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Zhou X, Zhang B, Meng Q, Li L. Effects of Graphene Oxide on Endophytic Bacteria Population Characteristics in Plants from Soils Contaminated by Polycyclic Aromatic Hydrocarbons. Molecules 2024; 29:2342. [PMID: 38792204 PMCID: PMC11123924 DOI: 10.3390/molecules29102342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/09/2024] [Accepted: 05/14/2024] [Indexed: 05/26/2024] Open
Abstract
Environmental pollution stands as one of the significant global challenges we face today. Polycyclic aromatic hydrocarbons (PAHs), a class of stubborn organic pollutants, have long been a focal point of bioremediation research. This study aims to explore the impact and mechanisms of graphene oxide (GO) on the phytoremediation effectiveness of PAHs. The results underscore the significant efficacy of GO in accelerating the degradation of PAHs. Additionally, the introduction of GO altered the diversity and community structure of endophytic bacteria within the roots, particularly those genera with potential for PAH degradation. Through LEfSe analysis and correlation studies, we identified specific symbiotic bacteria, such as Mycobacterium, Microbacterium, Flavobacterium, Sphingomonas, Devosia, Bacillus, and Streptomyces, which coexist and interact under the influence of GO, synergistically degrading PAHs. These bacteria may serve as key biological markers in the PAH degradation process. These findings provide new theoretical and practical foundations for the application of nanomaterials in plant-based remediation of polluted soils and showcase the immense potential of plant-microbe interactions in environmental restoration.
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Affiliation(s)
- Xingxing Zhou
- College of Architecture and Environment, Ningxia Institute of Science and Technology, Shizuishan 753000, China;
| | - Bo Zhang
- Key Laboratory of Ministry of Education on Safe Mining of Deep Metal Mines, Northeastern University, Shenyang 110819, China;
| | - Qingzhu Meng
- College of Material Science and Green Technologies, Kazakh-British Technical University, Almaty 050000, Kazakhstan;
| | - Lingmei Li
- College of Life Science, Shenyang Normal University, Shenyang 110034, China
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2
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Xiong Z, Zhang Y, Chen X, Sha A, Xiao W, Luo Y, Peng L, Zou L, Li Q. Impact of Vanadium-Titanium-Magnetite Mining Activities on Endophytic Bacterial Communities and Functions in the Root Systems of Local Plants. Genes (Basel) 2024; 15:526. [PMID: 38790155 PMCID: PMC11121153 DOI: 10.3390/genes15050526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 04/11/2024] [Accepted: 04/20/2024] [Indexed: 05/26/2024] Open
Abstract
This study utilized 16S rRNA high-throughput sequencing technology to analyze the community structure and function of endophytic bacteria within the roots of three plant species in the vanadium-titanium-magnetite (VTM) mining area. The findings indicated that mining activities of VTM led to a notable decrease in both the biodiversity and abundance of endophytic bacteria within the root systems of Eleusine indica and Carex (p < 0.05). Significant reductions were observed in the populations of Nocardioides, concurrently with substantial increments in the populations of Pseudomonas (p < 0.05), indicating that Pseudomonas has a strong adaptability to this environmental stress. In addition, β diversity analysis revealed divergence in the endophytic bacterial communities within the roots of E. indica and Carex from the VTM mining area, which had diverged to adapt to the environmental stress caused by mining activity. Functional enrichment analysis revealed that VTM mining led to an increase in polymyxin resistance, nicotinate degradation I, and glucose degradation (oxidative) (p < 0.05). Interestingly, we found that VTM mining did not notably alter the endophytic bacterial communities or functions in the root systems of Dodonaea viscosa, indicating that this plant can adapt well to environmental stress. This study represents the primary investigation into the influence of VTM mining activities on endophytic bacterial communities and the functions of nearby plant roots, providing further insight into the impact of VTM mining activities on the ecological environment.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Qiang Li
- Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, Sichuan Engineering & Technology Research Center of Coarse Cereal Industrialization, School of Food and Biological Engineering, Chengdu University, Chengdu 610106, China; (Z.X.); (Y.Z.); (X.C.); (A.S.); (W.X.); (Y.L.); (L.P.); (L.Z.)
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3
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Iqbal S, Ummara U, Noreen S, Akhter MS, Jaleel F, Jabeen S, Naz N, Wahid A, Alotaibi MO, Nour MM, Al-Qthanin RN, Aqeel M. Enhancing systematic tolerance in Bermuda grass (Cynodon dactylon L.) through amplified alkB gene expression and bacterial-driven hydrocarbon degradation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:19871-19885. [PMID: 38368297 DOI: 10.1007/s11356-024-32326-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 01/30/2024] [Indexed: 02/19/2024]
Abstract
This study aimed to access the impact of soil polluted with petroleum (5, 10 g petroleum kg-1 soil) on Bermuda grass (Cynodon dactylon L.) with and without applied bacterial inoculants (Arthrobacter oxydans ITRH49 and Pseudomonas sp. MixRI75). Both soil and seed were given bacterial inoculation. The evaluated morphological parameters of Bermuda grass were fresh and dry weight. The results demonstrated that applied bacterial inoculants enhanced 5.4%, 20%, 28% and 6.4%, 21%, and 29% shoot and root fresh/dry weights in Bermuda grass under controlled environment. The biochemical analysis of shoot and root was affected deleteriously by the 10 g petroleum kg-1 soil pollution. Microbial inoculants enhanced the activities of enzymatic (catalase, peroxidase, glutathione reductase, ascorbate peroxidase, superoxide dismutase) and non-enzymatic (ɑ-tocopherols, proline, reduced glutathione, ascorbic acid) antioxidant to mitigate the toxic effects of ROS (H2O2) under hydrocarbon stressed condition. The maximum hydrocarbon degradation (75%) was recorded by Bermuda grass at 5 g petroleum kg-1 soil contamination. Moreover, bacterial persistence and alkane hydroxylase gene (alkB) abundance and expression were observed more in the root interior than in the rhizosphere and shoot interior of Bermuda grass. Subsequently, the microbe used a biological tool to propose that the application of plant growth-promoting bacteria would be the most favorable choice in petroleum hydrocarbon polluted soil to conquer the abiotic stress in plants and the effective removal of polyaromatic hydrocarbons in polluted soil.
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Affiliation(s)
- Sehrish Iqbal
- Department of Environmental Science, The Women University Multan, Multan, Pakistan
| | - Ume Ummara
- Department of Botany, The Islamia University of Bahawalpur, Rahim Yar Khan Campus, Bahawalpur, Pakistan
| | - Sibgha Noreen
- Institute of Botany, Bahauddin Zakariya University, Multan, Pakistan
| | | | - Farrukh Jaleel
- Department of Chemistry, The Islamia University of Bahawalpur, Rahim Yar Khan Campus, Bahawalpur, Pakistan
| | - Shazia Jabeen
- Department of Environmental Science, The Women University Multan, Multan, Pakistan
| | - Nargis Naz
- Department of Botany, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | - Abdul Wahid
- Department of Environmental Science, Bahauddin Zakariya University, Multan, Pakistan
| | - Modhi O Alotaibi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, 11671, Riyadh, Saudi Arabia
| | - Mudawi M Nour
- Nurseries Department, Habitat Regeneration and Landscaping, Wildlife and Natural Heritage, Royal Commission for AlUla, Saudi Arabia
| | - Rahmah N Al-Qthanin
- Prince Sultan Bin-Abdul-Aziz Center for Environment and Tourism Studies and Researches, King Khalid University, P.O. Box 960, 61421, Abha, Saudi Arabia
- Biology Department, College of Sciences, King Khalid University, Abha, Saudi Arabia
| | - Muhammad Aqeel
- State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystem, College of Ecology, Lanzhou University, Lanzhou, 730000, Gansu, China.
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4
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Zhao J, Yu X, Zhang C, Hou L, Wu N, Zhang W, Wang Y, Yao B, Delaplace P, Tian J. Harnessing microbial interactions with rice: Strategies for abiotic stress alleviation in the face of environmental challenges and climate change. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168847. [PMID: 38036127 DOI: 10.1016/j.scitotenv.2023.168847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 11/21/2023] [Accepted: 11/22/2023] [Indexed: 12/02/2023]
Abstract
Rice, which feeds more than half of the world's population, confronts significant challenges due to environmental and climatic changes. Abiotic stressors such as extreme temperatures, drought, heavy metals, organic pollutants, and salinity disrupt its cellular balance, impair photosynthetic efficiency, and degrade grain quality. Beneficial microorganisms from rice and soil microbiomes have emerged as crucial in enhancing rice's tolerance to these stresses. This review delves into the multifaceted impacts of these abiotic stressors on rice growth, exploring the origins of the interacting microorganisms and the intricate dynamics between rice-associated and soil microbiomes. We highlight their synergistic roles in mitigating rice's abiotic stresses and outline rice's strategies for recruiting these microorganisms under various environmental conditions, including the development of techniques to maximize their benefits. Through an in-depth analysis, we shed light on the multifarious mechanisms through which microorganisms fortify rice resilience, such as modulation of antioxidant enzymes, enhanced nutrient uptake, plant hormone adjustments, exopolysaccharide secretion, and strategic gene expression regulation, emphasizing the objective of leveraging microorganisms to boost rice's stress tolerance. The review also recognizes the growing prominence of microbial inoculants in modern rice cultivation for their eco-friendliness and sustainability. We discuss ongoing efforts to optimize these inoculants, providing insights into the rigorous processes involved in their formulation and strategic deployment. In conclusion, this review emphasizes the importance of microbial interventions in bolstering rice agriculture and ensuring its resilience in the face of rising environmental challenges.
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Affiliation(s)
- Jintong Zhao
- Gembloux Agro-Bio Tech, University of Liege, TERRA - Teaching & Research Center, Plant Sciences, 5030 Gembloux, Belgium; Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Xiaoxia Yu
- School of Water Resources & Environmental Engineering, East China University of Technology, Nanchang, Jiangxi 330000, China
| | - Chunyi Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Sanya Institute, Hainan, Academy of Agricultural Sciences, Sanya 572000, China
| | - Ligang Hou
- Rice Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling, Jilin 136100, China
| | - Ningfeng Wu
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Wei Zhang
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Yuan Wang
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Bin Yao
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Pierre Delaplace
- Gembloux Agro-Bio Tech, University of Liege, TERRA - Teaching & Research Center, Plant Sciences, 5030 Gembloux, Belgium
| | - Jian Tian
- Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China; Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
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Muneer MA, Chen X, Wang H, Munir MZ, Afridi MS, Yan X, Ji B, Li W, Wu L, Zheng C. Unraveling two decades of phyllosphere endophytes: tracing research trends and insights through visualized knowledge maps, with emphasis on microbial interactions as emerging frontiers. STRESS BIOLOGY 2024; 4:12. [PMID: 38319560 PMCID: PMC10847081 DOI: 10.1007/s44154-024-00148-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Accepted: 01/07/2024] [Indexed: 02/07/2024]
Abstract
Phyllosphere endophytes play a critical role in a myriad of biological functions, such as maintaining plant health and overall fitness. They play a determinative role in crop yield and quality by regulating vital processes, such as leaf functionality and longevity, seed mass, apical growth, flowering, and fruit development. This study conducted a comprehensive bibliometric analysis aiming to review the prevailing research trajectories in phyllosphere endophytes and harness both primary areas of interest and emerging challenges. A total of 156 research articles on phyllosphere endophytes, published between 2002 and 2022, were retrieved from the Web of Science Core Collection (WoSCC). A systematic analysis was conducted using CiteSpace to visualize the evolution of publication frequency, the collaboration network, the co-citation network, and keywords co-occurrence. The findings indicated that initially, there were few publications on the topic of phyllosphere endophytes. However, from 2011 onwards, there was a notable increase in the number of publications on phyllosphere endophytes, gaining worldwide attention. Among authors, Arnold, A Elizabeth is widely recognized as a leading author in this research area. In terms of countries, the USA and China hold the highest rankings. As for institutional ranking, the University of Arizona is the most prevalent and leading institute in this particular subject. Collaborative efforts among the authors and institutions tend to be confined to small groups, and a large-scale collaborative network needs to be established. This study identified the influential journals, literature, and hot research topics. These findings also highlight the interconnected nature of key themes, e.g., phyllosphere endophyte research revolves around the four pillars: diversity, fungal endophytes, growth, and endophytic fungi. This study provides an in-depth perspective on phyllosphere endophytes studies, revealing the identification of biodiversity and microbial interaction of phyllosphere endophytes as the principal research frontiers. These analytical findings not only elucidate the recent trajectory of phyllosphere endophyte research but also provide invaluable insights for similar studies and their potential applications on a global scale.
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Affiliation(s)
- Muhammad Atif Muneer
- International Magnesium Institute, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Xiaohui Chen
- Anhui Province Key Lab of Farmland Ecological Conservation and Pollution Prevention; Anhui Province Engineering and Technology Research Center of Intelligent Manufacture and Efficient Utilization of Green Phosphorus Fertilizer, College of Resources and Environment, Anhui Agricultural University, Hefei, 230036, China
| | - Hexin Wang
- Anhui Province Key Lab of Farmland Ecological Conservation and Pollution Prevention; Anhui Province Engineering and Technology Research Center of Intelligent Manufacture and Efficient Utilization of Green Phosphorus Fertilizer, College of Resources and Environment, Anhui Agricultural University, Hefei, 230036, China
| | - Muhammad Zeeshan Munir
- School of Environment and Energy, Peking University Shenzhen Graduate School, 2199, Lishui Rd, Shenzhen, 518055, China
| | - Muhammad Siddique Afridi
- Department of Plant Pathology, Federal University of Lavras (UFLA), Lavras, MG, CEP 37200-900, Brazil
| | - Xiaojun Yan
- International Magnesium Institute, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Baoming Ji
- College of Grassland Science, Beijing Forestry University, Beijing, China
| | - Wenqing Li
- Fujian Institute of Tobacco Sciences, Fuzhou, 350013, China
| | - Liangquan Wu
- International Magnesium Institute, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Chaoyuan Zheng
- International Magnesium Institute, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
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Naqvi SNH, Bibi I, Niazi NK, Tahseen R, Al-Misned F, Shahid M, Naqvi SA, Ashraf W, Shabir G, Iqbal S, Ali F, Afzal M. Exploring the potential of bacterial-augmented floating treatment wetlands for the remediation of detergent-contaminated water. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2023; 26:882-893. [PMID: 37933838 DOI: 10.1080/15226514.2023.2275725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2023]
Abstract
Due to industrialization and urbanization, the use of detergents inadvertently led to contamination of aquatic environments, thus posing potential threat to aquatic organisms and human health. One of the main components of detergents is linear alkylbenzene sulfonate (LAS), which can cause toxic effects on living organisms, particularly aquatic life in the environment. In this study, floating treatment wetlands (FTWs) mesocosms were developed and augmented with LAS-degrading bacteria. The plant species, Brachiaria mutica (Para grass), was vegetated to establish FTWs and bacterial consortium (1:1:1:1) of Pseudomonas aeruginosa strain PJRS20, Bacillus sp. BRRH60, Acinetobacter sp. strain CYRH21, and Burkholderia phytofirmans Ps.JN was augmented (free or immobilized) in these mesocosms. Results revealed that the FTWs removed LAS from the contaminated water and their augmentation with bacteria slightly increased LAS removal during course of the experiment. Maximum reduction in LAS concentration (94%), chemical oxygen demand (91%), biochemical oxygen demand (93%), and total organic carbon (91%) was observed in the contaminated water having FTWs augmented with bacterial consortium immobilized on polystyrene sheet. This study highlights that the FTWs supported with immobilized bacteria on polystyrene sheets can provide an eco-friendly and sustainable solution for the remediation of LAS-bearing water, especially for developing countries like Pakistan.
