Exploiting composting biodiversity: study of the persistent and biotechnologically relevant microorganisms from lignocellulose-based composting

Analyze the impact of lignin depolymerization process and its products on humic substance formation

This study aimed to identify types of lignin depolymerization products (LDP) and their role in humic substances (HS) formation, and little research has revealed which LDP could participate into HS formation during composting. Therefore, rice straw (RS), peanut straw (PS) and pine needles (PN) were selected for their different lignin structures to qualitatively and quantitative analyze LDP firstly. Qualitative results indicated that RS, PS and PN mainly produced LDP with G-type, common group and dimer structure. While quantitative results showed that RS and PS were more prone to degradation, and PN mainly promoted the formation of HS.During the lignin humification, Proteobacteria, Firmicutes, Actinobacteria-dominated microorganisms played a major role in facilitating monomeric substances into HS formation. This study comprehensively analyzed the process of depolymerization and humification of different kinds of lignin. It provides guidance for the resource utilization of lignin and the efficient treatment of agricultural organic waste.

The activation of Parageobacillus toebii in hyperthermophilic composting was depended on the bioavailability of raw materials

Hyperthermophilic composting (HTC) with excellent disposal effect is a novel composting technology by inoculating exogenous thermophilic microorganisms. However, the role of exogenous thermophilic microorganisms in HTC remains debated, especially for the applicability of different compost feedstocks. In this study, the role of Parageobacillus toebii during HTC using chicken and pig manure was investigated. The addition of P. toebii could raise the maximum temperature to 78.2 °C and obviously enhanced maturation effect in chicken manure composting. However, the enhancement effect of P. toebii was weaker in pig manure compost, and the maximum temperature only reached 73 °C. Addition of P. toebii could stimulated functional microbial communities for C&N transformation, increased temperature, and promoted the growth of thermophilic microorganisms in chicken manure composting. Component analyses showed that chicken manure had higher bioavailability compared to pig manure. Correlation analysis indicated that P. toebii activated as a "leader", stimulating metabolic activity among functional microbial communities and enhancing organic matter degradation for heat release, while its activation depended on the bioavailability of the raw material. This study provides important insights into the role and application of exogenous microorganisms in promoting HTC.

Hyperthermophilic composting coupled with vermicomposting stimulates transformation of organic matter by altering bacterial community

Hyperthermophilic composting (HTC) has been proven to be an effective strategy to recycle organic wastes, while vermicomposting (VC) has been widely applied to produce humic fertilizer. The combination of HTC with VC (HVC) is expected to integrate the advantages of both. This study showed that HTC pre-fermentation provided plentiful substances such as dissolved organic matter (DOM) for the subsequent VC enriching humic acid (HA). Compared to thermophilic composting (TC), HVC significantly stimulated the degradation of organic matter (OM) and the production of N-rich HA, and incubated higher diversity of bacterial community. SHapley Additive exPlanations (SHAP), correlation network, Mantel test and PLS-LM model were constructed to identify the potential roles of the key bacterial groups contributing to OM transformation. Firmicutes (e.g., Bacillus and Tuberibacillus) dominant in HTC may mineralize and mobilize OM, providing affluent bioavailable nutrients as part of DOM for microbial metabolism and abundant precursors for HA formation in the further VC. Actinobacteriota (e.g., Microbacterium) and Bacteroidota (e.g., Flavobacterium and Parapedobacter) prominent in VC metabolized DOM, mineralized OM and produced HA probably by enhancing the metabolic activity involved in OM degradation and amino acid generation. However, when DOM was exhausted, some members especially Proteobacteria (e.g., Ochrobactrum, Devosia and Cellvibrio) would change their roles from promoter to inhibitor of mineralization and humification. Altering the nutrient bioavailability and the composition of bacterial community can regulate the mineralization, mobilization and humification of OM. Overall, this study provides new insights into the roles of bacteria participating in transforming organic wastes into HA-rich composts.

Construction of versatile plastic-degrading microbial consortia based on ligninolytic microorganisms associated with agricultural waste composting

The accumulation of plastic in ecosystems is one of the most critical environmental concerns today. Plastic biodegradation using individual microbial cultures has shown limited success, which can be improved by employing microbial consortia with appropriate enzymatic capabilities. This study aims to assemble and characterize microbial consortia using ligninolytic fungi and bacteria isolated from an agricultural waste composting process, with the goal of enhancing the efficiency of plastic biodegradation. The compost microbiome demonstrated plastic-degrading functionality, particularly during the raw material and cooling phases. Ligninolytic microorganisms from compost were characterized for enzymes related to plastic degradation and their ability to colonize plastic films. The genera Bacillus, Pseudomonas, Fusarium, Aspergillus, Scedosporium, and Pseudallescheria exhibited a wide range of activities associated with plastic biodegradation, making them candidates for consortia assembly. The biodegradation of polyethylene using single and consortium cultures revealed that consortia, particularly those combining Bacillus subtilis RBM2 with Fusarium oxysporum RHM1, enhanced degradation efficiency. Additionally, consortia targeting multiple plastics, including virgin and recycled linear low-density polyethylene (LLDPE), polyethylene terephthalate (PET), and polystyrene (PS), showed varying levels of success, with bacterial-bacterial combinations such as Pseudomonas aeruginosa RBM21 and Bacillus subtilis RBM2 demonstrating broad-spectrum plastic degradation. These findings underscore the potential of compost-derived microorganisms for plastic biodegradation and suggest that utilizing microbial consortia offers a promising approach to tackling plastic pollution.

NH3 and greenhouse gas emissions during co-composting of lignite and poultry wastes and the following amendment of co-composted products in soil

Ammonia (NH3) and greenhouse gas (GHG) emissions are substantial contributors to C and N loss in composting. Lignite can increase N retention by absorbing N H 4 + and NH3. However, the effects of co-composting on NH3 and GHG emissions in view of closing nutrient cycle are still poorly investigated. In the study, poultry litter was composted without (CK) or with lignite (T1) or dewatered lignite (T2), and their respective composts N H 4 + Com_CK, Com_T1, and Com_T2) were tested in a soil incubation to assess NH3 and GHG emission during composting and following soil utilization. The cumulative NH3 flux in T1 and T2 were reduced by 39.3% and 50.2%, while N2O emissions were increased by 7.5 and 15.6 times, relative to CK. The total GHG emission in T2 was reduced by 16.8% compared to CK. Lignite addition significantly increased nitrification and denitrification as evidenced by the increased abundances of amoA, amoB, nirK, and nirS. The increased reduction on NH3 emission by dewatered lignite could be attributed to reduced pH and enhanced cation exchangeable capacity than lignite. The increased N2O was related to enhanced nitrification and denitrification. In the soil incubation experiment, compost addition reduced NH3 emission by 72%∼83% while increased emissions of CO2 and N2O by 306%∼740% and 208%∼454%, compared with urea. Com_T2 strongly reduced NH3 and GHG emissions after soil amendment compared to Com_CK. Overall, dewatered lignite, as an effective additive, exhibits great potential to simultaneously mitigate NH3 and GHG secondary pollution during composting and subsequent utilization of manure composts.

Rapid composting of groundnut residues through novel microbial consortium: Evaluating maturity, stability, and microbial activity

A laboratory pot experiment (Experiment 1) was conducted to determine the optimal ratio of groundnut haulm and shell as composting substrates. The aim was to identify the most effective combination for rapid decomposition under in vivo conditions. The experiment was carried out in 2022, from May to July, using a completely randomized design (CRD) with 6 treatments that were replicated 4 times. The treatment combinations in the pot experiment were as follows: T1: haulm + shell (1:1), T2: haulm + shell (2:1), T3: haulm + shell (3:1), T4: T1 + Cn, T5: T2 + Cn, and T6: T3 + Cn. Here, Cn refers to the cellulose-degrading efficient microbial consortium containing bacterial strains Priestia megaterium DBJ6, Micrococcus yunnanensis DMB9, and fungal strains Aspergillus foetidus DAJ2, Trichoderma atrobrunnium DTJ4, and Phanerochaete chrysosporium CBS129.27. Based on the results (results of chemical and biological properties) of the pot experiment, treatment T6 was considered the best treatment (the C/N ratio was 14.36 ± 0.444 after three months of decomposition) for further study under in vivo conditions. The in vivo experiment (Experiment 2) was conducted at the Jaguli Instructional Farm of Bidhan Chandra Krishi Viswavidyalaya, West Bengal, India, during the months of August to October in both 2022 and 2023 with two treatments: the normal composting treatment (NC) and the rapid composting treatment (RC). The findings of Experiment 2 showed that organic substrates degraded more quickly (within 90 days) during rapid composting, as evidenced by a decrease in the C/N ratio to below 15 (14.32 and 13.97 on day 90 in 2022 and 2023, respectively). Whereas, normal composting required more than 90 days to achieve a C/N ratio below 20 (23.80 and 23.15 on day 90 in 2022 and 2023, respectively). The RC treatment also showed a higher microbial population and enzyme activity compared to the NC treatment. Therefore, according to the results of this experiment, it can be concluded that the inoculation of the microbial consortium was more beneficial for accelerating the composting process under the same composting circumstances and substrate ratio.

