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Yoon DS, Kim DH, Kim JH, Sakakura Y, Hagiwara A, Park HG, Lee MC, Lee JS. Interactions between lipid metabolism and the microbiome in aquatic organisms: A review. MARINE POLLUTION BULLETIN 2024; 207:116858. [PMID: 39159571 DOI: 10.1016/j.marpolbul.2024.116858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 08/08/2024] [Accepted: 08/13/2024] [Indexed: 08/21/2024]
Abstract
Marine organisms' lipid metabolism contributes to marine ecosystems by producing a variety of lipid molecules. Historically, research focused on the lipid metabolism of the organisms themselves. Recent microbiome studies, however, have revealed that gut microbial communities influence the amount and type of lipids absorbed by organisms, thereby altering the organism's lipid metabolism. This has highlighted the growing importance of research on gut microbiota. This review highlights mechanisms by which gut microbiota facilitate lipid digestion and diversify the lipid pool in aquatic animals through the accelerated degradation of exogenous lipids and the transformation of lipid molecules. We also assess how environmental factors and pollutants, along with the innovative use of probiotics, interact with the gut microbiome to influence lipid metabolism within the host. We aim to elucidate the complex interactions between lipid metabolism and gut microbiota in aquatic animals by synthesizing current research and identifying knowledge gaps, providing a foundation for future explorations.
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Affiliation(s)
- Deok-Seo Yoon
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Duck-Hyun Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Jin-Hyoung Kim
- Division of Life Sciences, Korea Polar Research Institute, Incheon, South Korea
| | - Yoshitaka Sakakura
- Graduate School of Integrated Science and Technology, Nagasaki University, Nagasaki, Nagasaki 852-8521, Japan
| | - Atsushi Hagiwara
- Graduate School of Integrated Science and Technology, Nagasaki University, Nagasaki, Nagasaki 852-8521, Japan; Takuyo Co. Ltd., Kengun 1-35-11, Higashi-ku, Kumamoto 862-0911, Japan
| | - Heum Gi Park
- Department of Marine Ecology and Environment, College of Life Sciences, Gangneung-Wonju National University, Gangneung 25457, South Korea
| | - Min-Chul Lee
- Department of Food & Nutrition, College of Bio-Nano Technology, Gachon University, Seongnam 13120, South Korea.
| | - Jae-Seong Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
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2
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Masanja F, Luo X, Jiang X, Xu Y, Mkuye R, Liu Y, Zhao L. Elucidating responses of the intertidal clam Ruditapes philippinarum to compound extreme oceanic events. MARINE POLLUTION BULLETIN 2024; 204:116523. [PMID: 38815474 DOI: 10.1016/j.marpolbul.2024.116523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 04/24/2024] [Accepted: 05/25/2024] [Indexed: 06/01/2024]
Abstract
Ocean acidification and heatwaves caused by rising CO2 affect bivalves and other coastal organisms. Intertidal bivalves are vital to benthic ecosystems, but their physiological and metabolic responses to compound catastrophic climate events are unknown. Here, we examined Manila clam (Ruditapes philippinarum) responses to low pH and heatwaves. Biochemical and gene expression demonstrated that pH and heatwaves greatly affect physiological energy enzymes and genes expression. In the presence of heatwaves, Manila clams expressed more enzymes and genes involved in physiological energetics regardless of acidity, even more so than in the presence of both. In this study, calcifying organisms' biochemical and molecular reactions are more susceptible to temperature rises than acidity. Acclimation under harsh weather conditions was consistent with thermal stress increase at lower biological organization levels. These substantial temporal biochemical and molecular patterns illuminate clam tipping points. This study helps us understand how compound extreme weather and climate events affect coastal bivalves for future conservation efforts.
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Affiliation(s)
| | - Xin Luo
- Fisheries College, Guangdong Ocean University, Zhanjiang, China
| | - Xiaoyan Jiang
- Fisheries College, Guangdong Ocean University, Zhanjiang, China
| | - Yang Xu
- Fisheries College, Guangdong Ocean University, Zhanjiang, China
| | - Robert Mkuye
- Fisheries College, Guangdong Ocean University, Zhanjiang, China
| | - Yong Liu
- Pearl Oyster Research Institute, Guangdong Ocean University, Zhanjiang, China
| | - Liqiang Zhao
- Fisheries College, Guangdong Ocean University, Zhanjiang, China; Guangdong Science and Technology Innovation Center of Marine Invertebrates, Guangdong Ocean University, Zhanjiang, China; Guangdong Provincial Key Laboratory of Aquatic Animal Disease Control and Healthy Culture, Guangdong Ocean University, Zhanjiang, China.
