functionally well-characterized members. Tomato TFs’ roles and the possibilities related to their use for genetic engineering in view of crop breeding are presented. Abstract Tomato, one of the most cultivated and economically important vegetable crops throughout the world, is affected by a panoply of different pathogens that reduce yield and affect product quality. The study of tomato–pathogen system arises as an ideal system for better understanding the molecular mechanisms underlying disease resistance, offering an opportunity of improving yield and quality of the products. Among several genes already identified in tomato response to pathogens, we highlight those encoding the transcription factors (TFs). TFs act as transcriptional activators or repressors of gene expression and are involved in large-scale biological phenomena. They are key regulators of central components of plant innate immune system and basal defense in diverse biological processes, including defense responses to pathogens. Here, we present an overview of recent studies of tomato TFs regarding defense responses to biotic stresses. Hence, we focus on different families of TFs, selected for their abundance, importance, and availability of functionally well-characterized members in response to pathogen attack. Tomato TFs’ roles and possibilities related to their use for engineering pathogen resistance in tomato are presented. With this review, we intend to provide new insights into the regulation of tomato defense mechanisms against invading pathogens in view of plant breeding.
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Plant Growth-Promoting Activity of Pseudomonas aeruginosa FG106 and Its Ability to Act as a Biocontrol Agent against Potato, Tomato and Taro Pathogens. BIOLOGY 2022; 11:biology11010140. [PMID: 35053136 PMCID: PMC8773043 DOI: 10.3390/biology11010140] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 12/31/2021] [Accepted: 01/10/2022] [Indexed: 12/24/2022]
Abstract
P. aeruginosa strain FG106 was isolated from the rhizosphere of tomato plants and identified through morphological analysis, 16S rRNA gene sequencing, and whole-genome sequencing. In vitro and in vivo experiments demonstrated that this strain could control several pathogens on tomato, potato, taro, and strawberry. Volatile and non-volatile metabolites produced by the strain are known to adversely affect the tested pathogens. FG106 showed clear antagonism against Alternaria alternata, Botrytis cinerea, Clavibacter michiganensis subsp. michiganensis, Phytophthora colocasiae, P. infestans, Rhizoctonia solani, and Xanthomonas euvesicatoria pv. perforans. FG106 produced proteases and lipases while also inducing high phosphate solubilization, producing siderophores, ammonia, indole acetic acid (IAA), and hydrogen cyanide (HCN) and forming biofilms that promote plant growth and facilitate biocontrol. Genome mining approaches showed that this strain harbors genes related to biocontrol and growth promotion. These results suggest that this bacterial strain provides good protection against pathogens of several agriculturally important plants via direct and indirect modes of action and could thus be a valuable bio-control agent.
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Tariq M, Jameel F, Ijaz U, Abdullah M, Rashid K. Biofertilizer microorganisms accompanying pathogenic attributes: a potential threat. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2022; 28:77-90. [PMID: 35221573 PMCID: PMC8847475 DOI: 10.1007/s12298-022-01138-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Revised: 11/30/2021] [Accepted: 01/14/2022] [Indexed: 05/04/2023]
Abstract
Application of biofertilizers containing living or dormant plant growth promoting bacterial cells is considered to be an ecofriendly alternative of chemical fertilizers for improved crop production. Biofertilizers opened myriad doors towards sustainable agriculture as they effectively reduce heavy use of chemical fertilizers and pesticides by keeping soils profuse in micro and macronutrients, regulating plant hormones and restraining infections caused by the pests present in soil without inflicting environmental damage. Generally, pathogenicity and biosafety testing of potential plant growth promoting bacteria (PGPB) are not performed, and the bacteria are reported to be beneficial solely on testing plant growth promoting characteristics. Unfortunately, some rhizosphere and endophytic PGPB are reported to be involved in various diseases. Such PGPB can also spread virulence and multidrug resistance genes carried by them through horizontal gene transfer to other bacteria in the environment. Therefore, deployment of such microbial populations in open fields could lead to disastrous side effects on human health and environment. Careless declaration of bacteria as PGPB is more pronounced in research publications. Here, we present a comprehensive report of declared PGPB which are reported to be pathogenic in other studies. This review also suggests the employment of some additional safety assessment protocols before reporting a bacteria as beneficial and product development.