Microbiome multi-omics can accelerate human excrement composting research

In this editorial, we discuss the need for a new, long-term strategy for managing human excrement (feces and urine) to facilitate health equity and promote environmental sustainability. Human excrement composting (HEC), a human-directed process driven by highly variable and diverse microbiomes, provides a means to advance this need and we discuss how microbiome science can help to advance HEC research. We argue that the technological advancements that have driven the growth of microbiome science, including microbiome and untargeted metabolome profiling, can be leveraged to enhance our understanding of safe and efficient HEC. We conclude by presenting our perspective on how we can begin applying these technologies to develop accessible procedures for safe HEC. Video Abstract.

Identification of bacterial community in a rapid composting method using 16SrDNA genes sequencing

Composting is a process of microbial degradation of organic waste and is commonly applied for waste management. This is a slow process and requires a lot of land and human resources. The present study investigated mechanical augmentation with required microbial culture for composting municipal solid waste (MSW). Thirty isolates were subjected to 16S rDNA PCR amplification and gene sequencing. The isolates' sequencing from the compost samples was processed on BLASTn. Fourteen strains were identified for further experiments. The results divulge that Empedobacter (04), Bacillus (02), Proteus (02), Lactiplantibacillus (01), Klebsiella (01), Citrobacter (01), Brevibacillus (01), E. coli (01) and one unidentified strain were growing during composting. Eleven combinations of bacterial consortium and respective additives were applied for the organic waste decomposition in the next stage, resulting in varied completion periods ranging from 3 to 14 days. Two combinations were completed within 3 days, which are considered ideal combinations for composting. The microbial consortium was significantly diverse, which is a reason for rapid biodegradation. The present study reveals that the technology will be highly feasible for municipal solid waste management in tropical/subtropical countries.

Assessment of microbial flora and pesticidal effect of vermicast generated from Azadirachta indica (neem) for developing a biofertilizer-cum-pesticide as a single package

The soil comprising organic matter, nutrients, serve as substrate for plant growth and various organisms. In areas where there are large plantations, there is a huge leaf litter fall. The leaf litter upon decomposition releases nutrients and helps in nutrient recycling, for which the soil engineers such as earthworms, ants and termites are important key players. In this context, the present study was conducted to assess the characteristics of the vermicast obtained by vermicomposting neem leaf litter in terms of microbial flora, plant growth promoting properties and antagonistic activities of the vermicast against phytopathogens. Vermicomposting of neem leaf litter was done using two epigeic earthworm species Eisenia fetida and Eudrilus eugeniae. The vermicast exhibited antagonistic potential against plant pathogens. Out of the four vermiwash infusions studied, the 75 % formulation reduced the disease incidence against mealybug by 82 % in the tree Neolamarkia cadamba. The result of the study suggests that vermicast made from neem leaf litter may be a potent combination of a biofertilizer and a pesticide.

Synthesis of iron-manganese bimetallic materials supported by activated carbon and application of activated persulfate in the degradation of soil contaminated by crude oil

Heterogeneous catalytic processes based on zero-valent iron (ZVI) have been developed to treat soil and wastewater pollutants. However, the agglomeration of ZVI reduces its ability to activate persulfate (PS). In this study, a new Fe-Mn@AC activated material was prepared to activated PS to treat oil-contaminated soil, and using the microscopic characterization of Fe-Mn@AC materials, the electron transfer mode during the Fe-Mn@AC activation of PS was clarified. Firstly, the petroluem degradation rate was optimized. When the PS addition amount was 8%, Fe-Mn@AC addition amount was 3% and the water to soil ratio was 3:1, the petroluem degradation rate in the soil reached to the maximum of 85.69% after 96 h of reaction. Then it was illustrated that sulfate and hydroxyl radicals played major roles in crude oil degradation, while singlet oxygen contributed slightly. Finally, the indigenous microbial community structures remaining after restoring the Fe-Mn@AC/PS systems were analyzed. The proportion of petroleum degrading bacteria in soil increased by 23% after oxidation by Fe-Mn@AC/PS system. Similarly, the germination rate of wheat seeds revealed that soil toxicity was greatly reduced after applying the Fe-Mn@AC/PS system. After the treatment with Fe-Mn@AC/PS system, the germination rate, root length and bud length of wheat seed were increased by 54.05%, 7.98 mm and 6.84 mm, respectively, compared with the polluted soil group. These results showed that the advanced oxidation system of Fe-Mn@AC activates PS and can be used in crude oil-contaminated soil remediation.

Pilot-scale membrane-covered composting of food waste: Initial moisture, mature compost addition, aeration time and rate

The impact of different operational parameters on the composting efficiency and compost quality during pilot-scale membrane-covered composting (MCC) of food waste (FW) was evaluated. Four factors were assessed in an orthogonal experiment at three different levels: initial mixture moisture (IMM, 55 %, 60 %, and 65 %), aeration time (AT, 6, 9, and 12 h/d), aeration rate (AR, 0.2, 0.4, and 0.6 m3/h) and mature compost addition ratio (MC, 2 %, 4 %, and 6 %). Results indicated that 55 % IMM, 6 h/d AT, 0.4 m3/h AR, and 4 % MC addition ratio simultaneously provided the compost with the maximum cumulative temperature and the minimum moisture. It was shown that the IMM was the driving factor of this optimum composting process. On contrary, the optimal parameters for reducing carbon and nitrogen loss were 65 % IMM, 6 h/d AT, 0.4 m3/h AR, and 2 % MC addition ratio. The AR had the most influence on reducing carbon and nitrogen losses compared to all other factors. The optimal conditions for compost maturity were 55 % IMM, 9 h/d AT, 0.2 m3/h AR, and 6 % MC addition ratio. The primary element influencing the pH and electrical conductivity values was the AR, while the germination index was influenced by IMM. Protein was the main organic matter limiting the composting efficiency. The results of this study will provide guidance for the promotion and application of food waste MCC technology, and contribute to a better understanding of the mechanisms involved in MCC for organic solid waste treatment.

The future in the litter bin - bioconversion of food waste as driver of a circular bioeconomy

Bioconversion of organic waste requires the development and application of rather simple, yet robust technologies capable of transferring biomass into energy and sustainable materials for the future. Food waste plays a significant role in this process as its valorisation reduces waste and at the same time avoids additional exploitation of primary resources. Nonetheless, to literally become "litterate". extensive research into such robust large-scale methods is required. Here, we highlight some promising avenues and materials which fulfill these "waste to value" requirements, from various types of food waste as sustainable sources for biogas, bioethanol and biodiesel to fertilizers and antioxidants from grape pomace, from old-fashioned fermentation to the magic of anaerobic digestion.

Synergistic improvement of humus formation in compost residue by fenton-like and effective microorganism composite agents

Improving the humification of compost through a synergistic approach of biotic and abiotic methods is of great significance. This study employed a composite reagent, comprising Fenton-like agents and effective microorganisms (EM) to improve humification. This composite reagent increased humic-acid production by 37.44 %, reaching 39.82 g kg-1, surpassing the control group. The composite reagent synergistically promoted micromolecular fulvic acid and large humic acid production. Collaborative mechanism suggests that Fenton-like agents contributed to bulk residue decomposition and stimulated the evolution of microbial communities, whereas EMs promoted highly aromatic substance synthesis and adjusted the microbial community structure. Sequencing analysis indicates the Fenton-like agent initiated compost decomposition by Firmicutes, and EM reduced the abundance of Virgibacillus, Lentibacillus, and Alcanivorax. Applied as an organic fertilizer in Brassica chinensis L. plantations, the composite reagent considerably improved growth and photosynthetic pigment content. This composite reagent with biotic and abiotic components provides a learnable method for promoting humification.