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Affiliation(s)
- Syed Najaf Hasan Naqvi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Irshad Bibi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Razia Tahseen
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Fahad Al-Misned
- Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS University Islamabad, Vehari Campus, Vehari, Pakistan
| | | | | | - Ghulam Shabir
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Samina Iqbal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
| | - Fawad Ali
- Centre for Planetary Health and Food Security, Griffith University, Nathan Campus (4111), Brisbane, QLD, Australia
- Queensland Department of Agriculture and Fisheries, Mareeba (4880), QLD, Australia
| | - Muhammad Afzal
- Soil and Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering College, Pakistan Institute of Engineering and Applied Sciences (NIBGE-C PIEAS), Faisalabad, Pakistan
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Lovecká P, Kroneislová G, Novotná Z, Röderová J, Demnerová K. Plant Growth-Promoting Endophytic Bacteria Isolated from Miscanthus giganteus and Their Antifungal Activity. Microorganisms 2023; 11:2710. [PMID: 38004722 PMCID: PMC10672898 DOI: 10.3390/microorganisms11112710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/24/2023] [Accepted: 11/02/2023] [Indexed: 11/26/2023] Open
Abstract
Modern technologies can satisfy human needs only with the use of large quantities of fertilizers and pesticides that are harmful to the environment. For this reason, it is possible to develop new technologies for sustainable agriculture. The process could be carried out by using endophytic microorganisms with a (possible) positive effect on plant vitality. Bacterial endophytes have been reported as plant growth promoters in several kinds of plants under normal and stressful conditions. In this study, isolates of bacterial endophytes from the roots and leaves of Miscanthus giganteus plants were tested for the presence of plant growth-promoting properties and their ability to inhibit pathogens of fungal origin. Selected bacterial isolates were able to solubilize inorganic phosphorus, fix nitrogen, and produce phytohormones, 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase, and siderophore. Leaf bacterial isolate Pantoea ananat is 50 OL 2 had high production of siderophores (zone ≥ 5 mm), and limited phytohormone production, and was the only one to show ACC deaminase activity. The root bacterial isolate of Pseudomonas libanensis 5 OK 7A showed the best results in phytohormone production (N6-(Δ2-isopentenyl)adenine and indole-3-acetic acid, 11.7 and 12.6 ng·mL-1, respectively). Four fungal cultures-Fusarium sporotrichioides DBM 4330, Sclerotinia sclerotiorum SS-1, Botrytis cinerea DS 90 and Sphaerodes fimicola DS 93-were used to test the antifungal activity of selected bacterial isolates. These fungal cultures represent pathogenic families, especially for crops. All selected root endophyte isolates inhibited the pathogenic growth of all tested fungi with inhibition percentages ranging from 30 to 60%. Antifungal activity was also tested in two forms of immobilization of selected bacterial isolates: one in agar and the other on dextrin-coated cellulose carriers. These results demonstrated that the endophytic Pseudomonas sp. could be used as biofertilizers for crops.
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Affiliation(s)
- Petra Lovecká
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic
| | - Gabriela Kroneislová
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic
| | - Zuzana Novotná
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic
| | - Jana Röderová
- Institute of Microbiology of the CAS, Vídeňská 1083, 142 20 Prague, Czech Republic
| | - Kateřina Demnerová
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, University of Chemistry and Technology Prague, Technická 3, 166 28 Prague, Czech Republic
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Fang LR, Yang XC, Wu CY, Sun K, Megharaj M, He W. Endophytic Bacillus sp. R1 and Its Roles in Assisting Phytoremediation and Alleviating the Toxicity of Aluminum Combined Phenanthrene Contaminations in Brassica napus. Curr Microbiol 2023; 80:397. [PMID: 37907801 DOI: 10.1007/s00284-023-03493-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Accepted: 09/21/2023] [Indexed: 11/02/2023]
Abstract
The release of organic and inorganic contaminants into soil from industry, agriculture, and urbanization has become a major issue of international concern, particularly the heavy metals such as aluminum (Al) and the chemical phenanthrene (PHE). Due to their potential toxicity and non-biodegrade in the environment, efficient remediation methods are urgently needed. Recently, research has comprehensively discussed using plants and their endophytes in bioremediation efforts. Endophytic Bacillus sp. R1, isolated from Brassica napus permanently contaminated with Al and PHE, has growth-promoting properties and can efficiently detoxify these contaminants. The pot experiment indicated that compared to the Al combined PHE contaminated soil alone treatment, the R1 treatment led to increased Al accumulation in canola roots across different levels of PHE, Al, and combined PHE and Al contamination. However, Al accumulation in canola shoots and seeds remained unchanged for all treatments. Moreover, PHE in canola roots and shoots was decreased by R1 inoculation and thereby reducing 26.12-60.61% PHE translocated into canola seeds. Additionally, R1 inoculation significantly increased the proportion of extractable Al and, decreased the proportion of acid-soluble inorganic Al and humic-acid Al, but did not affect the concentration of organically complexed Al. In summary, endophyte R1 can degrade PHE, improve canola roots' Al uptake by increasing soil available Al, and scavenge the reactive oxygen species through production of antioxidant enzymes to help alleviate the toxicity of canola co-contaminated with aluminum and phenanthrene.
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Affiliation(s)
- Li-Rong Fang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Wenyuan Street, NanjingJiangsu Province, 210023, China
| | - Xue-Cheng Yang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Wenyuan Street, NanjingJiangsu Province, 210023, China
| | - Chun-Ya Wu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Wenyuan Street, NanjingJiangsu Province, 210023, China
| | - Kai Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Wenyuan Street, NanjingJiangsu Province, 210023, China
| | - Mallavarapu Megharaj
- Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle (UoN), Callaghan, NSW, 2308, Australia
| | - Wei He
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Wenyuan Street, NanjingJiangsu Province, 210023, China.
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Gibson E, Zimmerman NB. Urban biogeography of fungal endophytes across San Francisco. PeerJ 2023; 11:e15454. [PMID: 37547726 PMCID: PMC10399560 DOI: 10.7717/peerj.15454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 05/03/2023] [Indexed: 08/08/2023] Open
Abstract
In natural and agricultural systems, the plant microbiome-the microbial organisms associated with plant tissues and rhizosphere soils-has been shown to have important effects on host physiology and ecology, yet we know little about how these plant-microbe relationships play out in urban environments. Here we characterize the composition of fungal communities associated with living leaves of one of the most common sidewalk trees in the city of San Francisco, California. We focus our efforts on endophytic fungi (asymptomatic microfungi that live inside healthy leaves), which have been shown in other systems to have large ecological effects on the health of their plant hosts. Specifically, we characterized the foliar fungal microbiome of Metrosideros excelsa (Myrtaceae) trees growing in a variety of urban environmental conditions. We used high-throughput culturing, PCR, and Sanger sequencing of the internal transcribed spacer nuclear ribosomal DNA (ITS nrDNA) region to quantify the composition and structure of fungal communities growing within healthy leaves of 30 M. excelsa trees from six distinct sites, which were selected to capture the range of environmental conditions found within city limits. Sequencing resulted in 854 high-quality ITS sequences. These sequences clustered into 85 Operational Taxonomic Units (97% OTUs). We found that these communities encompass relatively high alpha (within) and beta (between-site) diversity. Because the communities are all from the same host tree species, and located in relatively close geographical proximity to one another, these analyses suggest that urban environmental factors such as heat islands or differences in vegetation or traffic density (and associated air quality) may potentially be influencing the composition of these fungal communities. These biogeographic patterns provide evidence that plant microbiomes in urban environments can be as dynamic and complex as their natural counterparts. As human populations continue to transition out of rural areas and into cities, understanding the factors that shape environmental microbial communities in urban ecosystems stands to become increasingly important.
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Affiliation(s)
- Emma Gibson
- Department of Biology, University of San Francisco, San Francisco, CA, United States of America
| | - Naupaka B. Zimmerman
- Department of Biology, University of San Francisco, San Francisco, CA, United States of America
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Fan D, Schwinghamer T, Liu S, Xia O, Ge C, Chen Q, Smith DL. Characterization of endophytic bacteriome diversity and associated beneficial bacteria inhabiting a macrophyte Eichhornia crassipes. FRONTIERS IN PLANT SCIENCE 2023; 14:1176648. [PMID: 37404529 PMCID: PMC10316030 DOI: 10.3389/fpls.2023.1176648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 05/24/2023] [Indexed: 07/06/2023]
Abstract
Introduction The endosphere of a plant is an interface containing a thriving community of endobacteria that can affect plant growth and potential for bioremediation. Eichhornia crassipes is an aquatic macrophyte, adapted to estuarine and freshwater ecosystems, which harbors a diverse bacterial community. Despite this, we currently lack a predictive understanding of how E. crassipes taxonomically structure the endobacterial community assemblies across distinct habitats (root, stem, and leaf). Methods In the present study, we assessed the endophytic bacteriome from different compartments using 16S rRNA gene sequencing analysis and verified the in vitro plant beneficial potential of isolated bacterial endophytes of E. crassipes. Results and discussion Plant compartments displayed a significant impact on the endobacterial community structures. Stem and leaf tissues were more selective, and the community exhibited a lower richness and diversity than root tissue. The taxonomic analysis of operational taxonomic units (OTUs) showed that the major phyla belonged to Proteobacteria and Actinobacteriota (> 80% in total). The most abundant genera in the sampled endosphere was Delftia in both stem and leaf samples. Members of the family Rhizobiaceae, such as in both stem and leaf samples. Members of the family Rhizobiaceae, such as Allorhizobium- Neorhizobium-Pararhizobium-Rhizobium were mainly associated with leaf tissue, whereas the genera Nannocystis and Nitrospira from the families Nannocystaceae and Nitrospiraceae, respectively, were statistically significantly associated with root tissue. Piscinibacter and Steroidobacter were putative keystone taxa of stem tissue. Most of the endophytic bacteria isolated from E. crassipes showed in vitro plant beneficial effects known to stimulate plant growth and induce plant resistance to stresses. This study provides new insights into the distribution and interaction of endobacteria across different compartments of E. crassipes Future study of endobacterial communities, using both culture-dependent and -independent techniques, will explore the mechanisms underlying the wide-spread adaptability of E. crassipesto various ecosystems and contribute to the development of efficient bacterial consortia for bioremediation and plant growth promotion.
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Affiliation(s)
- Di Fan
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Timothy Schwinghamer
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge, AB, Canada
| | - Shuaitong Liu
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Ouyuan Xia
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Chunmei Ge
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Qun Chen
- School of Biology, Food and Environment, Hefei University, Hefei, China
| | - Donald L. Smith
- Department of Plant Science, McGill University, Sainte-Anne-de-Bellevue, QC, Canada
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11
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Danyal Y, Mahmood K, Ullah S, Rahim A, Raheem G, Khan AH, Ullah A. Phytoremediation of industrial effluents assisted by plant growth promoting bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:5296-5311. [PMID: 36402881 DOI: 10.1007/s11356-022-23967-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/29/2022] [Indexed: 06/16/2023]
Abstract
Industrialization plays a crucial role in the economic development of a country; however, the effluents produced as a byproduct generally contain toxic substances which are detrimental to living organisms. In this regard, it is essential to treat these toxic effluents before exposing them to the natural environment by selecting the most appropriate method accordingly. Several techniques are used to remediate industrial effluents including physical, chemical, and biological. Although some physical and chemical remediation technologies are of substantially important in remediation of industrial effluents, however, these technologies are either expensive to be applied by developing countries or not suitable for remediation of all kinds of effluents. In contrast, biological remediation is cost effective, nature friendly, and easy to use for almost all kinds of effluents. Among biological remediation strategies, phytoremediation is considered to be the most suitable method for remediation of industrial effluents; however, the phytoremediation process is slow, takes time in application and some effluents even affect plants growth and development. Alternately, plant microbe interactions could be a winning partner to remediate industrial effluents more efficiently. Among the microbes, plant growth promoting bacteria (PGPB) not only improve plant growth but also help in degradation, sequestration, volatilization, solubilization, mobilization, and bioleaching of industrial effluents which subsequently improve the phytoremediation process. The current study discusses the role of PGPB in enhancing the phytoremediation processes of industrial effluents.
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Affiliation(s)
- Youshaa Danyal
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Kainat Mahmood
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Shariat Ullah
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Abdur Rahim
- Department of Zoology, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Gul Raheem
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Aamir Hamid Khan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Abid Ullah
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan.
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12
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Xiang L, Harindintwali JD, Wang F, Redmile-Gordon M, Chang SX, Fu Y, He C, Muhoza B, Brahushi F, Bolan N, Jiang X, Ok YS, Rinklebe J, Schaeffer A, Zhu YG, Tiedje JM, Xing B. Integrating Biochar, Bacteria, and Plants for Sustainable Remediation of Soils Contaminated with Organic Pollutants. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:16546-16566. [PMID: 36301703 PMCID: PMC9730858 DOI: 10.1021/acs.est.2c02976] [Citation(s) in RCA: 63] [Impact Index Per Article: 31.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
The contamination of soil with organic pollutants has been accelerated by agricultural and industrial development and poses a major threat to global ecosystems and human health. Various chemical and physical techniques have been developed to remediate soils contaminated with organic pollutants, but challenges related to cost, efficacy, and toxic byproducts often limit their sustainability. Fortunately, phytoremediation, achieved through the use of plants and associated microbiomes, has shown great promise for tackling environmental pollution; this technology has been tested both in the laboratory and in the field. Plant-microbe interactions further promote the efficacy of phytoremediation, with plant growth-promoting bacteria (PGPB) often used to assist the remediation of organic pollutants. However, the efficiency of microbe-assisted phytoremediation can be impeded by (i) high concentrations of secondary toxins, (ii) the absence of a suitable sink for these toxins, (iii) nutrient limitations, (iv) the lack of continued release of microbial inocula, and (v) the lack of shelter or porous habitats for planktonic organisms. In this regard, biochar affords unparalleled positive attributes that make it a suitable bacterial carrier and soil health enhancer. We propose that several barriers can be overcome by integrating plants, PGPB, and biochar for the remediation of organic pollutants in soil. Here, we explore the mechanisms by which biochar and PGPB can assist plants in the remediation of organic pollutants in soils, and thereby improve soil health. We analyze the cost-effectiveness, feasibility, life cycle, and practicality of this integration for sustainable restoration and management of soil.