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Affiliation(s)
- Mohsin Tariq
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
| | - Farwah Jameel
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
- National Institute for Biotechnology and Genetic Engineering, Faisalabad, Pakistan
| | - Usman Ijaz
- State Key Laboratory of Rice Biology and Ministry of Agriculture Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Muhammad Abdullah
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
| | - Kamran Rashid
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
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Root-Associated Entomopathogenic Fungi Modulate Their Host Plant's Photosystem II Photochemistry and Response to Herbivorous Insects. MOLECULES (BASEL, SWITZERLAND) 2021; 27:molecules27010207. [PMID: 35011439 PMCID: PMC8746981 DOI: 10.3390/molecules27010207] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 12/23/2021] [Accepted: 12/26/2021] [Indexed: 02/07/2023]
Abstract
The escalating food demand and loss to herbivores has led to increasing interest in using resistance-inducing microbes for pest control. Here, we evaluated whether root-inoculation with fungi that are otherwise known as entomopathogens improves tomato (Solanum lycopersicum) leaflets' reaction to herbivory by Spodoptera exigua (beet armyworm) larvae using chlorophyll fluorescence imaging. Plants were inoculated with Metarhizium brunneum or Beauveria bassiana, and photosystem II reactions were evaluated before and after larval feeding. Before herbivory, the fraction of absorbed light energy used for photochemistry (ΦPSII) was lower in M. brunneum-inoculated than in control plants, but not in B. bassiana-inoculated plants. After herbivory, however, ΦPSII increased in the fungal-inoculated plants compared with that before herbivory, similar to the reaction of control plants. At the same time, the fraction of energy dissipated as heat (ΦNPQ) decreased in the inoculated plants, resulting in an increased fraction of nonregulated energy loss (ΦNO) in M. brunneum. This indicates an increased singlet oxygen (1O2) formation not detected in B. bassiana-inoculated plants, showing that the two entomopathogenic fungi differentially modulate the leaflets' response to herbivory. Overall, our results show that M. brunneum inoculation had a negative effect on the photosynthetic efficiency before herbivory, while B. bassiana inoculation had no significant effect. However, S. exigua leaf biting activated the same compensatory PSII response mechanism in tomato plants of both fungal-inoculated treatments as in control plants.
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Bomle DV, Kiran A, Kumar JK, Nagaraj LS, Pradeep CK, Ansari MA, Alghamdi S, Kabrah A, Assaggaf H, Dablool AS, Murali M, Amruthesh KN, Udayashankar AC, Niranjana SR. Plants Saline Environment in Perception with Rhizosphere Bacteria Containing 1-Aminocyclopropane-1-Carboxylate Deaminase. Int J Mol Sci 2021; 22:ijms222111461. [PMID: 34768893 PMCID: PMC8584133 DOI: 10.3390/ijms222111461] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 11/16/2022] Open
Abstract
Soil salinity stress has become a serious roadblock for food production worldwide since it is one of the key factors affecting agricultural productivity. Salinity and drought are predicted to cause considerable loss of crops. To deal with this difficult situation, a variety of strategies have been developed, including plant breeding, plant genetic engineering, and a wide range of agricultural practices, including the use of plant growth-promoting rhizobacteria (PGPR) and seed biopriming techniques, to improve the plants' defenses against salinity stress, resulting in higher crop yields to meet future human food demand. In the present review, we updated and discussed the negative effects of salinity stress on plant morphological parameters and physio-biochemical attributes via various mechanisms and the beneficial roles of PGPR with 1-Aminocyclopropane-1-Carboxylate(ACC) deaminase activity as green bio-inoculants in reducing the impact of saline conditions. Furthermore, the applications of ACC deaminase-producing PGPR as a beneficial tool in seed biopriming techniques are updated and explored. This strategy shows promise in boosting quick seed germination, seedling vigor and plant growth uniformity. In addition, the contentious findings of the variation of antioxidants and osmolytes in ACC deaminase-producing PGPR treated plants are examined.