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3
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Zhong KX, Chan AM, Collicutt B, Daspe M, Finke JF, Foss M, Green TJ, Harley CDG, Hesketh AV, Miller KM, Otto SP, Rolheiser K, Saunders R, Sutherland BJG, Suttle CA. The prokaryotic and eukaryotic microbiome of Pacific oyster spat is shaped by ocean warming but not acidification. Appl Environ Microbiol 2024; 90:e0005224. [PMID: 38466091 PMCID: PMC11022565 DOI: 10.1128/aem.00052-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 02/18/2024] [Indexed: 03/12/2024] Open
Abstract
Pacific oysters (Magallana gigas, a.k.a. Crassostrea gigas), the most widely farmed oysters, are under threat from climate change and emerging pathogens. In part, their resilience may be affected by their microbiome, which, in turn, may be influenced by ocean warming and acidification. To understand these impacts, we exposed early-development Pacific oyster spat to different temperatures (18°C and 24°C) and pCO2 levels (800, 1,600, and 2,800 µatm) in a fully crossed design for 3 weeks. Under all conditions, the microbiome changed over time, with a large decrease in the relative abundance of potentially pathogenic ciliates (Uronema marinum) in all treatments with time. The microbiome composition differed significantly with temperature, but not acidification, indicating that Pacific oyster spat microbiomes can be altered by ocean warming but is resilient to ocean acidification in our experiments. Microbial taxa differed in relative abundance with temperature, implying different adaptive strategies and ecological specializations among microorganisms. Additionally, a small proportion (~0.2% of the total taxa) of the relatively abundant microbial taxa were core constituents (>50% occurrence among samples) across different temperatures, pCO2 levels, or time. Some taxa, including A4b bacteria and members of the family Saprospiraceae in the phyla Chloroflexi (syn. Chloroflexota) and Bacteroidetes (syn. Bacteroidota), respectively, as well as protists in the genera Labyrinthula and Aplanochytrium in the class Labyrinthulomycetes, and Pseudoperkinsus tapetis in the class Ichthyosporea were core constituents across temperatures, pCO2 levels, and time, suggesting that they play an important, albeit unknown, role in maintaining the structural and functional stability of the Pacific oyster spat microbiome in response to ocean warming and acidification. These findings highlight the flexibility of the spat microbiome to environmental changes.IMPORTANCEPacific oysters are the most economically important and widely farmed species of oyster, and their production depends on healthy oyster spat. In turn, spat health and productivity are affected by the associated microbiota; yet, studies have not scrutinized the effects of temperature and pCO2 on the prokaryotic and eukaryotic microbiomes of spat. Here, we show that both the prokaryotic and, for the first time, eukaryotic microbiome of Pacific oyster spat are surprisingly resilient to changes in acidification, but sensitive to ocean warming. The findings have potential implications for oyster survival amid climate change and underscore the need to understand temperature and pCO2 effects on the microbiome and the cascading effects on oyster health and productivity.