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Affiliation(s)
- Leilei Xiang
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Jean Damascene Harindintwali
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Fang Wang
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
- Institute
for Environmental Research, RWTH Aachen
University, 52074 Aachen, Germany
- or
| | - Marc Redmile-Gordon
- Department
of Environmental Horticulture, Royal Horticultural
Society, Wisley, Surrey GU23 6QB, U.K.
| | - Scott X. Chang
- Department
of Renewable Resources, University of Alberta, Edmonton, Alberta T6G 2R3, Canada
| | - Yuhao Fu
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Chao He
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- Zhejiang University, Hangzhou 310058, China
| | - Bertrand Muhoza
- College
of Food Science, Northeast Agricultural
University, Harbin, Heilongjiang 150030, China
| | - Ferdi Brahushi
- Department
of Agroenvironment and Ecology, Agricultural
University of Tirana, Tirana 1029, Albania
| | - Nanthi Bolan
- School of
Agriculture and Environment, The UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia 6001, Australia
| | - Xin Jiang
- CAS
Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- University
of Chinese Academy of Sciences, Beijing 100049, China
| | - Yong Sik Ok
- Korea
Biochar Research Center, APRU Sustainable Waste Management Program
& Division of Environmental Science and Ecological Engineering, Korea University, Seoul 02841, Republic
of Korea
| | - Jörg Rinklebe
- Department
of Soil and Groundwater Management, Bergische
Universität, 42285 Wuppertal, Germany
| | - Andreas Schaeffer
- Institute
for Environmental Research, RWTH Aachen
University, 52074 Aachen, Germany
- School
of the Environment, State Key Laboratory of Pollution Control and
Resource Reuse, Nanjing University, 210023 Nanjing, China
- Key
Laboratory of the Three Gorges Reservoir Region’s Eco-Environment, Chongqing University, 400045 Chongqing, China
| | - Yong-guan Zhu
- University
of Chinese Academy of Sciences, Beijing 100049, China
- Key
Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
- State
Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of
Sciences, Beijing 100085, China
| | - James M. Tiedje
- Center
for Microbial Ecology, Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, Michigan 48824, United States
| | - Baoshan Xing
- Stockbridge
School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
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13
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Wang Y, Chen X, Li H, Ma Y, Zeng D, Du L, Jin D. Characterization and genomic analysis of a bensulfuron methyl-degrading endophytic bacterium Proteus sp. CD3 isolated from barnyard grass (Echinochloa crus-galli). Front Microbiol 2022; 13:1032001. [PMID: 36353460 PMCID: PMC9638167 DOI: 10.3389/fmicb.2022.1032001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 10/06/2022] [Indexed: 12/04/2022] Open
Abstract
Bensulfuron methyl (BSM) is a widely used sulfonylurea herbicide in agriculture. However, the large-scale BSM application causes severe environmental problems. Biodegradation is an important way to remove BSM residue. In this study, an endophytic bacterium strain CD3, newly isolated from barnyard grass (Echinochloa crus-galli), could effectively degrade BSM in mineral salt medium. The strain CD3 was identified as Proteus sp. based on the phenotypic features, physiological biochemical characteristics, and 16S rRNA gene sequence. The suitable conditions for BSM degradation by this strain were 20–40°C, pH 6–8, the initial concertation of 12.5–200 mg L−1 with 10 g L−1 glucose as additional carbon source. The endophyte was capable of degrading above 98% BSM within 7 d under the optimal degrading conditions. Furthermore, strain CD3 could also effectively degrade other sulfonylurea herbicides including nicosulfuron, halosulfuron methyl, pyrazosulfuron, and ethoxysulfuron. Extracellular enzyme played a critical role on the BSM degradation by strain CD3. Two degrading metabolites were detected and identified by using liquid chromatography–mass spectrometry (LC–MS). The biochemical degradation pathways of BSM by this endophyte were proposed. The genomic analysis of strain CD3 revealed the presence of putative hydrolase or esterase genes involved in BSM degradation, suggesting that a novel degradation enzyme for BSM was present in this BSM-degrading Proteus sp. CD3. The results of this research suggested that strain CD3 may have potential for using in the bioremediation of BSM-contaminated environment.
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Affiliation(s)
- Yanhui Wang
- Institute of Pesticide and Environmental Toxicology, Guangxi University, Nanning, China
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Plant Protection Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Xianyan Chen
- Institute of Pesticide and Environmental Toxicology, Guangxi University, Nanning, China
| | - Honghong Li
- Institute of Pesticide and Environmental Toxicology, Guangxi University, Nanning, China
| | - Yonglin Ma
- Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests, Plant Protection Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China
| | - Dongqiang Zeng
- Institute of Pesticide and Environmental Toxicology, Guangxi University, Nanning, China
| | - Liangwei Du
- College of Chemistry and Chemical Engineering, Guangxi University, Nanning, China
- *Correspondence: Liangwei Du,
| | - Decai Jin
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
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14
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Man B, Xiang X, Zhang J, Cheng G, Zhang C, Luo Y, Qin Y. Keystone Taxa and Predictive Functional Analysis of Sphagnum palustre Tank Microbiomes in Erxianyan Peatland, Central China. BIOLOGY 2022; 11:1436. [PMID: 36290340 PMCID: PMC9598613 DOI: 10.3390/biology11101436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/23/2022] [Accepted: 09/28/2022] [Indexed: 06/16/2023]
Abstract
Sphagnum is a fundamental ecosystem of engineers, including more than 300 species around the world. These species host diverse microbes, either endosymbiotic or ectosymbiotic, and are key to carbon sequestration in peatland ecosystems. However, the linkages between different types of Sphagnum and the diversity and ecological functions of Sphagnum-associated microbiomes are poorly known, and so are their joint responses to ecological functions. Here, we systematically investigated endophytes in Sphagnum palustre via next-generation sequencing (NGS) techniques in the Erxianyan peatland, central China. The total bacterial microbiome was classified into 38 phyla and 55 classes, 122 orders and 490 genera. The top 8 phyla of Proteobacteria (33.69%), Firmicutes (11.94%), Bacteroidetes (9.42%), Actinobacteria (6.53%), Planctomycetes (6.37%), Gemmatimonadetes (3.05%), Acidobacteria (5.59%) and Cyanobacteria (1.71%) occupied 78.31% of total OTUs. The core microbiome of S. palustre was mainly distributed mainly in 7 phyla, 9 classes, 15 orders, 22 families and 43 known genera. There were many differences in core microbiomes compared to those in the common higher plants. We further demonstrate that the abundant functional groups have a substantial potential for nitrogen fixation, carbon cycle, nitrate metabolism, sulfate respiration and chitinolysis. These results indicate that potential ecological function of Sphagnum palustre in peatlands is partially rooted in its microbiomes, and that incorporating into functional groups of Sphagnum-associated microbiomes can promote mechanistic understanding of Sphagnum ecology in subalpine peatlands.
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Affiliation(s)
- Baiying Man
- College of Life Science, Shangrao Normal University, Shangrao 334001, China
| | - Xing Xiang
- College of Life Science, Shangrao Normal University, Shangrao 334001, China
| | - Junzhong Zhang
- Key Laboratory of Forest Disaster Warning and Control in Yunnan Higher Education Institutions, South West Forestry University, Kunming 650224, China
| | - Gang Cheng
- College of Life Science, Shangrao Normal University, Shangrao 334001, China
| | - Chao Zhang
- College of Life Science, Shangrao Normal University, Shangrao 334001, China
| | - Yang Luo
- College of Life Science, Shangrao Normal University, Shangrao 334001, China
| | - Yangmin Qin
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
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15
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Alami NH, Hamzah A, Tangahu BV, Warmadewanti I, Bachtiar Krishna Putra A, Purnomo AS, Danilyan E, Putri HM, Aqila CN, Dewi AAN, Pratiwi A, Putri SK, Luqman A. Microbiome profile of soil and rhizosphere plants growing in traditional oil mining land in Wonocolo, Bojonegoro, Indonesia. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:697-705. [PMID: 35867913 DOI: 10.1080/15226514.2022.2103094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Traditional oil mining poses negative effects on the environment through pollution with crude oil. One of the traditional mining sites in Wonocolo, Bojonegoro, Indonesia was reported to contaminate the surrounding area with a high level of crude oil. Therefore, this study aims to examine the microbiome profiles of contaminated soil and the rhizosphere of naturalized plants growing at the sites. It was conducted in Wonocolo, Bojonegoro to obtain an insight into the possible remediation efforts of using indigenous hydrocarbon-degrading bacteria and naturalized plants as in situ remediation agents. The results showed that the soil located close to the oil well-contained a high level of crude oil at 24.8%, and exhibited a distinct microbiome profile compared to those located further which had lower crude oil contamination of 14.15, 10.89, and 4.9%. Soil with the highest level of crude oil contamination had a comparatively higher relative abundance of assA, an anaerobic alkene-degrading gene. Meanwhile, the rhizosphere of the two naturalized plants, Muntingia calabura, and Pennisetum purpureum, exhibited indifferent microbiome profiles compared to the soil. They were found to contain less abundant hydrocarbon-degrading genes, such as C230, PAH-RHD-GP, nahAc, assA, and alkB suggesting that these naturalized plants might not be a suitable tool for in-situ remediation.
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Affiliation(s)
- Nur Hidayatul Alami
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Afan Hamzah
- Industrial Chemical Engineering Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Bieby Voijant Tangahu
- Environmental Engineering Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Idaa Warmadewanti
- Environmental Engineering Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | | | - Adi Setyo Purnomo
- Chemistry Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Edo Danilyan
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Hellen Melati Putri
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Citra Nesa Aqila
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Aulia An Nisaa Dewi
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | - Ayudia Pratiwi
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
| | | | - Arif Luqman
- Biology Department, Institut Teknologi Sepuluh Nopember, Surabaya, Indonesia
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16
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Morales-Guzmán G, Ferrera-Cerrato R, Rivera-Cruz MDC, Torres-Bustillos LG, Mendoza-López MR, Esquivel-Cote R, Alarcón A. Phytoremediation of soil contaminated with weathered petroleum hydrocarbons by applying mineral fertilization, an anionic surfactant, or hydrocarbonoclastic bacteria. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:329-338. [PMID: 35704711 DOI: 10.1080/15226514.2022.2083577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
This study evaluated the effect of the application of mineral fertilization (F), the anionic surfactant Triton X-100 (TX100), or the inoculation with a hydrocarbooclastic bacterial consortium (BCons) on the growth of Clitoria ternatea during the phytoremediation of a Gleysol contaminated with weathered petroleum hydrocarbons (39,000 mg kg-1 WPH) collected from La Venta, Tabasco (Mexico). The experiment consisted of a completely randomized design with seven treatments and four replications each under greenhouse conditions. The application of F (biostimulation) increased plant growth and biomass production; in contrast, TX100 only favored root biomass (11%) but significantly favored WPH degradation. Bioaugmentation with BCons did not show significant effects on plant growth. Nevertheless, the combination of biostimulation with bioaugmentation (BCons + F, BCons + TX100, and BCons + F+TX100) enhanced plant growth, hydrocarbonoclastic bacteria population, and WPH degradation when compared to treatments with the single application of bioaugmentation (BCons) or biostimulation (F).
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Affiliation(s)
- Gilberto Morales-Guzmán
- Posgrado de Edafología, Colegio de Postgraduados, Montecillo, Texcoco, Estado de México, Mexico
| | - Ronald Ferrera-Cerrato
- Posgrado de Edafología, Colegio de Postgraduados, Montecillo, Texcoco, Estado de México, Mexico
| | - María Del Carmen Rivera-Cruz
- Posgrado en Producción Agroalimentaria en el Trópico, Colegio de Postgraduados, Periférico Carlos A, Cárdenas, Tabasco, Mexico
| | - Luis Gilberto Torres-Bustillos
- Unidad Profesional Interdisciplinaria de Biotecnología, Instituto Politécnico Nacional (UPIBI-IPN), Ciudad de Mexico, Mexico
| | - Ma Remedios Mendoza-López
- Unidad de Servicios de Apoyo en Resolución Analítica. Universidad Veracruzana, Dr. Luis Castelazo Ayala S/N, Col. Industrial-Animas, Xalapa, Veracruz, Mexico
| | - Rosalba Esquivel-Cote
- Posgrado de Edafología, Colegio de Postgraduados, Montecillo, Texcoco, Estado de México, Mexico
| | - Alejandro Alarcón
- Posgrado de Edafología, Colegio de Postgraduados, Montecillo, Texcoco, Estado de México, Mexico
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Zhang M, Li Y, Mu Q, Feng F, Yu X, Ge J, Zhang Y, Nie J. Effects of chlorpyrifos on the metabolic profiling of Bacillus megaterium strain RRB. CHEMOSPHERE 2022; 297:134189. [PMID: 35248589 DOI: 10.1016/j.chemosphere.2022.134189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 02/12/2022] [Accepted: 03/01/2022] [Indexed: 06/14/2023]
Abstract
Many microorganisms have been reported to degrade organic pollutants in the environment and plants, however, the specific information about the effect of organic pollutants on the metabolism of microorganisms is poorly investigated. In the present study, the effect of the pesticide chlorpyrifos on the metabolic profiling of Bacillus megaterium strain RRB was investigated using metabolomics. Our data show that chlorpyrifos acting as an energy source was readily concentrated in the strain RRB from the culture medium. During early cultivation, the shift in energy sources from tryptic soy broth to chlorpyrifos may temporarily cause the strain RRB to enter the starvation stage, where some synthesis-related amino acids and intermediates in the pathways of TCA cycle and pyridoxine metabolism were decreased. The increase of nucleotides and lysine may help the strain RRB cope with the starvation stage. During later cultivation, many metabolites including organic acids, nucleosides and sugar phosphates were gradually accumulated, which indicates that chlorpyrifos could be utilized by the stain RRB to generate metabolites bacteria needed. In addition, arginine acting as a nitrogen-storage amino acid was gradually decreased with later cultivation, suggesting that chlorpyrifos could not provide enough nitrogen for bacteria.
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Affiliation(s)
- Mingxia Zhang
- College of Chemistry and Bioengineering, Guilin University of Technology, Guilin, 541004, China; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Yong Li
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China; School of Food and Biological Engineering, Jiangsu University, 301 Zhenjiang City University Road, Zhenjiang, 212001, China.
| | - Qi'e Mu
- College of Chemistry and Bioengineering, Guilin University of Technology, Guilin, 541004, China; Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Fayun Feng
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Xiangyang Yu
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Jing Ge
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing, 210014, China
| | - Yun Zhang
- College of Chemistry and Bioengineering, Guilin University of Technology, Guilin, 541004, China
| | - Jinfang Nie
- College of Chemistry and Bioengineering, Guilin University of Technology, Guilin, 541004, China.
