1
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Raj P, Paidi SK, Conway L, Chatterjee A, Barman I. CellSNAP: a fast, accurate algorithm for 3D cell segmentation in quantitative phase imaging. JOURNAL OF BIOMEDICAL OPTICS 2024; 29:S22706. [PMID: 38638450 PMCID: PMC11025678 DOI: 10.1117/1.jbo.29.s2.s22706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 03/22/2024] [Accepted: 03/28/2024] [Indexed: 04/20/2024]
Abstract
Significance Three-dimensional quantitative phase imaging (QPI) has rapidly emerged as a complementary tool to fluorescence imaging, as it provides an objective measure of cell morphology and dynamics, free of variability due to contrast agents. It has opened up new directions of investigation by providing systematic and correlative analysis of various cellular parameters without limitations of photobleaching and phototoxicity. While current QPI systems allow the rapid acquisition of tomographic images, the pipeline to analyze these raw three-dimensional (3D) tomograms is not well-developed. We focus on a critical, yet often underappreciated, step of the analysis pipeline that of 3D cell segmentation from the acquired tomograms. Aim We report the CellSNAP (Cell Segmentation via Novel Algorithm for Phase Imaging) algorithm for the 3D segmentation of QPI images. Approach The cell segmentation algorithm mimics the gemstone extraction process, initiating with a coarse 3D extrusion from a two-dimensional (2D) segmented mask to outline the cell structure. A 2D image is generated, and a segmentation algorithm identifies the boundary in the x - y plane. Leveraging cell continuity in consecutive z -stacks, a refined 3D segmentation, akin to fine chiseling in gemstone carving, completes the process. Results The CellSNAP algorithm outstrips the current gold standard in terms of speed, robustness, and implementation, achieving cell segmentation under 2 s per cell on a single-core processor. The implementation of CellSNAP can easily be parallelized on a multi-core system for further speed improvements. For the cases where segmentation is possible with the existing standard method, our algorithm displays an average difference of 5% for dry mass and 8% for volume measurements. We also show that CellSNAP can handle challenging image datasets where cells are clumped and marred by interferogram drifts, which pose major difficulties for all QPI-focused AI-based segmentation tools. Conclusion Our proposed method is less memory intensive and significantly faster than existing methods. The method can be easily implemented on a student laptop. Since the approach is rule-based, there is no need to collect a lot of imaging data and manually annotate them to perform machine learning based training of the model. We envision our work will lead to broader adoption of QPI imaging for high-throughput analysis, which has, in part, been stymied by a lack of suitable image segmentation tools.
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Affiliation(s)
- Piyush Raj
- Johns Hopkins University, Department of Mechanical Engineering, Baltimore, Maryland, United States
| | - Santosh Kumar Paidi
- Johns Hopkins University, Department of Mechanical Engineering, Baltimore, Maryland, United States
| | - Lauren Conway
- Johns Hopkins University, Department of Chemical and Biomolecular Engineering, Baltimore, Maryland, United States
| | - Arnab Chatterjee
- Johns Hopkins University, Department of Mechanical Engineering, Baltimore, Maryland, United States
| | - Ishan Barman
- Johns Hopkins University, Department of Mechanical Engineering, Baltimore, Maryland, United States
- The Johns Hopkins University, School of Medicine, The Russell H. Morgan Department of Radiology and Radiological Science, Baltimore, Maryland, United States
- Johns Hopkins University, Department of Oncology, Baltimore, Maryland, United States
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2
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Raj P, Gupta H, Anantha P, Barman I. Cell-TIMP: Cellular Trajectory Inference based on Morphological Parameter. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.18.590109. [PMID: 38712120 PMCID: PMC11071304 DOI: 10.1101/2024.04.18.590109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Cellular morphology, shaped by various genetic and environmental influences, is pivotal to studying experimental cell biology, necessitating precise measurement and analysis techniques. Traditional approaches, which rely on geometric metrics derived from stained images, encounter obstacles stemming from both the imaging and analytical domains. Staining processes can disrupt the cell's natural state and diminish accuracy due to photobleaching, while conventional analysis techniques, which categorize cells based on shape to discern pathophysiological conditions, often fail to capture the continuous and asynchronous nature of biological processes such as cell differentiation, immune responses, and cancer progression. In this work, we propose the use of quantitative phase imaging for morphological assessment due to its label-free nature. For analysis, we repurposed the genomic analysis toolbox to perform trajectory inference analysis purely based on morphology information. We applied the developed framework to study the progression of leukemia and breast cancer metastasis. Our approach revealed a clear pattern of morphological evolution tied to the diseases' advancement, highlighting the efficacy of our method in identifying functionally significant shape changes where conventional techniques falter. This advancement offers a fresh perspective on analyzing cellular morphology and holds significant potential for the broader research community, enabling a deeper understanding of complex biological dynamics.
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Affiliation(s)
- Piyush Raj
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Himanshu Gupta
- Centre for Applied Autonomous Sensor Systems (AASS), Örebro University, Örebro, Sweden
| | - Pooja Anantha
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Ishan Barman
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
- The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University, School of Medicine, Baltimore, Maryland, USA
- Department of Oncology, Johns Hopkins University, Baltimore, Maryland, USA
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3
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Nolte DD. Coherent light scattering from cellular dynamics in living tissues. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2024; 87:036601. [PMID: 38433567 DOI: 10.1088/1361-6633/ad2229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 01/24/2024] [Indexed: 03/05/2024]
Abstract
This review examines the biological physics of intracellular transport probed by the coherent optics of dynamic light scattering from optically thick living tissues. Cells and their constituents are in constant motion, composed of a broad range of speeds spanning many orders of magnitude that reflect the wide array of functions and mechanisms that maintain cellular health. From the organelle scale of tens of nanometers and upward in size, the motion inside living tissue is actively driven rather than thermal, propelled by the hydrolysis of bioenergetic molecules and the forces of molecular motors. Active transport can mimic the random walks of thermal Brownian motion, but mean-squared displacements are far from thermal equilibrium and can display anomalous diffusion through Lévy or fractional Brownian walks. Despite the average isotropic three-dimensional environment of cells and tissues, active cellular or intracellular transport of single light-scattering objects is often pseudo-one-dimensional, for instance as organelle displacement persists along cytoskeletal tracks or as membranes displace along the normal to cell surfaces, albeit isotropically oriented in three dimensions. Coherent light scattering is a natural tool to characterize such tissue dynamics because persistent directed transport induces Doppler shifts in the scattered light. The many frequency-shifted partial waves from the complex and dynamic media interfere to produce dynamic speckle that reveals tissue-scale processes through speckle contrast imaging and fluctuation spectroscopy. Low-coherence interferometry, dynamic optical coherence tomography, diffusing-wave spectroscopy, diffuse-correlation spectroscopy, differential dynamic microscopy and digital holography offer coherent detection methods that shed light on intracellular processes. In health-care applications, altered states of cellular health and disease display altered cellular motions that imprint on the statistical fluctuations of the scattered light. For instance, the efficacy of medical therapeutics can be monitored by measuring the changes they induce in the Doppler spectra of livingex vivocancer biopsies.
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Affiliation(s)
- David D Nolte
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, United States of America
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4
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Baskaran RKR, Link A, Porr B, Franke T. Classification of chemically modified red blood cells in microflow using machine learning video analysis. SOFT MATTER 2024; 20:952-958. [PMID: 38088860 DOI: 10.1039/d3sm01337e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
We classify native and chemically modified red blood cells with an AI based video classifier. Using TensorFlow video analysis enables us to capture not only the morphology of the cell but also the trajectories of motion of individual red blood cells and their dynamics. We chemically modify cells in three different ways to model different pathological conditions and obtain classification accuracies for all three classification tasks of more than 90% between native and modified cells. Unlike standard cytometers that are based on immunophenotyping our microfluidic cytometer allows to rapidly categorize cells without any fluorescence labels simply by analysing the shape and flow of red blood cells.
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Affiliation(s)
- R K Rajaram Baskaran
- Division of Biomedical Engineering, School of Engineering, University of Glasgow, Oakfield Avenue, Glasgow G12 8LT, UK.
| | - A Link
- Division of Biomedical Engineering, School of Engineering, University of Glasgow, Oakfield Avenue, Glasgow G12 8LT, UK.
| | - B Porr
- Division of Biomedical Engineering, School of Engineering, University of Glasgow, Oakfield Avenue, Glasgow G12 8LT, UK.
| | - T Franke
- Division of Biomedical Engineering, School of Engineering, University of Glasgow, Oakfield Avenue, Glasgow G12 8LT, UK.
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5
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Kang S, Zhou R, Brelen M, Mak HK, Lin Y, So PTC, Yaqoob Z. Mapping nanoscale topographic features in thick tissues with speckle diffraction tomography. LIGHT, SCIENCE & APPLICATIONS 2023; 12:200. [PMID: 37607903 PMCID: PMC10444882 DOI: 10.1038/s41377-023-01240-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 07/11/2023] [Accepted: 07/19/2023] [Indexed: 08/24/2023]
Abstract
Resolving three-dimensional morphological features in thick specimens remains a significant challenge for label-free imaging. We report a new speckle diffraction tomography (SDT) approach that can image thick biological specimens with ~500 nm lateral resolution and ~1 μm axial resolution in a reflection geometry. In SDT, multiple-scattering background is rejected through spatiotemporal gating provided by dynamic speckle-field interferometry, while depth-resolved refractive index maps are reconstructed by developing a comprehensive inverse-scattering model that also considers specimen-induced aberrations. Benefiting from the high-resolution and full-field quantitative imaging capabilities of SDT, we successfully imaged red blood cells and quantified their membrane fluctuations behind a turbid medium with a thickness of 2.8 scattering mean-free paths. Most importantly, we performed volumetric imaging of cornea inside an ex vivo rat eye and quantified its optical properties, including the mapping of nanoscale topographic features of Dua's and Descemet's membranes that had not been previously visualized.
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Affiliation(s)
- Sungsam Kang
- Laser Biomedical Research Center, G. R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Renjie Zhou
- Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, China.
| | - Marten Brelen
- Department of Ophthalmology and Visual Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Heather K Mak
- Department of Ophthalmology and Visual Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Yuechuan Lin
- Laser Biomedical Research Center, G. R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Peter T C So
- Laser Biomedical Research Center, G. R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
- Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
- Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Zahid Yaqoob
- Laser Biomedical Research Center, G. R. Harrison Spectroscopy Laboratory, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
- Department of Biomedical Engineering, Boston University, Boston, MA, 02215, USA.