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Affiliation(s)
- Kevin Xu Zhong
- Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Amy M. Chan
- Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada
| | | | - Maxim Daspe
- Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Jan F. Finke
- Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada
- Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Megan Foss
- Hakai Institute, Heriot Bay, British Columbia, Canada
| | - Timothy J. Green
- Centre for Shellfish Research, Vancouver Island University, Nanaimo, British Columbia, Canada
- Department of Fisheries and Aquaculture, Vancouver Island University, Nanaimo, British Columbia, Canada
| | - Christopher D. G. Harley
- Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada
- Institute for the Oceans and Fisheries, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Amelia V. Hesketh
- Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Kristina M. Miller
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Sarah P. Otto
- Department of Zoology, The University of British Columbia, Vancouver, British Columbia, Canada
| | | | | | - Ben J. G. Sutherland
- Pacific Biological Station, Fisheries and Oceans Canada, Nanaimo, British Columbia, Canada
| | - Curtis A. Suttle
- Department of Earth, Ocean, and Atmospheric Sciences, The University of British Columbia, Vancouver, British Columbia, Canada
- Institute for the Oceans and Fisheries, The University of British Columbia, Vancouver, British Columbia, Canada
- Department of Microbiology and Immunology, The University of British Columbia, Vancouver, British Columbia, Canada
- Department of Botany, The University of British Columbia, Vancouver, British Columbia, Canada
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4
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González-Aravena M, Perrois G, Font A, Cárdenas CA, Rondon R. Microbiome profile of the Antarctic clam Laternula elliptica. Braz J Microbiol 2024; 55:487-497. [PMID: 38157148 PMCID: PMC10920576 DOI: 10.1007/s42770-023-01200-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 11/27/2023] [Indexed: 01/03/2024] Open
Abstract
The filter feeder clam Laternula elliptica is a key species in the Antarctic ecosystem. As a stenothermal benthic species, it has a poor capacity for adaptation to small temperature variations. Despite their ecological importance and sensitivity to climate change, studies on their microbiomes are lacking. The goal of this study was to characterize the bacterial communities of L. elliptica and the tissues variability of this microbiome to provide an initial insight of host-microbiota interactions. We investigated the diversity and taxonomic composition of bacterial communities of L. elliptica from five regions of the body using high-throughput 16S rRNA gene sequencing. The results showed that the microbiome of L. elliptica tended to differ from that of the surrounding seawater samples. However, there were no significant differences in the microbial composition between the body sites, and only two OTUs were present in all samples, being considered core microbiome (genus Moritella and Polaribacter). No significant differences were detected in diversity indexes among tissues (mean 626.85 for observed OTUs, 628.89 Chao1, 5.42 Shannon, and 0.87 Simpson). Rarefaction analysis revealed that most tissues reached a plateau of OTU number according to sample increase, with the exception of Siphon samples. Psychromonas and Psychrilyobacter were particularly abundant in L. elliptica whereas Fluviicola dominated seawater and siphons. Typical polar bacteria were Polaribacter, Shewanella, Colwellia, and Moritella. We detected the prevalence of pathogenic bacterial sequences, particularly in the family Arcobacteraceae, Pseudomonadaceae, and Mycoplasmataceae. The prokaryotic diversity was similar among tissues, as well as their taxonomic composition, suggesting a homogeneity of the microbiome along L. elliptica body. The Antarctic clam population can be used to monitor the impact of human activity in areas near Antarctic stations that discharge wastewater.
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Affiliation(s)
| | - Garance Perrois
- Departamento Científico, Instituto Antártico Chileno, Punta Arenas, Chile
- Tropical & Subtropical Research Center, Korea Institute of Ocean Science & Technology, Busan, Republic of Korea
| | - Alejandro Font
- Departamento Científico, Instituto Antártico Chileno, Punta Arenas, Chile
| | - César A Cárdenas
- Departamento Científico, Instituto Antártico Chileno, Punta Arenas, Chile
- Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems (BASE), Santiago, Chile
| | - Rodolfo Rondon
- Departamento Científico, Instituto Antártico Chileno, Punta Arenas, Chile.
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Seo H, Cho B, Joo S, Ahn IY, Kim T. Archival records of the Antarctic clam shells from Marian Cove, King George Island suggest a protective mechanism against ocean acidification. MARINE POLLUTION BULLETIN 2024; 200:116052. [PMID: 38290361 DOI: 10.1016/j.marpolbul.2024.116052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 01/12/2024] [Accepted: 01/13/2024] [Indexed: 02/01/2024]
Abstract
Continuous emissions of anthropogenic CO2 are changing the atmospheric and oceanic environment. Although some species may have compensatory mechanisms to acclimatize or adapt to the changing environment, most marine organisms are negatively influenced by climate change. In this study, we aimed to understand the compensatory mechanisms of the Antarctic clam, Laternula elliptica, to climate-related stressors by using archived shells from 1995 to 2018. Principal component analysis revealed that seawater pCO2 and salinity in the Antarctic Ocean, which have increased since the 2000's, are the most influential factors on the characteristics of the shell. The periostracum thickness ratio and nitrogen on the outermost surface have increased, and the dissolution area (%) has decreased. Furthermore, the calcium content and mechanical properties of the shells have not changed. The results suggest that L. elliptica retains the mechanism of protecting the shell from high pCO2 by thickening the periostracum as a phenotype plasticity.