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18
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Lalinská-Voleková B, Majerová H, Kautmanová I, Brachtýr O, Szabóová D, Arendt D, Brčeková J, Šottník P. Hydrous ferric oxides (HFO's) precipitated from contaminated waters at several abandoned Sb deposits - Interdisciplinary assessment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153248. [PMID: 35051450 DOI: 10.1016/j.scitotenv.2022.153248] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 01/14/2022] [Accepted: 01/14/2022] [Indexed: 06/14/2023]
Abstract
The presented paper represents a comprehensive analysis of ochre sediments precipitated from Fe rich drainage waters contaminated by arsenic and antimony. Ochre samples from three abandoned Sb deposits were collected in three different seasons and were characterized from the mineralogical, geochemical, and microbiological point of view. They were formed mainly by poorly crystallized 2-line ferrihydrite, with the content of arsenic in samples ranging from 7 g·kg-1 to 130 g·kg-1 and content of antimony ranging from 0.25 g·kg-1 up to 12 g·kg-1. Next-generation sequencing approach with 16S RNA, 18S RNA and ITS markers was used to characterize bacterial, fungal, algal, metazoal and protozoal communities occurring in the HFOs. In the 16S RNA, the analysis dominated bacteria (96.2%) were mainly Proteobacteria (68.8%) and Bacteroidetes (10.2%) and to less extent also Acidobacteria, Actinobacteria, Cyanobacteria, Firmicutes, Nitrosprae and Chloroflexi. Alpha and beta diversity analysis revealed that the bacterial communities of individual sites do not differ significantly, and only subtle seasonal changes were observed. In this As and Sb rich, circumneutral microenvironment, rich in iron, sulfates and carbonates, methylotrophic bacteria (Methylobacter, Methylotenera), metal/reducing bacteria (Geobacter, Rhodoferax), metal-oxidizing and denitrifying bacteria (Gallionella, Azospira, Sphingopyxis, Leptothrix and Dechloromonas), sulfur-oxidizing bacteria (Sulfuricurvum, Desulphobulbaceae) and nitrifying bacteria (Nitrospira, Nitrosospira) accounted for the most dominant ecological groups and their impact over Fe, As, Sb, sulfur and nitrogen geocycles is discussed. This study provides evidence of diverse microbial communities that exist in drainage waters and are highly important in the process of mobilization or immobilization of the potentially toxic elements.
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Affiliation(s)
| | - Hana Majerová
- Hana Majerová, Cancer Research Institute, Department of Tumor Immunology, Biomedical Research Center, Slovak Academy of Sciences, Dubravska cesta 9, 84505 Bratislava, Slovakia
| | - Ivona Kautmanová
- SNM-Natural History Museum, Vajanského náb. 2, P.O. BOX 13, 810 06 Bratislava, Slovakia
| | - Ondrej Brachtýr
- Comenius University in Bratislava, Faculty of Natural Sciences, Department of Mineralogy, Petrology and Economic Geology, Ilkovičova 6, 842 15 Bratislava, Slovakia
| | - Dana Szabóová
- SNM-Natural History Museum, Vajanského náb. 2, P.O. BOX 13, 810 06 Bratislava, Slovakia
| | - Darina Arendt
- SNM-Natural History Museum, Vajanského náb. 2, P.O. BOX 13, 810 06 Bratislava, Slovakia
| | - Jana Brčeková
- Comenius University in Bratislava, Faculty of Natural Sciences, Department of Mineralogy, Petrology and Economic Geology, Ilkovičova 6, 842 15 Bratislava, Slovakia
| | - Peter Šottník
- Comenius University in Bratislava, Faculty of Natural Sciences, Department of Mineralogy, Petrology and Economic Geology, Ilkovičova 6, 842 15 Bratislava, Slovakia
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Xu WJ, Wan Q, Wang WF, Wang Y, Feng FY, Cheng JJ, Yuan JJ, Yu XY. Biodegradation of dibutyl phthalate by a novel endophytic Bacillus subtilis strain HB-T2 under in-vitro and in-vivo conditions. ENVIRONMENTAL TECHNOLOGY 2022; 43:1917-1926. [PMID: 33251967 DOI: 10.1080/09593330.2020.1858181] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 11/21/2020] [Indexed: 06/12/2023]
Abstract
The environmental prevalence and potential toxicity of dibutyl phthalate (DBP) motivate the attempt to develop feasible strategies to deal with DBP contamination. In this study, a strain of endphytic bacteria HB-T2 was isolated from sorrel roots and identified as Bacillus sp. by analysing its morphology, physiology, biochemistry and 16S rDNA sequence. The degradation efficiency of DBP by HB-T2 was almost identical under the temperature of 30∼40°C, but was significantly enhanced as the culture pH and inoculum size increases from 6.0 to 8.0, and 1% to 5% respectively. The degradation kinetics of DBP could be well described by the first-order kinetic model, with the degradation half-life ranging from 1.59 to 7.61 h when the initial concentrations of DBP were in the range of 5-20 mg/L. LC-MS analysis of the culture samples taken at varying intervals revealed monobutyl phthalate, phthalic acid and protocatechuic acid as the major metabolic intermediates during the degradation process. HB-T2 exhibited an excellent capability to degrade a wide range of phthalate esters (PAEs), especially butyl benzyl phthalate (BBP), dipentyl phthalate (DPP), and diisobutyl phthalate (DIBP). Inoculation of HB-T2 into Chinese cabbage (Brassica chinensis L.) growing in DBP-contaminated soils could significantly reduce the DBP levels in plant tissues and relieve the phytotoxic effects of DBP. Results of this study highlighted the great potential of this novel endophytic Bacillus subtilis strain HB-T2 for bioremediation of PAEs contamination and improvement of agricultural product safety by reducing PAEs accumulation in edible crops.
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Affiliation(s)
- Wen-Jun Xu
- College of Oceanology and Food Science, Quanzhou Normal University/Key Laboratory of Inshore Resources Biotechnology, Quanzhou, People's Republic of China
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
| | - Qun Wan
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
| | - Wen-Feng Wang
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
| | - Ya Wang
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
| | - Fa-Yun Feng
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
| | - Jin-Jin Cheng
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
| | - Jian-Jun Yuan
- College of Oceanology and Food Science, Quanzhou Normal University/Key Laboratory of Inshore Resources Biotechnology, Quanzhou, People's Republic of China
| | - Xiang-Yang Yu
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, People's Republic of China
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, People's Republic of China
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20
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Peng X, Li J, Sun L, Gao Y, Cao M, Luo J. Impacts of water deficit and post-drought irrigation on transpiration rate, root activity, and biomass yield of Festuca arundinacea during phytoextraction. CHEMOSPHERE 2022; 294:133842. [PMID: 35120948 DOI: 10.1016/j.chemosphere.2022.133842] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 01/19/2022] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Water deficit is a hazardous threat to phytoremediation, while the photosynthetic efficiency of plant leaves can rapidly recover after post-drought irrigation, thereby enhancing the root activity, transpiration rate, and metal accumulation capacity of plants. This study was designed to test whether the phytoextraction effect of drought-stressed Festuca arundinacea could recover to normal levels after post-drought irrigation. Two drought stress levels (D1, slight stress and D2, moderate stress) were carried out at one of five plant growth stages (G1, germinating; G2, tillering; G3, jointing; G4, booting; and G5, flowering). The results showed that drought stress, regardless of level, significantly decreased the transpiration rate of F. arundinacea by 38.9%-85.7%. The degree of reduction of this physiological index was significantly higher in D1G1 and D2G1 than in other treatments. The biomass yield and root activity in D1G3, D1G4, D1G5, D2G3, and D2G4 recovered and even surpassed the normal values after rewatering, suggesting that the detrimental effects of drought stress on F. arundinacea at certain growth stages can be compensated by post-drought irrigation. Drought stress also decreased the Cd uptake capacity of F. arundinacea, and the degree of reduction depended on the stress level and growth stage. Overcompensation for Cd accumulation was observed in D1G3, D1G4, D2G3, and D2G4 after post-drought irrigation. The results indicated that suitable irrigation strategies can improve the phytoextraction effect of F. arundinacea and conserve water resources in practice.
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Affiliation(s)
- Xiaobo Peng
- Key Laboratory of Exploration Technologies for Oil and Gas Resources, Ministry of Education, Yangtze University, Wuhan, China
| | - Jinrui Li
- Key Laboratory of Exploration Technologies for Oil and Gas Resources, Ministry of Education, Yangtze University, Wuhan, China
| | - Lianchang Sun
- Shengli Oil Field Oil Development Center Ltd., No. 89, Liaocheng Road, Dongying District, Dongying City, Shandong Province, China
| | - Yueping Gao
- Key Laboratory of Exploration Technologies for Oil and Gas Resources, Ministry of Education, Yangtze University, Wuhan, China
| | - Min Cao
- University of Leicester, University Road, Leicester, LE1 7RH, United Kingdom
| | - Jie Luo
- Key Laboratory of Exploration Technologies for Oil and Gas Resources, Ministry of Education, Yangtze University, Wuhan, China.
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Khan AL, Numan M, Bilal S, Asaf S, Crafword K, Imran M, Al-Harrasi A, Al-Sabahi JN, Rehman NU, A-Rawahi A, Lee IJ. Mangrove's rhizospheric engineering with bacterial inoculation improve degradation of diesel contamination. JOURNAL OF HAZARDOUS MATERIALS 2022; 423:127046. [PMID: 34481398 DOI: 10.1016/j.jhazmat.2021.127046] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 08/23/2021] [Accepted: 08/24/2021] [Indexed: 06/13/2023]
Abstract
Mangroves (Avicennia marina) growing in intertidal areas are often exposed to diesel spills, adversely damaging the ecosystem. Herein, we showed for the first time that mangrove seedlings' associations with bacteria could reprogram host-growth, physiology, and ability to degrade diesel. We found four bacterial strains [Sphingomonas sp.-LK11, Rhodococcus corynebacterioides-NZ1, Bacillus subtilis-EP1 Bacillus safensis-SH10] exhibiting significant growth during diesel degradation (2% and 5%, v/v) and higher expression of alkane monooxygenase compared to control. This is in synergy with reduced long-chain n-alkanes (C24-C30) during microbe-diesel interactions in the bioreactor. Among individual strains, SH10 exhibited significantly higher potential to improve mangrove seedling's morphology, anatomy and growth during diesel treatment in rhizosphere compared to control. This was also evidenced by reduced activities and gene expression of antioxidant enzymes (catalases, peroxidases, ascorbic peroxidases, superoxide dismutases and polyphenol peroxidases) and lipid peroxidation during microbe-diesel interactions. Interestingly, we noticed significantly higher soil-enzyme activities (phosphatases and glucosidases) and essential metabolites in seedling's rhizosphere after bacteria and diesel treatments. Degradation of longer n-alkane chains in the rhizosphere also revealed a potential pathway that benefits mangroves by bacterial strains during diesel contaminations. Current results support microbes' application to rhizoengineer plant growth, responses, and phytoextraction abilities in environments contaminated with diesel spills. AVAILABILITY OF DATA AND MATERIALS: The datasets generated during the current study are available in the NCBI GenBank ((https://www.ncbi.nlm.nih.gov).
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Affiliation(s)
- Abdul Latif Khan
- Natural & Medical Sciences Research Center, University of Nizwa, 616, Oman; Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA.
| | - Muhammad Numan
- Department of Biology, University of North Carolina at Greensboro, NC 27412, USA
| | - Saqib Bilal
- Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA
| | - Sajjad Asaf
- Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA
| | - Kerri Crafword
- Department of Biology and Biochemistry, College of Natural Science and Mathematics, University of Houston, TX, USA
| | - Muhammad Imran
- School of Applied Biosciences, Kyungpook National University, Daegu Korea, South Korea
| | - Ahmed Al-Harrasi
- Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA.
| | - Jamal Nasser Al-Sabahi
- Central Instrument Laboratory, College of Agriculture and Marine Sciences, Sultan Qaboos University, Muscat, Oman
| | - Najeeb Ur Rehman
- Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA
| | - Ahmed A-Rawahi
- Department of Engineering Technology, College of Technology, University of Houston, Sugar Land, 77479 TX, USA
| | - In-Jung Lee
- School of Applied Biosciences, Kyungpook National University, Daegu Korea, South Korea.
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22
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Li Y, Ma J, Li Y, Xiao C, Shen X, Chen J, Xia X. Nitrogen addition facilitates phytoremediation of PAH-Cd cocontaminated dumpsite soil by altering alfalfa growth and rhizosphere communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 806:150610. [PMID: 34597578 DOI: 10.1016/j.scitotenv.2021.150610] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 09/22/2021] [Accepted: 09/22/2021] [Indexed: 06/13/2023]
Abstract
Thousands of unlined landfills and open dumpsites seriously threatened the safety of soil and groundwater due to leachate leakage with a mass of pollutants, particularly heavy metals, organic contaminants and ammonia. Phytoremediation is widely used in the treatment of cocontaminated soils because it is cost-effective and environmentally friendly. However, the extent to which phytoremediation efficiency and plant physiological responses are affected by the high nitrogen (N) content in such cocontaminated soil is still uncertain. Here, pot experiments were conducted to investigate the effects of N addition on the applicability of legume alfalfa remediation for polycyclic aromatic hydrocarbon‑cadmium (PAHCd) co-/contaminated soil and the corresponding microbial regulation mechanism. The results showed that the PAH dissipation rates and Cd removal rates in the high-contamination groups increased with the external N supply, among which the pyrene dissipation rates in the cocontaminated soil was elevated most significantly, from 78.10% to 87.25%. However, the phytoremediation efficiency weakened in low cocontaminated soil, possibly because the excessive N content had inhibitory effects on the rhizobium Ensifer and restrained alfalfa growth. Furthermore, the relative abundance of PAH-degrading bacteria in the rhizosphere dominated PAH dissipation. As reflected by principal coordinate analysis (PCoA) analysis and hierarchical dendrograms, the microbial community composition changed with N addition, and a more pronounced shift was found in the rhizosphere relative to the endosphere or shoots of alfalfa. This study will provide a theoretical basis for legume plant remediation of dumpsites as well as soil contaminated with multiple pollutants.
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Affiliation(s)
- Yijia Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Junwei Ma
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Yuqian Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Chen Xiao
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Xinyi Shen
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Jiajun Chen
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
| | - Xinghui Xia
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, No. 19, Xinjiekouwai Street, HaiDian District, Beijing 100875, PR China.