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6
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Raj P, Paidi S, Conway L, Chatterjee A, Barman I. CellSNAP: A fast, accurate algorithm for 3D cell segmentation in quantitative phase imaging. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.24.550376. [PMID: 37546926 PMCID: PMC10402093 DOI: 10.1101/2023.07.24.550376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/08/2023]
Abstract
Quantitative phase imaging (QPI) has rapidly emerged as a complementary tool to fluorescence imaging, as it provides an objective measure of cell morphology and dynamics, free of variability due to contrast agents. In particular, three-dimensional (3D) tomographic imaging of live cells has opened up new directions of investigation by providing systematic and correlative analysis of various cellular parameters without limitations of photobleaching and phototoxicity. While current QPI systems allow the rapid acquisition of tomographic images, the pipeline to analyze these raw 3D tomograms is not well-developed. This work focuses on a critical, yet often underappreciated, step of the analysis pipeline, that of 3D cell segmentation from the acquired tomograms. The current method employed for such tasks is the Otsu-based 3D watershed algorithm, which works well for isolated cells; however, it is very challenging to draw boundaries when the cells are clumped. This process is also memory intensive since the processing requires computation on a 3D stack of images. We report the CellSNAP (Cell Segmentation via Novel Algorithm for Phase Imaging) algorithm for the segmentation of QPI images, which outstrips the current gold standard in terms of speed, robustness, and implementation, achieving cell segmentation under 2 seconds per cell on a single-core processor. The implementation of CellSNAP can easily be parallelized on a multi-core system for further speed improvements. For the cases where segmentation is possible with the existing standard method, our algorithm displays an average difference of 5% for dry mass and 8% for volume measurements. We also show that CellSNAP can handle challenging image datasets where cells are clumped and marred by interferogram drifts, which pose major difficulties for all QPI-focused segmentation tools. We envision our work will lead to the broader adoption of QPI imaging for high-throughput analysis, which has, in part, been stymied by a lack of suitable image segmentation tools.
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Affiliation(s)
- Piyush Raj
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Santosh Paidi
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Lauren Conway
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Arnab Chatterjee
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Ishan Barman
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
- The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University, School of Medicine, Baltimore, Maryland, USA
- Department of Oncology, Johns Hopkins University, Baltimore, Maryland, USA
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7
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Bhatt S, Butola A, Kumar A, Thapa P, Joshi A, Jadhav S, Singh N, Prasad DK, Agarwal K, Mehta DS. Single-shot multispectral quantitative phase imaging of biological samples using deep learning. APPLIED OPTICS 2023; 62:3989-3999. [PMID: 37706710 DOI: 10.1364/ao.482788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Accepted: 04/18/2023] [Indexed: 09/15/2023]
Abstract
Multispectral quantitative phase imaging (MS-QPI) is a high-contrast label-free technique for morphological imaging of the specimens. The aim of the present study is to extract spectral dependent quantitative information in single-shot using a highly spatially sensitive digital holographic microscope assisted by a deep neural network. There are three different wavelengths used in our method: λ=532, 633, and 808 nm. The first step is to get the interferometric data for each wavelength. The acquired datasets are used to train a generative adversarial network to generate multispectral (MS) quantitative phase maps from a single input interferogram. The network was trained and validated on two different samples: the optical waveguide and MG63 osteosarcoma cells. Validation of the present approach is performed by comparing the predicted MS phase maps with numerically reconstructed (F T+T I E) phase maps and quantifying with different image quality assessment metrices.
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8
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Matthews K, Lamoureux ES, Myrand-Lapierre ME, Duffy SP, Ma H. Technologies for measuring red blood cell deformability. LAB ON A CHIP 2022; 22:1254-1274. [PMID: 35266475 DOI: 10.1039/d1lc01058a] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Human red blood cells (RBCs) are approximately 8 μm in diameter, but must repeatedly deform through capillaries as small as 2 μm in order to deliver oxygen to all parts of the body. The loss of this capability is associated with the pathology of many diseases, and is therefore a potential biomarker for disease status and treatment efficacy. Measuring RBC deformability is a difficult problem because of the minute forces (∼pN) that must be exerted on these cells, as well as the requirements for throughput and multiplexing. The development of technologies for measuring RBC deformability date back to the 1960s with the development of micropipette aspiration, ektacytometry, and the cell transit analyzer. In the past 10 years, significant progress has been made using microfluidics by leveraging the ability to precisely control fluid flow through microstructures at the size scale of individual RBCs. These technologies have now surpassed traditional methods in terms of sensitivity, throughput, consistency, and ease of use. As a result, these efforts are beginning to move beyond feasibility studies and into applications to enable biomedical discoveries. In this review, we provide an overview of both traditional and microfluidic techniques for measuring RBC deformability. We discuss the capabilities of each technique and compare their sensitivity, throughput, and robustness in measuring bulk and single-cell RBC deformability. Finally, we discuss how these tools could be used to measure changes in RBC deformability in the context of various applications including pathologies caused by malaria and hemoglobinopathies, as well as degradation during storage in blood bags prior to blood transfusions.
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Affiliation(s)
- Kerryn Matthews
- Department of Mechanical Engineering, University of British Columbia, 2054-6250 Applied Science Lane, Vancouver, BC, V6T 1Z4, Canada.
- Centre for Blood Research, University of British Columbia, Vancouver, BC, Canada
| | - Erik S Lamoureux
- Department of Mechanical Engineering, University of British Columbia, 2054-6250 Applied Science Lane, Vancouver, BC, V6T 1Z4, Canada.
- Centre for Blood Research, University of British Columbia, Vancouver, BC, Canada
| | - Marie-Eve Myrand-Lapierre
- Department of Mechanical Engineering, University of British Columbia, 2054-6250 Applied Science Lane, Vancouver, BC, V6T 1Z4, Canada.
| | - Simon P Duffy
- Centre for Blood Research, University of British Columbia, Vancouver, BC, Canada
- British Columbia Institute of Technology, Vancouver, BC, Canada
| | - Hongshen Ma
- Department of Mechanical Engineering, University of British Columbia, 2054-6250 Applied Science Lane, Vancouver, BC, V6T 1Z4, Canada.
- Centre for Blood Research, University of British Columbia, Vancouver, BC, Canada
- Department of Urologic Science, University of British Columbia, Vancouver, BC, Canada
- Vancouver Prostate Centre, Vancouver General Hospital, Vancouver, BC, Canada
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9
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Guzman-Sepulveda JR, Batarseh M, Wu R, DeCampli WM, Dogariu A. Passive high-frequency microrheology of blood. SOFT MATTER 2022; 18:2452-2461. [PMID: 35279707 PMCID: PMC8941587 DOI: 10.1039/d1sm01726h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Indicative of various pathologies, blood properties are under intense scrutiny. The hemorheological characteristics are traditionally gauged by bulk, low-frequency indicators that average out critical information about the complex, multi-scale, and multi-component structure. In particular, one cannot discriminate between the erythrocytes contribution to global rheology and the impact of plasma. Nevertheless, in their fast stochastic movement, before they encounter each other, the erythrocytes probe the subtle viscoelasticity of their protein-rich environment. Thus, if these short time scales can be resolved experimentally, the plasma properties could be determined without having to separate the blood components; the blood is practically testing itself. This microrheological description of blood plasma provides a direct link between the composition of whole blood and its coagulability status. We present a parametric model for the viscoelasticity of plasma, which is probed by the erythrocytes over frequency ranges of kilohertz in a picoliter-sized volume. The model is validated both in vitro, using artificial hemo-systems where the composition is controlled, as well as on whole blood where continuous measurements provide real-time information. We also discuss the possibility of using this passive microrheology as an in vivo assay for clinically relevant situations where the blood clotting condition must be observed and managed continuously for diagnosis or during therapeutic procedures at different stages of hemostatic and thrombotic processes.
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Affiliation(s)
- Jose Rafael Guzman-Sepulveda
- CREOL, The College of Optics and Photonics, University of Central Florida, 4304 Scorpius, Orlando, Florida, 32816, USA.
| | - Mahed Batarseh
- CREOL, The College of Optics and Photonics, University of Central Florida, 4304 Scorpius, Orlando, Florida, 32816, USA.
| | - Ruitao Wu
- CREOL, The College of Optics and Photonics, University of Central Florida, 4304 Scorpius, Orlando, Florida, 32816, USA.
| | - William M DeCampli
- Pediatric Cardiothoracic Surgery, The Heart Center, Arnold Palmer Hospital for Children, Orlando, Florida, USA
- College of Medicine, University of Central Florida, Orlando, Florida, USA
| | - Aristide Dogariu
- CREOL, The College of Optics and Photonics, University of Central Florida, 4304 Scorpius, Orlando, Florida, 32816, USA.
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10
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Mierke CT. Viscoelasticity, Like Forces, Plays a Role in Mechanotransduction. Front Cell Dev Biol 2022; 10:789841. [PMID: 35223831 PMCID: PMC8864183 DOI: 10.3389/fcell.2022.789841] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 01/11/2022] [Indexed: 12/13/2022] Open
Abstract
Viscoelasticity and its alteration in time and space has turned out to act as a key element in fundamental biological processes in living systems, such as morphogenesis and motility. Based on experimental and theoretical findings it can be proposed that viscoelasticity of cells, spheroids and tissues seems to be a collective characteristic that demands macromolecular, intracellular component and intercellular interactions. A major challenge is to couple the alterations in the macroscopic structural or material characteristics of cells, spheroids and tissues, such as cell and tissue phase transitions, to the microscopic interferences of their elements. Therefore, the biophysical technologies need to be improved, advanced and connected to classical biological assays. In this review, the viscoelastic nature of cytoskeletal, extracellular and cellular networks is presented and discussed. Viscoelasticity is conceptualized as a major contributor to cell migration and invasion and it is discussed whether it can serve as a biomarker for the cells’ migratory capacity in several biological contexts. It can be hypothesized that the statistical mechanics of intra- and extracellular networks may be applied in the future as a powerful tool to explore quantitatively the biomechanical foundation of viscoelasticity over a broad range of time and length scales. Finally, the importance of the cellular viscoelasticity is illustrated in identifying and characterizing multiple disorders, such as cancer, tissue injuries, acute or chronic inflammations or fibrotic diseases.
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11
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Zhao Y, Gu L, Sun H, Sha X, Li WJ. Physical Cytometry: Detecting Mass-Related Properties of Single Cells. ACS Sens 2022; 7:21-36. [PMID: 34978200 DOI: 10.1021/acssensors.1c01787] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The physical properties of a single cell, such as mass, volume, and density, are important indications of the cell's metabolic characteristics and homeostasis. Precise measurement of a single cell's mass has long been a challenge due to its minute size. It is only in the past 10 years that a variety of instruments for measuring living cellular mass have emerged with the development of MEMS, microfluidics, and optics technologies. In this review, we discuss the current developments of physical cytometry for quantifying mass-related physical properties of single cells, highlighting the working principle, applications, and unique merits. The review mainly covers these measurement methods: single-cell mass cytometry, levitation image cytometry, suspended microchannel resonator, phase-shifting interferometry, and opto-electrokinetics cell manipulation. Comparisons are made between these methods in terms of throughput, content, invasiveness, compatibility, and precision. Some typical applications of these methods in pathological diagnosis, drug efficacy evaluation, disease treatment, and other related fields are also discussed in this work.