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Affiliation(s)
- Dhanashree Vijayrao Bomle
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
| | - Asha Kiran
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
| | - Jeevitha Kodihalli Kumar
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
| | - Lavanya Senapathyhalli Nagaraj
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
| | - Chamanahalli Kyathegowda Pradeep
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
| | - Mohammad Azam Ansari
- Department of Epidemic Disease Research, Institutes for Research and Medical Consultations (IRMC), Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia
- Correspondence: (M.A.A.); (A.C.U.); (S.R.N.)
| | - Saad Alghamdi
- Laboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah P.O. Box 715, Saudi Arabia; (S.A.); (A.K.); (H.A.)
| | - Ahmed Kabrah
- Laboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah P.O. Box 715, Saudi Arabia; (S.A.); (A.K.); (H.A.)
| | - Hamza Assaggaf
- Laboratory Medicine Department, Faculty of Applied Medical Sciences, Umm Al-Qura University, Makkah P.O. Box 715, Saudi Arabia; (S.A.); (A.K.); (H.A.)
| | - Anas S. Dablool
- Department of Public Health, Health Science College Al-Leith, Umm Al-Qura University, Makkah 21961, Saudi Arabia;
| | - Mahadevamurthy Murali
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (M.M.); (K.N.A.)
| | - Kestur Nagaraj Amruthesh
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (M.M.); (K.N.A.)
| | - Arakere Chunchegowda Udayashankar
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
- Correspondence: (M.A.A.); (A.C.U.); (S.R.N.)
| | - Siddapura Ramachandrappa Niranjana
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysore 570006, Karnataka, India; (D.V.B.); (A.K.); (J.K.K.); (L.S.N.); (C.K.P.)
- Correspondence: (M.A.A.); (A.C.U.); (S.R.N.)
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Saeed Q, Xiukang W, Haider FU, Kučerik J, Mumtaz MZ, Holatko J, Naseem M, Kintl A, Ejaz M, Naveed M, Brtnicky M, Mustafa A. Rhizosphere Bacteria in Plant Growth Promotion, Biocontrol, and Bioremediation of Contaminated Sites: A Comprehensive Review of Effects and Mechanisms. Int J Mol Sci 2021; 22:10529. [PMID: 34638870 PMCID: PMC8509026 DOI: 10.3390/ijms221910529] [Citation(s) in RCA: 73] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2021] [Revised: 09/23/2021] [Accepted: 09/27/2021] [Indexed: 01/23/2023] Open
Abstract
Agriculture in the 21st century is facing multiple challenges, such as those related to soil fertility, climatic fluctuations, environmental degradation, urbanization, and the increase in food demand for the increasing world population. In the meanwhile, the scientific community is facing key challenges in increasing crop production from the existing land base. In this regard, traditional farming has witnessed enhanced per acre crop yields due to irregular and injudicious use of agrochemicals, including pesticides and synthetic fertilizers, but at a substantial environmental cost. Another major concern in modern agriculture is that crop pests are developing pesticide resistance. Therefore, the future of sustainable crop production requires the use of alternative strategies that can enhance crop yields in an environmentally sound manner. The application of rhizobacteria, specifically, plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides has gained much attention from the scientific community. These rhizobacteria harbor a number of mechanisms through which they promote plant growth, control plant pests, and induce resistance to various abiotic stresses. This review presents a comprehensive overview of the mechanisms of rhizobacteria involved in plant growth promotion, biocontrol of pests, and bioremediation of contaminated soils. It also focuses on the effects of PGPR inoculation on plant growth survival under environmental stress. Furthermore, the pros and cons of rhizobacterial application along with future directions for the sustainable use of rhizobacteria in agriculture are discussed in depth.
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Affiliation(s)
- Qudsia Saeed
- College of Natural Resources and Environment, Northwest Agriculture and Forestry University, Yangling 712100, China;
| | - Wang Xiukang
- College of Life Sciences, Yan’an University, Yan’an 716000, China
| | - Fasih Ullah Haider
- College of Resources and Environmental Sciences, Gansu Agricultural University, Lanzhou 730070, China;
| | - Jiří Kučerik
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00 Brno, Czech Republic; (J.K.); (M.B.)
| | - Muhammad Zahid Mumtaz
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Defense Road, Lahore 54000, Pakistan;
| | - Jiri Holatko
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
| | - Munaza Naseem
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (M.N.); (M.N.)
| | - Antonin Kintl
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
- Agricultural Research, Ltd., Zahradni 400/1, 664 41 Troubsko, Czech Republic
| | - Mukkaram Ejaz
- School of Environmental and Municipal Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China;
| | - Muhammad Naveed
- Institute of Soil and Environmental Science, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan; (M.N.); (M.N.)
| | - Martin Brtnicky
- Institute of Chemistry and Technology of Environmental Protection, Faculty of Chemistry, Brno University of Technology, Purkynova 118, 612 00 Brno, Czech Republic; (J.K.); (M.B.)
- Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of AgriSciences, Mendel University in Brno, Zemedelska 1, 613 00 Brno, Czech Republic; (J.H.); (A.K.)
| | - Adnan Mustafa
- Biology Center CAS, SoWa RI, Na Sadkach 7, 370 05 České Budějovice, Czech Republic
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Sinno M, Ranesi M, Di Lelio I, Iacomino G, Becchimanzi A, Barra E, Molisso D, Pennacchio F, Digilio MC, Vitale S, Turrà D, Harizanova V, Lorito M, Woo SL. Selection of Endophytic Beauveria bassiana as a Dual Biocontrol Agent of Tomato Pathogens and Pests. Pathogens 2021; 10:pathogens10101242. [PMID: 34684191 PMCID: PMC8540488 DOI: 10.3390/pathogens10101242] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 09/03/2021] [Accepted: 09/18/2021] [Indexed: 11/18/2022] Open
Abstract
Endophytic fungi (EF) can enhance both plant growth and defense barriers against pests and pathogens, contributing to the reduction of chemical pesticides and fertilizers use in agriculture. Beauveria bassiana is an entomopathogenic fungus showing endophytism in several crops, often associated with a good capacity to limit the development of pests and disease agents. However, the diversity of the protective efficacy and plant response to different strains can be remarkable and needs to be carefully assessed for the successful and predictable use of these beneficial microorganisms. This study aims to select B. bassiana strains able to colonize tomato plants as endophytes as well as to control two important disease agents, Botrytis cinerea and Alternaria alternata, and the pest aphid, Macrosiphum euphorbiae. Nine wild-type isolates and one commercial strain were screened for endophytism, then further characterized for plant-growth promotion plus inhibition of disease development and pest infestation. Four isolates proved to have a good control activity against the biotic stressors tested, but only Bb716 was also able to promote plant growth. This work provides a simple workflow for the selection of beneficial EF, paving the way towards more effective use of B. bassiana in Integrate Pest Management (IPM) of tomato.
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Affiliation(s)
- Martina Sinno
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
- Correspondence: ; Tel.: +39-340-9284138
| | - Marta Ranesi
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Ilaria Di Lelio
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Giuseppina Iacomino
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Andrea Becchimanzi
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Eleonora Barra
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Donata Molisso
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Francesco Pennacchio
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Naples, Italy;
| | - Maria Cristina Digilio
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Naples, Italy;
| | - Stefania Vitale
- National Research Council, Institute for Sustainable Plant Protection, 80055 Portici, Italy;
| | - David Turrà
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Naples, Italy;
| | - Vili Harizanova
- Department of Entomology, Agricultural University-Plovdiv, 12, 4000 Plovdiv, Bulgaria;
| | - Matteo Lorito
- Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; (M.R.); (I.D.L.); (G.I.); (A.B.); (E.B.); (D.M.); (F.P.); (M.C.D.); (D.T.); (M.L.)