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Perreault R, Laforest-Lapointe I. Plant-microbe interactions in the phyllosphere: facing challenges of the anthropocene. THE ISME JOURNAL 2022; 16:339-345. [PMID: 34522008 PMCID: PMC8776876 DOI: 10.1038/s41396-021-01109-3] [Citation(s) in RCA: 34] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/27/2021] [Accepted: 09/03/2021] [Indexed: 02/08/2023]
Abstract
Global change is a defining feature of the Anthropocene, the current human-dominated epoch, and poses imminent threats to ecosystem dynamics and services such as plant productivity, biodiversity, and environmental regulation. In this era, terrestrial ecosystems are experiencing perturbations linked to direct habitat modifications as well as indirect effects of global change on species distribution and extreme abiotic conditions. Microorganisms represent an important reservoir of biodiversity that can influence macro-organisms as they face habitat loss, rising atmospheric CO2 concentration, pollution, global warming, and increased frequency of drought. Plant-microbe interactions in the phyllosphere have been shown to support plant growth and increase host resistance to biotic and abiotic stresses. Here, we review how plant-microbe interactions in the phyllosphere can influence host survival and fitness in the context of global change. We highlight evidence that plant-microbe interactions (1) improve urban pollution remediation through the degradation of pollutants such as ultrafine particulate matter, black carbon, and atmospheric hydrocarbons, (2) have contrasting impacts on plant species range shifts through the loss of symbionts or pathogens, and (3) drive plant host adaptation to drought and warming. Finally, we discuss how key community ecology processes could drive plant-microbe interactions facing challenges of the Anthropocene.
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Affiliation(s)
- Rosaëlle Perreault
- grid.86715.3d0000 0000 9064 6198Département de biologie, Université de Sherbrooke, Sherbrooke, QC J1K 2R1 Canada
| | - Isabelle Laforest-Lapointe
- grid.86715.3d0000 0000 9064 6198Département de biologie, Université de Sherbrooke, Sherbrooke, QC J1K 2R1 Canada ,grid.86715.3d0000 0000 9064 6198Centre Sève, Université de Sherbrooke, Sherbrooke, QC J1K 2R1 Canada
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24
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Chlebek D, Płociniczak T, Gobetti S, Kumor A, Hupert-Kocurek K, Pacwa-Płociniczak M. Analysis of the Genome of the Heavy Metal Resistant and Hydrocarbon-Degrading Rhizospheric Pseudomonas qingdaonensis ZCR6 Strain and Assessment of Its Plant-Growth-Promoting Traits. Int J Mol Sci 2021; 23:ijms23010214. [PMID: 35008639 PMCID: PMC8745256 DOI: 10.3390/ijms23010214] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 12/21/2021] [Accepted: 12/21/2021] [Indexed: 12/28/2022] Open
Abstract
The Pseudomonas qingdaonensis ZCR6 strain, isolated from the rhizosphere of Zea mays growing in soil co-contaminated with hydrocarbons and heavy metals, was investigated for its plant growth promotion, hydrocarbon degradation, and heavy metal resistance. In vitro bioassays confirmed all of the abovementioned properties. ZCR6 was able to produce indole acetic acid (IAA), siderophores, and ammonia, solubilized Ca3(PO4)2, and showed surface active properties and activity of cellulase and very high activity of 1-aminocyclopropane-1-carboxylic acid deaminase (297 nmol α-ketobutyrate mg−1 h−1). The strain degraded petroleum hydrocarbons (76.52% of the initial hydrocarbon content was degraded) and was resistant to Cd, Zn, and Cu (minimal inhibitory concentrations reached 5, 15, and 10 mM metal, respectively). The genome of the ZCR6 strain consisted of 5,507,067 bp, and a total of 5055 genes were annotated, of which 4943 were protein-coding sequences. Annotation revealed the presence of genes associated with nitrogen fixation, phosphate solubilization, sulfur metabolism, siderophore biosynthesis and uptake, synthesis of IAA, ethylene modulation, heavy metal resistance, exopolysaccharide biosynthesis, and organic compound degradation. Complete characteristics of the ZCR6 strain showed its potential multiway properties for enhancing the phytoremediation of co-contaminated soils. To our knowledge, this is the first analysis of the biotechnological potential of the species P. qingdaonensis.
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Alves-Júnior M, de Sousa FO, Silva TF, Albino UB, Garcia MG, Moreira SMCDO, Vieira MRDS. Functional and morphological analysis of isolates of phylloplane and rhizoplane endophytic bacteria interacting in different cocoa production systems in the Amazon. CURRENT RESEARCH IN MICROBIAL SCIENCES 2021; 2:100039. [PMID: 34841330 PMCID: PMC8610332 DOI: 10.1016/j.crmicr.2021.100039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 05/18/2021] [Accepted: 05/22/2021] [Indexed: 11/25/2022] Open
Abstract
Endophytic bacteria colonize different internal tissues of plants without damaging their cells. They can establish themselves in the same niche as other microorganisms and develop antagonistic activities against phytopathogens. There is little research on the functional and morphological characterization of these bacteria in production systems in the Amazon. Thus, the objective of this work was to functionally and morphologically characterize endophytic bacteria isolated from cocoa trees (Theobroma cacao L.) and evaluate their antagonistic potential against phytopathogens. A total of 197 endophytic bacteria isolates were obtained from leaves and roots of cocoa plants with different production systems and at different times of the year. The characterization of functional groups consisted of proteolytic, amylolytic and cellulolytic activity and ability to fix nitrogen and solubilize phosphate. Morphological diversity was evaluated mainly according to the following parameters: shape, color, size and elevation of the colony. Thirteen isolates of endophytic bacteria, selected by cluster analysis, were used to evaluate the antagonistic potential in paired trials against four species of phytopathogenic fungi. The largest amount of endophytic bacteria was isolated from the root (95.9%), in the dry season. The most expressive activities with regards to the enzyme index were amylolytic (71.9%), proteolytic (70.2%) and nitrogen fixing (38.6%), respectively. The similarity analysis formed two clusters with isolates CS R 2.4 and CS R 2.25 exhibiting 100% similarity. Five isolates displayed inhibitory activity against phytopathogenic fungi, most notably isolate TS R 2.19, which exhibited antagonistic activity against all fungi and mycelial growth inhibition rates between 25.7% and 50.7%. Understanding the interaction between endophytes in cocoa plants is important as a possible additional tool in biological control. Our studies are incipient and the first to be carried out in different cocoa production systems in the state of Pará, Brazil.
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Affiliation(s)
- Miguel Alves-Júnior
- Faculty of Agronomic Engineering, Laboratory of Agricultural and Forestry Phytopathology, Federal University of Pará, Altamira, PA, 68372-040, Brazil
| | - Fabiana Oliveira de Sousa
- Faculty of Agronomic Engineering, Laboratory of Agricultural and Forestry Phytopathology, Federal University of Pará, Altamira, PA, 68372-040, Brazil
| | - Thays Ferreira Silva
- Faculty of Agronomic Engineering, Laboratory of Agricultural and Forestry Phytopathology, Federal University of Pará, Altamira, PA, 68372-040, Brazil
| | - Ulisses Brigatto Albino
- Faculty of Chemistry, Institute of Exact Sciences, Federal University of the South and Southeast of Pará, Marabá, PA 68507-590, Brazil
| | - Magali Gonçalves Garcia
- Faculty of Biological Sciences, Laboratory of Microbiology, Federal University of Pará, Altamira, PA 68372-040, Brazil
| | | | - Marcos Ribeiro da Silva Vieira
- Faculty of Agronomic Engineering, Laboratory of Physiology and Post-Harvest, Technology, Federal University of Pará, Altamira, PA 68372-040, Brazil
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26
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Wu X, Li J, Zhou Z, Lin Z, Pang S, Bhatt P, Mishra S, Chen S. Environmental Occurrence, Toxicity Concerns, and Degradation of Diazinon Using a Microbial System. Front Microbiol 2021; 12:717286. [PMID: 34790174 PMCID: PMC8591295 DOI: 10.3389/fmicb.2021.717286] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 10/08/2021] [Indexed: 12/07/2022] Open
Abstract
Diazinon is an organophosphorus pesticide widely used to control cabbage insects, cotton aphids and underground pests. The continuous application of diazinon in agricultural activities has caused both ecological risk and biological hazards in the environment. Diazinon can be degraded via physical and chemical methods such as photocatalysis, adsorption and advanced oxidation. The microbial degradation of diazinon is found to be more effective than physicochemical methods for its complete clean-up from contaminated soil and water environments. The microbial strains belonging to Ochrobactrum sp., Stenotrophomonas sp., Lactobacillus brevis, Serratia marcescens, Aspergillus niger, Rhodotorula glutinis, and Rhodotorula rubra were found to be very promising for the ecofriendly removal of diazinon. The degradation pathways of diazinon and the fate of several metabolites were investigated. In addition, a variety of diazinon-degrading enzymes, such as hydrolase, acid phosphatase, laccase, cytochrome P450, and flavin monooxygenase were also discovered to play a crucial role in the biodegradation of diazinon. However, many unanswered questions still exist regarding the environmental fate and degradation mechanisms of this pesticide. The catalytic mechanisms responsible for enzymatic degradation remain unexplained, and ecotechnological techniques need to be applied to gain a comprehensive understanding of these issues. Hence, this review article provides in-depth information about the impact and toxicity of diazinon in living systems and discusses the developed ecotechnological remedial methods used for the effective biodegradation of diazinon in a contaminated environment.
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Affiliation(s)
- Xiaozhen Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Jiayi Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Zhe Zhou
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Ziqiu Lin
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shimei Pang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Sandhya Mishra
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
| | - Shaohua Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, China
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Bioaugmentation-Enhanced Remediation of Crude Oil Polluted Water in Pilot-Scale Floating Treatment Wetlands. WATER 2021. [DOI: 10.3390/w13202882] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Floating treatment wetlands (FTWs) are cost-effective systems for the remediation of polluted water. In FTWs, the metabolic activity of microorganisms associated with plants is fundamental to treatment efficiency. Bioaugmentation, the addition of microorganisms with pollutant-degrading capabilities, appears to be a promising means to enhance the treatment efficiency of FTWs. Here, we quantified the effect of bioaugmentation with a four-membered bacterial consortium on the remediation of water contaminated with crude oil in pilot-scale FTWs planted with Phragmites australis or Typha domingensis. The bacteria had been isolated from the endosphere and rhizosphere of various plants and carry the alkane hydroxylase gene, alkB, involved in aerobic hydrocarbon degradation. During a treatment period of 36 days, FTWs planted with P. australis achieved a reduction in hydrocarbon concentration from 300 mg/L to 16 mg/L with and 56 mg/L without bioaugmentation. In the FTWs planted with T. domingensis, respective hydrocarbon concentrations were 46 mg/L and 84 mg/L. The inoculated bacteria proliferated in the rhizoplane and in the plant interior. Copy numbers of the alkB gene and its mRNA increased over time in plant-associated samples, suggesting increased bacterial hydrocarbon degradation. The results show that bioaugmentation improved the treatment of oil-contaminated water in FTWs by at least a factor of two, indicating that the performance of full-scale systems can be improved at only small costs.
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Slaimi R, Abassi M, Béjaoui Z. Assessment of Casuarina glauca as biofiltration model of secondary treated urban wastewater: effect on growth performances and heavy metals tolerance. ENVIRONMENTAL MONITORING AND ASSESSMENT 2021; 193:653. [PMID: 34528154 DOI: 10.1007/s10661-021-09438-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
The use of fast-growing tree species, such as Casuarina glauca for wastewater treatment could improve the quality of wastewater and offer an ecological and sustainable system. A hydroponically experiment was conducted to evaluate C. glauca ability to remove heavy metals from secondary treated urban wastewater (SWW). The effect of the SWW on plant biomass, some physiological parameters, heavy metals (Cd, Pb, Ni and Zn) bioaccumulation and removal from wastewater was evaluated. After 28 days, wastewater treatment C. glauca showed high efficiency for the removal of pathogenic bacteria such as faecal coliforms and faecal streptococci from SWW. A significant reduction was found for electrical conductivity, biochemical oxygen demand, chemical oxygen demand and suspended solids with 31%, 92%, 83% and 31% respectively. Casuarina glauca plants were able to remove heavy metal ions Cd, Pb, Ni and Zn from SWW and the removal efficiency was 92%, 77%, 83% and 73%, respectively. Casuarina glauca plants accumulated concentrations of heavy metals (Cd, Pb, Ni and Zn) in their roots higher than the shoots. SWW had a remarkable effect on plant growth and photosynthetic capacity in C. glauca compared with plants grown in tap water (control). The results indicated that C. glauca can act as scavengers of heavy metal ions from polluted water and confirms their ability for wastewater treatment.
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Affiliation(s)
- Ridha Slaimi
- Laboratory of Forest Ecology, National Institute for Research in Rural Engineering, Water and Forests (INRGREF), University of Carthage, 2080, Ariana, Tunisia.
- Department of Biology, Faculty of Sciences of Tunis, University of Tunis El Manar, 1060, Tunis, Tunisia.
| | - Mejda Abassi
- Laboratory of Forest Ecology, National Institute for Research in Rural Engineering, Water and Forests (INRGREF), University of Carthage, 2080, Ariana, Tunisia
| | - Zoubeir Béjaoui
- Laboratory of Forest Ecology, National Institute for Research in Rural Engineering, Water and Forests (INRGREF), University of Carthage, 2080, Ariana, Tunisia
- Faculty of Sciences of Bizerte University of Carthage, 7021, Jarzouna, Tunisia
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Ummara U, Noreen S, Afzal M, Ahmad P. Bacterial bioaugmentation enhances hydrocarbon degradation, plant colonization and gene expression in diesel-contaminated soil. PHYSIOLOGIA PLANTARUM 2021; 173:58-66. [PMID: 32691441 DOI: 10.1111/ppl.13171] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 06/23/2020] [Accepted: 07/10/2020] [Indexed: 05/27/2023]
Abstract
Environmental contamination by hydrocarbons is a major problem, and hydrocarbon accumulation in soil poses hazardous threat to ecosystems. Phytoremediation, which involves plants, is an encouraging technique for the removal of hydrocarbons from polluted soil and water. The purpose of this investigation was to examine whether bacterial inoculation enhanced the phytoremediation of hydrocarbons in diesel-contaminated soil vegetated with maize (Zea mays L.). The two cultivars of maize, MMRI Yellow and Pearl White, were planted in diesel-polluted soil (0, 1.5, 2.5, and 3.5 g diesel kg-1 soil), and inoculated with the consortium of three alkane-degrading bacterial strains, Arthrobacter oxydans ITRH49, Pseudomonas sp. ITRI73 and Pseudomonas sp. MixRI75. Bacterial inoculation enhanced plant growth and hydrocarbon degradation. Between two cultivars, MMRI Yellow showed better growth and hydrocarbon degradation in the presence and absence of bacterial inoculation. Maximum hydrocarbon degradation (80%) was observed in the soil having minimum concentration of diesel (1.5 g kg-1 soil), and vegetated with bacterial inoculated MMRI Yellow maize cultivar. Furthermore, more bacterial colonization, and abundance and expression of the alkane hydroxylase gene (alkB) were observed in the root interior than in the rhizosphere and shoot interior of the plants. The bacteria-mediated phytoremediation of soil contaminated with hydrocarbons suggested that the collective use of plants and bacteria was the most beneficial approach for the reclamation of diesel-contaminated soil in comparison with vegetation alone.