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Affiliation(s)
- Yuliang Zhao
- School of Control Engineering, Northeastern University, Qinhuangdao 066004, China
| | - Lijia Gu
- School of Control Engineering, Northeastern University, Qinhuangdao 066004, China
| | - Hui Sun
- Department of Mechanical Engineering, City University of Hong Kong, Kowloon, 999077 Hong Kong, China
| | - Xiaopeng Sha
- School of Control Engineering, Northeastern University, Qinhuangdao 066004, China
| | - Wen Jung Li
- Department of Mechanical Engineering, City University of Hong Kong, Kowloon, 999077 Hong Kong, China
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12
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Sirotin MA, Romodina MN, Lyubin EV, Soboleva IV, Fedyanin AA. Single-cell all-optical coherence elastography with optical tweezers. BIOMEDICAL OPTICS EXPRESS 2022; 13:14-25. [PMID: 35154850 PMCID: PMC8803033 DOI: 10.1364/boe.444813] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/19/2021] [Accepted: 11/22/2021] [Indexed: 06/01/2023]
Abstract
The elastic properties of cells are important for many of their functions, however the development of label free noninvasive cellular elastography method is a challenging topic. We present a novel single-cell all-optical coherence elastography method that combines optical tweezers producing mechanical excitation on the cell membrane or organelle and phase-sensitive optical coherence microscopy measuring sample response and determining its mechanical properties. The method allows living cells imaging with a lateral resolution of 0.5 μm and an axial resolution up to 10 nm, making it possible to detect nanometer displacements of the cell organelles and to record the propagation of mechanical wave along the cell membrane in response to optical tweezers excitation. We also demonstrate applicability of the method on single living red blood cells, yeast and cancer cells. The all-optical nature of the method developed makes it a promising and easily applicable tool for studying cellular and subcellular mechanics in vivo.
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Affiliation(s)
- Maxim A. Sirotin
- Faculty of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Maria N. Romodina
- Faculty of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Evgeny V. Lyubin
- Faculty of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
| | - Irina V. Soboleva
- Faculty of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Moscow 119071, Russia
| | - Andrey A. Fedyanin
- Faculty of Physics, Lomonosov Moscow State University, Moscow 119991, Russia
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13
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Son M, Lee YS, Lee MJ, Park Y, Bae HR, Lee SY, Shin MG, Yang S. Effects of osmolality and solutes on the morphology of red blood cells according to three-dimensional refractive index tomography. PLoS One 2021; 16:e0262106. [PMID: 34972199 PMCID: PMC8719701 DOI: 10.1371/journal.pone.0262106] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 12/16/2021] [Indexed: 11/18/2022] Open
Abstract
Phosphate-buffered saline (PBS) and Alsever's solution (AS) are frequently used as media in blood-related studies, while 0.9% normal saline (NS) is frequently used in transfusion medicine. Despite the frequent use, the effects of these solutions on the shape and volume of red blood cells (RBCs) have not been reported. We collected blood samples from five healthy adults and used three-dimensional refractive index tomography to investigate the changes in the morphology of RBCs caused by changes in osmolality and solutes at the single-cell level. After diluting 2 μL of RBCs 200-fold with each solution (PBS, AS, and 0.9% NS), 40 randomly selected RBCs were microscopically observed. RBC shape was measured considering sphericity, which is a dimensionless quantity ranging from 0 (flat) to 1 (spherical). RBCs in plasma or AS showed a biconcave shape with a small sphericity, whereas those in 0.9% NS or PBS showed a spherical shape with a large sphericity. Moreover, we confirmed that sodium chloride alone could not elicit the biconcave shape of RBCs, which could be maintained only in the presence of an osmotic pressure-maintaining substance, such as glucose or mannitol. Although 0.9% NS solution is one of the most commonly used fluids in hematology and transfusion medicine, RBCs in 0.9% NS or PBS are not biconcave. Therefore, as the debate on the use of NS continues, future clinical studies or applications should consider the effect of glucose or mannitol on the shape of RBCs.
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Affiliation(s)
- Minkook Son
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Ye Sung Lee
- School of Mechanical Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
| | - Mahn Jae Lee
- Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - YongKeun Park
- Department of Physics, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea
| | - Hae-Rahn Bae
- Department of Physiology, College of Medicine, Dong-A University, Busan, Republic of Korea
| | - Seung Yeob Lee
- Department of Laboratory Medicine, Jeonbuk National University Medical School and Hospital, Jeonju, Republic of Korea
| | - Myung-Geun Shin
- Department of Laboratory Medicine, Chonnam National University Medical School and Chonnam National University Hwasun Hospital, Hwasun, Republic of Korea
| | - Sung Yang
- Department of Biomedical Science and Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
- School of Mechanical Engineering, Gwangju Institute of Science and Technology, Gwangju, Republic of Korea
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14
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The effect of pupil transmittance on axial resolution of reflection phase microscopy. Sci Rep 2021; 11:22774. [PMID: 34815473 PMCID: PMC8610988 DOI: 10.1038/s41598-021-02188-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 11/09/2021] [Indexed: 11/23/2022] Open
Abstract
A reflection phase microscope (RPM) can be equipped with the capability of depth selection by employing a gating mechanism. However, it is difficult to achieve an axial resolution close to the diffraction limit in real implementation. Here, we systematically investigated the uneven interference contrast produced by pupil transmittance of the objective lens and found that it was the main cause of the practical limit that prevents the axial resolution from reaching its diffraction limit. Then we modulated the power of illumination light to obtain a uniform interference contrast over the entire pupil. Consequently, we could achieve an axial resolution fairly close to the diffraction limit set by the experimental conditions.
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15
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Klontzas ME, Protonotarios A. High-Resolution Imaging for the Analysis and Reconstruction of 3D Microenvironments for Regenerative Medicine: An Application-Focused Review. Bioengineering (Basel) 2021; 8:182. [PMID: 34821748 PMCID: PMC8614770 DOI: 10.3390/bioengineering8110182] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 11/07/2021] [Accepted: 11/08/2021] [Indexed: 11/29/2022] Open
Abstract
The rapid evolution of regenerative medicine and its associated scientific fields, such as tissue engineering, has provided great promise for multiple applications where replacement and regeneration of damaged or lost tissue is required. In order to evaluate and optimise the tissue engineering techniques, visualisation of the material of interest is crucial. This includes monitoring of the cellular behaviour, extracellular matrix composition, scaffold structure, and other crucial elements of biomaterials. Non-invasive visualisation of artificial tissues is important at all stages of development and clinical translation. A variety of preclinical and clinical imaging methods-including confocal multiphoton microscopy, optical coherence tomography, magnetic resonance imaging (MRI), and computed tomography (CT)-have been used for the evaluation of artificial tissues. This review attempts to present the imaging methods available to assess the composition and quality of 3D microenvironments, as well as their integration with human tissues once implanted in the human body. The review provides tissue-specific application examples to demonstrate the applicability of such methods on cardiovascular, musculoskeletal, and neural tissue engineering.
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Affiliation(s)
- Michail E. Klontzas
- Department of Medical Imaging, University Hospital of Heraklion, 71110, Heraklion, Crete, Greece
- Computational Biomedicine Laboratory, Institute of Computer Science, Foundation for Research and Technology (FORTH), 70013 Heraklion, Crete, Greece
- Department of Radiology, School of Medicine, Voutes Campus, University of Crete, 71003 Heraklion, Crete, Greece
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16
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Chowdhury A, Singh Y, Das U, Waghmare D, Dasgupta R, Majumder SK. Effects of mobile phone emissions on human red blood cells. JOURNAL OF BIOPHOTONICS 2021; 14:e202100047. [PMID: 33871929 DOI: 10.1002/jbio.202100047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2021] [Revised: 04/16/2021] [Accepted: 04/16/2021] [Indexed: 06/12/2023]
Abstract
Raman spectroscopy was performed on GSM 900 and 1800 MHz mobile phone signal exposed red blood cells (RBCs). The observed changes in the Raman spectra of mobile signal exposed RBCs compared to unexposed control suggest reduced hemoglobin-oxygen affinity for the exposed cells. The possible mechanism may involve activation of the voltage gated membrane Ca2+ channels by the mobile phone emissions resulting in an increase in the levels of adenosine triphosphate (ATP) and 2,3-diphosphoglycerate (2,3-DPG) in cells via altered metabolic activities. Further studies carried out with fluorescent Ca2+ indicator confirmed increased intracellular Ca2+ level in the exposed cells. Since intracellular ATP level influences the shape and mechanics of RBCs, exposed cells were studied using diffraction phase microscopy and optical tweezers. Detectable changes in shape and mechanical properties were observed due to mobile signal exposure.
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Affiliation(s)
- Aniket Chowdhury
- Laser Biomedical Applications Division, Raja Ramanna Centre of Advanced Technology, Indore, Madhya Pradesh, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai, Maharashtra, India
| | - Yashveer Singh
- Homi Bhabha National Institute, Anushaktinagar, Mumbai, Maharashtra, India
| | - Uttam Das
- Laser Biomedical Applications Division, Raja Ramanna Centre of Advanced Technology, Indore, Madhya Pradesh, India
| | - Deepak Waghmare
- School of Physics, Devi Ahilya University, Indore, Madhya Pradesh, India
| | - Raktim Dasgupta
- Laser Biomedical Applications Division, Raja Ramanna Centre of Advanced Technology, Indore, Madhya Pradesh, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai, Maharashtra, India
| | - Shovan Kumar Majumder
- Laser Biomedical Applications Division, Raja Ramanna Centre of Advanced Technology, Indore, Madhya Pradesh, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai, Maharashtra, India
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17
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Kaza N, Ojaghi A, Robles FE. Hemoglobin quantification in red blood cells via dry mass mapping based on UV absorption. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210112LR. [PMID: 34378368 PMCID: PMC8353376 DOI: 10.1117/1.jbo.26.8.086501] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Accepted: 07/16/2021] [Indexed: 05/31/2023]
Abstract
SIGNIFICANCE The morphological properties and hemoglobin (Hb) content of red blood cells (RBCs) are essential biomarkers to diagnose or monitor various types of hematological disorders. Label-free mass mapping approaches enable accurate Hb quantification from individual cells, serving as promising alternatives to conventional hematology analyzers. Deep ultraviolet (UV) microscopy is one such technique that allows high-resolution, molecular imaging, and absorption-based mass mapping. AIM To compare UV absorption-based mass mapping at four UV wavelengths and understand variations across wavelengths and any assumptions necessary for accurate Hb quantification. APPROACH Whole blood smears are imaged with a multispectral UV microscopy system, and the RBCs' dry masses are computed. This approach is compared to quantitative phase imaging-based mass mapping using data from an interferometric UV imaging system. RESULTS Consistent Hb mass and mean corpuscular Hb values are obtained at all wavelengths, with the precision of the single-cell mass measurements being nearly identical at 220, 260, and 280 nm but slightly lower at 300 nm. CONCLUSIONS A full hematological analysis (including white blood cell identification and characterization, and Hb quantification) may be achieved using a single UV illumination wavelength, thereby improving the speed and cost-effectiveness.