The impact of microbial inoculants on large-scale composting of straw and manure under natural low-temperature conditions

Understanding large-scale composting under natural conditions is essential for improving waste management and promoting sustainable agriculture. In this study, corn straw (400 tons) and pig manure (200 tons) were composted with microbial inoculants. The thermophilic phase of composting lasted for fourteen weeks, resulting in an alkaline final product. Microbial systems with low-temperature initiation and high-temperature fermentation played a crucial role in enhancing lignocellulose degradation and humic substances (HS) formation. Adding microbes, including Rhodanobacter, Pseudomonas, and Planococcus, showed a positive correlation with degradation rates of cellulose, hemicellulose, and lignin. Bacillus, Planococcus, and Acinetobacter were positively correlated with HS formation. Microorganisms facilitated efficient hydrolysis of lignocelluloses, providing humic precursors to accelerate composting humification through phenolic protein and Maillard pathways. This study provides significant insights into large-scale composting under natural conditions, contributing to the advancement of waste management strategies and the promotion of sustainable agriculture.

Probiotic characterization of Bacillus smithii: Research advances, concerns, and prospective trends

Bacillus smithii is a thermophilic Bacillus that can be isolated from white wine, hot spring soil, high-temperature compost, and coffee grounds, with various biofunctions and wide applications. It is resistant to both gastric acid and high temperature, which makes it easier to perform probiotic effects than traditional commercial probiotics, so it can maintain good vitality during food processing and has great application prospects. This paper starts with the taxonomy and genetics and focuses on aspects, including genetic transformation, functional enzyme production, waste utilization, and application in the field of food science as a potential probiotic. According to available studies during the past 30 years, we considered that B. smithii is a novel class of microorganisms with a wide range of functional enzymes such as hydrolytic enzymes and hydrolases, as well as resistance to pathogenic bacteria. It is available in waste degradation, organic fertilizer production, the feed and chemical industries, the pharmaceutical sector, and food fortification. Moreover, B. smithii has great potentials for applications in the food industry, as it presents high resistance to the technological processes that guarantee its health benefits. It is also necessary to systematically evaluate the safety, flavor, and texture of B. smithii and explore its biological mechanism of action, which is of great value for further application in multiple fields, especially in food and medicine.

A review of the definition, influencing factors, and mechanisms of rapid composting of organic waste

Composting is a traditional method of treating organic waste. A growing number of studies have been focusing on accelerating the process to achieve "rapid composting." However, the specific definition and influencing factors of rapid composting remain unclear. Therefore, we aimed to gather more insight into the features of rapid composting by reviewing the literature concerning organic waste composting published in the Web of Science database in the past 5 years. We selected 1615 sample studies with "composting" as the subject word and analyzed the effective composting time stated in each study. We defined rapid composting within 15 days using the median test and quartile method. Based on this definition, we summarized the influencing factors of "rapid composting," namely materials, reactors, temperature, and microorganisms. Finally, we summarized two mechanisms related to humus formation during organic waste rapid composting: high temperature-promoting maturation and microbial driving mechanisms. This literature review compiled useful references to help promote the development of rapid composting technology and related equipment.

Humic acid biosynthesis and bacterial community evolution during aerobic composting of rice straw

In this study, the effects of inoculum ratio, substrate particle size and aeration rate on humic acid (HA) biosynthesis during aerobic composting of rice straw were investigated, respectively. The contents of total organic carbon, total nitrogen and HA, as well as lignocellulose degradation in the composting were evaluated, respectively. It is found that the maximal HA yield of 356.9 g kg-1 was obtained at an inoculum ratio of 20%, a substrate particle size of 0.83 mm and an aeration rate of 0.3 L·kg-1 DM min-1 in the process of composting. The changes of microbial communities and metabolic functions at different stages of the composting were also analyzed through high-throughput sequencing. The result demonstrates that Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria were the dominant phyla and their relative abundance significantly varied over time (p < 0.05), and Rhizobium, Phenylobacterium, Pseudoxanthomonas and Paenibacillus were positively related to HA content in the compost. Furthermore, the metabolic function profiles of bacterial community indicate that these functional genes in carbohydrate metabolism and amino acid metabolism were involved in lignocellulose biodegradation and HA biosynthesis. This work may be conducive to explore new regulation strategy to improve bioconversion efficiency of agricultural residues to applicable biofertilizers. KEY POINTS: • Temperature, pH, TOC, TN and C/N caused a great influence on humic acids synthesis • The succession of the microbial community during the composting were evaluated • The metabolisms of carbohydrate and amino acids were involved in HA synthesis.

Microbial agents obtained from tomato straw composting effectively promote tomato straw compost maturation and improve compost quality

Appropriate management of agricultural organic waste (AOW) presents a significant obstacle in the endeavor to attain sustainable agricultural development. The proper management of AOW is a necessity for sustainable agricultural development. This can be done skillfully by incorporating microbial agents in the composting procedure. In this study, we isolated relevant bacteria strains from tomato straw AOW, which demonstrated efficient degradation of lignocellulose without any antagonistic effects in them. These strains were then combined to create a composite microbial agent called Zyco Shield (ZS). The performance of ZS was compared with a commercially effective microorganism (EM) and a control CK. The results indicate that the ZS treatment significantly prolonged the elevated temperature phase of the tomato straw pile, showing considerable degradation of lignocellulosic material. This substantial degradation did not happen in the EM and CK treatments. Moreover, there was a temperature rise of 4-6 ℃ in 2 days of thermophilic phase, which was not the case in the EM and CK treatments. Furthermore, the inoculation of ZS substantially enhanced the degradation of organic waste derived from tomato straw. This method increased the nutrient content of the resulting compost and elevated the enzymatic activity of lignocellulose-degrading enzymes, while reducing the urease enzyme activity within the pile. The concentrations of NH4+-N and NO3--N showed increases of (2.13% and 47.51%), (14.81% and 32.17%) respectively, which is again very different from the results of the EM and CK treatments. To some extent, the alterations observed in the microbial community and the abundance of functional microorganisms provide indirect evidence supporting the fact that the addition of ZS microbial agent facilitates the composting process of tomato straw. Moreover, we confirmed the degradation process of tomato straw through X-ray diffraction, Fourier infrared spectroscopy, and by scanning electron microscopy to analyze the role of ZS microbial inoculum composting. Consequently, reinoculation compost strains improves agricultural waste composting efficiency and enhances product quality.

Mechanisms and effects of novel ammonifying microorganisms on nitrogen ammonification in cow manure waste composting

It is essential to reduce nitrogen losses and to improve nitrogen conversion during organic waste composting because of environmental protection and sustainable development. To reveal newly domesticated ammonifying microorganisms (AM) cultures on the ammonification and nitrogen conversion during the composting, the screened microbial agents were inoculated at 5 % concentration (in weight basis) into cow manure compost under five different treatments: sterilized distilled water (Control), Amm-1 (mesophilic fungus-F1), Amm-2 (mesophilic bacterium-Z1), Amm-3 (thermotolerant bacterium-Z2), and Amm-4 (consortium: F1, Z1, and Z2), and composted for 42 days. Compared to control, AM inoculation prolonged the thermophilic phases to 9-19 days, increased the content of NH4+-N to 1.60-1.96 g/kg in the thermophilic phase, reduced N2O and NH3 emissions by 22.85-61.13 % and 8.45-23.29 %, increased total Kjeldahl nitrogen, and improved cell count and viability by 12.09-71.33 % and 66.71-72.91 %. AM was significantly associated with different nitrogen and microbial compositions. The structural equation model (SEM) reveals NH4+-N is the preferable nitrogen for the majority of bacterial and fungal growth and that AM is closely associated with the conversion between NH3 and NH4+-N. Among the treatments, inoculation with Amm-4 was more effective, as it significantly enhanced the driving effect of the critical microbial composition on nitrogen conversion and accelerated nitrogen ammonification and sequestration. This study provided new concepts for the dynamics of microbial in the ammonification process of new AM bacterial agents in cow manure compost, and an understanding of the ecological mechanism underlying the ammonification process and its contribution to nitrogen (N) cycling from the perspective of microbial communities.