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Affiliation(s)
- Ume Ummara
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Sibgha Noreen
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Muhammad Afzal
- National Institute of Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Parvaiz Ahmad
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
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Lu H, Wei T, Lou H, Shu X, Chen Q. A Critical Review on Communication Mechanism within Plant-Endophytic Fungi Interactions to Cope with Biotic and Abiotic Stresses. J Fungi (Basel) 2021; 7:719. [PMID: 34575757 PMCID: PMC8466524 DOI: 10.3390/jof7090719] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/07/2021] [Accepted: 08/10/2021] [Indexed: 12/28/2022] Open
Abstract
Endophytic fungi infect plant tissues by evading the immune response, potentially stimulating stress-tolerant plant growth. The plant selectively allows microbial colonization to carve endophyte structures through phenotypic genes and metabolic signals. Correspondingly, fungi develop various adaptations through symbiotic signal transduction to thrive in mycorrhiza. Over the past decade, the regulatory mechanism of plant-endophyte interaction has been uncovered. Currently, great progress has been made on plant endosphere, especially in endophytic fungi. Here, we systematically summarize the current understanding of endophytic fungi colonization, molecular recognition signal pathways, and immune evasion mechanisms to clarify the transboundary communication that allows endophytic fungi colonization and homeostatic phytobiome. In this work, we focus on immune signaling and recognition mechanisms, summarizing current research progress in plant-endophyte communication that converge to improve our understanding of endophytic fungi.
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Affiliation(s)
- Hongyun Lu
- Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China; (H.L.); (T.W.); (H.L.)
| | - Tianyu Wei
- Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China; (H.L.); (T.W.); (H.L.)
| | - Hanghang Lou
- Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China; (H.L.); (T.W.); (H.L.)
| | - Xiaoli Shu
- College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China;
| | - Qihe Chen
- Department of Food Science and Nutrition, Zhejiang University, Hangzhou 310058, China; (H.L.); (T.W.); (H.L.)
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Kidd PS, Álvarez A, Álvarez-López V, Cerdeira-Pérez A, Rodríguez-Garrido B, Prieto-Fernández Á, Chalot M. Beneficial traits of root endophytes and rhizobacteria associated with plants growing in phytomanaged soils with mixed trace metal-polycyclic aromatic hydrocarbon contamination. CHEMOSPHERE 2021; 277:130272. [PMID: 33773318 DOI: 10.1016/j.chemosphere.2021.130272] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 03/07/2021] [Accepted: 03/10/2021] [Indexed: 06/12/2023]
Abstract
The diversity of cultivable bacteria associated with plants from phytomanaged soils with mixed trace metal (TM) and polycyclic aromatic hydrocarbon (PAH) contamination in Pierrelaye (France) was evaluated. The emphasis was on the cultivable bacterial community since the overall objective is to obtain inoculants to improve the remediation of this type of contaminated site. Root endophytic and rhizosphere soil bacterial counts were determined, and isolates were pooled by amplified rDNA restriction analysis and identified by 16S rDNA sequencing. Isolates were further characterized for the production of plant growth-promoting (PGP) substances, and resistance to TM. The selected strains were evaluated for their ability to degrade PAHs. The potential of cell-free microbial supernatant to increase the mobilisation of PAHs from the polluted soil of Pierrelaye was also evaluated. Proteobacteria and Actinobacteria dominated the collection of isolates, and differences in taxonomic diversity were observed between plant species (Populus or Zea mays) and depending on the remediation treatment (Populus inoculation with mycorrhizae or Populus intercropping with Alnus). The majority of isolates exhibited at least one of the tested PGP traits, as well as resistance to more than one TM. Several rhizosphere, endophyte and even one bulk soil isolate showed high rates of fluoranthene and pyrene reduction. The endophyte Rhizobium strain MR28 isolated from maize and degrading pyrene produced bioemulsifying molecules capable of improving the availability of PAHs from the soil of Pierrelaye. A selection of the most interesting strains was made for further re-inoculation experiments in order to assess their potential in rhizoremediation processes.
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Affiliation(s)
- Petra S Kidd
- Instituto de Investigaciones Agrobiológicas de Galicia (IIAG), Consejo Superior de Investigaciones Científicas (CSIC), Avda. de Vigo S/n, Santiago de Compostela, 15705, Spain
| | - Analía Álvarez
- Planta Piloto de Procesos Industriales Microbiológicos (PROIMI-CONICET), Avenida Belgrano y Pasaje Caseros, Tucumán, 4000, Argentina; Facultad de Ciencias Naturales e Instituto Miguel Lillo, Universidad Nacional de Tucumán (UNT), Miguel Lillo 205, Tucumán, 4000, Argentina.
| | - Vanessa Álvarez-López
- Instituto de Investigaciones Agrobiológicas de Galicia (IIAG), Consejo Superior de Investigaciones Científicas (CSIC), Avda. de Vigo S/n, Santiago de Compostela, 15705, Spain
| | - Andrea Cerdeira-Pérez
- Instituto de Investigaciones Agrobiológicas de Galicia (IIAG), Consejo Superior de Investigaciones Científicas (CSIC), Avda. de Vigo S/n, Santiago de Compostela, 15705, Spain
| | - Beatriz Rodríguez-Garrido
- Instituto de Investigaciones Agrobiológicas de Galicia (IIAG), Consejo Superior de Investigaciones Científicas (CSIC), Avda. de Vigo S/n, Santiago de Compostela, 15705, Spain
| | - Ángeles Prieto-Fernández
- Instituto de Investigaciones Agrobiológicas de Galicia (IIAG), Consejo Superior de Investigaciones Científicas (CSIC), Avda. de Vigo S/n, Santiago de Compostela, 15705, Spain
| | - Michel Chalot
- Chrono-environnement UMR6249, CNRS, Université Bourgogne Franche-Comté, F-25000, Besançon, France; Université de Lorraine, Faculté des Sciences et Technologies, 54000, Nancy, France
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Mpatani FM, Han R, Aryee AA, Kani AN, Li Z, Qu L. Adsorption performance of modified agricultural waste materials for removal of emerging micro-contaminant bisphenol A: A comprehensive review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 780:146629. [PMID: 34030339 DOI: 10.1016/j.scitotenv.2021.146629] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 03/02/2021] [Accepted: 03/16/2021] [Indexed: 06/12/2023]
Abstract
This review is an attempt to assess the adsorption performance of different green adsorbents derived from agricultural waste materials (AWMs) that were used for the elimination of bisphenol A (BPA) from aqueous matrices. Different processes including grafting, polymerization, activation and chemical treatment have been applied to functionalize and modify agricultural waste materials for the purposes of increasing their adsorptive performances toward BPA. The highest reported adsorption capacity of adsorbent from agricultural waste for the uptake of BPA is the highly microporous carbon adsorbent derived from Argan nut shell (1408 mg g-1). Hydrogen bonding, hydrophobic and π-π interactions were reported in most studies as the main mechanisms governing the adsorption of BPA onto agricultural waste adsorbents. Equilibrium isotherm and kinetic studies for the uptake of BPA onto agricultural waste adsorbents were best described by Langmuir/Freundlich model and pseudo-second order model, respectively. Despite the effective elimination of BPA by various agricultural waste adsorbents, an appropriate selection of elution solvent is important for effective desorption of BPA from spent adsorbent. To date, ethanol, diethyl ether-methanol, methanol-acetic acid, mineral acids and sodium hydroxide are the most eluents applied for desorption of BPA molecules loaded onto AW-adsorbents. Looking toward the future, studies on the agricultural waste adsorbents based on polymers, activated carbons, nanoparticles and highly microporous carbons should be mostly considered by the researchers toward removing BPA. These future studies should be performed both in laboratory, pilot and industrial scales, and also should report the sustainable techniques for disposal of the spent AW-adsorbents after lose their adsorption performance on BPA.
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Affiliation(s)
- Farid Mzee Mpatani
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China
| | - Runping Han
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China.
| | - Aaron Albert Aryee
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China
| | - Alexander Nti Kani
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China
| | - Zhaohui Li
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China.
| | - Lingbo Qu
- College of Chemistry, Green Catalysis Center, Zhengzhou University, No. 100 of Kexue Road, Zhengzhou 450001, People's Republic of China
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Sharma R, Vymazal J, Malaviya P. Application of floating treatment wetlands for stormwater runoff: A critical review of the recent developments with emphasis on heavy metals and nutrient removal. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 777:146044. [PMID: 33689897 DOI: 10.1016/j.scitotenv.2021.146044] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Revised: 02/14/2021] [Accepted: 02/18/2021] [Indexed: 06/12/2023]
Abstract
Floating treatment wetlands (FTWs) are increasingly gaining popularity due to a set of valuable features like wastewater remediation under varied conditions, ecosystem quality preservation, landscape conservation, and aesthetic benefits. FTW is a phyto-technology in which macrophytes grow on a floating raft with their roots in permanent contact with water and remove pollutants via several physicochemical-biological processes. FTW is highly capable of overcoming technical and operational challenges that come way in stormwater treatment due to the erratic nature of hydrologic and input pollutant loads because this innovative buoyant hydroponic design can move up and down with fluctuating water levels in the stormwater pond and can treat highly variable flows. Plants and biofilms attached to the roots hanging beneath the floating mat play a pivotal role in FTWs. The present review encompasses the concept of FTWs, their structural designs, relevance in stormwater management, and mechanism of plant uptake for pollutant removal. The role of FTWs to remove heavy metals and nutrients is also critically analyzed. Understanding hydraulics and other parameters of FTW is vital to effective design. Hence, the role of vegetation coverage, vegetation type, sorption media, aeration frequency, and intensity, and plant density to enhance system efficiency is also highlighted. Due to their operational flexibility and environmentally friendly working with no additional burden on existing urban land use, FTWs entice broad international interest and offer a coherent solution for stormwater management. MAIN FINDINGS: The review delivers state-of-the-art analysis of the current understanding of hydraulics and other parameters of FTWs, and associated mechanisms to enhance the treatment efficiency of FTWs for nutrients and heavy metals removal.
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Affiliation(s)
- Rozi Sharma
- Department of Environmental Sciences, University of Jammu, Jammu 180006, J&K, India
| | - Jan Vymazal
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Kamýcká 129, 16521 Praha 6, Czech Republic
| | - Piyush Malaviya
- Department of Environmental Sciences, University of Jammu, Jammu 180006, J&K, India.
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Gao L, Ma J, Liu Y, Huang Y, Mohamad OAA, Jiang H, Egamberdieva D, Li W, Li L. Diversity and Biocontrol Potential of Cultivable Endophytic Bacteria Associated with Halophytes from the West Aral Sea Basin. Microorganisms 2021; 9:microorganisms9071448. [PMID: 34361884 PMCID: PMC8303770 DOI: 10.3390/microorganisms9071448] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 06/28/2021] [Accepted: 07/01/2021] [Indexed: 11/16/2022] Open
Abstract
Endophytes associated with halophytes may contribute to the host's adaptation to adverse environmental conditions through improving their stress tolerance and protecting them from various soil-borne pathogens. In this study, the diversity and antifungal activity of endophytic bacteria associated with halophytic samples growing on the shore of the western Aral Sea in Uzbekistan were investigated. The endophytic bacteria were isolated from the nine halophytic samples by using the culture-dependent method and identified according to their 16S rRNA gene sequences. The screening of endophytic bacterial isolates with the ability to inhibit pathogenic fungi was completed by the plate confrontation method. A total of 289 endophytic bacterial isolates were isolated from the nine halophytes, and they belong to Firmicutes, Actinobacteria, and Proteobacteria. The predominant genera of the isolated endophytic bacteria were Bacillus, Staphylococcus, and Streptomyces, accounting for 38.5%, 24.7%, and 12.5% of the total number of isolates, respectively. The comparative analysis indicated that the isolation effect was better for the sample S8, with the highest diversity and richness indices. The diversity index of the sample S7 was the lowest, while the richness index of samples S5 and S6 was the lowest. By comparing the isolation effect of 12 different media, it was found that the M7 medium had the best performance for isolating endophytic bacteria associated with halophytes in the western Aral Sea Basin. In addition, the results showed that only a few isolates have the ability to produce ex-enzymes, and eight and four endophytic bacterial isolates exhibited significant inhibition to the growth of Valsa mali and Verticillium dahlia, respectively. The results of this study indicated that halophytes are an important source for the selection of microbes that may protect plant from soil-borne pathogens.
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Affiliation(s)
- Lei Gao
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinbiao Ma
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
| | - Yonghong Liu
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
| | - Yin Huang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
| | - Osama Abdalla Abdelshafy Mohamad
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
| | - Hongchen Jiang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
| | - Dilfuza Egamberdieva
- Faculty of Biology, National University of Uzbekistan, Tashkent 100174, Uzbekistan;
- Leibniz Centre for Agricultural Landscape Research (ZALF), 15374 Müncheberg, Germany
| | - Wenjun Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China
- Correspondence: (W.L.); (L.L.)
| | - Li Li
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China; (L.G.); (J.M.); (Y.L.); (Y.H.); (O.A.A.M.); (H.J.)
- Correspondence: (W.L.); (L.L.)
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35
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Li X, Lan X, Feng X, Luan X, Cao X, Cui Z. Biosorption capacity of Mucor circinelloides bioaugmented with Solanum nigrum L. for the cleanup of lead, cadmium and arsenic. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 212:112014. [PMID: 33548569 DOI: 10.1016/j.ecoenv.2021.112014] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 01/27/2021] [Accepted: 01/29/2021] [Indexed: 06/12/2023]
Abstract
The biosorption and bioaugmentation performances of Mucor circinelloides were investigated under different contact time, initial metal(loid) concentration and species. The microbe-plant interaction appeared synergistic with enhancing plant growth and alleviating oxidative damages induced by lead, cadmium and arsenic. The bioaugmentation with M. circinelloides led to significant immobilization on lead, cadmium and arsenic as indicated by the decreases of metal(loid) transfer and bioavailability in plant-microbe aqueous system. Lead, cadmium and arsenic were mainly allocated on cell wall and a few parts entered into intercellular system, suggesting cell wall adsorption and intracellular bioaccumulation served as the main mechanisms of M. circinelloides. The adsorption kinetics and isotherms on lead, cadmium and arsenic were fitted well with the pseudo-second-order and Langmuir models, with the maximum adsorption capacities of 500, 15.4 and 29.4 mg·g-1 fungal biomass at pH 6.0 and 25 ℃. The optimum initial concentration and contact time were 300-10-20 mg·L-1 and 2 h. This study provides a basis for M. circinelloides as a promising adsorbent and bioaugmented agent for the cleanup of soil/aqueous environment contaminated with lead, cadmium and arsenic.
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Affiliation(s)
- Xinxin Li
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China; Section of Soil and Crop Sciences, Cornell University, Ithaca, NY 14850, USA
| | - Xiang Lan
- College of Food Science and Engineering, Ocean University of China, Qingdao 266003, China
| | - Xiuwei Feng
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China
| | - Xiaoyu Luan
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China
| | - Xiufeng Cao
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China
| | - Zhaojie Cui
- School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China.