| | - Sheridan Lois Woo
- BAT Center-Interuniversity Center for Studies on Bioinspired Agro-Environmental Technology, University of Naples Federico II, 80055 Naples, Italy;
- Department of Pharmacy, University of Naples Federico II, 80131 Napoli, Italy
- Task Force on Microbiome Studies, University of Naples Federico II, 80131 Naples, Italy
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Kumar A, Singh SK, Kant C, Verma H, Kumar D, Singh PP, Modi A, Droby S, Kesawat MS, Alavilli H, Bhatia SK, Saratale GD, Saratale RG, Chung SM, Kumar M. Microbial Biosurfactant: A New Frontier for Sustainable Agriculture and Pharmaceutical Industries. Antioxidants (Basel) 2021; 10:1472. [PMID: 34573103 PMCID: PMC8469275 DOI: 10.3390/antiox10091472] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 09/08/2021] [Accepted: 09/13/2021] [Indexed: 11/16/2022] Open
Abstract
In the current scenario of changing climatic conditions and the rising global population, there is an urgent need to explore novel, efficient, and economical natural products for the benefit of humankind. Biosurfactants are one of the latest explored microbial synthesized biomolecules that have been used in numerous fields, including agriculture, pharmaceuticals, cosmetics, food processing, and environment-cleaning industries, as a source of raw materials, for the lubrication, wetting, foaming, emulsions formulations, and as stabilizing dispersions. The amphiphilic nature of biosurfactants have shown to be a great advantage, distributing themselves into two immiscible surfaces by reducing the interfacial surface tension and increasing the solubility of hydrophobic compounds. Furthermore, their eco-friendly nature, low or even no toxic nature, durability at higher temperatures, and ability to withstand a wide range of pH fluctuations make microbial surfactants preferable compared to their chemical counterparts. Additionally, biosurfactants can obviate the oxidation flow by eliciting antioxidant properties, antimicrobial and anticancer activities, and drug delivery systems, further broadening their applicability in the food and pharmaceutical industries. Nowadays, biosurfactants have been broadly utilized to improve the soil quality by improving the concentration of trace elements and have either been mixed with pesticides or applied singly on the plant surfaces for plant disease management. In the present review, we summarize the latest research on microbial synthesized biosurfactant compounds, the limiting factors of biosurfactant production, their application in improving soil quality and plant disease management, and their use as antioxidant or antimicrobial compounds in the pharmaceutical industries.
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Affiliation(s)
- Ajay Kumar
- Agriculture Research Organization, Volcani Center, Department of Postharvest Science, Rishon Lezzion 50250, Israel; (A.K.); (A.M.); (S.D.)
| | - Sandeep Kumar Singh
- Centre of Advance Study in Botany, Banaras Hindu University, Varanasi 221005, India; (S.K.S.); (D.K.); (P.P.S.)
| | - Chandra Kant
- Department of Botany, Dharma Samaj College, Aligarh 202001, India;
| | - Hariom Verma
- Department of Botany, B.R.D. Government Degree College, Sonbhadra, Duddhi 231218, India;
| | - Dharmendra Kumar
- Centre of Advance Study in Botany, Banaras Hindu University, Varanasi 221005, India; (S.K.S.); (D.K.); (P.P.S.)
| | - Prem Pratap Singh
- Centre of Advance Study in Botany, Banaras Hindu University, Varanasi 221005, India; (S.K.S.); (D.K.); (P.P.S.)
| | - Arpan Modi
- Agriculture Research Organization, Volcani Center, Department of Postharvest Science, Rishon Lezzion 50250, Israel; (A.K.); (A.M.); (S.D.)
| | - Samir Droby
- Agriculture Research Organization, Volcani Center, Department of Postharvest Science, Rishon Lezzion 50250, Israel; (A.K.); (A.M.); (S.D.)
| | - Mahipal Singh Kesawat
- Department of Genetics and Plant Breeding, Faculty of Agriculture, Sri Sri University, Cuttack 754006, India;
| | - Hemasundar Alavilli
- Department of Bioresources Engineering, Sejong University, Seoul 05006, Korea;
| | - Shashi Kant Bhatia
- Department of Biological Engineering, College of Engineering, Konkuk University, Seoul 05029, Korea;
| | | | - Rijuta Ganesh Saratale
- Research Institute of Biotechnology and Medical Converged Science, Dongguk University, Seoul 10326, Korea;
| | - Sang-Min Chung
- Department of Life Science, College of Life Science and Biotechnology, Dongguk University, Seoul 10326, Korea;
| | - Manu Kumar
- Department of Life Science, College of Life Science and Biotechnology, Dongguk University, Seoul 10326, Korea;
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Campos MD, Félix MDR, Patanita M, Materatski P, Varanda C. High throughput sequencing unravels tomato-pathogen interactions towards a sustainable plant breeding. HORTICULTURE RESEARCH 2021; 8:171. [PMID: 34333540 PMCID: PMC8325677 DOI: 10.1038/s41438-021-00607-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 06/08/2021] [Accepted: 06/15/2021] [Indexed: 05/24/2023]
Abstract
Tomato (Solanum lycopersicum) is one of the most economically important vegetables throughout the world. It is one of the best studied cultivated dicotyledonous plants, often used as a model system for plant research into classical genetics, cytogenetics, molecular genetics, and molecular biology. Tomato plants are affected by different pathogens such as viruses, viroids, fungi, oomycetes, bacteria, and nematodes, that reduce yield and affect product quality. The study of tomato as a plant-pathogen system helps to accelerate the discovery and understanding of the molecular mechanisms underlying disease resistance and offers the opportunity of improving the yield and quality of their edible products. The use of functional genomics has contributed to this purpose through both traditional and recently developed techniques, that allow the identification of plant key functional genes in susceptible and resistant responses, and the understanding of the molecular basis of compatible interactions during pathogen attack. Next-generation sequencing technologies (NGS), which produce massive quantities of sequencing data, have greatly accelerated research in biological sciences and offer great opportunities to better understand the molecular networks of plant-pathogen interactions. In this review, we summarize important research that used high-throughput RNA-seq technology to obtain transcriptome changes in tomato plants in response to a wide range of pathogens such as viruses, fungi, bacteria, oomycetes, and nematodes. These findings will facilitate genetic engineering efforts to incorporate new sources of resistance in tomato for protection against pathogens and are of major importance for sustainable plant-disease management, namely the ones relying on the plant's innate immune mechanisms in view of plant breeding.