Moderately delayed maturation of composting promotes the reduction of guild-plant pathogenic fungi within vegetable waste

The relationships among the relative abundance of guild-plant pathogenic fungi, compost maturation index, and microbial community variation during vegetable waste composting, which are influenced by the C/N ratio, remain poorly understood. To address this, fungal communities were analyzed in composting treatments with C/N ratios of approximately 15 (CN15) and 25 (CN25), using vegetable waste as the primary raw material. The CN15 treatment showed greater microbial community variation and a better overall compost maturation index value than the CN25 treatment. However, the CN25 treatment had a greater decline in plant-pathogenic fungi than the CN15 treatment. Notably, the relative abundance of guild-plant pathogenic fungi was significantly negatively related to the compost maturity index in the CN25 treatment, while no significant relationship was observed in the CN15 treatment. This study suggests that the moderately delayed maturation of composting is beneficial for reducing guild-plant pathogenic fungi in vegetable waste.

Hyperthermophilic pretreatment composting can reduce ammonia emissions by controlling proteolytic bacterial community and the physicochemical properties

Proteolysis is the rate-limiting step in the mineralization of organic nitrogen into ammonium (NH4+) and thereby the ammonia (NH3) released during the composting. However, the dynamics of bacterial proteolytic communities related to NH3 emissions during the composting systems are mostly unknown. This study aimed to examine and compare the effects of hyperthermophilic pretreatment composting (HPC) and traditional composting (TC) methods on (i) the difference of NH3 loss and nitrogenous compounds; (ii) the dynamics of the proteolytic bacterial community involved in the proteolysis and (iii) the correlation between the proteolytic bacterial community, biophysiochemical characteristics and NH3 loss. Results revealed that the HPC decreased NH3 loss by 42% as compared to TC during 60-day composting period. This was accompanied with an inhibitory effect on protease activity in the HPC where the relative abundances of the proteolytic bacteria (Bacillus megaterium and Staphylococcus cohnii) were reduced significantly as compared to TC. Partial least-squares path modeling suggested that various physicochemical properties such as higher temperature as well as lower C/N ratio during composting played a dominant role in affecting the abundance of proteolytic bacteria, which may have been an important factor contributing to the lower NH3 loss in HPC. All these findings lead us to conclude that the HPC can significantly reduce NH3 loss by inhibiting the proteolytic bacteria and protease activity responsible for NH3 release.

Regulating pH and Phanerochaete chrysosporium inoculation improved the humification and succession of fungal community at the cooling stage of composting

This study aimed to explore the effect of regulating pH and Phanerochaete chrysosporium inoculation at the cooling stage of composting on the lignocellulose degradation, humification process and related precursors as well as fungal community for secondary fermentation. Results showed that composting with P. chrysosporium inoculation and pH regulation (T4) had 58% cellulose decomposition, 73% lignin degradation and improved enzyme activities for lignin decomposition. There was 81.98% increase of humic substance content and more transformation of polyphenols and amino acids in T4 compared to control. Inoculating P. chrysosporium affected the fungal community diversity, and regulating pH helped to increase the colonization of P. chrysosporium. Network analysis showed that the network complexity and synergy between microorganisms was improved in T4. Correlation and Random Forest analysis suggested that enriched Phanerochaete and Thermomyces in the mature stage of T4 were key taxa for lignocellulose degradation, and humic acid formation by accumulating precursors.

Litter mixing promoted decomposition and altered microbial community in common bean root litter

BACKGROUND

Decomposition of plant litter is a key driver of carbon and nutrient cycling in terrestrial ecosystems. Mixing litters of different plant species may alter the decomposition rate, but its effect on the microbial decomposer community in plant litter is not fully understood. Here, we tested the effects of mixing with maize (Zea mays L.) and soybean [Glycine max (Linn.) Merr.] stalk litters on the decomposition and microbial decomposer communities of common bean (Phaseolus vulgaris L.) root litter at the early decomposition stage in a litterbag experiment.

RESULTS

Mixing with maize stalk litter, soybean stalk litter, and both of these litters increased the decomposition rate of common bean root litter at 56 day but not 14 day after incubation. Litter mixing also increased the decomposition rate of the whole liter mixture at 56 day after incubation. Amplicon sequencing found that litter mixing altered the composition of bacterial (at 56 day after incubation) and fungal communities (at both 14 and 56 day after incubation) in common bean root litter. Litter mixing increased the abundance and alpha diversity of fungal communities in common bean root litter at 56 day after incubation. Particularly, litter mixing stimulated certain microbial taxa, such as Fusarium, Aspergillus and Stachybotrys spp. In addition, a pot experiment with adding litters in the soil showed that litter mixing promoted growth of common bean seedlings and increased soil nitrogen and phosphorus contents.

CONCLUSIONS

This study showed that litter mixing can promote the decomposition rate and cause shifts in microbial decomposer communities, which may positively affect crop growth.

Unraveling the effect of added microbial inoculants on ammonia emissions during co-composting of kitchen waste and sawdust: Core microorganisms and functional genes

Despite the role of microorganisms in nitrogen biotransformation has been extensively explored, how microorganisms mitigate NH₃ emissions in the transformation of nitrogen throughout the composting system is rarely addressed. The present study explored the effect of microbial inoculants (MIs) and the contribution of different composted phases (solid, leachate, and gas) on NH₃ emissions by constructing a co-composting system of kitchen waste and sawdust with and without the addition of MI. The results showed that NH₃ emissions increased markedly after adding MIs, in which the contribution of leachate ammonia volatilization to NH₃ emissions was most prominent. The core microorganisms of NH₃ emission had a clear proliferation owing to the MIs reshaping community stochastic process. Also, MIs can strengthen the co-occurrence between microorganisms and functional genes of nitrogen to promote nitrogen metabolism. In particular, the abundances of nrfA, nrfH, and nirB genes, which could augment the dissimilatory nitrate reduction process, were increased, thus enhancing NH₃ emissions. This study bolsters the fundamental, community-level understanding of nitrogen reduction treatments for agricultural.

Development of plastic-degrading microbial consortia by induced selection in microcosms

The increase in the production of highly recalcitrant plastic materials, and their accumulation in ecosystems, generates the need to investigate new sustainable strategies to reduce this type of pollution. Based on recent works, the use of microbial consortia could contribute to improving plastic biodegradation performance. This work deals with the selection and characterization of plastic-degrading microbial consortia using a sequential and induced enrichment technique from artificially contaminated microcosms. The microcosm consisted of a soil sample in which LLDPE (linear low-density polyethylene) was buried. Consortia were obtained from the initial sample by sequential enrichment in a culture medium with LLDPE-type plastic material (in film or powder format) as the sole carbon source. Enrichment cultures were incubated for 105 days with monthly transfer to fresh medium. The abundance and diversity of total bacteria and fungi were monitored. Like LLDPE, lignin is a very complex polymer, so its biodegradation is closely linked to that of some recalcitrant plastics. For this reason, counting of ligninolytic microorganisms from the different enrichments was also performed. Additionally, the consortium members were isolated, molecularly identified and enzymatically characterized. The results revealed a loss of microbial diversity at each culture transfer at the end of the induced selection process. The consortium selected from selective enrichment in cultures with LLDPE in powder form was more effective compared to the consortium selected in cultures with LLDPE in film form, resulting in a reduction of microplastic weight between 2.5 and 5.5%. Some members of the consortia showed a wide range of enzymatic activities related to the degradation of recalcitrant plastic polymers, with Pseudomonas aeruginosa REBP5 or Pseudomonas alloputida REBP7 strains standing out. The strains identified as Castellaniella denitrificans REBF6 and Debaryomyces hansenii RELF8 were also considered relevant members of the consortia although they showed more discrete enzymatic profiles. Other consortium members could collaborate in the prior degradation of additives accompanying the LLDPE polymer, facilitating the subsequent access of other real degraders of the plastic structure. Although preliminary, the microbial consortia selected in this work contribute to the current knowledge of the degradation of recalcitrant plastics of anthropogenic origin accumulated in natural environments.