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Kataki S, Chatterjee S, Vairale MG, Dwivedi SK, Gupta DK. Constructed wetland, an eco-technology for wastewater treatment: A review on types of wastewater treated and components of the technology (macrophyte, biolfilm and substrate). JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 283:111986. [PMID: 33486195 DOI: 10.1016/j.jenvman.2021.111986] [Citation(s) in RCA: 58] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 12/12/2020] [Accepted: 01/09/2021] [Indexed: 06/12/2023]
Abstract
Constructed wetland (CW) represents an efficient eco-technological conglomerate interweaving water security, energy possibility and environmental protection. In the context of wastewater treatment technologies requiring substantial efficiency at reduced cost, chemical input and low environmental impact, applications of CW is being demonstrated at laboratory and field level with reasonably high contaminant removal efficiency and ecological benefits. However, along with the scope of applications, role of individual wetland component has to be re-emphasized through related research interventions. Hence, this review distinctively explores the concerns for extracting maximum benefit of macrophyte (focusing on interface of pollutant removal, root radial oxygen loss, root iron plaque, endophyte-macrophyte assisted treatment in CW, and prospects of energy harvesting from macrophyte) and role of biofilm (effect on treatment efficiency, composition and factors affecting) in a CW. Another focus of the review is on recent advances and developments in alternative low-cost substrate materials (including conventional type, industrial by-products, organic waste, mineral based and hybrid type) and their effect on target pollutants. The remainder of this review is organized to discuss the concerns of CW with respect to wastewater type (municipal, industrial, agricultural and farm wastewater). Attempt is made to analyze the practical relevance and significance of these aspects incorporating all recent developments in the areas to help making informed decisions about future directions for research and development related to CW.
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Affiliation(s)
- Sampriti Kataki
- Biodegradation Technology Division, Defence Research Laboratory, DRDO, Tezpur, Assam, India
| | - Soumya Chatterjee
- Biodegradation Technology Division, Defence Research Laboratory, DRDO, Tezpur, Assam, India.
| | - Mohan G Vairale
- Biodegradation Technology Division, Defence Research Laboratory, DRDO, Tezpur, Assam, India
| | - Sanjai K Dwivedi
- Biodegradation Technology Division, Defence Research Laboratory, DRDO, Tezpur, Assam, India
| | - Dharmendra K Gupta
- Ministry of Environment, Forest and Climate Change (MoEFCC), Indira Paryavaran Bhavan, New Delhi, India
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Mamirova A, Pidlisnyuk V, Amirbekov A, Ševců A, Nurzhanova A. Phytoremediation potential of Miscanthus sinensis And. in organochlorine pesticides contaminated soil amended by Tween 20 and Activated carbon. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:16092-16106. [PMID: 33245538 DOI: 10.1007/s11356-020-11609-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 11/09/2020] [Indexed: 06/11/2023]
Abstract
The organochlorine pesticides (OCPs) have raised concerns about being persistent and toxic to the environment. Phytoremediation techniques show promise for the revitalization of polluted soils. The current study focused on optimizing the phytoremediation potential of Miscanthus sinensis And. (M. sinensis), second-generation energy crop, by exploring two soil amendments: Tween 20 and activated carbon (AC). The results showed that when M. sinensis grew in OCP-polluted soil without amendments to it, the wide range of compounds, i.e., α-HCH, β-HCH, γ-HCH, 2.4-DDD, 4.4-DDE, 4.4-DDD, 4.4-DDT, aldrin, dieldrin, and endrin, was accumulated by the plant. The introduction of soil amendments improved the growth parameters of M. sinensis. The adding of Tween 20 enhanced the absorption and transmigration to aboveground biomass for some OCPs; i.e., for γ-HCH, the increase was by 1.2, for 4.4-DDE by 8.7 times; this effect was due to the reduction of the hydrophobicity which made pesticides more bioavailable for the plant. The adding of AC reduced OCPs absorption by plants, consequently, for γ-HCH by 2.1 times, 4.4-DDD by 20.5 times, 4.4-DDE by 1.4 times, 4.4-DDT by 8 times, α-HCH was not adsorbed at all, and decreased the translocation to the aboveground biomass: for 4.4-DDD by 31 times, 4.4-DDE by 2.8 times, and γ-HCH by 2 times; this effect was due to the decrease in the bioavailability of pesticides. Overall, the amendment of OCP-polluted soil by Tween 20 speeds the remediation process, and incorporation of AC permitted to produce the relatively clean biomass for energy.
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Affiliation(s)
- Aigerim Mamirova
- Faculty of Biology and Biotechnology, Al-Farabi Kazakh National University, Almaty, Kazakhstan, 050040.
- Faculty of Environment, Jan Evangelista Purkyně University, Usti nad Labem, Czech Republic.
| | - Valentina Pidlisnyuk
- Faculty of Environment, Jan Evangelista Purkyně University, Usti nad Labem, Czech Republic
| | - Aday Amirbekov
- Faculty of Mechatronics, Technical University of Liberec, Liberec, Czech Republic
| | - Alena Ševců
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Liberec, Czech Republic
| | - Asil Nurzhanova
- Institute of Plant Biology and Biotechnology MES RK, Almaty, Kazakhstan
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Ani E, Adekunle AA, Kadiri AB, Njoku KL. Rhizoremediation of hydrocarbon contaminated soil using Luffa aegyptiaca (Mill) and associated fungi. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 23:1444-1456. [PMID: 33765399 DOI: 10.1080/15226514.2021.1901852] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The potentials of Luffa aegyptiaca and its rhizospheric, non-mycorrhizal fungi in biodegrading and bio-remediating hydrocarbon contaminated soil were investigated in-vitro and in-situ. Biodegradation study was done in two stages: preliminary study using hydrocarbon treated filter paper and in-vitro with Mineral Salt Media (MSM) read on Spectrophotometer at two photo synthetically active wavelengths (530 nm and 620 nm) while rhizoremediation study was done in-situ in contaminated plot of land. Hydrocarbon utilization ability of the fungi and plant were confirmed using total petroleum hydrocarbon (TPH) analysis and gas chromatography mass spectroscopy (GC-MS). Results show differing rates of hydrocarbon utilization by isolated fungi. In-vitro biodegradation study showed that Aspergillus niger, Fusarium solani, Curvularia lunata and Trichoderma harzianum were best in degrading kerosene (78%), diesel (70%), spent engine oil (83%) and crude oil (77%) respectively. Rhizoremediation study using L. aegyptiaca and C. lunata show that remediation was enhanced to 72.15% as against 32.32% and 14% when only the plant or fungus is used respectively. Hydrocarbon accumulation by L. aegyptiaca also decreased in the presence of the fungus. Curvularia lunata is shown in this study to enhance the germination, survival, growth and bioremediation efficiency of L. aegyptiaca in polluted environment.Novelty statement The potentials of Curvularia lunata, a non-mycorrhizal fungi associated with L. aegyptiaca in survival, growth and phytoremediation of petroleum hydrocarbon polluted soil by L. aegyptiaca is highlighted in this study. Luffa aegyptiaca and its associated fungi is shown to bio-remediate petroleum hydrocarbon through phyto-accumulation and rhizosphere effect.
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Affiliation(s)
- Emmanuel Ani
- Environmental Biology Unit, Department of Biological Sciences, Yaba College of Technology, Lagos, Nigeria
| | | | - Akeem B Kadiri
- Department of Botany, University of Lagos, Lagos, Nigeria
| | - Kelechi L Njoku
- Department of Cell Biology and Genetics, University of Lagos, Lagos, Nigeria
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Agarwal P, Giri BS, Rani R. Unravelling the Role of Rhizospheric Plant-Microbe Synergy in Phytoremediation: A Genomic Perspective. Curr Genomics 2020; 21:334-342. [PMID: 33093797 PMCID: PMC7536802 DOI: 10.2174/1389202921999200623133240] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 05/15/2020] [Accepted: 05/24/2020] [Indexed: 12/27/2022] Open
Abstract
Background Accretion of organic and inorganic contaminants in soil interferes in the food chain, thereby posing a serious threat to the ecosystem and adversely affecting crop productivity and human life. Both endophytic and rhizospheric microbial communities are responsible for the biodegradation of toxic organic compounds and have the capability to enhance the uptake of heavy metals by plants via phytoremediation approaches. The diverse set of metabolic genes encoding for the production of biosurfactants and biofilms, specific enzymes for degrading plant polymers, modification of cell surface hydrophobicity and various detoxification pathways for the organic pollutants, plays a significant role in bacterial driven bioremediation. Various genetic engineering approaches have been demonstrated to modulate the activity of specific microbial species in order to enhance their detoxification potential. Certain rhizospheric bacterial communities are genetically modified to produce specific enzymes that play a role in degrading toxic pollutants. Few studies suggest that the overexpression of extracellular enzymes secreted by plant, fungi or rhizospheric microbes can improve the degradation of specific organic pollutants in the soil. Plants and microbes dwell synergistically, where microbes draw benefit by nutrient acquisition from root exudates whereas they assist in plant growth and survival by producing certain plant growth promoting metabolites, nitrogen fixation, phosphate solubilization, auxin production, siderophore production, and inhibition or suppression of plant pathogens. Thus, the plant-microbe interaction establishes the foundation of the soil nutrient cycle as well as decreases soil toxicity by the removal of harmful pollutants. Conclusion The perspective of integrating genetic approach with bioremediation is crucial to evaluate connexions among microbial communities, plant communities and ecosystem processes with a focus on improving phytoremediation of contaminated sites.
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Affiliation(s)
- Priyanka Agarwal
- 1Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj-211004, Uttar Pradesh, India; 2Department of Chemical Engineering and Technology, Centre of Advanced Study, Indian Institute of Technology Banaras Hindu University, Varanasi221005, India
| | - Balendu Shekher Giri
- 1Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj-211004, Uttar Pradesh, India; 2Department of Chemical Engineering and Technology, Centre of Advanced Study, Indian Institute of Technology Banaras Hindu University, Varanasi221005, India
| | - Radha Rani
- 1Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj-211004, Uttar Pradesh, India; 2Department of Chemical Engineering and Technology, Centre of Advanced Study, Indian Institute of Technology Banaras Hindu University, Varanasi221005, India
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Feng NX, Liang QF, Feng YX, Xiang L, Zhao HM, Li YW, Li H, Cai QY, Mo CH, Wong MH. Improving yield and quality of vegetable grown in PAEs-contaminated soils by using novel bioorganic fertilizer. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 739:139883. [PMID: 32544682 DOI: 10.1016/j.scitotenv.2020.139883] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2020] [Revised: 05/30/2020] [Accepted: 05/31/2020] [Indexed: 06/11/2023]
Abstract
Phthalate acid esters (PAEs) are ubiquitous pollutants in agricultural soils. Application of bioorganic fertilizer (BOF) containing beneficial microbes represents a promising approach to improve the yield and quality of crops grown in contaminated soils. In the present study, a novel multifunctional bioorganic fertilizer N-BOF was developed by using compost of sewage sludge and agricultural waste and inoculating with PAEs-degrading B. megaterium YJB3 and phosphate solubilizing B. megaterium YLYP1. Its feasibility of improving the yield and quality of vegetable grown in PAEs (including DBP and DEHP) contaminated soil was evaluated by pot experiments. The N-BOF could effectively promote plant growth, with biomass increasing by 4-66.9% and 19-110% compared to chemical (CF) and no fertilizer (CK), respectively. The concentrations of DBP and DEHP in shoots of chemically fertilised vegetable ranged 1.23-3.12 mg/kg (dry weight, DW) and 1.63-3.89 mg/kg (DW), respectively. Their concentrations were significantly decreased (p < 0.05) when N-BOF was applied (1%, 2%, 5% amendment), especially at higher application rate ranging 0.11-0.3 mg/kg (DW) and 0.16-0.32 mg/kg (DW), respectively. Meanwhile, vegetable quality attributes were also significantly improved when 2% N-BOF was applied, with increase in the contents of vitamin C, vitamin B1, total protein, and starch, and decrease in the contents of nitrite and nitrate. In this case, the human health risk from consumption of the vegetable grown in PAEs-contaminated soil could be significantly reduced. Thus, our study is expected to provide an efficient way of high-value utilization of organic substrates by producing low-cost but high quality N-BOF. Future studies on the effects of N-BOF in terms of fertilizer regimes on yield and quality of the vegetable are needed, and further field studies for assessing the long-term efficacy and reliability of this promising N-BOF are also warranted.
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Affiliation(s)
- Nai-Xian Feng
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Qi-Feng Liang
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Yu-Xi Feng
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Lei Xiang
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Hai-Ming Zhao
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Yan-Wen Li
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Hui Li
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Quan-Ying Cai
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China
| | - Ce-Hui Mo
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China.
| | - Ming-Hung Wong
- Guangdong Provincial Research Center for Environment Pollution Control and Remediation Materials, College of Life Science and Technology, Jinan University, Guangzhou 510632, China; Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, The Education University of Hong Kong, Tai Po, Hong Kong, China
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Valizadeh Rad K, Motesharezadeh B, Alikhani HA, Dadrasnia A. The potential use of Cordia myxa in the remediation of crude oil pollution. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 23:445-453. [PMID: 33016103 DOI: 10.1080/15226514.2020.1825326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
This study investigated the effects of hydrocarbon-degrading bacteria and organic matter on a crude oil-polluted soil by Cordia myxa. The treatments consisted of crude oil at two levels (3 and 6% w/w), municipal waste compost at two levels (5 and 10% v/v), and two different bacterial strains (Pseudomonas sp.141 and Pseudomonas sp. 27ps). At the end of the growth period, the plants were harvested and prepared for the laboratory analyses. The greatest population of oil degrading-bacteria (4.6 × 106 CFU/g soil) was observed in the treatment containing 10% compost, 6% crude oil, and Pseudomonas sp.141. The highest crude oil degradation (76.49%) was recorded in the soil polluted with 6% crude oil, amended with 10% compost, and inoculated with Pseudomonas sp.141. The investigation on the degradation of the chains of C10-C35 compounds indicated that, in various treatments, the most abundant compound was among those with fewer carbon atoms (C12-C25), so the application of organic matter boosted the degradation of crude oil. In conclusion, C. myxa seedlings has an acceptable efficiency in the remediation of the oil-contaminated soil affected by biological factors (compost and Pseudomonas bacteria), which is because of their high tolerance to the pollution and their ability to penetrate deeper soil layers.