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Affiliation(s)
- Hyein Seo
- Program in Biomedical Science and Engineering, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea; Department of Ocean Sciences, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea
| | - Boongho Cho
- Program in Biomedical Science and Engineering, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea; Department of Ocean Sciences, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea
| | - Soobin Joo
- Program in Biomedical Science and Engineering, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea; Department of Ocean Sciences, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea
| | - In-Young Ahn
- Korea Polar Research Institute, 26 songdomirae-ro, Yeonsu-gu, Incheon 21990, Republic of Korea
| | - Taewon Kim
- Program in Biomedical Science and Engineering, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea; Department of Ocean Sciences, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea.
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6
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Liu X, Huang L, Lim L, Fazhan H, Tan K. The impact of elevated temperature on the macro-nutrients of commercially important marine bivalves: the implication of ocean warming. Crit Rev Food Sci Nutr 2024:1-8. [PMID: 38294719 DOI: 10.1080/10408398.2023.2301432] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
Bivalves are nutritious animal protein source for humans, rich in high quality proteins, lipids, and carbohydrates. Many studies have shown that ocean warming has detrimental effects on the nutritional quality of bivalves. Although a number of studies are available on the effect of ocean warming on the nutritional value of bivalves, this information is not well organized. In this context, the current study provides a critical review of the effects of ocean warming on the nutritional quality of commercially important edible marine bivalves. In general, ocean warming has caused a reduction in the total lipid and carbohydrate content of bivalves, especially those bivalves inhabiting temperate regions. As for protein, there is no general trend in the effects of ocean warming on the protein reserves of bivalves. In addition, the specific effects of elevated temperature on the macro-nutrients of bivalves highly depend on the tissues, sex and developmental stages of bivalves, as well as seasonal factors. This review not only fills in the knowledge gap regarding the effects of elevated temperature on the macro-nutrients of commercially important marine bivalves but also provides guidance for the establishment of bivalve aquaculture and fisheries management plans to mitigate the impact of climate change.
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Affiliation(s)
- Xiaoxia Liu
- College of Economics and Management, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Qinzhou, Guangxi, China
| | - Leiheng Huang
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Qinzhou, Guangxi, China
| | - Leongseng Lim
- Borneo Marine Research Institute, University Malaysia Sabah, Sabah, Malaysia
| | - Hanafiah Fazhan
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, University Malaysia Terengganu, Kuala Terengganu, Malaysia
| | - Karsoon Tan
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Qinzhou, Guangxi, China
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7
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Tan K, Ransangan J, Tan K, Cheong KL. The impact of climate change on Omega-3 long-chain polyunsaturated fatty acids in bivalves. Crit Rev Food Sci Nutr 2023:1-11. [PMID: 37555502 DOI: 10.1080/10408398.2023.2242943] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/10/2023]
Abstract
Omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) have many health benefits to human. Increasing evidence have shown that climate change reduces the availability of plankton n-3 LC-PUFA to primary consumers which potentially reduces the availability of n-3 LC-PUFA to human. Since marine bivalves are an important source of n-3 LC-PUFA for human beings, and bivalve aquaculture completely depends on phytoplankton in ambient water as food, it is important to understand the impact of climate change on the lipid nutritional quality of bivalves. In this study, fatty acid profile of different bivalves (mussels, oysters, clams, scallops and cockles) from different regions (tropical, subtropical and temperate) and time (before 1990, 1991-1995, 1996-2000, 2001-2005, 2006-2010, 2011-2015, 2016-2020) were extracted from published literature to calculate various lipid nutritional quality indicators. The results of this study revealed that the effects of global warming and declines in aragonite saturation state on the lipid content and lipid indices of bivalves are highly dependent on the geographical region and bivalves. In general, global warming has the largest negative impact on the lipid content and indices of temperate bivalves, including decreasing the PUFA/SFA, EPA + DHA and n-3/n-6. However, global warming has a much smaller negative impact on lipid content and lipid indices in other regions. The declines of aragonite saturation state in seawater promotes the accumulation of lipid content in tropical and subtropical bivalves, but it compromised the PUFA/SFA, EPA + DHA and n-3/n-6 of bivalves in all regions. The findings of this study not only fill the knowledge gap of the impact of climate change on the lipid nutritional quality of bivalves, but also provide guidance for the establishment of bivalve aquaculture and fisheries management plans to mitigate the impact of climate change.