Effects of functional membrane coverings on carbon and nitrogen evolution during aerobic composting: Insight into the succession of bacterial and fungal communities

Carbon and nitrogen evolution and bacteria and fungi succession in two functional membrane-covered aerobic composting (FMCAC) systems and a conventional aerobic composting system were investigated. The micro-positive pressure in each FMCAC system altered the composting microenvironment, significantly increased the oxygen uptake rates of microbes (p < 0.05), and increased the abundance of cellulose- and hemicellulose-degrading microorganisms. Bacteria and fungi together influenced the conversion between carbon and nitrogen forms. FMCAC made the systems less anaerobic and decreased CH₄ production and emissions by 22.16 %-23.37 % and N₂O production and emissions by 41.34 %-45.37 % but increased organic matter degradation and NH₃ production and emissions by 16.91 %-90.13 %. FMCAC decreased carbon losses, nitrogen losses, and the global warming potential by 7.97 %-11.24 %, 15.43 %-34.00 %, and 39.45 %-42.16 %, respectively. The functional membrane properties (pore size distribution and air permeability) affected fermentation process and gaseous emissions. A comprehensive assessment indicated that FMCAC has excellent prospects for application.

Diversity and enzymatic activity of the microbiota isolated from compost based on restaurant waste and yard trimmings

Introduction

The bad management of organic waste negatively affects environmental quality and composting has been a viable recycling alternative. Microorganisms are responsible for waste degradation during the composting process and, consequently, for transforming this waste into natural fertilizer. This work aimed to analyze and identify the biodiversity of yeasts and filamentous fungi throughout a composting process based on organic residues under different treatments (commercial inoculum, non-commercial inoculum, and control treatment) and to investigate the enzymatic activity of these microorganisms.

Methods

Microorganisms were isolated and identified from samples at 0, 5, 10, 20, 40, 60, and 120 days. Filamentous fungi were identified according to their macroscopic and microscopic characteristics, and yeasts were identified by sequencing the 18S rDNA region. All identified strains were evaluated for ligninolytic, cellulolytic, hemicellulolytic, amylolytic, pectinolytic, proteolytic, lipolytic, and ammonification. During the composting phases, the filamentous fungi were higher than the yeast population.

Results and discussion

At the beginning of the process, a higher species diversity was observed, and the population of yeasts and filamentous fungi was, on average, 6.50 log CFU g−1. The microbial communities were similar throughout the process in the two inoculated treatments, which showed more significant microbial activity, diversity, and efficiency in the transformation of organic matter, and consequently, advantages in terms of the final product quality compared to the control treatment. The yeasts Pichia kudriavzevii, Pichia farinosa, Issatchenkia orientalis, and the filamentous fungi of the genus Aspergillus spp. proved to have high biotechnological value and could be used as starter cultures to accelerate the composting process.

Mechanism analysis of humification coupling metabolic pathways based on cow dung composting with ionic liquids

This study focused on how adding ionic liquids (IL) affects composting humification. During the warming and thermophilic phases, addition of IL increased precursors content, and increased the polymerization of humus (HS) at later stages. Furthermore, the final HS and humic acid (HA) content of experimental groups (T) groups 129.79 mg/g and 79.91 mg/g were higher than in control group (CK) 118.57 mg/g and 74.53 mg/g, respectively (p < 0.05). IL up-regulated the gene abundance of metabolism for carbohydrate and amino acid (AA), and promoted the contributions of Actinobacteria and Proteobacteria, which affected humification. The redundancy analysis (RDA) results showed that the citrate-cycle (TCA cycle)(ko0020), pentose phosphate pathway (ko00030), pyruvate metabolism (ko00620), glyoxylate and dicarboxylate metabolism (ko00630), propanoate metabolism (ko00640), butanoate metabolism (ko00650) positively correlated with HA and HI. HA and humification index (HI) positively correlated with AA metabolic pathways, and fulvic acid (FA) was negatively correlated with these pathways. Overall, metabolism for carbohydrate and AA metabolism favored compost humification. ILs improved metabolism for carbohydrate and amino acid metabolism, thus enhancing humification.

Recent advances in metagenomic analysis of different ecological niches for enhanced biodegradation of recalcitrant lignocellulosic biomass

Lignocellulose wastes stemming from agricultural residues can offer an excellent opportunity as alternative energy solutions in addition to fossil fuels. Besides, the unrestrained burning of agricultural residues can lead to the destruction of the soil microflora and associated soil sterilization. However, the difficulties associated with the biodegradation of lignocellulose biomasses remain as a formidable challenge for their sustainable management. In this respect, metagenomics can be used as an effective option to resolve such dilemma because of its potential as the next generation sequencing technology and bioinformatics tools to harness novel microbial consortia from diverse environments (e.g., soil, alpine forests, and hypersaline/acidic/hot sulfur springs). In light of the challenges associated with the bulk-scale biodegradation of lignocellulose-rich agricultural residues, this review is organized to help delineate the fundamental aspects of metagenomics towards the assessment of the microbial consortia and novel molecules (such as biocatalysts) which are otherwise unidentifiable by conventional laboratory culturing techniques. The discussion is extended further to highlight the recent advancements (e.g., from 2011 to 2022) in metagenomic approaches for the isolation and purification of lignocellulolytic microbes from different ecosystems along with the technical challenges and prospects associated with their wide implementation and scale-up. This review should thus be one of the first comprehensive reports on the metagenomics-based analysis of different environmental samples for the isolation and purification of lignocellulose degrading enzymes.

Dynamics of microbiota and physicochemical characterization of food waste in a new type of composter

Organic wastes are considered the most significant components of urban solid waste, negatively affecting the environment. It is essential to use renewable resources to minimize environmental risks. Composting is one of the most sustainable methods for managing organic waste and involves transforming organic matter into a stable and nutrient-enriched biofertilizer, through the succession of microbial populations into a stabilized product. This work aimed to evaluate the efficiency of the new type of composter and the microbial and physiochemical dynamics during composting aiming to accelerate the degradation of organic waste and produce high-quality compost. Two inoculants were evaluated: (1) efficient microorganisms (EM); (2) commercial inoculum (CI), which were compared to a control treatment, without inoculation. Composting was performed by mixing organic waste from gardening with residues from the University's Restaurant (C/N ratio 30:1). The composting process was carried out in a 1 m3 composter with controlled temperature and aeration. The thermophilic phase for all treatments was reached on the second day. Mature compost was obtained after an average of 120 days, and composting in all treatments showed an increase in the availability of P and micronutrients. The new composter helped to accelerate the decomposition of residues, through the maintenance of adequate oxygen content and temperature control inside the cells, providing high metabolic activity of microorganisms, contributing to an increase in physicochemical characteristics, also reducing the composting time in both treatments. During composting, the bacteria and actinobacteria populations were higher than yeasts and filamentous fungi. The inoculated treatments presented advantages showing more significant mineralization of P-available and micronutrients such as Mn and Zn in terms of the quality of the final product in comparison to the control treatment. Finally, the new composter and the addition of inoculants contributed significantly to the efficiency of the process of composting organic waste.

Exploring the influence mechanisms of polystyrene-microplastics on sewage sludge composting

To explore the influence mechanisms of polystyrene-microplastics (PS-MPs) on sewage sludge composting and put forward relevant composting adjustment strategies, a 30-day sewage sludge (SS) composting experiment was conducted by adding 0%, 0.5%, and 1% (w/w) PS-MPs. The addition of PS-MPs reduced compost temperature, microbial biomass carbon (MBC), and the degradation of volatile solids (2.6%-4.8%), and inhibited the activities of key enzymes (β-glucosidase and alkaline phosphatase) but increased urease activity in the thermophilic phase. Moreover, PS-MPs altered the relative abundance of dominant bacteria and changed the relevance of main enzymes and bacterial communities. Moreover, high levels of PS-MPs inhibited the contribution of dominant bacterial to alkaline phosphatase and β-glucosidase. Redundancy analysis revealed that PS-MPs affected the composting process mainly through reduced MBC at the mesophilic phase and temperature at the thermophilic phase. Thus, regulating MBC and temperature in specific phases could help overcome the adverse effects of PS-MPs on composting.