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Affiliation(s)
- Maria Doroteia Campos
- MED - Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554, Évora, Portugal.
| | - Maria do Rosário Félix
- MED - Mediterranean Institute for Agriculture, Environment and Development & Departamento de Fitotecnia, Escola de Ciências e Tecnologia, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554, Évora, Portugal
| | - Mariana Patanita
- MED - Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554, Évora, Portugal
| | - Patrick Materatski
- MED - Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554, Évora, Portugal
| | - Carla Varanda
- MED - Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554, Évora, Portugal
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Endophytic bacterial strains modulated synthesis of lycopene and bioactive compounds in Solanum lycopersicum L. fruit. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.102088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Slathia S, Sharma YP, Hakla HR, Urfan M, Yadav NS, Pal S. Post-harvest Management of Alternaria Induced Rot in Tomato Fruits With Essential Oil of Zanthoxylum armatum DC. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.679830] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Alternaria fruit rot is a major disease caused by Alternaria alternata (Fr.) Keissl., a prolific fungal pathogen. Among post-harvest diseases of tomato, fruit rot induced by A. alternata is the most damaging. Antifungal agents are widely used to control post-harvest management of tomato fruits. However, negative impacts of fungicidal residues in edible fruits and vegetables on human health cannot be over ruled. Eco-friendly ways of controlling Alternaria rot in tomato fruits offer a novel way of tomato rot management. The current study proposes an alternate method in controlling tomato fruit rots through Zanthoxylum armatum DC essential oil (EO) application. Gas chromatography-mass spectrometry profiling showed eucalyptol and sabinene as major components of Z. armatum EO. Furthermore, EO applied (0.5–4.5 μl/ml) showed significant inhibition of A. alternata growth (p > 0.05) at 4.5 μl concentration tested. Lipid peroxidation assays revealed significant reduction in membrane damage in tomato fruits treated by EO compared to alone inoculated fruits with A. alternata. Elevated activities of superoxide dismutase, catalase, ascorbate peroxidase, and glutathione reductase coupled with enhanced antioxidants such as ascorbic acid, glutathione, proline, and total phenols in EO-treated fruits may be linked with better fruit rot management than control fruits inoculated with A. alternata-induced rot alone. Mycelia and spore production was dramatically reduced in EO applied tomato fruits over A. alternata alone in tomato fruits (p > 0.05). Interestingly, free radical scavenging activities of EO applied tomato fruits showed significant improvement compared to only pathogen-inoculated tomato fruits. Findings propose practical utility of Z. armatum EO as a plant-based antifungal for post-harvest management of Alternaria rot in tomato fruits.