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Affiliation(s)
- Karsoon Tan
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Centre, Beibu Gulf University, Qinzhou, Guangxi, China
| | - Julian Ransangan
- Borneo Marine Research Institute, Universiti Malaysia Sabah, Sabah, Malaysia
| | - Kianann Tan
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Centre, Beibu Gulf University, Qinzhou, Guangxi, China
| | - Kit-Leong Cheong
- Guangdong Provincial Key Laboratory of Aquatic Product Processing and Safety, College of Food Science and Technology, Guangdong Ocean University, Zhanjiang, China
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8
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Yoon DS, Byeon E, Kim DH, Lee MC, Shin KH, Hagiwara A, Park HG, Lee JS. Effects of temperature and combinational exposures on lipid metabolism in aquatic invertebrates. Comp Biochem Physiol C Toxicol Pharmacol 2022; 262:109449. [PMID: 36055628 DOI: 10.1016/j.cbpc.2022.109449] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 08/22/2022] [Accepted: 08/29/2022] [Indexed: 11/17/2022]
Abstract
Studies of changes in fatty acids in response to environmental temperature changes have been conducted in many species, particularly mammals. However, few studies have considered aquatic invertebrates, even though they are particularly vulnerable to changes in environmental temperature. In this review, we summarize the process by which animals synthesize common fatty acids and point out differences between the fatty acid profiles of vertebrates and those of aquatic invertebrates. Unlike vertebrates, some aquatic invertebrates can directly synthesize polyunsaturated fatty acids (PUFAs), which can be used to respond to temperature changes. Various studies have shown that aquatic invertebrates increase the degree of saturation in their fatty acids through an increase in saturated fatty acid production or a decrease in PUFAs as the temperature increases. In addition, we summarize recent studies that have examined the complex effects of temperature and combinational stressors to determine whether the degree of saturation in aquatic invertebrates is influenced by other factors. The combined effects of carbon dioxide partial pressure, food quality, starvation, salinity, and chemical exposures have been confirmed, and fatty acid profile changes in response to high temperature were greater than those from combinational stressors.
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Affiliation(s)
- Deok-Seo Yoon
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Eunjin Byeon
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Duck-Hyun Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Min-Chul Lee
- Department of Food & Nutrition, College of Bio-Nano Technology, Gachon University, Seongnam 13120, South Korea
| | - Kyung-Hoon Shin
- Department of Marine Science and Convergence Engineering, Hanyang University, Ansan 15588, South Korea
| | - Atsushi Hagiwara
- Graduate School of Fisheries and Environmental Sciences, Nagasaki University, Nagasaki 852-8521, Japan
| | - Heum Gi Park
- Department of Marine Ecology and Environment, College of Life Sciences, Gangneung-Wonju National University, Gangneung 25457, South Korea.
| | - Jae-Seong Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
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9
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Gurr SJ, Trigg SA, Vadopalas B, Roberts SB, Putnam HM. Acclimatory gene expression of primed clams enhances robustness to elevated pCO 2. Mol Ecol 2022; 31:5005-5023. [PMID: 35947503 DOI: 10.1111/mec.16644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 11/30/2022]
Abstract
Sub-lethal exposure to environmental challenges may enhance ability to cope with chronic or repeated change, a process known as priming. In a previous study, pre-exposure to seawater enriched with pCO2 improved growth and reduced antioxidant capacity of juvenile Pacific geoduck Panopea generosa, suggesting that transcriptional shifts may drive phenotypic modifications post-priming. To this end, juvenile clams were sampled and TagSeq gene expression data analyzed after 1) a 110-day acclimation under ambient (921 μatm, naïve) and moderately-elevated pCO2 (2870 μatm, pre-exposed); then following 2) a second 7-day exposure to three pCO2 treatments (ambient: 754 μatm; moderately-elevated: 2750 μatm; severely-elevated: 4940 μatm), a 7-day return to ambient pCO2 , and a third 7-day exposure to two pCO2 treatments (ambient: 967 μatm; moderately-elevated: 3030 μatm). Pre-exposed geoducks frontloaded genes for stress and apoptosis/innate immune response, homeostatic processes, protein degradation, and transcriptional modifiers. Pre-exposed geoducks were also responsive to subsequent encounters, with gene sets enriched for mitochondrial recycling and immune defense under elevated pCO2 and energy metabolism and biosynthesis under ambient recovery. In contrast, gene sets with higher expression in naïve clams were enriched for fatty-acid degradation and glutathione components, suggesting naïve clams could be depleting endogenous fuels, with unsustainable energetic requirements if changes in carbonate chemistry persist. Collectively, our transcriptomic data indicates pCO2 priming during post-larval periods could, via gene expression regulation, enhance robustness in bivalves to environmental change. Such priming approaches may be beneficial for aquaculture, as seafood demand intensifies concurrent with increasing climate change in marine systems.