Carbon and N conservation during composting: A review

Composting, as a conventional solid waste treatment method, plays an essential role in carbon and nitrogen conservation, thereby reducing the loss of nutrients and energy. However, some carbon- and nitrogen-containing gases are inevitably released during the process of composting due to the different operating conditions, resulting in carbon and nitrogen losses. To overcome this obstacle, many researchers have been trying to optimize the adjustment parameters and add some amendments (i.e., pHysical amendments, chemical amendments and microbial amendments) to reduce the losses and enhance carbon and nitrogen conservation. However, investigation regarding mechanisms for the conservation of carbon and nitrogen are limited. Therefore, this review summarizes the studies on physical amendments, chemical amendments and microbial amendments and proposes underlying mechanisms for the enhancement of carbon and nitrogen conservation: adsorption or conversion, and also evaluates their contribution to the mitigation of the greenhouse effect, providing a theoretical basis for subsequent composting-related researchers to better improve carbon and nitrogen conservation measures. This paper also suggests that: assessing the contribution of composting as a process to global greenhouse gas mitigation requires a complete life cycle evaluation of composting. The current lack of compost clinker impact on carbon and nitrogen sequestration capacity of the application site needs to be explored by more research workers.

Optimization of lignocellulolytic bacterial inoculum and substrate mix for lignocellulose degradation and product quality on co-composting of green waste with food waste

The present study evaluates the effect of the mixing ratio of substrates and inoculation with lignocellulolytic bacteria on green waste (GW) and food waste (FW) co-composting. A Box-Behnken design was used to simultaneously optimize the lignocellulose degradation (%LD) and end-product quality. The best operational conditions were 4.85*10⁵ CFU g^-1 of Bacillus sp. F3X3 and 1.44*10⁶ CFU g^-1 of Paenibacillus sp. F1A5 with a substrate mixture containing 50% GW, 32.5% unprocessed FW, 2.5% processed FW, 13% sawdust, and 2% phosphate rock; with a C/N ratio of 27. Under these conditions, the %LD was 33% and the end-product has pH 8.3, TOC 22,4%, TN 1,7%, and a germination index of 103%. Therefore, the product complies with quality standards for organic fertilizers. The results of this study allow the identification of appropriate strategies to optimize GW composting, increasing the degradation of lignocellulose and improving the end-product quality.

Full-Scale of a Compost Process Using Swine Manure, Human Feces, and Rice Straw as Feedstock

Regarding the composting of rural waste, numerous studies either addressed the composting of a single waste component or were conducted at a laboratory/pilot scale. However, far less is known about the mixed composting effect of multi-component rural waste on a large scale. Here, we examined nutrient transformation, maturity degree of decomposition, and succession of microbial communities in large-scale (1,000 kg mixed waste) compost of multi-component wastes previously optimized by response models. The results showed that multi-component compost can achieve the requirement of maturity and exhibit a higher nutritional value in actual compost. It is worth noting that the mixed compost effectively removed pathogenic fungi, in which almost no pathogenic fungi were detected, and only two pathogenic bacteria regrown in the cooling and maturation stages. Structural equation models revealed that the maturity (germination index and the ratio of ammonium to nitrate) of the product was directly influenced by compost properties (electrical conductivity, pH, total organic carbon, moisture, temperature, and total nitrogen) compared with enzymes (cellulase, urease, and polyphenol oxidase) and microbial communities. Moreover, higher contents of total phosphorus, nitrate-nitrogen, and total potassium were conducive to improving compost maturity, whereas relatively lower values of moisture and pH were more advantageous. In addition, compost properties manifested a remarkable indirect effect on maturity by affecting the fungal community (Penicillium and Mycothermus). Collectively, this evidence implies that mixed compost of multi-component rural waste is feasible, and its efficacy can be applied in practical applications. This study provides a solution for the comprehensive treatment and utilization of rural waste.

Integrating 16S rRNA amplicon metagenomics and selective culture for developing thermophilic bacterial inoculants to enhance manure composting

Composting is an important method for treating and recycling organic waste, and the use of microbial inoculants can increase the efficiency of composting. Herein, we illustrate an approach that integrate 16S rRNA amplicon metagenomics and selective culture of thermophilic bacteria for the development of inoculants to improve manure composting. The 16S rRNA amplicon sequencing analysis revealed that Firmicutes and Actinobacteria were dominant in the composting mixture, and that different microbial hubs succeeded during the thermophilic stage. All isolated thermophilic bacteria were affiliated with the order Bacillales, such as Geobacillus, Bacillus, and Aeribacillus. These isolated thermophilic bacteria were grouped into 11 phylotypes, which shared ＞99% sequence identity to 0.15% to 5.32% of 16S rRNA reads by the amplicon sequencing. Three of these phylotypes transiently enriched during the thermophilic stage. Six thermophilic bacteria were selected from the three phylotypes to obtain seven microbial inoculants. Five out of seven of the microbial inoculants enhanced the thermophilic stage of composting by 16.9% to 52.2%. Three-dimensional excitation emission matrix analysis further revealed that two inoculants (Thermoactinomyces intermedius and Ureibacillus thermophilus) stimulated humification. Additionally, the 16S rRNA amplicon sequencing analysis revealed that inoculation with thermophilic bacteria enhanced the succession of the microbial community during composting. In conclusion, 16S rRNA amplicon metagenomics is a useful tool for the development of microbial inoculants to enhance manure composting.

Study on dynamic changes of microbial community and lignocellulose transformation mechanism during green waste composting

There are few reports on the material transformation and dominant microorganisms in the process of greening waste (GW) composting. In this study, the target microbial community succession and material transformation were studied in GW composting by using MiSeq sequencing and PICRUSt tools. The results showed that the composting process could be divided into four phases. Each phase of the composting appeared in turn and was unable to jump. In the calefactive phase, microorganisms decompose small molecular organics such as FA to accelerate the arrival of the thermophilic phase. In the thermophilic phase, thermophilic microorganisms decompose HA and lignocellulose to produce FA. While in the cooling phase, microorganisms degrade HA and FA for growth and reproduction. In the maturation phase, microorganisms synthesize humus using FA, amino acid and lignin nuclei as precursors. In the four phases of the composting, different representative genera of bacteria and fungi were detected. Streptomyces, Myceliophthora and Aspergillus, maintained high abundance in all phases of the compost. Correlation analysis indicated that bacteria, actinomycetes and fungi had synergistic effect on the degradation of lignocellulose. Therefore, it can accelerate the compost process by maintaining the thermophilic phase and adding a certain amount of FA in the maturation phase.

Shifts of bacterial community and molecular ecological network in activated sludge system under ibuprofen stress

The major objectives of this study were to explore the long-term effects of ibuprofen (IBP) on nutrient removal, community compositions, and microbial interactions of the activated sludge system. The results showed that 1 mg/L IBP had no inhibitory effects on the removal of organic matters and nutrients. IBP significantly reduced the microbial diversity and changed the bacterial community structure. Some denitrifiers (Denitratisoma and Hyphomicrobium) increased significantly, while NOB (Nitrospira) significantly decreased under IBP stress (P < 0.05). Furthermore, molecular ecological network analysis indicated that IBP reduced the overall network size and links, but led to a closer network with more efficient communication, which might be the strategy of microbes to survive under the stress of IBP and further maintain the performance stability. Different phylogenetic populations had different responses to IBP, as a closer subnetwork with more synergistic relations was observed in Chloroflexi and a looser subnetwork with more competitive relationships was detected in Proteobacteria. The topological roles of nodes significantly changed, and the putative keystone species decreased under the stress of IBP. This study broadens our knowledge of the long-term effects of IBP on the microbial community structure and the interactions between species in the activated sludge system.