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Affiliation(s)
- Nischita Kaza
- Georgia Institute of Technology, School of Electrical and Computer Engineering, Atlanta, Georgia, United States
| | - Ashkan Ojaghi
- Georgia Institute of Technology and Emory University, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
| | - Francisco E. Robles
- Georgia Institute of Technology and Emory University, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
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18
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Significant difference in response of malignant tumor cells of individual patients to photodynamic treatment as revealed by digital holographic microscopy. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2021; 221:112235. [PMID: 34126589 DOI: 10.1016/j.jphotobiol.2021.112235] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 04/21/2021] [Accepted: 05/28/2021] [Indexed: 01/17/2023]
Abstract
The investigation of in-vitro response of cell cultures derived from tumor material of individual patients with similar tumor localizations to photodynamic treatment is presented. Tumor types included in the research were renal cell carcinoma, melanoma and alveolar, synovial, lypo- and osteo- sarcomas. Long-term observations of treatment-induced morphological changes in cells were performed by means of digital holographic microscopy. A substantial variance in response of cells of individual patients with similar tumor types and localizations to photodynamic treatment with the same dose has been observed. These peculiarities are indicative of the demand to personalized protocols of photodynamic treatment. The elevated resistance of cells of some patients to treatment at high doses highlights potential limitations of photodynamic therapy for some patients. Digital holographic microscopy is shown to be an informative label-free noninvasive tool allowing for long-term monitoring of cell samples in vitro and providing quantitative information on necrosis rate and loss of cellular dry mass. The developed methodology can be generalized for analysis of cellular response to various therapies.
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19
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Kim D, Lee S, Lee M, Oh J, Yang SA, Park Y. Holotomography: Refractive Index as an Intrinsic Imaging Contrast for 3-D Label-Free Live Cell Imaging. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021; 1310:211-238. [PMID: 33834439 DOI: 10.1007/978-981-33-6064-8_10] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Live cell imaging provides essential information in the investigation of cell biology and related pathophysiology. Refractive index (RI) can serve as intrinsic optical imaging contrast for 3-D label-free and quantitative live cell imaging, and provide invaluable information to understand various dynamics of cells and tissues for the study of numerous fields. Recently significant advances have been made in imaging methods and analysis approaches utilizing RI, which are now being transferred to biological and medical research fields, providing novel approaches to investigate the pathophysiology of cells. To provide insight into how RI can be used as an imaging contrast for imaging of biological specimens, here we provide the basic principle of RI-based imaging techniques and summarize recent progress on applications, ranging from microbiology, hematology, infectious diseases, hematology, and histopathology.
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Affiliation(s)
- Doyeon Kim
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, South Korea
| | - Sangyun Lee
- Department of Physics, KAIST, Daejeon, South Korea
| | - Moosung Lee
- Department of Physics, KAIST, Daejeon, South Korea
| | - Juntaek Oh
- Department of Physics, KAIST, Daejeon, South Korea
| | - Su-A Yang
- Department of Biological Sciences, KAIST, Daejeon, South Korea
| | - YongKeun Park
- Department of Physics, KAIST, Daejeon, South Korea. .,KAIST Institute Health Science and Technology, Daejeon, South Korea. .,Tomocube Inc., Daejeon, South Korea.
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20
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Ünal A, Kocahan Ö, Altunan B, Aksoy Gündoğdu A, Uyanık M, Özder S. Quantitative phase imaging of erythrocyte in epilepsy patients. Microsc Res Tech 2020; 84:1172-1180. [PMID: 33340178 DOI: 10.1002/jemt.23676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 12/06/2020] [Indexed: 11/08/2022]
Abstract
The present study focuses on the quantitative phase imaging of erythrocytes with the aim to compare the morphological differences between epilepsy patients under antiepileptic treatment, who have no other disease which may affect the erythrocyte morphology, and the healthy control group. The white light diffraction phase microscopy (WDPM) has been used to obtain the interferogram of the erythrocyte surfaces. The continuous wavelet transform with Paul wavelet has been chosen to calculate the surface profiles from this interferogram image. For the determination of alteration in morphology, besides WDPM, erythrocyte surfaces have been investigated by light microscope and scanning electron microscope. In this way, it has been possible to see the difference in terms of precision and implementation between the most commonly used methods with regard to the quantitative phase imaging. Erythrocytes from all the samples have been examined and displayed in both two- and three-dimensional way. We have observed that erythrocytes of patients with effective antiepileptic blood levels were more affected in morphology than healthy subjects. When we compared the erythrocyte morphological changes of patients who received monotherapy or polytherapy, no difference was observed. In conclusion, antiepileptic drugs (AEDs) cause red blood cell (RBC) morphological changes and a combined usage of WDPM with Paul wavelet and light microscopy methods are very convenient for studying the erythrocyte morphologies on multiple patients.
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Affiliation(s)
- Aysun Ünal
- Department of Neurology, Tekirdağ Namık Kemal University, Tekirdağ, Turkey
| | - Özlem Kocahan
- Department of Physics, Tekirdağ Namık Kemal University, Tekirdağ, Turkey
| | - Bengü Altunan
- Department of Neurology, Tekirdağ Namık Kemal University, Tekirdağ, Turkey
| | | | - Merve Uyanık
- Department of Physics, Tekirdağ Namık Kemal University, Tekirdağ, Turkey
| | - Serhat Özder
- Department of Physics, Çanakkale Onsekiz Mart University, Çanakkale, Turkey
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21
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Sato M, Masuta J, Nishidate I. Differential phase imaging in full-field optical coherence microscopy using a short multimode fiber probe. APPLIED OPTICS 2020; 59:10512-10522. [PMID: 33361986 DOI: 10.1364/ao.405226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Accepted: 10/27/2020] [Indexed: 06/12/2023]
Abstract
We demonstrate phase imaging that reduces the common phase noise in full-field optical coherence microscopy using a short multimode fiber (SMMF) probe. Using a cover glass, phase images of the SMMF and sample surfaces were measured simultaneously. Subtracting the phase of the SMMF surface as a reference, the phase drifts in the sample region are reduced. The axial and lateral resolutions were 2.3 µm and <4.4µm, respectively. The standard deviation of the time variation in the phase decreased from 14.3 deg to 9.2 deg and was reduced by 64% when in contact with the polymer film at the SMMF. In quantitative evaluations, the measured phases closely correspond to the phases changed by a piezoelectric device.
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22
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Adeniba OO, Corbin EA, Ganguli A, Kim Y, Bashir R. Simultaneous time-varying viscosity, elasticity, and mass measurements of single adherent cancer cells across cell cycle. Sci Rep 2020; 10:12803. [PMID: 32733047 PMCID: PMC7393350 DOI: 10.1038/s41598-020-69638-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Accepted: 07/16/2020] [Indexed: 01/04/2023] Open
Abstract
Biophysical studies on single cells have linked cell mechanics to physiology, functionality and disease. Evaluation of mass and viscoelasticity versus cell cycle can provide further insights into cell cycle progression and the uncontrolled proliferation of cancer. Using our pedestal microelectromechanical systems resonant sensors, we have developed a non-contact interferometric measurement technique that simultaneously tracks the dynamic changes in the viscoelastic moduli and mass of adherent colon (HT-29) and breast cancer (MCF-7) cells from the interphase through mitosis and then to the cytokinesis stages of their growth cycle. We show that by combining three optomechanical parameters in an optical path length equation and a two-degree-of-freedom model, we can simultaneously extract the viscoelasticity and mass as a function of the nano-scaled membrane fluctuation of each adherent cell. Our measurements are able to discern between soft and stiff cells across the cell cycle and demonstrated sharp viscoelastic changes due to cortical stiffening around mitosis. Cell rounding before division can be detected by measurement of mechanical coupling between the cells and the sensors. Our measurement device and method can provide for new insights into the mechanics of single adherent cells versus time.
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Affiliation(s)
- Olaoluwa O Adeniba
- Department of Mechanical Science and Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Micro and Nanotechnology Laboratory, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Elise A Corbin
- Biomedical Engineering Department, University of Delaware, Newark, DE, 19716, USA
- Materials Science and Engineering Department, University of Delaware, Newark, DE, 19716, USA
- Nemours/Alfred I. duPont Hospital for Children, Wilmington, DE, 19803, USA
| | - Anurup Ganguli
- Micro and Nanotechnology Laboratory, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Yongdeok Kim
- Micro and Nanotechnology Laboratory, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
- Department of Materials Science and Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Rashid Bashir
- Department of Mechanical Science and Engineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Micro and Nanotechnology Laboratory, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Department of Bioengineering, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
- Carle Illinois College of Medicine, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
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23
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Karuna A, Masia F, Chappell S, Errington R, Hartley AM, Jones DD, Borri P, Langbein W. Quantitative Imaging of B1 Cyclin Expression Across the Cell Cycle Using Green Fluorescent Protein Tagging and Epifluorescence. Cytometry A 2020; 97:1066-1072. [PMID: 32613720 DOI: 10.1002/cyto.a.24038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 04/21/2020] [Accepted: 04/28/2020] [Indexed: 11/10/2022]
Abstract
In this article, we report the number of cyclin B1 proteins tagged with enhanced green fluorescent protein (eGFP) in fixed U-2 OS cells across the cell cycle. We use a quantitative analysis of epifluorescence to determine the number of eGFP molecules in a nondestructive way, and integrated over the cell we find 104 to 105 molecules. Based on the measured number of eGFP tagged cyclin B1 proteins, knowledge of cyclin B1 dynamics through the cell cycle, and the cell morphology, we identify the stages of cells in the cell cycle. © 2020 The Authors. Cytometry Part A published by Wiley Periodicals LLC. on behalf of International Society for Advancement of Cytometry.
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Affiliation(s)
- Arnica Karuna
- School of Physics and Astronomy, Cardiff University, Cardiff, UK
| | - Francesco Masia
- School of Physics and Astronomy, Cardiff University, Cardiff, UK.,School of Biosciences, Cardiff University, Cardiff, UK
| | | | | | | | | | - Paola Borri
- School of Biosciences, Cardiff University, Cardiff, UK
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24
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Nguyen TL, Polanco ER, Patananan AN, Zangle TA, Teitell MA. Cell viscoelasticity is linked to fluctuations in cell biomass distributions. Sci Rep 2020; 10:7403. [PMID: 32366921 PMCID: PMC7198624 DOI: 10.1038/s41598-020-64259-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Accepted: 04/14/2020] [Indexed: 12/20/2022] Open
Abstract
The viscoelastic properties of mammalian cells can vary with biological state, such as during the epithelial-to-mesenchymal (EMT) transition in cancer, and therefore may serve as a useful physical biomarker. To characterize stiffness, conventional techniques use cell contact or invasive probes and as a result are low throughput, labor intensive, and limited by probe placement. Here, we show that measurements of biomass fluctuations in cells using quantitative phase imaging (QPI) provides a probe-free, contact-free method for quantifying changes in cell viscoelasticity. In particular, QPI measurements reveal a characteristic underdamped response of changes in cell biomass distributions versus time. The effective stiffness and viscosity values extracted from these oscillations in cell biomass distributions correlate with effective cell stiffness and viscosity measured by atomic force microscopy (AFM). This result is consistent for multiple cell lines with varying degrees of cytoskeleton disruption and during the EMT. Overall, our study demonstrates that QPI can reproducibly quantify cell viscoelasticity.