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Affiliation(s)
- Samuel J Gurr
- Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA
| | - Shelly A Trigg
- University of Washington, School of Aquatic and Fishery Sciences, Seattle, WA, USA
| | | | - Steven B Roberts
- University of Washington, School of Aquatic and Fishery Sciences, Seattle, WA, USA
| | - Hollie M Putnam
- Department of Biological Sciences, University of Rhode Island, Kingston, RI, USA
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10
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Lutier M, Di Poi C, Gazeau F, Appolis A, Le Luyer J, Pernet F. Revisiting tolerance to ocean acidification: Insights from a new framework combining physiological and molecular tipping points of Pacific oyster. GLOBAL CHANGE BIOLOGY 2022; 28:3333-3348. [PMID: 35092108 DOI: 10.1111/gcb.16101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 12/02/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
Studies on the impact of ocean acidification on marine organisms involve exposing organisms to future acidification scenarios, which has limited relevance for coastal calcifiers living in a mosaic of habitats. Identification of tipping points beyond which detrimental effects are observed is a widely generalizable proxy of acidification susceptibility at the population level. This approach is limited to a handful of studies that focus on only a few macro-physiological traits, thus overlooking the whole organism response. Here we develop a framework to analyze the broad macro-physiological and molecular responses over a wide pH range in juvenile oyster. We identify low tipping points for physiological traits at pH 7.3-6.9 that coincide with a major reshuffling in membrane lipids and transcriptome. In contrast, a drop in pH affects shell parameters above tipping points, likely impacting animal fitness. These findings were made possible by the development of an innovative methodology to synthesize and identify the main patterns of variations in large -omic data sets, fitting them to pH and identifying molecular tipping points. We propose the broad application of our framework to the assessment of effects of global change on other organisms.
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Affiliation(s)
| | - Carole Di Poi
- Univ Brest, Ifremer, CNRS, IRD, LEMAR, Plouzané, France
| | - Frédéric Gazeau
- Laboratoire d'Océanographie de Villefranche, LOV Sorbonne Université, CNRS, Villefranche-sur-Mer, France
| | | | - Jérémy Le Luyer
- EIO UPF/IRD/ILM/Ifremer, Labex CORAIL, Unité RMPF, Centre Océanologique du Pacifique, Vairao, French Polynesia
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11
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Shalders TC, Champion C, Coleman MA, Benkendorff K. The nutritional and sensory quality of seafood in a changing climate. MARINE ENVIRONMENTAL RESEARCH 2022; 176:105590. [PMID: 35255319 DOI: 10.1016/j.marenvres.2022.105590] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/14/2022] [Accepted: 02/19/2022] [Indexed: 06/14/2023]
Abstract
Climate change is impacting living marine resources, whilst concomitantly, global reliance on seafood as a source of nutrition is increasing. Here we review an emerging research frontier, identifying significant impacts of climate-driven environmental change on the nutritional and sensory quality of seafood, and implications for human health. We highlight that changing ocean temperature, pH and salinity can lead to reductions in seafood macro and micronutrients, including essential nutrients such as protein and lipids. However, the nutritional quality of seafood appears to be more resilient in taxa that inhabit naturally variable environments such as estuaries and shallow near-coastal habitats. We develop criteria for assessing confidence in categorising the nutritional quality of seafood as vulnerable or resilient to climate change. The application of this criteria to a subset of seafood nutritional studies demonstrates confidence levels are generally low and could be improved by more realistic experimental designs and research collaboration. We highlight knowledge gaps to guide future research in this emerging field.