Inoculation of Prickly Pear Litter with Microbial Agents Promotes the Efficiency in Aerobic Composting

Prickly pear (Rosa roxburghii Tratt), a shrub mainly distributed in South China, is an economically essential plant for helping the local people out of poverty. To efficiently provide sufficient nutrients to the plant in the soil for the ecological cultivation of prickly pear, we studied the aerobic composting of a prickly pear litter with three agents, including AC (Bacillus natto, Bacillus sp., Actinomycetes sp., Saccharomyces sp., Trichoderma sp., Azotobacter sp., and Lactobacillus sp.), BC (Bacillus subtilis, Lactobacillaceae sp., Bacillus licheniformis, Saccharomyces sp., and Enterococcus faecalis), and CC (Bacillus sp., Actinomycetes sp., Lactobacillaceae sp., Saccharomyces sp., and Trichoderma sp.) and a control without microbial agents. The results show that the physicochemical and microbial traits of three resultant prickly pear composts were different after the inoculation with AC, BC, or CC. The pH values of three composts ranged from 8.0 to 8.5, and their conductivity values were between 1.6 and 1.9 mS/cm. The seed germination index of all three composts exceeded 70%. The contents of volatile solids and organic matter of the three composts both decreased significantly. The BC maximally increased the total N (18%) of the compost, whereas the CC maximally increased the total P (48%) and total K (38%) contents. Contents of available P and available K of the three composts increased significantly, and the available N content in compost after BC inoculation increased by 16%. The physicochemical features showed that three composts were non-hazardous to plants, and the microbial agents improved nutrient availability. The richness, Chao1, and Shannon index in the bacterial communities of three composts increased significantly. At the phylum level, Proteobacteria, Bacteroidetes, and Firmicutes bacterium became dominant in the three composts, whereas at the family level, Microscillaceae and A4b (phylum Chloroflexi) became the dominant groups. Abundant cellulose-degrading bacteria existed at the dominant phylum level, which promoted fiber degradation in composts. Organic matter and the available N content regulated the composting bacterium. The inoculants enhanced the efficiency of composting: agents B and C were more suitable exogenous inoculants for the composting of a prickly pear litter.

Biochar-based solid acid accelerated carbon conversion by increasing the abundance of thermophilic bacteria in the cow manure composting process

This study investigated the effects of biochar-based solid acids (SAs) on carbon conversion, alpha diversity and bacterial community succession during cow manure composting with the goal of providing a new strategy for rapid carbon conversion during composting. The addition of SA prolonged the thermophilic phase and accelerated the degradation of lignocellulose; in particular, the degradation time of cellulose was shortened by 50% and the humus content was increased by 22.56% compared with the control group (CK). In addition, high-throughput sequencing results showed that SA improved the alpha diversity and the relative abundance of thermophilic bacteria, mainly Actinobacteria, increased by 12.955% compared with CK. A redundancy analysis (RDA) showed that Actinobacteria was positively correlated with the transformation of carbon.

Characteristics of prokaryotic and fungal communities emerged in eco-engineered waste rock - Eucalyptus open woodlands at Ranger uranium mine

Diverse prokaryotic and fungal communities in soil and litters are the structural basis for driving tree litter decomposition and inherent nutrient cycling in infertile Eucalyptus open woodlands. The present investigation characterized the composition and co-occurrence network of prokaryotic and fungal communities in litter and surface soil layers in 9-year old revegetated trial landforms at Ranger uranium mine, Northern Territory, Australia. The revegetated landforms consisted of soil-subsystems engineered from waste rocks and plant-subsystems of young, novel and native Eucalyptus open woodlands. The analysis of litters and surface soil layer revealed highly diverse microbial communities in the young Eucalyptus open woodland systems, which were composed of an average 1155 prokaryotic and 236 fungal OTUs. In the microbial communities, abundant bacterial communities were affiliated to Actinobacteria (30.2%), Proteobacteria (25.3%) and Chloroflexi (16.9%); and fungal communities were highly dominated by Ascomycota (63.4%) and Basidiomycota (23.6%). These OTUs were highly connected, forming microbial modules with >50% of predicted genes associated with metabolism of organics in the open woodland. Soil microbial communities present in the wet season contained a relatively high abundance of ammonium oxidizing archaea, plant associated bacteria, and fungal groups adapted to higher N availability, particularly those from the laterite + waste rock site. The elevated microbial activities in the litters and surface soil of lateritic soil + waste rock landform were attributed to the improved water and nutrient availability by increased fine fraction of laterites. Our study provides evidence that the features of prokaryotic and fungal communities in this eco-engineered and young waste rock - open Eucalyptus woodland systems are consistent with characteristics of microbial communities of native Eucalyptus woodlands to drive the decomposition of low N tree litters.

Metagenomic Analysis of Bacterial Community Structure and Dynamics of a Digestate and a More Stabilized Digestate-Derived Compost from Agricultural Waste

Recycling of different products and waste materials plays a crucial role in circular economy, where the anaerobic digestion (AD) constitutes an important pillar since it reuses nutrients in the form of organic fertilizers. Knowledge about the digestate and compost microbial community structure and its variations over time is important. The aim of the current study was to investigate the microbiome of a slurry cow digestate produced on a farm (ADG) and of a more stabilized digestate-derived compost (DdC) in order to ascertain their potential uses as organic amendments in agriculture. The results from this study, based on a partial fragment of 16S bacterial rRNA NGS sequencing, showed that there is a greater microbial diversity in the DdC originated from agricultural waste compared to the ADG. Overall, the existence of a higher microbial diversity in the DdC was confirmed by an elevated number (1115) of OTUs identified, compared with the ADG (494 OTUs identified). In the DdC, 74 bacterial orders and 125 families were identified, whereas 27 bacterial orders and 54 families were identified in the ADG. Shannon diversity and Chao1 richness indexes were higher in DdC samples compared to ADG ones (Shannon: 3.014 and 1.573, Chao1: 68 and 24.75; p < 0.001 in both cases). A possible association between the microbiome composition at different stages of composting process and the role that these microorganisms may have on the quality of the compost-like substrate and its future uses is also discussed.

Co-elicitation of lignocelluloytic enzymatic activities and metabolites production in an Aspergillus-Streptomyces co-culture during lignocellulose fractionation

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An easy set-up of the co-cultures from 2 different microorganisms (filamentous fungi and bacteria) from different microbial domains resulting into a greater and more diverse metabolic and lignocellulolytic content.

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An over expression of several key enzymatic lignocellulolytic activities is observed during the co-coculture due to elicitation.

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An elicitation of some specific biosynthetic cluster genes is observed due to the activation of those the complexity of the carbon compounds present in the lignocellulose.

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An elicitation of some specific biosynthetic cluster genes is observed only during the co-culture experiment.

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A specific microbial crosstalk and interaction exists at the species level between the 3 Streptomyces and the fungi leading to a specific of lignocellulolytic enzyme and secondary metabolite production.

Lignocellulose, the most abundant biomass on Earth, is a complex recalcitrant material mainly composed of three fractions: cellulose, hemicelluloses and lignins. In nature, lignocellulose is efficiently degraded for carbon recycling. Lignocellulose degradation involves numerous microorganisms and their secreted enzymes that act in synergy. Even they are efficient, the natural processes for lignocellulose degradation are slow (weeks to months). In this study, the objective was to study the synergism of some microorganisms to achieve efficient and rapid lignocellulose degradation. Wheat bran, an abundant co-product from milling industry, was selected as lignocellulosic biomass. Mono-cultures and co-cultures involving one A.niger strain fungi never sequenced before (DSM 1957) and either one of three different Streptomyces strains were tested in order to investigate the potentiality for efficient lignocellulose degradability. Comparative genomics of the strain Aspergillus niger DSM 1957 revealed that it harboured the maximum of AA, CBM, CE and GH among its closest relative strains. The different co-cultures set-up enriched the metabolic diversity and the lignocellulolytic CAZyme content. Depending on the co-cultures, an over-expression of some enzymatic activities (xylanase, glucosidase, arabinosidase) was observed in the co-cultures compared to the mono-cultures suggesting a specific microbial cross-talk depending on the microbial partner. Moreover, metabolomics for each mono and co-culture was performed and revealed an elicitation of the production of secondary metabolites and the activation of silent biosynthetic cluster genes depending on the microbial co-culture. This opens opportunities for the bioproduction of molecules of interest from wheat bran.

Tetracycline hydrochloride-stressed succession in microbial communities during aerobic composting: Insights into bacterial and fungal structures

Available information that whether antibiotics affect the succession in microbial communities during aerobic composting remains limited. Thus, this work investigated the dynamic changes in bacterial and fungal structures during aerobic composting amended with tetracycline hydrochloride (TCH: 0, 50, 150 and 300 mg kg^-1). Composting phases significantly affected bacterial and fungal communities, but only fungi strongly responded to antibiotics, while bacteria did not. Firmicutes, Proteobacteria, Bacteroidota and Actinobacteriota were primary bacterial phylum. Neocallimastigomycota was dominant fungal phylum at temperature-heating phase, then Basidiomycota and Ascomycota became main fungal phylum at thermophilic and temperature-colling phases. Low TCH concentration promoted Chytridiomycota growth, while high TCH concentration inhibited mostly fungal activity in TCH-amended composting. Nitrogen species were critical factors controlling the succession in bacterial and fungal communities during composting process. These results cast a new light on understanding about microbial function during aerobic composting.