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Affiliation(s)
- Thang L Nguyen
- Department of Bioengineering, University of California at Los Angeles, Los Angeles, CA, 90095, USA
| | - Edward R Polanco
- Department of Chemical Engineering, University of Utah, Salt Lake City, UT, 84112, USA
| | - Alexander N Patananan
- Deparment of Pathology and Laboratory Medicine, University of California at Los Angeles, Los Angeles, CA, 90095, USA
| | - Thomas A Zangle
- Department of Chemical Engineering, University of Utah, Salt Lake City, UT, 84112, USA.
- Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, 84112, USA.
| | - Michael A Teitell
- Department of Bioengineering, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- Deparment of Pathology and Laboratory Medicine, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- Molecular Biology Institute, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- Broad Center for Regenerative Medicine and Stem Cell Research, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- California NanoSystems Institute, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- Department of Pediatrics, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
- Jonsson Comprehensive Cancer Center, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, CA, 90095, USA.
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25
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Rastogi V, Agarwal S, Dubey SK, Khan GS, Shakher C. Design and development of volume phase holographic grating based digital holographic interferometer for label-free quantitative cell imaging. APPLIED OPTICS 2020; 59:3773-3783. [PMID: 32400505 DOI: 10.1364/ao.387620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 03/15/2020] [Indexed: 06/11/2023]
Abstract
In this paper, a volume phase holographic optical element based digital holographic interferometer is designed and used for quantitative phase imaging of biological cells [white blood cells, red blood cells, platelets, and Staphylococcus aureus (S. aureus) bacteria cells]. The experimental results reveal that sharp images of the S. aureus bacteria cells of the order of ${\sim}{1}\;{\unicode{x00B5}{\rm m}}$∼1µm can be clearly seen. The volume phase holographic grating will remove the stray light from the system reaching toward the grating and will minimize the coherent noise (speckle noise). This will improve the sharpness in the image reconstructed from the recorded digital hologram.
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26
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Real-time cholesterol sorting in Plasmodium falciparum-erythrocytes as revealed by 3D label-free imaging. Sci Rep 2020; 10:2794. [PMID: 32066816 PMCID: PMC7026401 DOI: 10.1038/s41598-020-59552-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2019] [Accepted: 01/28/2020] [Indexed: 12/18/2022] Open
Abstract
Cholesterol, a necessary component of animal cell membranes, is also needed by the lethal human malaria parasite Plasmodium falciparum. Because P. falciparum lacks a cholesterol synthesis pathway and malaria patients have low blood cholesterol, we speculated that it scavenges cholesterol from them in some way. We used time-lapse holotomographic microscopy to observe cholesterol transport in live P. falciparum parasites and structurally investigate erythrocyte membranes, both during and after P. falciparum invasion of human erythrocytes. After P. falciparum initially acquired free cholesterol or inner erythrocytic membrane-derived cholesterol, we observed budding lipid membranes elongating into the cytosol and/or membrane segments migrating there and eventually fusing with the parasite membranes, presumably at the parasitophorous vacuole membrane (PVM). Finally, the cholesterol-containing segments were seen to surround the parasite nucleus. Our imaging data suggest that a novel membrane transport system operates in the cytosol of P. falciparum-infected erythrocytes as a cholesterol import system, likely between the PVM and the erythrocyte membrane, and that this transportation process occurs during the live erythrocyte stages of P. falciparum.
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27
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Ye F, Yin S, Li M, Li Y, Zhong J. In-vivo full-field measurement of microcirculatory blood flow velocity based on intelligent object identification. JOURNAL OF BIOMEDICAL OPTICS 2020; 25:1-11. [PMID: 31970945 PMCID: PMC6975132 DOI: 10.1117/1.jbo.25.1.016003] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 12/30/2019] [Indexed: 05/09/2023]
Abstract
Microcirculation plays a crucial role in delivering oxygen and nutrients to living tissues and in removing metabolic wastes from the human body. Monitoring the velocity of blood flow in microcirculation is essential for assessing various diseases, such as diabetes, cancer, and critical illnesses. Because of the complex morphological pattern of the capillaries, both In-vivo capillary identification and blood flow velocity measurement by conventional optical capillaroscopy are challenging. Thus, we focused on developing an In-vivo optical microscope for capillary imaging, and we propose an In-vivo full-field flow velocity measurement method based on intelligent object identification. The proposed method realizes full-field blood flow velocity measurements in microcirculation by employing a deep neural network to automatically identify and distinguish capillaries from images. In addition, a spatiotemporal diagram analysis is used for flow velocity calculation. In-vivo experiments were conducted, and the images and videos of capillaries were collected for analysis. We demonstrated that the proposed method is highly accurate in performing full-field blood flow velocity measurements in microcirculation. Further, because this method is simple and inexpensive, it can be effectively employed in clinics.
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Affiliation(s)
- Fei Ye
- Jinan University, Department of Optoelectronic Engineering, Guangzhou, China
| | - Songchao Yin
- Sun Yat-sen University, Third Affiliated Hospital, Department of Dermatology, Guangzhou, China
| | - Meirong Li
- Sun Yat-sen University, Third Affiliated Hospital, Department of Dermatology, Guangzhou, China
| | - Yujie Li
- Sun Yat-sen University, Sixth Affiliated Hospital, Reproductive Medicine Center, Guangzhou, China
| | - Jingang Zhong
- Jinan University, Department of Optoelectronic Engineering, Guangzhou, China
- Address all correspondence to Jingang Zhong, E-mail:
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28
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Parshina EY, Yusipovich AI, Brazhe AR, Silicheva MA, Maksimov GV. Heat damage of cytoskeleton in erythrocytes increases membrane roughness and cell rigidity. J Biol Phys 2019; 45:367-377. [PMID: 31758351 PMCID: PMC6917684 DOI: 10.1007/s10867-019-09533-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 10/31/2019] [Indexed: 11/30/2022] Open
Abstract
The intensity of erythrocyte membrane fluctuations was studied by laser interference microscopy (LIM), which provide information about mechanical properties of the erythrocyte membrane. Atomic force microscopy (AFM) was used to study erythrocyte surface relief; it is related to the cytoskeleton structure of erythrocyte membrane. Intact human erythrocytes and erythrocytes with a destroyed cytoskeleton were used. According to the obtained results, cytoskeleton damage induced by heating up to 50 °С results in a reduced intensity of cell membrane fluctuations compared to non-treated cells (20.6 ± 10.2 vs. 30.5 ± 5.5 nm, correspondingly), while the roughness of the membrane increases (4.5 ± 1.5 vs. 3.4 ± 0.5 nm, correspondingly).
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Affiliation(s)
- E Yu Parshina
- Biological Department, M.V. Lomonosov Moscow State University, Leninskie gory, 1-12, 119234, Moscow, Russia.
| | - A I Yusipovich
- Biological Department, M.V. Lomonosov Moscow State University, Leninskie gory, 1-12, 119234, Moscow, Russia
| | - A R Brazhe
- Biological Department, M.V. Lomonosov Moscow State University, Leninskie gory, 1-12, 119234, Moscow, Russia
| | - M A Silicheva
- Biological Department, M.V. Lomonosov Moscow State University, Leninskie gory, 1-12, 119234, Moscow, Russia
| | - G V Maksimov
- Biological Department, M.V. Lomonosov Moscow State University, Leninskie gory, 1-12, 119234, Moscow, Russia
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Three-Dimensional Shapes and Cell Deformability of Rat Red Blood Cells during and after Asphyxial Cardiac Arrest. Emerg Med Int 2019; 2019:6027236. [PMID: 31737367 PMCID: PMC6815595 DOI: 10.1155/2019/6027236] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Revised: 09/03/2019] [Accepted: 09/17/2019] [Indexed: 12/14/2022] Open
Abstract
Changes in microcirculation are believed to perform an important role after cardiac arrest. In particular, rheological changes in red blood cells (RBCs) have been observed during and after ischemic-reperfusion injury. Employing three-dimensional laser interferometric microscopy, we investigated three-dimensional shapes and deformability of RBCs during and after asphyxial cardiac arrest in rats at the individual cell level. Rat cardiac arrest was induced by asphyxia. Five rats were maintained for 7 min of no-flow time, and then, cardiopulmonary resuscitation (CPR) was started. Blood samples were obtained before cardiac arrest, during CPR, and 60 min after return of spontaneous circulation (ROSC). Quantitative phase imaging (QPI) techniques based on laser interferometry were used to measure the three-dimensional refractive index (RI) tomograms of the RBC, from which structural and biochemical properties were retrieved. Dynamic membrane fluctuations in the cell membrane were also quantitatively and sensitively measured in order to investigate cell deformability. Mean corpuscular hemoglobin, mean cell volume, mean corpuscular hemoglobin concentration, and red blood cell distribution width remained unchanged during CPR and after ROSC compared with those before cardiac arrest. QPI results revealed that RBC membrane fluctuations, sphericity, and surface area did not change significantly during CPR or after ROSC compared with initial values. In conclusion, no three-dimensional shapes and cell deformability changes in RBCs were detected.
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Midtvedt D, Olsén E, Höök F, Jeffries GDM. Label-free spatio-temporal monitoring of cytosolic mass, osmolarity, and volume in living cells. Nat Commun 2019; 10:340. [PMID: 30664642 PMCID: PMC6341078 DOI: 10.1038/s41467-018-08207-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Accepted: 12/13/2018] [Indexed: 02/08/2023] Open
Abstract
Microorganisms adapt their biophysical properties in response to changes in their local environment. However, quantifying these changes at the single-cell level has only recently become possible, largely relying on fluorescent labeling strategies. In this work, we utilize yeast (Saccharomyces cerevisiae) to demonstrate label-free quantification of changes in both intracellular osmolarity and macromolecular concentration in response to changes in the local environment. By combining a digital holographic microscope with a millifluidic chip, the temporal response of cellular water flux was successfully isolated from the rate of production of higher molecular weight compounds, in addition to identifying the produced compounds in terms of the product of their refractive index increment [Formula: see text] and molar mass. The ability to identify, quantify and temporally resolve multiple biophysical processes in living cells at the single cell level offers a crucial complement to label-based strategies, suggesting broad applicability in studies of a wide-range of cellular processes.