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Affiliation(s)
- Tanika C Shalders
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia.
| | - Curtis Champion
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Melinda A Coleman
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia; Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, Coffs Harbour, New South Wales, Australia
| | - Kirsten Benkendorff
- National Marine Science Centre, Southern Cross University, Faculty of Science and Engineering, Coffs Harbour, New South Wales, Australia
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12
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Baag S, Mandal S. Combined effects of ocean warming and acidification on marine fish and shellfish: A molecule to ecosystem perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 802:149807. [PMID: 34450439 DOI: 10.1016/j.scitotenv.2021.149807] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 08/06/2021] [Accepted: 08/17/2021] [Indexed: 06/13/2023]
Abstract
It is expected that by 2050 human population will exceed nine billion leading to increased pressure on marine ecosystems. Therefore, it is conjectured various levels of ecosystem functioning starting from individual to population-level, species distribution, food webs and trophic interaction dynamics will be severely jeopardized in coming decades. Ocean warming and acidification are two prime threats to marine biota, yet studies about their cumulative effect on marine fish and shellfishes are still in its infancy. This review assesses existing information regarding the interactive effects of global environmental factors like warming and acidification in the perspective of marine capture fisheries and aquaculture industry. As climate change continues, distribution pattern of species is likely to be altered which will impact fisheries and fishing patterns. Our work is an attempt to compile the existing literatures in the biological perspective of the above-mentioned stressors and accentuate a clear outline of knowledge in this subject. We reviewed studies deciphering the biological consequences of warming and acidification on fish and shellfishes in the light of a molecule to ecosystem perspective. Here, for the first time impacts of these two global environmental drivers are discussed in a holistic manner taking into account growth, survival, behavioural response, prey predator dynamics, calcification, biomineralization, reproduction, physiology, thermal tolerance, molecular level responses as well as immune system and disease susceptibility. We suggest urgent focus on more robust, long term, comprehensive and ecologically realistic studies that will significantly contribute to the understanding of organism's response to climate change for sustainable capture fisheries and aquaculture.
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Affiliation(s)
- Sritama Baag
- Marine Ecology Laboratory, Department of Life Sciences, Presidency University, 86/1, College Street, Kolkata 700073, India
| | - Sumit Mandal
- Marine Ecology Laboratory, Department of Life Sciences, Presidency University, 86/1, College Street, Kolkata 700073, India.
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13
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Scanes E, Parker LM, Seymour JR, Siboni N, Dove MC, O'Connor WA, Ross PM. Microbiomes of an oyster are shaped by metabolism and environment. Sci Rep 2021; 11:21112. [PMID: 34702926 PMCID: PMC8548560 DOI: 10.1038/s41598-021-00590-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 10/14/2021] [Indexed: 11/24/2022] Open
Abstract
Microbiomes can both influence and be influenced by metabolism, but this relationship remains unexplored for invertebrates. We examined the relationship between microbiome and metabolism in response to climate change using oysters as a model marine invertebrate. Oysters form economies and ecosystems across the globe, yet are vulnerable to climate change. Nine genetic lineages of the oyster Saccostrea glomerata were exposed to ambient and elevated temperature and PCO2 treatments. The metabolic rate (MR) and metabolic by-products of extracellular pH and CO2 were measured. The oyster-associated bacterial community in haemolymph was characterised using 16 s rRNA gene sequencing. We found a significant negative relationship between MR and bacterial richness. Bacterial community composition was also significantly influenced by MR, extracellular CO2 and extracellular pH. The effects of extracellular CO2 depended on genotype, and the effects of extracellular pH depended on CO2 and temperature treatments. Changes in MR aligned with a shift in the relative abundance of 152 Amplicon Sequencing Variants (ASVs), with 113 negatively correlated with MR. Some spirochaete ASVs showed positive relationships with MR. We have identified a clear relationship between host metabolism and the microbiome in oysters. Altering this relationship will likely have consequences for the 12 billion USD oyster economy.