Lytic polysaccharide monooxygenases (LPMOs) producing microbes: A novel approach for rapid recycling of agricultural wastes

Out of the huge quantity of agricultural wastes produced globally, rice straw is one of the most abundant ligno-cellulosic waste. For efficient utilization of these wastes, several cost-effective biological processes are available. The practice of field level in-situ or ex-situ decomposition of rice straw is having less degree of adoption due to its poor decomposition ability within a short time span between rice harvest and sowing of the next crop. Agricultural wastes including rice straw are in general utilized by using lignocellulose degrading microbes for industrial metabolite or compost production. However, bioconversion of crystalline cellulose and lignin present in the waste, into simple molecules is a challenging task. To resolve this issue, researchers have identified a novel new generation microbial enzyme i.e., lytic polysaccharide monooxygenases (LPMOs) and reported that the combination of LPMOs with other glycolytic enzymes are found efficient. This review explains the progress made in LPMOs and their role in lignocellulose bioconversion and the possibility of exploring LPMOs producers for rapid decomposition of agricultural wastes. Also, it provides insights to identify the knowledge gaps in improving the potential of the existing ligno-cellulolytic microbial consortium for efficient utilization of agricultural wastes at industrial and field levels.

Efficient degradation of naproxen in a three dimensional biofilm electrode magnetism reactor (3DBEMR): Removal performance and microbial community

A three-dimensional biofilm electrode magnetism reactor (3DBEMR) was constructed to removal naproxen (NPX). This study evaluated 3DBEMR performance in removal of refractory NPX, while also discussing the effect of the electro-magnetic superposition on microbial community by high throughput sequencing. Results indicated that 3DBEMR's average removal rate for NPX stood at 88.36%, representing an increase by 75.24%, 65.03% and 12.36%, respectively, compared to 3DBR (Three-Dimensional Biofilm Reactor), 3DBMR (Three-Dimensional Biofilm Magnetism Reactor) and 3DBER (Three-Dimensional Biofilm Electrode Reactor). This was attributed to the influence of electro-magnetic adsorption, electro-oxidaton/catalysis, and electro-magnetic biodegradation. Another major contributing factor to NPX removal was the presence in 3DBEMR of high-abundance genera such as Rhodobacter, Porphyrobacter, Methyloversatilis, Sphingopyxis,Bosea, Singulisphaera, Sphingomonas. Therefore, the 3DBEMR was successfully demonstrated to be a flexible and effective technique in NPX degradation, which would help to better understand the effect of superposition of electric and magnetic fields on microbial community.

Poplar Sawdust Stack Self-Heating Properties and Variations of Internal Microbial Communities

The heat accumulation generated by microbial metabolic activities during the storage of the sawdust may lead to spontaneous combustion accidents. This paper studied the Critical Ambient Temperature (CAT) variation of poplar sawdust at different stack dimensions and investigated the physicochemical properties as well as microbial community dynamics during the self-heating process of poplar sawdust stacks. From the self-heating substances test experiments and Frank-Kamenetskii (FK) theory, it was found that the CAT of poplar sawdust stacks would decrease from 158.27 °C to 102.46 °C with the increase of stack size from 0.1 m to 3.2 m. From the sawdust stack self-heating experiments, microbial metabolic activities were enhanced with the increasing moisture content (by watering) and oxygen (by turning over), which led to a remarkable increase of the sawdust stack temperature and the rapid decomposition of biochemical components (especially cellulose and hemicellulose). From the microbiological community analysis, at the thermophilic stage (around 60 °C, large amounts of heat release in compost bin), the existence of thermostable bacteria (such as Brevibacillus thermoruber, Bacillus thermoamylovorans and Paenibacillus barengoltzii belonging to Firmicutes) played an important role in degrading organic substances. The heat generated by the microbial metabolic activities might lead to spontaneous combustion eventually if sawdust stack is large enough. Therefore, the sawdust should be stacked in a cool and dry area while avoiding large amounts of storage in high humidity environments.

Influence of microbial inoculants on co-composting of lignocellulosic crop residues with farm animal manure: A review

The rapidly developing agro-industry generates huge amounts of lignocellulosic crop residues and animal manure worldwide. Although co-composting represents a promising and cost-effective method to treat various agricultural wastes simultaneously, poor composting efficiency prolongs total completion time and deteriorates the quality of the final product. However, supplementation of the feedstock with beneficial microorganisms can mitigate these negative effects by facilitating the decomposition of recalcitrant materials, enhancing microbial enzyme activity, and promoting maturation and humus formation during the composting process. Nevertheless, the influence of microbial inoculation may vary greatly depending on certain factors, such as start-up parameters, structure of the feedstock, time of inoculation, and composition of the microbial cultures used. The purpose of this contribution is to review recent developments in co-composting procedures involving different lignocellulosic crop residues and farm animal manure combined with microbial inoculation strategies. To evaluate the effectiveness of microbial additives, the results reported in a large number of peer-reviewed articles were compared in terms of composting process parameters (i.e., temperature, microbial activity, total organic carbon and nitrogen contents, decomposition rate of lignocellulose fractions, etc.) and compost characteristics (humification, C/N ratio, macronutrient content, and germination index). Most studies confirmed that the use of microbial amendments in the co-composting process is an efficient way to facilitate biodegradation and improve the sustainable management of agricultural wastes. Overall, this review paper provides insights into various inoculation techniques, identifies the limitations and current challenges of co-composting, especially with microbial inoculation, and recommends areas for further research in this field.

Efficiency and mechanism of a vermicompost additive in enhancing composting of swine manure

Vermicompost was used as an additive in swine manure composting to investigate the expression of bacterial functional genes on nutrients biotransformation. Three treatments with vermicompost compositions of 10%, 20%, and 30% in swine manure were set up. Raw manure was used as the control. The thermophilic period increased to 12 days, the NH₄⁺ -N/NO₃^- -N ratio decreased to 0.85, and the germination index (GI) increased to 166% after vermicompost addition. Furthermore, higher relative abundances of Firmicutes were observed in the substrate during the initial stages of experiment. The abundance of the dominant phylum Proteobacteria and its related pathogenic genera Acinetobacter and Stenotrophomonas decreased in the thermophilic stage while the potentially beneficial genera Actinomadura and Chryseolinea increased. The expression of primary functional genes associated with the metabolism of carbohydrates, amino acids, xenobiotics, and fatty acids was enhanced during the thermophilic phase. Besides, most dominant genera showed strengthened correlations with NO₃^--N and GI, which were the strongest environmental factors for bacterial communities. Network analysis revealed a new metabolic pathway associated with dominant genera Pseudomonas, Acinetobacter, Stenotrophomonas, and Oceanobacter, whose abundance increased with vermicompost addition. Collectively, the results of this study indicate that vermicompost can promote composting efficiency by increasing the potentially beneficial bacteria, decreasing pathogenic bacteria, and enhancing the metabolic capacity of bacterial communities.

Involvement of the metabolically active bacteria in the organic matter degradation during olive mill waste composting

RNA-based high-throughput sequencing is a valuable tool in the discernment of the implication of metabolically active bacteria during composting. In this study, "alperujo" composting was used as microbial model for the elucidation of structure-function relationships with physicochemical transformation of the organic matter. DNA and RNA, subsequently retrotranscribed into cDNA, were isolated at the mesophilic, thermophilic and maturation phases. 16S rRNA gene was amplified by quantitative PCR (qPCR) and Illumina MiSeq platform to assess bacterial abundance and diversity, respectively. The results showed that the abundance of active bacteria assessed by qPCR was maximum at thermophilic phase, which confirm it as the most active stage of the process. Concerning diversity, Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria were the main phyla presented in composts. Concomitantly, three different behaviours were observed for bacterial dynamics: some genera decreased during the whole process meanwhile others proliferated only at thermophilic or maturation phase. Statistical correlation between physicochemical transformations of the organic matter and bacterial diversity revealed bacterial specialisation. This result indicated that specific groups of bacteria were only involved in the organic matter degradation during bio-oxidative phase or humification at maturation. Metabolic functions predictions confirmed that active bacteria were mainly involved in carbon (C) and nitrogen (N) cycles transformations, and pathogen reduction.