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Yfanti P, Patakioutas G, Douma D, Lekka ME. In Vitro Antifungal Activity of Satureja horvatii ssp. macrophylla Against 3 Tomato Phytopathogenic Fungi. Nat Prod Commun 2021. [DOI: 10.1177/1934578x211025165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
The essential oil from the aerial part of Satureja horvatii spp. macrophylla, an endemic plant species of northwest Greece has been analyzed using GC-MS. Thirty-nine compounds were identified, among which carvacrol was the major constituent (46.8%). The antifungal effect of the essential oil was investigated in vitro against 3 phytopathogenic fungi of tomato, using fumigant and contact assays. Fumigant assay was more effective than contact assay against all phytopathogens. The essential oil inhibited completely the mycelial growth of Fusarium oxysporum f. sp. lycopersici (123 µL L-1 air) and Alternaria alternatα (100 µL L-1 air), while it significantly reduced the growth of Botrytis cinerea (91%).
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Affiliation(s)
- Paraskevi Yfanti
- Department of Agricultural, University of Ioannina, Greece
- Department of Chemistry, University of Ioannina, Greece
| | | | - Dimitra Douma
- Department of Agricultural, University of Ioannina, Greece
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Andreadelli A, Petrakis S, Tsoureki A, Tsiolas G, Michailidou S, Baltzopoulou P, van Merkestein R, Hodgson P, Sceats M, Karagiannakis G, Makris AM. Effects of Magnesium Oxide and Magnesium Hydroxide Microparticle Foliar Treatment on Tomato PR Gene Expression and Leaf Microbiome. Microorganisms 2021; 9:microorganisms9061217. [PMID: 34199815 PMCID: PMC8228823 DOI: 10.3390/microorganisms9061217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 05/31/2021] [Accepted: 06/02/2021] [Indexed: 11/20/2022] Open
Abstract
Recently, metal oxides and magnesium hydroxide nanoparticles (NPs) with high surface-to-volume ratios were shown to possess antibacterial properties with applications in biomedicine and agriculture. To assess recent observations from field trials on tomatoes showing resistance to pathogen attacks, porous micron-scale particles composed of nano-grains of MgO were hydrated and sprayed on the leaves of healthy tomato (Solanum lycopersicum) plants in a 20-day program. The results showed that the spray induced (a) a modest and selective stress gene response that was consistent with the absence of phytotoxicity and the production of salicylic acid as a signalling response to pathogens; (b) a shift of the phylloplane microbiota from near 100% dominance by Gram (−) bacteria, leaving extremophiles and cyanobacteria to cover the void; and (c) a response of the fungal leaf phylloplane that showed that the leaf epiphytome was unchanged but the fungal load was reduced by about 70%. The direct microbiome changes together with the low level priming of the plant’s immune system may explain the previously observed resistance to pathogen assaults in field tomato plants sprayed with the same hydrated porous micron-scale particles.
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Affiliation(s)
- Aggeliki Andreadelli
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
| | - Spyros Petrakis
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
| | - Antiopi Tsoureki
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
| | - George Tsiolas
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
| | - Sofia Michailidou
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
| | - Penelope Baltzopoulou
- Chemical Process & Energy Resources Institute, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (P.B.); (G.K.)
| | | | - Philip Hodgson
- Calix Limited, Pymble, NSW 2073, Australia; (R.v.M.); (P.H.); (M.S.)
| | - Mark Sceats
- Calix Limited, Pymble, NSW 2073, Australia; (R.v.M.); (P.H.); (M.S.)
| | - George Karagiannakis
- Chemical Process & Energy Resources Institute, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (P.B.); (G.K.)
| | - Antonios M. Makris
- Institute of Applied Biosciences, Centre for Research & Technology, Hellas (CERTH), 570 01 Thessaloniki, Greece; (A.A.); (S.P.); (A.T.); (G.T.); (S.M.)