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Affiliation(s)
- Elliot Scanes
- School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW, 2006, Australia.
- Climate Change Cluster, University of Technology Sydney, Vicki Sara Building, Ultimo, NSW, 2007, Australia.
| | - Laura M Parker
- School of Biological, Earth and Environmental Sciences, The University of New South Wales, Kensington, NSW, 2052, Australia
| | - Justin R Seymour
- Climate Change Cluster, University of Technology Sydney, Vicki Sara Building, Ultimo, NSW, 2007, Australia
| | - Nachshon Siboni
- Climate Change Cluster, University of Technology Sydney, Vicki Sara Building, Ultimo, NSW, 2007, Australia
| | - Michael C Dove
- New South Wales Department of Primary Industries, Port Stephens Fisheries Institute, Taylors Beach, NSW, 2316, Australia
| | - Wayne A O'Connor
- New South Wales Department of Primary Industries, Port Stephens Fisheries Institute, Taylors Beach, NSW, 2316, Australia
| | - Pauline M Ross
- School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW, 2006, Australia
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14
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Scanes E, Parker LM, Seymour JR, Siboni N, King WL, Danckert NP, Wegner KM, Dove MC, O'Connor WA, Ross PM. Climate change alters the haemolymph microbiome of oysters. MARINE POLLUTION BULLETIN 2021; 164:111991. [PMID: 33485019 DOI: 10.1016/j.marpolbul.2021.111991] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 12/14/2020] [Accepted: 12/20/2020] [Indexed: 06/12/2023]
Abstract
The wellbeing of marine organisms is connected to their microbiome. Oysters are a vital food source and provide ecological services, yet little is known about how climate change such as ocean acidification and warming will affect their microbiome. We exposed the Sydney rock oyster, Saccostrea glomerata, to orthogonal combinations of temperature (24, 28 °C) and pCO2 (400 and 1000 μatm) for eight weeks and used amplicon sequencing of the 16S rRNA (V3-V4) gene to characterise the bacterial community in haemolymph. Overall, elevated pCO2 and temperature interacted to alter the microbiome of oysters, with a clear partitioning of treatments in CAP ordinations. Elevated pCO2 was the strongest driver of species diversity and richness and elevated temperature also increased species richness. Climate change, both ocean acidification and warming, will alter the microbiome of S. glomerata which may increase the susceptibility of oysters to disease.
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Affiliation(s)
- Elliot Scanes
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales 2006, Australia.
| | - Laura M Parker
- The University of New South Wales, School of Biological, Earth and Environmental Sciences, Kensington, New South Wales 2052, Australia
| | - Justin R Seymour
- Climate Change Cluster, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
| | - Nachshon Siboni
- Climate Change Cluster, University of Technology Sydney, Ultimo, New South Wales 2007, Australia
| | - William L King
- Climate Change Cluster, University of Technology Sydney, Ultimo, New South Wales 2007, Australia; Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA 16802, USA
| | - Nathan P Danckert
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales 2006, Australia
| | - K Mathias Wegner
- Helmholtz Centre for Polar and Marine Research, Alfred Wegener Institute, Coastal Ecology, Wadden Sea Station, List, Sylt 25992, Germany
| | - Michael C Dove
- New South Wales Department of Primary Industries, Port Stephens Fisheries Institute, Taylors Beach, New South Wales 2316, Australia
| | - Wayne A O'Connor
- New South Wales Department of Primary Industries, Port Stephens Fisheries Institute, Taylors Beach, New South Wales 2316, Australia
| | - Pauline M Ross
- The University of Sydney, School of Life and Environmental Sciences, Camperdown, New South Wales 2006, Australia
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15
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Evans TG, Logan CA. Mechanisms of biological sensitivity and resistance to a rapidly changing ocean. Comp Biochem Physiol A Mol Integr Physiol 2019; 241:110625. [PMID: 31790807 DOI: 10.1016/j.cbpa.2019.110625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tyler G Evans
- Department of Biological Sciences, California State University East Bay, 25800 Carlos Bee Blvd, Hayward, CA 94542, USA.
| | - Cheryl A Logan
- Department of Marine Science, California State University Monterey Bay, 100 Campus Center, Seaside, CA 93955, USA
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