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Affiliation(s)
- Keyvan Valizadeh Rad
- Soil Science Engineering Department, University College of Agriculture & Natural Resource, University of Tehran, Karaj, Iran
| | - Babak Motesharezadeh
- Soil Science Engineering Department, University College of Agriculture & Natural Resource, University of Tehran, Karaj, Iran
| | - Hossein Ali Alikhani
- Soil Science Engineering Department, University College of Agriculture & Natural Resource, University of Tehran, Karaj, Iran
| | - Arezoo Dadrasnia
- Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP3), Department of Environmental Science and Engineering, Fudan University, Shanghai, China
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Fast and efficient adsorption of bisphenols pollutants from water by using Hydroxypropyl-β-cyclodextrin polymer. REACT FUNCT POLYM 2020. [DOI: 10.1016/j.reactfunctpolym.2020.104678] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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Wang W, Wan Q, Li Y, Ge J, Feng F, Yu X. Application of an Endophyte Enterobacter sp. TMX13 to Reduce Thiamethoxam Residues and Stress in Chinese Cabbage ( Brassica chinensis L). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:9180-9187. [PMID: 32806115 DOI: 10.1021/acs.jafc.0c03523] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
A strain of thiamethoxam-degrading endophyte, named TMX13, was isolated from roots of mulberry (Morus alba L.) and was identified as Enterobacter sp. Inoculating Chinese cabbage (Brassica chinensis L) with strain TMX13-gfp (gfp-labeled TMX13) could significantly reduce thiamethoxam residues in the aboveground part (edible portion) of the vegetable. The theoretical daily intake (TDI) of thiamethoxam via consumption of TMX13-gfp inoculated Chinese cabbage was 0.17 μg/kg body weight per day, far less than the prescribed acceptable daily intake (ADI) for this pesticide. TMX13-gfp colonization could increase the leaf chlorophyll content and plant biomass and promote the development of plant roots. Compared with the uninoculated treatment, the contents of malondialdehyde (MDA) and hydrogen peroxide (H2O2) and the activity of superoxide dismutase (SOD) in leaves of the TMX13-gfp inoculated plants decreased by 18.4%-60.2%, suggesting that TMX13-gfp colonization could alleviate the oxidative stress induced by thiamethoxam exposure. The total amounts of organic acids and amino acids in root exudates from the TMX13-gfp inoculated Chinese cabbage decreased by 9.2% and 85.2%, respectively. Results of this study lead to the conclusion that the isolated endophyte Enterobacter sp. TMX13 could reduce thiamethoxam residues in edible vegetables, promote plant growth, and alleviate the phytotoxic effects induced by thiamethoxam exposure.
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Affiliation(s)
- Wenfeng Wang
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Qun Wan
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Yixin Li
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Jing Ge
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Fayun Feng
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Xiangyang Yu
- Key Laboratory of Food Quality and Safety of Jiangsu Province, State Key Laboratory Breeding Base, Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing 210014, China
- Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
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Comparison of Two Inoculation Methods of Endophytic Bacteria to Enhance Phytodegradation Efficacy of an Aged Petroleum Hydrocarbons Polluted Soil. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10081196] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Endophyte-enhanced phytodegradation is a promising technology to clean up polluted soils. To improve the success rate of this nature-based remediation approach, it is important to advance the inoculation method as this has been shown to strongly affect the final outcome. However, studies evaluating inoculation strategies and their effect on hydrocarbon degradation are limited. This study aims to investigate two different manners of endophyte inoculation in Lolium perenne growing in an aged petroleum hydrocarbon polluted soil: (1) direct soil inoculation (SI), and (2) pre-inoculation of the caryopses followed by soil inoculation (PI). Different endophytic bacterial strains, Rhodococcus erythropolis 5WK and Rhizobium sp. 10WK, were applied individually as well as in combination. Depending on the method of inoculation, the petroleum hydrocarbon (PHC) degradation potential was significantly different. The highest PHC removal was achieved after pre-inoculation of ryegrass caryopses with a consortium of both bacterial strains. Moreover, both strains established in the aged-polluted soil and could also colonize the roots and shoots of L. perenne. Importantly, used endophytes showed the selective colonization of the environment compartments. Our findings show that the method of inoculation determines the efficiency of the phytodegradation process, especially the rate of PHC degradation. This study provides valuable information for choosing the most cost-effective and beneficial means to optimize phytodegradation.
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A potentially important resource: endophytic yeasts. World J Microbiol Biotechnol 2020; 36:110. [PMID: 32656593 DOI: 10.1007/s11274-020-02889-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Accepted: 07/04/2020] [Indexed: 12/31/2022]
Abstract
Recent advancements in the research on endophytes isolated from plants and crops have greatly broadened its application in various fields. Endophytic bacteria and endophytic fungi are known to promote the growth of various plants. Besides, the secondary metabolites such as alcohol and xylitol secreted by the endophytic yeast also help their hosts to resist microbial invasion. This makes them a potential substitute for chemical-based control methods. Moreover, the plant hosts can also provide nutrients for the growth of endophytic yeasts. To achieve the symbiotic relationship, yeasts must colonize most parts of the plant tissues, including intercellular spaces, cytoplasm, stomata of seeds, roots, stems, leaves, and fruits as well. Conventionally, isolation of endophytic yeasts from different plant tissues and understanding their interior plants colonization mechanism have remainedkey strategies to exploit their key potentials. In this review, we will elaborate on the diversity, characteristics of colonization, and the factors that influence the distribution of endophytic yeasts. This review also lays a theoretical foundation for the application of endophytic yeasts in various industrial and agricultural practices.
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Role of Microorganisms in the Remediation of Wastewater in Floating Treatment Wetlands: A Review. SUSTAINABILITY 2020. [DOI: 10.3390/su12145559] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This article provides useful information for understanding the specific role of microbes in the pollutant removal process in floating treatment wetlands (FTWs). The current literature is collected and organized to provide an insight into the specific role of microbes toward plants and pollutants. Several aspects are discussed, such as important components of FTWs, common bacterial species, rhizospheric and endophytes bacteria, and their specific role in the pollutant removal process. The roots of plants release oxygen and exudates, which act as a substrate for microbial growth. The bacteria attach themselves to the roots and form biofilms to get nutrients from the plants. Along the plants, the microbial community also influences the performance of FTWs. The bacterial community contributes to the removal of nitrogen, phosphorus, toxic metals, hydrocarbon, and organic compounds. Plant–microbe interaction breaks down complex compounds into simple nutrients, mobilizes metal ions, and increases the uptake of pollutants by plants. The inoculation of the roots of plants with acclimatized microbes may improve the phytoremediation potential of FTWs. The bacteria also encourage plant growth and the bioavailability of toxic pollutants and can alleviate metal toxicity.
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Yanitch A, Kadri H, Frenette-Dussault C, Joly S, Pitre FE, Labrecque M. A four-year phytoremediation trial to decontaminate soil polluted by wood preservatives: phytoextraction of arsenic, chromium, copper, dioxins and furans. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1505-1514. [PMID: 32643383 DOI: 10.1080/15226514.2020.1785387] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Widely used as wood preservatives for the last century, Pentachlorophenol (PCP) and chromated copper arsenate (CCA) have been shown to leach from treated surfaces and contaminate soil of wood storage sites. We performed a four-year field phytoremediation trial in southern Quebec (Canada) on a site contaminated with PCP and CCA with the following objectives: (1) assess the potential of willow, fescue, alfalfa and Indian mustard to tolerate and translocate CCA and PCP residues in their aerial tissues, (2) investigate the possibility of phytoextraction of dioxins and furans, and (3) test the effect of nitrogen fertilizer on phytoremediation performance. We showed that while nitrogen fertilization increased the chlorophyll content of plants, it did not result in a significantly greater plant biomass. We also showed that plants grown in the presence of PCP/CCA residues were able to translocate and concentrate trace elements in their aerial tissues, but also dioxins and furans (PCDD/F). This suggests that plants grown on sites polluted by PCP might contain dioxins and furans and should be treated as contaminated by these toxic chemicals. Finally, the reduction of soil contaminants at the end of the trial suggests that phytoremediation is a promising approach for decontaminating such sites.
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Affiliation(s)
- Aymeric Yanitch
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Canada
| | - Hafssa Kadri
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Canada
| | | | - Simon Joly
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Canada
- Montreal Botanical Garden, Montréal, Canada
| | - Frederic E Pitre
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Canada
- Montreal Botanical Garden, Montréal, Canada
| | - Michel Labrecque
- Institut de recherche en biologie végétale, Université de Montréal, Montréal, Canada
- Montreal Botanical Garden, Montréal, Canada
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Masoudian Z, Salehi-Lisar SY, Norastehnia A. Phytoremediation potential of Azolla filiculoides for sodium dodecyl benzene sulfonate (SDBS) surfactant considering some physiological responses, effects of operational parameters and biodegradation of surfactant. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:20358-20369. [PMID: 32240507 DOI: 10.1007/s11356-020-08286-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 03/02/2020] [Indexed: 05/27/2023]
Abstract
In this study, phytoremediation potential of the Azolla filiculoides Lam. was examined for sodium dodecyl benzene sulfonate (SDBS) anionic surfactant. Furthermore, the effect of surfactant treatment on some physiological characteristics of Azolla was studied. The surfactant bioremoval efficiency was studied under variable conditions including treatment time, initial surfactant concentration, Azolla fresh weight, temperature, and pH. Results showed that surfactant removal efficiency of A. filiculoides was significantly enhanced with increasing of temperature, initial surfactant concentration, and amount of Azolla. SDBS led to a reduction in growth rate and total chlorophyll content, but effect index of Azolla increased by higher concentrations of surfactant. In contrast, antioxidant enzymes activities including polyphenol oxidase, ascorbate peroxidase, catalase, and peroxidase, as well as nonenzymatic antioxidants such as total carotenoids and anthocyanin contents significantly increased probably due to the ability of plant to overcome oxidative stress induced by SDBS. An increase in antioxidant activity based on 2, 2-diphenyl-1-picrylhydrazil (DPPH) confirmed this fact. An increase in the amount of hydrogen peroxide and reduction in membrane stability index indicated the induction of oxidative stress. As a result of SDBS biodegradation, 6 homologs of sulfophenyl carboxylates (SPCs) including C2 to C7-SPC and benzenesulfonate ring were identified by liquid chromatography-mass spectroscopy (LC-MS) analysis.
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Affiliation(s)
- Zahra Masoudian
- Department of Plant Sciences, Faculty of Natural Sciences, University of Tabriz, Tabriz, East Azerbaijan, 5166616471, Iran
| | - Seyed Yahya Salehi-Lisar
- Department of Plant Sciences, Faculty of Natural Sciences, University of Tabriz, Tabriz, East Azerbaijan, 5166616471, Iran.
| | - Akbar Norastehnia
- Department of Biology, Faculty of Sciences, University of Guilan, Rasht, Iran
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Liu T, Xiao Y, Yin J, Yi T, Zhou Z, Hsiang T, Tang Q, Chen W. Effects of Cultured Root and Soil Microbial Communities on the Disease of Nicotiana tabacum Caused by Phytophthora nicotianae. Front Microbiol 2020; 11:929. [PMID: 32499770 PMCID: PMC7243367 DOI: 10.3389/fmicb.2020.00929] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 04/20/2020] [Indexed: 12/29/2022] Open
Abstract
BACKGROUND Black shank, caused by the oomycete pathogen Phytophthora nicotianae, is responsible for huge economic losses worldwide. Research has focused on biocontrol to prevent disease and to minimize the use of synthetic fungicides. METHODS We explored and compared the efficacy of suppressive microflora cultured from soil and roots on the growth of P. nicotianae for controlling the incidence of black shank. RESULTS We found that 31 microfloral communities, enriched from 40 root samples but only 18 microfloral communities from soil samples, were antagonistic to P. nicotianae. In the field experiment, the root functional microflora (RFM) showed a greater suppressiveness of black shank than the soil functional microflora (SFM), while both RFM and SFM altered diversity, composition, structure, and interaction of soil bacterial communities during plant growth. Although the inoculation of RFM onto roots significantly (p < 0.05) decreased microbial diversity, molecular ecological network analysis indicated more possible interactions among soil microbes, while an opposite trend was observed with SFM inoculation. Linear regression analysis revealed that diversity indices were negatively correlated with suppression on the black shank, suggesting that specific taxa (e.g., OTU_322 and OTU_6478) could colonize and be active during plant growth at the expense of microbial diversity. In addition, 18 functional strains, isolated and screened from 3 RMF (12 strains) and 3 SMF (6 strains), were identified as bacterial genera Acinetobacter (12), Enterobacter (1), Bacillus (1), Stenotrophomonas (2), and Citrobacter (2). Spearman's ranked correlation tests revealed that relative abundances of some OTUs affiliated with genera Acinetobacter, Enterobacter, and Bacillus were significantly (p < 0.05) and positively correlated with the level of disease suppression. CONCLUSION Microfloral communities or key functional species isolated from plant roots might be more effective in controlling black shank than those from soil, and they may be developed for disease control.
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Affiliation(s)
- Tianbo Liu
- College of Plant Protection, Hunan Agricultural University, Changsha, China
- Central South Agricultural Test Station of China Tobacco, Changsha, China
| | - Yunhua Xiao
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China
| | - Jian Yin
- College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Tuyong Yi
- College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Zhicheng Zhou
- Central South Agricultural Test Station of China Tobacco, Changsha, China
| | - Tom Hsiang
- School of Environmental Sciences, University of Guelph, Guelph, ON, Canada
| | - Qianjun Tang
- College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Wu Chen
- College of Plant Protection, Hunan Agricultural University, Changsha, China
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From Laboratory Tests to the Ecoremedial System: The Importance of Microorganisms in the Recovery of PPCPs-Disturbed Ecosystems. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10103391] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The presence of a wide variety of emerging pollutants in natural water resources is an important global water quality challenge. Pharmaceuticals and personal care products (PPCPs) are known as emerging contaminants, widely used by modern society. This objective ensures availability and sustainable management of water and sanitation for all, according to the 2030 Agenda. Wastewater treatment plants (WWTP) do not always mitigate the presence of these emerging contaminants in effluents discharged into the environment, although the removal efficiency of WWTP varies based on the techniques used. This main subject is framed within a broader environmental paradigm, such as the transition to a circular economy. The research and innovation within the WWTP will play a key role in improving the water resource management and its surrounding industrial and natural ecosystems. Even though bioremediation is a green technology, its integration into the bio-economy strategy, which improves the quality of the environment, is surprisingly rare if we compare to other corrective techniques (physical and chemical). This work carries out a bibliographic review, since the beginning of the 21st century, on the biological remediation of some PPCPs, focusing on organisms (or their by-products) used at the scale of laboratory or scale-up. PPCPs have been selected on the basics of their occurrence in water resources. The data reveal that, despite the advantages that are associated with bioremediation, it is not the first option in the case of the recovery of systems contaminated with PPCPs. The results also show that fungi and bacteria are the most frequently studied microorganisms, with the latter being more easily implanted in complex biotechnological systems (78% of bacterial manuscripts vs. 40% fungi). A total of 52 works has been published while using microalgae and only in 7% of them, these organisms were used on a large scale. Special emphasis is made on the advantages that are provided by biotechnological systems in series, as well as on the need for eco-toxicological control that is associated with any process of recovery of contaminated systems.
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