- Correspondence: ; Tel.: +30-2311-257-541
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Anzalone A, Di Guardo M, Bella P, Ghadamgahi F, Dimaria G, Zago R, Cirvilleri G, Catara V. Bioprospecting of Beneficial Bacteria Traits Associated With Tomato Root in Greenhouse Environment Reveals That Sampling Sites Impact More Than the Root Compartment. FRONTIERS IN PLANT SCIENCE 2021; 12:637582. [PMID: 33927735 PMCID: PMC8078776 DOI: 10.3389/fpls.2021.637582] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 03/10/2021] [Indexed: 05/06/2023]
Abstract
Tomato is subject to several diseases that affect both field- and greenhouse-grown crops. To select cost-effective potential biocontrol agents, we used laboratory throughput screening to identify bacterial strains with versatile characteristics suitable for multipurpose uses. The natural diversity of tomato root-associated bacterial communities was bioprospected under a real-world environment represented by an intensive tomato cultivation area characterized by extraseasonal productions in the greenhouse. Approximately 400 tomato root-associated bacterial isolates, in majority Gram-negative bacteria, were isolated from three compartments: the soil close to the root surface (rhizosphere, R), the root surface (rhizoplane, RP), and the root interior (endorhizosphere, E). A total of 33% of the isolates produced siderophores and were able to solubilize phosphates and grow on NA with 8% NaCl. A total of 30% of the root-associated bacteria showed antagonistic activity against all the tomato pathogens tested, i.e., Clavibacter michiganesis pv. michiganensis, Pseudomonas syringae pv. tomato, Pseudomonas corrugata and Xanthomonas euvesicatoria pv. perforans, and Fusarium oxysporum f. sp. lycopersici. We found that the sampling site rather than the root compartment of isolation influenced bacterial composition in terms of analyzed phenotype. This was demonstrated through a diversity analysis including general characteristics and PGPR traits, as well as biocontrol activity in vitro. Analysis of 16S rRNA gene (rDNA) sequencing of 77 culturable endophytic bacteria that shared multiple beneficial activity revealed a predominance of bacteria in Bacillales, Enterobacteriales, and Pseudomonadales. Their in vitro antagonistic activity showed that Bacillus species were significantly more active than the isolates in the other taxonomic group. In planta activity against phytopathogenic bacteria of a subset of Bacillus and Pseudomonas isolates was also assessed.
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Affiliation(s)
- Alice Anzalone
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Mario Di Guardo
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Patrizia Bella
- Department of Agricultural, Food and Forest Sciences, University of Palermo, Palermo, Italy
| | - Farideh Ghadamgahi
- Department of Plant Protection, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad, Iran
| | - Giulio Dimaria
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | | | - Gabriella Cirvilleri
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Vittoria Catara
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
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Khanna K, Kohli SK, Ohri P, Bhardwaj R. Plants-nematodes-microbes crosstalk within soil: A trade-off among friends or foes. Microbiol Res 2021; 248:126755. [PMID: 33845302 DOI: 10.1016/j.micres.2021.126755] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Revised: 03/18/2021] [Accepted: 03/27/2021] [Indexed: 11/28/2022]
Abstract
Plants interact with enormous biotic and abiotic components within ecosystem. For instance, microbes, insects, herbivores, animals, nematodes etc. In general, these interactions are studied independently with plants, that condenses only specific information about the interaction. However, the limitation to study the cross-interactions masks the collaborative role of organisms within ecosystem. Beneficial microbes are most prominent organisms that are needed to be studied due to their bidirectional nature towards plants. Fascinatingly, Plant-Parasitic Nematodes (PPNs) have been profoundly observed to cause mass destruction of agricultural crops worldwide. The huge demand for agriculture for present-day population requires optimization of production potential by curbing the damage caused by PPNs. Chemical nematicides combats their proliferation, but their extended usage has abruptly affected flora, fauna and human populations. Because of consistent pressing issues in regard to environment, the use of biocontrol agents are most favourable alternatives for managing agriculture. However, this association is somehow, tug of war, and understanding of plant-nematode-microbial relation would enable the agriculturists to monitor the overall development of plants along with limiting the use of agrochemicals. Soil microbes are contemporary bio-nematicides emerging in the market, that stimulates the plant growth and impedes PPNs populations. They form natural enemies and trap nematodes, henceforth, it is crucial to understand these interactions for ecological and biotechnological perspectives for commercial use. Moreover, acquiring the diversity of their relationship and molecular-based mechanisms, outlines their cascade of signaling events to serve as biotechnological ecosystem engineers. The omics based mechanisms encompassing hormone gene regulatory pathways and elicitors released by microbes are able to modulate pathogenesis-related (PR) genes within plants. This is achieved via Induced Systemic Resistance (ISR) or acquired systemic channels. Taking into account all these validations, the present review mainly advocates the relationship among microbes and nematodes in plants. It is believed that this review will boost zest and zeal within researchers to effectively understand the plant-nematodes-microbes relations and their ecological perspectives.
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Affiliation(s)
- Kanika Khanna
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
| | - Sukhmeen Kaur Kohli
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, Punjab, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
| | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, Punjab, India.
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