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Affiliation(s)
- Daniel Midtvedt
- Department of Physics, Chalmers University of Technology, Gothenburg, Sweden.
| | - Erik Olsén
- Department of Physics, Chalmers University of Technology, Gothenburg, Sweden
| | - Fredrik Höök
- Department of Physics, Chalmers University of Technology, Gothenburg, Sweden
| | - Gavin D M Jeffries
- Department of Chemistry, Chalmers University of Technology, Gothenburg, Sweden
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31
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Lee JS, Eom K, Polucha C, Lee J. Standard-unit measurement of cellular viability using dynamic light scattering optical coherence microscopy. BIOMEDICAL OPTICS EXPRESS 2018; 9:5227-5239. [PMID: 30460124 PMCID: PMC6238897 DOI: 10.1364/boe.9.005227] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2018] [Revised: 09/04/2018] [Accepted: 09/19/2018] [Indexed: 05/24/2023]
Abstract
Dynamic light scattering optical coherence microscopy (DLS-OCM) integrates DLS, which measures diffusion or flow of particles by analyzing fluctuations in light scattered by the particles, and OCM, which achieves single-cell resolution by combining coherence and confocal gating, integratively enabling cellular-resolution 3D mapping of the diffusion coefficient, and flow velocity. The diffusion coefficient mapping has a potential for the non-destructive measurement of cellular viability in the standard unit but has not been validated yet. Here, we present DLS-OCM imaging of intra-cellular motility (ICM) as a surrogate of cellular viability. For this purpose, we have simultaneously obtained and compared ICM-contrast DLS-OCM images and calcium fluorescence-contrast images of retinal ganglion cells, and then characterized the responses of the measured ICM to a change in cellular viability induced by environmental conditions such as temperature and pH. The diffusion-coefficient-represented ICM exhibits consistent changes with the manipulated cellular viability.
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Affiliation(s)
- Julia S. Lee
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, RI, USA
| | - Kyungsik Eom
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, RI, USA
| | - Collin Polucha
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, RI, USA
| | - Jonghwan Lee
- Center for Biomedical Engineering, School of Engineering, Brown University, Providence, RI, USA
- Carney Institute for Brain Science, Brown University, Providence, RI, USA
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32
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CHOI YOUNGWOON, HOSSEINI POORYA, KANG JEONWOONG, KANG SUNGSAM, YANG TAESEOKDANIEL, HYEON MINGYU, KIM BEOPMIN, SO PETERTC, YAQOOB ZAHID. Reflection phase microscopy using spatio-temporal coherence of light. OPTICA 2018; 5:1468-1473. [PMID: 31008154 PMCID: PMC6472928 DOI: 10.1364/optica.5.001468] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Many disease states are associated with cellular biomechanical changes as markers. Label-free phase microscopes are used to quantify thermally driven interface fluctuations, which allow the deduction of important cellular rheological properties. Here, the spatio-temporal coherence of light was used to implement a high-speed reflection phase microscope with superior depth selectivity and higher phase sensitivity. Nanometric scale motion of cytoplasmic structures can be visualized with fine details and three-dimensional resolution. Specifically, the spontaneous fluctuation occurring on the nuclear membrane of a living cell was observed at video rate. By converting the reflection phase into displacement, the sensitivity in quantifying nuclear membrane fluctuation was found to be about one nanometer. A reflection phase microscope can potentially elucidate biomechanical mechanisms of pathological and physiological processes.
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Affiliation(s)
- YOUNGWOON CHOI
- School of Biomedical Engineering, Korea University, Seoul 02841, South Korea
- Department of Bio-convergence Engineering, Korea University, Seoul 02841, South Korea
- Corresponding author:
| | - POORYA HOSSEINI
- Laser Biomedical Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - JEON WOONG KANG
- Laser Biomedical Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - SUNGSAM KANG
- Laser Biomedical Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - TAESEOK DANIEL YANG
- School of Biomedical Engineering, Korea University, Seoul 02841, South Korea
| | - MIN GYU HYEON
- Department of Biomicro System Technology, Korea University, Seoul 02841, South Korea
| | - BEOP-MIN KIM
- School of Biomedical Engineering, Korea University, Seoul 02841, South Korea
- Department of Bio-convergence Engineering, Korea University, Seoul 02841, South Korea
- Department of Biomicro System Technology, Korea University, Seoul 02841, South Korea
| | - PETER T. C. SO
- Laser Biomedical Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
- Mechanical and Biological Engineering Departments, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - ZAHID YAQOOB
- Laser Biomedical Research Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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Kim G, Lee M, Youn S, Lee E, Kwon D, Shin J, Lee S, Lee YS, Park Y. Measurements of three-dimensional refractive index tomography and membrane deformability of live erythrocytes from Pelophylax nigromaculatus. Sci Rep 2018; 8:9192. [PMID: 29907826 PMCID: PMC6003953 DOI: 10.1038/s41598-018-25886-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2017] [Accepted: 04/17/2018] [Indexed: 11/09/2022] Open
Abstract
Unlike mammalian erythrocytes, amphibian erythrocytes have distinct morphological features including large cell sizes and the presence of nuclei. The sizes of the cytoplasm and nuclei of erythrocytes vary significantly over different species, their environments, or pathophysiology, which makes hematological studies important for investigating amphibian species. Here, we present a label-free three-dimensional optical quantification of individual amphibian erythrocytes from frogs Pelophylax nigromaculatus (Rana nigromaculata). Using optical diffraction tomography, we measured three-dimensional refractive index (RI) tomograms of the cells, which clearly distinguished the cytoplasm and nuclei of the erythrocytes. From the measured RI tomograms, we extracted the relevant biochemical parameters of the cells, including hemoglobin contents and hemoglobin concentrations. Furthermore, we measured dynamic membrane fluctuations and investigated the mechanical properties of the cell membrane. From the statistical and correlative analysis of these retrieved parameters, we investigated interspecific differences between frogs and previously studied mammals.
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Affiliation(s)
- Geon Kim
- Department of Physics, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea
- KI for Health Science and Technology, KAIST, Daejeon, 34141, Republic of Korea
| | - Moosung Lee
- Department of Physics, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea
- KI for Health Science and Technology, KAIST, Daejeon, 34141, Republic of Korea
| | - SeongYeon Youn
- Daejeon Science High School for the Gifted, Daejeon, 34142, Republic of Korea
| | - EuiTae Lee
- Daejeon Science High School for the Gifted, Daejeon, 34142, Republic of Korea
| | - Daeheon Kwon
- Daejeon Science High School for the Gifted, Daejeon, 34142, Republic of Korea
| | - Jonghun Shin
- Daejeon Science High School for the Gifted, Daejeon, 34142, Republic of Korea
| | - SangYun Lee
- Department of Physics, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea
- KI for Health Science and Technology, KAIST, Daejeon, 34141, Republic of Korea
| | - Youn Sil Lee
- Daejeon Science High School for the Gifted, Daejeon, 34142, Republic of Korea
| | - YongKeun Park
- Department of Physics, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea.
- KI for Health Science and Technology, KAIST, Daejeon, 34141, Republic of Korea.
- Tomocube, Inc., Daejeon, 34051, Republic of Korea.
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34
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Singla N, Srivastava V, Mehta DS. Development of full-field optical spatial coherence tomography system for automated identification of malaria using the multilevel ensemble classifier. JOURNAL OF BIOPHOTONICS 2018; 11:e201700279. [PMID: 29297620 DOI: 10.1002/jbio.201700279] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 12/30/2017] [Accepted: 01/01/2018] [Indexed: 06/07/2023]
Abstract
Malaria is a life-threatening infectious blood disease affecting humans and other animals caused by parasitic protozoans belonging to the Plasmodium type especially in developing countries. The gold standard method for the detection of malaria is through the microscopic method of chemically treated blood smears. We developed an automated optical spatial coherence tomographic system using a machine learning approach for a fast identification of malaria cells. In this study, 28 samples (15 healthy, 13 malaria infected stages of red blood cells) were imaged by the developed system and 13 features were extracted. We designed a multilevel ensemble-based classifier for the quantitative prediction of different stages of the malaria cells. The proposed classifier was used by repeating k-fold cross validation dataset and achieve a high-average accuracy of 97.9% for identifying malaria infected late trophozoite stage of cells. Overall, our proposed system and multilevel ensemble model has a substantial quantifiable potential to detect the different stages of malaria infection without staining or expert.
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Affiliation(s)
- Neeru Singla
- Department of Electrical and Instrumentation Engineering, Thapar Institute of Engineering and Technology, Patiala, Punjab, India
| | - Vishal Srivastava
- Department of Electrical and Instrumentation Engineering, Thapar Institute of Engineering and Technology, Patiala, Punjab, India
| | - Dalip Singh Mehta
- Department of Physics, Indian Institute of Technology Delhi, New Delhi, India
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35
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Loewke NO, Pai S, Cordeiro C, Black D, King BL, Contag CH, Chen B, Baer TM, Solgaard O. Automated Cell Segmentation for Quantitative Phase Microscopy. IEEE TRANSACTIONS ON MEDICAL IMAGING 2018; 37:929-940. [PMID: 29610072 PMCID: PMC5907807 DOI: 10.1109/tmi.2017.2775604] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Automated cell segmentation and tracking is essential for dynamic studies of cellular morphology, movement, and interactions as well as other cellular behaviors. However, accurate, automated, and easy-to-use cell segmentation remains a challenge, especially in cases of high cell densities, where discrete boundaries are not easily discernable. Here, we present a fully automated segmentation algorithm that iteratively segments cells based on the observed distribution of optical cell volumes measured by quantitative phase microscopy. By fitting these distributions to known probability density functions, we are able to converge on volumetric thresholds that enable valid segmentation cuts. Since each threshold is determined from the observed data itself, virtually no input is needed from the user. We demonstrate the effectiveness of this approach over time using six cell types that display a range of morphologies, and evaluate these cultures over a range of confluencies. Facile dynamic measures of cell mobility and function revealed unique cellular behaviors that relate to tissue origins, state of differentiation, and real-time signaling. These will improve our understanding of multicellular communication and organization.
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36
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Tinning PW, Scrimgeour R, McConnell G. Widefield standing wave microscopy of red blood cell membrane morphology with high temporal resolution. BIOMEDICAL OPTICS EXPRESS 2018; 9:1745-1761. [PMID: 29675316 PMCID: PMC5905920 DOI: 10.1364/boe.9.001745] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2017] [Revised: 03/09/2018] [Accepted: 03/09/2018] [Indexed: 05/10/2023]
Abstract
We report the first demonstration of widefield standing wave (SW) microscopy of fluorescently labelled red blood cells at high speeds that allow for the rapid imaging of membrane deformations. Using existing and custom MATLAB functions, we also present a method to generate 2D and 3D reconstructions of the SW data for improved visualization of the cell. We compare our technique with standard widefield epifluorescence imaging and show that the SW technique not only reveals more topographical information about the specimen but does so without increasing toxicity or the rate of photobleaching and could make this a powerful technique for the diagnosis or study of red blood cell morphology and biomechanical characteristics.
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Affiliation(s)
- Peter W Tinning
- Department of Physics, SUPA, University of Strathclyde, Glasgow, G4 ONG, UK
| | - Ross Scrimgeour
- Department of Physics, SUPA, University of Strathclyde, Glasgow, G4 ONG, UK
| | - Gail McConnell
- Department of Physics, SUPA, University of Strathclyde, Glasgow, G4 ONG, UK
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37
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Ban S, Min E, Baek S, Kwon HM, Popescu G, Jung W. Optical properties of acute kidney injury measured by quantitative phase imaging. BIOMEDICAL OPTICS EXPRESS 2018; 9:921-932. [PMID: 29541494 PMCID: PMC5846539 DOI: 10.1364/boe.9.000921] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 01/25/2018] [Indexed: 05/20/2023]
Abstract
The diagnosis of acute kidney disease (AKI) has been examined mainly by histology, immunohistochemistry and western blot. Though these approaches are widely accepted in the field, it has an inherent limitation due to the lack of high-throughput and quantitative information. For a better understanding of prognosis in AKI, we present a new approach using quantitative phase imaging combined with a wide-field scanning platform. Through the phase-delay information from the tissue, we were able to predict a stage of AKI based on various optical properties such as light scattering coefficient and anisotropy. These optical parameters quantify the deterioration process of the AKI model of tissue. Our device would be a very useful tool when it is required to deliver fast feedback of tissue pathology or when diseases are related to mechanical properties such as fibrosis.
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Affiliation(s)
- Sungbea Ban
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
- These authors contributed equally to this work
| | - Eunjung Min
- Rowland Institute, Harvard University, Boston, Massachusetts, USA
- These authors contributed equally to this work
| | - Songyee Baek
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
| | - Hyug Moo Kwon
- Department of Biological Science, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
| | - Gabriel Popescu
- Quantitative Light Imaging Laboratory, Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - Woonggyu Jung
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
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38
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Gillies D, Gamal W, Downes A, Reinwald Y, Yang Y, El Haj AJ, Bagnaninchi PO. Real-time and non-invasive measurements of cell mechanical behaviour with optical coherence phase microscopy. Methods 2018; 136:126-133. [PMID: 29080739 DOI: 10.1016/j.ymeth.2017.10.010] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 10/12/2017] [Accepted: 10/17/2017] [Indexed: 12/22/2022] Open
Abstract
Cell mechanical behaviour is increasingly recognised as a central biophysical parameter in cancer and stem cell research, and methods of investigating their mechanical behaviour are therefore needed. We have developed a novel qualitative method based on quantitative phase imaging which is capable of investigating cell mechanical behaviour in real-time at cellular resolution using optical coherence phase microscopy (OCPM), and stimulating the cells non-invasively using hydrostatic pressure. The method was exemplified to distinguish between cells with distinct mechanical properties, and transient change induced by Cytochalasin D. We showed the potential of quantitative phase imaging to detect nanoscale intracellular displacement induced by varying hydrostatic pressure in microfluidic channels, reflecting cell mechanical behaviour. Further physical modelling is required to yield quantitative mechanical properties.
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Affiliation(s)
- D Gillies
- MRC Centre for Regenerative Medicine, The University of Edinburgh, Edinburgh, EH16 4UU, UK; Institute for Bioengineering, School of Engineering, The University of Edinburgh, Edinburgh, EH9 3DW, UK
| | - W Gamal
- MRC Centre for Regenerative Medicine, The University of Edinburgh, Edinburgh, EH16 4UU, UK
| | - A Downes
- Institute for Bioengineering, School of Engineering, The University of Edinburgh, Edinburgh, EH9 3DW, UK
| | - Y Reinwald
- Institute for Science and Technology in Medicine, Keele University, Keele, ST4 7QB, UK
| | - Y Yang
- Institute for Science and Technology in Medicine, Keele University, Keele, ST4 7QB, UK
| | - A J El Haj
- Institute for Science and Technology in Medicine, Keele University, Keele, ST4 7QB, UK
| | - P O Bagnaninchi
- MRC Centre for Regenerative Medicine, The University of Edinburgh, Edinburgh, EH16 4UU, UK.
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39
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Model MA, Petruccelli JC. Intracellular Macromolecules in Cell Volume Control and Methods of Their Quantification. CURRENT TOPICS IN MEMBRANES 2018; 81:237-289. [DOI: 10.1016/bs.ctm.2018.06.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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40
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Chowdhury S, Eldridge WJ, Wax A, Izatt JA. Structured illumination microscopy for dual-modality 3D sub-diffraction resolution fluorescence and refractive-index reconstruction. BIOMEDICAL OPTICS EXPRESS 2017; 8:5776-5793. [PMID: 29296504 PMCID: PMC5745119 DOI: 10.1364/boe.8.005776] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 11/12/2017] [Accepted: 11/13/2017] [Indexed: 05/20/2023]
Abstract
Though structured illumination (SI) microscopy is a popular imaging technique conventionally associated with fluorescent super-resolution, recent works have suggested its applicability towards sub-diffraction resolution coherent imaging with quantitative endogenous biological contrast. Here, we demonstrate that SI can efficiently integrate together the principles of fluorescent super-resolution and coherent synthetic aperture to achieve 3D dual-modality sub-diffraction resolution, fluorescence and refractive-index (RI) visualizations of biological samples. We experimentally demonstrate this framework by introducing a SI microscope capable of 3D sub-diffraction resolution fluorescence and RI imaging, and verify its biological visualization capabilities by experimentally reconstructing 3D RI/fluorescence visualizations of fluorescent calibration microspheres as well as alveolar basal epithelial adenocarcinoma (A549) and human colorectal adenocarcinmoa (HT-29) cells, fluorescently stained for F-actin. This demonstration may suggest SI as an especially promising imaging technique to enable future biological studies that explore synergistically operating biophysical/biochemical and molecular mechanisms at sub-diffraction resolutions.
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Affiliation(s)
- Shwetadwip Chowdhury
- Department of Biomedical Engineering, Fitzpatrick Institute for Photonics, 1427 FCIEMAS, 101 Science Drive Box 90281, Durham, North Carolina 27708, USA
| | - Will J. Eldridge
- Department of Biomedical Engineering, Fitzpatrick Institute for Photonics, 1427 FCIEMAS, 101 Science Drive Box 90281, Durham, North Carolina 27708, USA
| | - Adam Wax
- Department of Biomedical Engineering, Fitzpatrick Institute for Photonics, 1427 FCIEMAS, 101 Science Drive Box 90281, Durham, North Carolina 27708, USA
| | - Joseph A. Izatt
- Department of Biomedical Engineering, Fitzpatrick Institute for Photonics, 1427 FCIEMAS, 101 Science Drive Box 90281, Durham, North Carolina 27708, USA
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41
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Lin YH, Huang SS, Wu SJ, Sung KB. Morphometric analysis of erythrocytes from patients with thalassemia using tomographic diffractive microscopy. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:1-11. [PMID: 29188659 DOI: 10.1117/1.jbo.22.11.116009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2017] [Accepted: 11/13/2017] [Indexed: 05/23/2023]
Abstract
Complete blood count is the most common test to detect anemia, but it is unable to obtain the abnormal shape of erythrocytes, which highly correlates with the hematologic function. Tomographic diffractive microscopy (TDM) is an emerging technique capable of quantifying three-dimensional (3-D) refractive index (RI) distributions of erythrocytes without labeling. TDM was used to characterize optical and morphological properties of 172 erythrocytes from healthy volunteers and 419 erythrocytes from thalassemic patients. To efficiently extract and analyze the properties of erythrocytes, we developed an adaptive region-growing method for automatically delineating erythrocytes from 3-D RI maps. The thalassemic erythrocytes not only contained lower hemoglobin content but also showed doughnut shape and significantly lower volume, surface area, effective radius, and average thickness. A multi-indices prediction model achieved perfect accuracy of diagnosing thalassemia using four features, including the optical volume, surface-area-to-volume ratio, sphericity index, and surface area. The results demonstrate the ability of TDM to provide quantitative, hematologic measurements and to assess morphological features of erythrocytes to distinguish healthy and thalassemic erythrocytes.
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Affiliation(s)
- Yang-Hsien Lin
- National Taiwan University, Graduate Institute of Biomedical Electronics and Bioinformatics, Taiwan
| | - Shin-Shyang Huang
- National Taiwan University, Graduate Institute of Biomedical Electronics and Bioinformatics, Taiwan
| | - Shang-Ju Wu
- National Taiwan University Hospital, Department of Internal Medicines, Taiwan
| | - Kung-Bin Sung
- National Taiwan University, Graduate Institute of Biomedical Electronics and Bioinformatics, Taiwan
- National Taiwan University, Department of Electrical Engineering, Taiwan
- National Taiwan University, Molecular Imaging Center, Taiwan
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42
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Poola PK, John R. Label-free nanoscale characterization of red blood cell structure and dynamics using single-shot transport of intensity equation. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:1-7. [PMID: 28984088 DOI: 10.1117/1.jbo.22.10.106001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Accepted: 08/23/2017] [Indexed: 06/07/2023]
Abstract
We report the results of characterization of red blood cell (RBC) structure and its dynamics with nanometric sensitivity using transport of intensity equation microscopy (TIEM). Conventional transport of intensity technique requires three intensity images and hence is not suitable for studying real-time dynamics of live biological samples. However, assuming the sample to be homogeneous, phase retrieval using transport of intensity equation has been demonstrated with single defocused measurement with x-rays. We adopt this technique for quantitative phase light microscopy of homogenous cells like RBCs. The main merits of this technique are its simplicity, cost-effectiveness, and ease of implementation on a conventional microscope. The phase information can be easily merged with regular bright-field and fluorescence images to provide multidimensional (three-dimensional spatial and temporal) information without any extra complexity in the setup. The phase measurement from the TIEM has been characterized using polymeric microbeads and the noise stability of the system has been analyzed. We explore the structure and real-time dynamics of RBCs and the subdomain membrane fluctuations using this technique.
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Affiliation(s)
- Praveen Kumar Poola
- Indian Institute of Technology Hyderabad, Department of Biomedical Engineering, Kandi, Telangana, India
| | - Renu John
- Indian Institute of Technology Hyderabad, Department of Biomedical Engineering, Kandi, Telangana, India
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43
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Yang SA, Yoon J, Kim K, Park Y. Measurements of morphological and biophysical alterations in individual neuron cells associated with early neurotoxic effects in Parkinson's disease. Cytometry A 2017. [PMID: 28426150 DOI: 10.1101/080937] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Parkinson's disease (PD) is a common neurodegenerative disease. However, therapeutic methods of PD are still limited due to complex pathophysiology in PD. Here, optical measurements of individual neurons from in vitro PD model using optical diffraction tomography (ODT) are presented. By measuring 3D refractive index distribution of neurons, morphological and biophysical alterations in in-vitro PD model are quantitatively investigated. It was found that neurons show apoptotic features in early PD progression. The present approach will open up new opportunities for quantitative investigation of the pathophysiology of various neurodegenerative diseases. © 2017 International Society for Advancement of Cytometry.
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Affiliation(s)
- Su-A Yang
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea
- KAIST Institute Health Science and Technology, Daejeon, 34141, South Korea
| | - Jonghee Yoon
- KAIST Institute Health Science and Technology, Daejeon, 34141, South Korea
- Department of Physics, KAIST, Daejeon, 34141, South Korea
| | - Kyoohyun Kim
- KAIST Institute Health Science and Technology, Daejeon, 34141, South Korea
- Department of Physics, KAIST, Daejeon, 34141, South Korea
| | - YongKeun Park
- KAIST Institute Health Science and Technology, Daejeon, 34141, South Korea
- Department of Physics, KAIST, Daejeon, 34141, South Korea
- Tomocube, Inc, Daejeon, 34051, South Korea
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Janicke B, Kårsnäs A, Egelberg P, Alm K. Label-free high temporal resolution assessment of cell proliferation using digital holographic microscopy. Cytometry A 2017; 91:460-469. [PMID: 28437571 DOI: 10.1002/cyto.a.23108] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2016] [Revised: 03/08/2017] [Accepted: 03/15/2017] [Indexed: 01/10/2023]
Abstract
Cell proliferation assays are widely applied in biological sciences to understand the effect of drugs over time. However, current methods often assess cell population growth indirectly, that is, the cells are not actually counted. Instead other parameters, for example, the amount of protein, are determined. These methods often also demand phototoxic labels, have low temporal resolution, or employ end-point assays, and frequently are labor intensive. We have developed a robust and label-free kinetic cell proliferation assay with high temporal resolution for adherent cells using digital holographic microscopy (DHM), one of many quantitative phase microscopy techniques. As no labels or stains are required, and only very low intensity illumination is necessary, the technique allows for noninvasive continuous cell counting. Only two image processing settings were adjusted between cell lines, making the assay practical, user friendly, and free of user bias. The developed direct assay was validated by analyzing cell cultures treated with various concentrations of the anti-cancer drug etoposide, a well-established topoisomerase inhibitor that causes DNA damage and leads to programmed cell death. After treatment, the unstained adherent cells were nondestructively imaged every 30 min for 36 h inside a cell incubator. In the recorded time-lapse image sequences, individual cells were automatically identified to provide detailed growth curves and growth rate data of cell number, confluence, and average cell volume. Our results demonstrate how these parameters facilitate a deeper understanding of cell processes than what is achievable with current single-parameter and end-point methods. © 2017 International Society for Advancement of Cytometry.
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Affiliation(s)
| | | | | | - Kersti Alm
- Phase Holographic Imaging AB, Lund, Sweden
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Yang SA, Yoon J, Kim K, Park Y. Measurements of morphological and biophysical alterations in individual neuron cells associated with early neurotoxic effects in Parkinson's disease. Cytometry A 2017; 91:510-518. [DOI: 10.1002/cyto.a.23110] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Revised: 03/22/2017] [Accepted: 03/24/2017] [Indexed: 12/26/2022]
Affiliation(s)
- Su-A Yang
- Department of Biological Sciences; Korea Advanced Institute of Science and Technology (KAIST); Daejeon 34141 South Korea
- KAIST Institute Health Science and Technology; Daejeon 34141 South Korea
| | - Jonghee Yoon
- KAIST Institute Health Science and Technology; Daejeon 34141 South Korea
- Department of Physics; KAIST; Daejeon 34141 South Korea
| | - Kyoohyun Kim
- KAIST Institute Health Science and Technology; Daejeon 34141 South Korea
- Department of Physics; KAIST; Daejeon 34141 South Korea
| | - YongKeun Park
- KAIST Institute Health Science and Technology; Daejeon 34141 South Korea
- Department of Physics; KAIST; Daejeon 34141 South Korea
- Tomocube, Inc; Daejeon 34051 South Korea
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Xiong J, Zhong L, Liu S, Qiu X, Zhou Y, Tian J, Lu X. Improved phase retrieval method of dual-wavelength interferometry based on a shorter synthetic-wavelength. OPTICS EXPRESS 2017; 25:7181-7191. [PMID: 28380843 DOI: 10.1364/oe.25.007181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In dual-wavelength interferometry (DWI), by combing the advantage of the shorter synthetic-wavelength and the immune algorithm of phase ambiguity, we propose an improved phase retrieval method with both high accuracy and large measurement range, which is a pair of contradiction in the reported DWI method. First, we calculate the height of measured object at longer synthetic-wavelength through using the wrapped phases of two single-wavelengths. Second, by combining the immune algorithm of phase ambiguity and the height of measured object at longer synthetic-wavelength, we can perform the phase unwrapping of the larger one of the two single-wavelengths, then achieve accurate height at single-wavelength named as the transition height. Finally, we perform phase unwrapping of shorter synthetic-wavelength through using the immune algorithm of phase ambiguity and the transition height, and then the height at shorter synthetic-wavelength can be achieved. Compared with the reported method, in addition to maintaining the advantage of high accuracy, the proposed method does not need the additional wavelength, so the corresponding measurement procedures is greatly simplified. Simulation and experimental results demonstrate the performance of proposed method.
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47
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Full-Field Optical Coherence Tomography as a Diagnosis Tool: Recent Progress with Multimodal Imaging. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7030236] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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48
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Min E, Ban S, Wang Y, Bae SC, Popescu G, Best-Popescu C, Jung W. Measurement of multispectral scattering properties in mouse brain tissue. BIOMEDICAL OPTICS EXPRESS 2017; 8:1763-1770. [PMID: 28663864 PMCID: PMC5480579 DOI: 10.1364/boe.8.001763] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2016] [Revised: 02/10/2017] [Accepted: 02/14/2017] [Indexed: 05/26/2023]
Abstract
We present the scattering properties of mouse brain using multispectral diffraction phase microscopy. Typical diffraction phase microscopy was incorporated with the broadband light source which offers the measurement of the scattering coefficient and anisotropy in the spectral range of 550-900 nm. The regional analysis was performed for both the myeloarchitecture and cytoarchitecture of the brain tissue. Our results clearly evaluate the multispectral scattering properties in the olfactory bulb and corpus callosum. The scattering coefficient measured in the corpus callosum is about four times higher than in the olfactory bulb. It also indicates that it is feasible to realize the quantitative phase microscope in near infrared region for thick brain tissue imaging.
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Affiliation(s)
- Eunjung Min
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
- Quantitative Light Imaging Laboratory, Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
- These authors contributed equally to this work
| | - Sungbea Ban
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
- These authors contributed equally to this work
| | - Yanyan Wang
- Department of Pharmacology and Beckman Institute, University of Illinois at Urbana-Champaign (UIUC), Urbana, IL 61801, USA
| | - Sung Chul Bae
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
| | - Gabriel Popescu
- Quantitative Light Imaging Laboratory, Department of Electrical and Computer Engineering, Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Catherine Best-Popescu
- Cellular Neuroscience and Imaging Laboratory, Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Woonggyu Jung
- Department of Biomedical Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan, South Korea
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan, South Korea
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Memmolo P, Merola F, Miccio L, Mugnano M, Ferraro P. Investigation on dynamics of red blood cells through their behavior as biophotonic lenses. JOURNAL OF BIOMEDICAL OPTICS 2016; 21:121509. [PMID: 27735017 DOI: 10.1117/1.jbo.21.12.121509] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 09/19/2016] [Indexed: 05/24/2023]
Abstract
The possibility to adopt biological matter as photonic optical elements can open scenarios in biophotonics research. Recently, it has been demonstrated that a red blood cell (RBC) can be seen as an optofluidic microlens by showing its imaging capability as well as its focal tunability. Moreover, correlation between an RBC’s morphology and its behavior as a refractive optical element has been established and its exploitation for biomedical diagnostic purposes has been foreseen. In fact, any deviation from the healthy RBC morphology can be seen as additional aberration in the optical wavefront passing through the cell. By this concept, accurate localization of focal spots of RBCs can become very useful in the blood disorders identification. We investigate the three-dimensional positioning of such focal spots over time for samples with two different osmolarity conditions, i.e., when they assume discocyte and spherical shapes, respectively. We also demonstrate that a temporal variation of an RBC’s focal points along the optical axis is correlated to the temporal fluctuations in the RBC’s thickness maps. Furthermore, we show a sort of synchronization of the whole erythrocytes ensemble.
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Affiliation(s)
- Pasquale Memmolo
- National Council of Research-Istituto di Scienze Applicate e Sistemi Intelligenti "E. Caianiello," Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Francesco Merola
- National Council of Research-Istituto di Scienze Applicate e Sistemi Intelligenti "E. Caianiello," Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Lisa Miccio
- National Council of Research-Istituto di Scienze Applicate e Sistemi Intelligenti "E. Caianiello," Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Martina Mugnano
- National Council of Research-Istituto di Scienze Applicate e Sistemi Intelligenti "E. Caianiello," Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
| | - Pietro Ferraro
- National Council of Research-Istituto di Scienze Applicate e Sistemi Intelligenti "E. Caianiello," Via Campi Flegrei 34, 80078 Pozzuoli, Naples, Italy
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Measuring cell surface area and deformability of individual human red blood cells over blood storage using quantitative phase imaging. Sci Rep 2016; 6:34257. [PMID: 27698484 PMCID: PMC5048416 DOI: 10.1038/srep34257] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Accepted: 09/08/2016] [Indexed: 12/01/2022] Open
Abstract
The functionality and viability of stored human red blood cells (RBCs) is an important clinical issue in transfusions. To systematically investigate changes in stored whole blood, the hematological properties of individual RBCs were quantified in blood samples stored for various periods with and without a preservation solution called citrate phosphate dextrose adenine-1 (CPDA-1). With 3-D quantitative phase imaging techniques, the optical measurements for 3-D refractive index (RI) distributions and membrane fluctuations were done at the individual cell level. From the optical measurements, the morphological (volume, surface area and sphericity), biochemical (hemoglobin content and concentration), and mechanical parameters (dynamic membrane fluctuation) were simultaneously quantified to investigate the functionalities and progressive alterations of stored RBCs. Our results show that stored RBCs without CPDA-1 had a dramatic morphological transformation from discocytes to spherocytes within two weeks which was accompanied by significant decreases in cell deformability and cell surface area, and increases in sphericity. However, the stored RBCs with CPDA-1 maintained their morphology and deformability for up to 6 weeks.
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