Characterization of humins from different natural sources and the effect on microbial reductive dechlorination of pentachlorophenol

The evolution of structural characteristics and redox properties of humin during the composting of sludge and corn straw

Humins (HMs), the insoluble faction of humic substances (HSs), play a pivotal role in the bioremediation of pollutants by acting as electron shuttles that modulate the interactions between microorganisms and pollutants. This crucial function is intricately linked to their structural composition and electron transfer capabilities. However, the dynamics of the electron transfer capacity (ETC) of HM extracted during the composting process and its determinants have yet to be fully elucidated. This study undertakes a comprehensive analysis of the ETC of HM derived from composting, employing electrochemical techniques alongside spectroscopic methods and elemental analysis to explore the influencing factors, including the electron accepting capacity (EAC), electron donating capacity (EDC), and electron reversible rate (ERR). Our findings reveal substantial variations in the EAC and EDC of HM throughout the composting process, with EAC values ranging from 133.03-220.98 μmol e- gC-1 and EDC values from 111.17-229.33 μmol e- gC-1. Notably, the composting process enhances the ERR and EDC of HM while diminishing their EAC. This shift is accompanied by an augmented presence of aromatic structures, polar functional groups, quinones, and nitrogen - and sulfur-containing moieties, thereby boosting the HM's EDC. Conversely, the reduction in EAC is associated with a decline in lignin carbon content and the abundance of oxygen-containing moieties, as well as the diminishment of visible fulvic-like and protein-like substances within HM. Importantly, humic-like substances and nitrogen-containing moieties within HM demonstrated the capacity for repeated electron transfer, underscoring their significance in the context of environmental remediation.

Changes in Soil Humin Macromolecular Structure Resulting from Long-Term Catch Cropping

The aim of this study was to assess the effect of long-term catch crop application on the structural properties of humin, which is considered the most recalcitrant fraction of soil organic matter. Soil samples from a 30-year field experiment on triticale cultivated with and without catch crops were analysed to determine the total organic carbon content and fractional composition of humic substances. Meanwhile, humin isolated from bulk soil was analysed to determine its elemental composition and spectroscopic properties measured with UV-Vis, fluorescence, and 13C-CPMAS-NMR. It was found that catch crop farming enhanced the formation of highly reactive humus substances, like low-molecular-weight fractions and humic acids, while decreasing the humin fraction. The higher H/C and O/C atomic ratios of humin and the UV-Vis, fluorescence, and 13C-CPMAS-NMR results confirmed a higher share of oxygen-containing functional groups in humin isolated from the soil with catch crop rotation, also corroborating its greater aliphatic nature. Under the conditions of our field experiment, the results indicated that organic residues from catch crops quickly undergo the decay process and are transformed mainly into highly reactive humus substances, which can potentially improve soil health, while mineral fertilisation alone without catch crops favours the stabilisation and sequestration of carbon.

Affinity-based alleviation of dissolved organic matter (DOM) on tetracycline toxicity to photosynthesis of green algae Chlorella vulgaris: roles of hydrophilic and hydrophobic DOM

The environmental fate and toxic effects of antibiotics such as tetracycline (TC) could be influenced by the ubiquitous dissolved organic matter (DOM). However, DOM from different origins has different hydrophilic and hydrophobic properties. It is still unknown the effects of hydrophilic and hydrophobic DOM on the toxic effect of TC. In this study, DOM with hydrophilicity and hydrophobicity was separated and used to investigate their roles in affecting TC toxicity to the photosynthesis of green algae Chlorella vulgaris. Results showed that 10 mg L^-1 TC inhibited the efficiency of photosystem II (PSII) of C. vulgaris using light by hindering electron transfer from Q_A^- to Q_B/Q_B^-, and the O₂ release rate of C. vulgaris decreased by a third after 12-h treatment of 10 mg L^-1 TC, while both hydrophilic and hydrophobic DOM (20 mg L^-1 TOC) alleviated TC toxicity to the photosynthesis of C. vulgaris. In the presence of hydrophilic or hydrophobic DOM, stable complex of TC-hydrophilic DOM or TC-hydrophobic DOM was formed immediately, due to the good affinity of both DOM for TC. Fourier transform infrared spectroscopy result showed that both hydrophilic and hydrophobic DOM could reduce C=O in TC to C-O, and isothermal titration calorimetry result suggested that reactions of both DOM with TC were exothermic (△H < 0) and spontaneous (△G < 0). Thereinto, the reaction constant (K_a) of TC reacting with hydrophobic DOM (K_a=9.70) was higher than that with hydrophilic DOM (K_a=8.93), indicating hydrophobic DOM with more chemical binding sites and accessible fractions for TC. The present study suggests that DOM, especially the hydrophobic DOM, is an important consideration in the environmental impact assessment of antibiotics.

Insights into phenol monomers in response to electron transfer capacity of humic acid during corn straw composting process

Quinone is the important redox functional group for electron transfer capacity (ETC) of humic acid (HA). Lignin, as major component in corn straw, can be decomposed into phenol monomers, then oxidation into quinones for synthesis of HA during composting process. However, it is still unclear that the effects of type and variation characteristics of phenol monomers on redox characteristics of HA during straw composting process. In this study, p-hydroxybenzoic acid (P1), vanillic acid (P2), syringic acid (P3), p-hydroxy benzaldehyde (P4), 4-coumaric acid (P5), 4-hydroxyacetophenone (P6), ferulic acid (P7) and 4-hydroxy-3-methylacetophenone (P8) were recognized and clustered into three groups. The concentration of polyphenol presented a significant downward trend during the straw composting process. Based on the relationships among phenol monomers to ETC, electron donating capacity (EDC), electron accepting capacity (EAC) and quinone, we found that P1, P2, P3, P5 and P7 were significantly related to ETC, EDC and EAC of HA (P < 0.05). Furthermore, NH₄⁺-N and NO₃^--N were the main micro-environmental factors linking to ETC-related phenol monomers and redox characteristics of HA in straw composts (P < 0.05). Finally, two groups of core microflora that promoting the ETC-related phenol monomers and NH₄⁺-N, and ETC-related phenol monomers and NO₃^--N were identified by Mantel test, respectively. This study contributes a new insight for polyphenol way for redox capacity of HA in traditional composting and utilization of straw compost in contaminated environments.

Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin

Although biological nitrogen fixation (BNF) proceeds under mild conditions compared to the energy-intensive Haber–Bosch process, the slow kinetics of BNF necessitate the promotion of BNF activity in its practical application. The BNF promotion using purified nitrogenases and using genetically modified microorganisms has been studied, but these enzymes are unstable and expensive; moreover, designing genetically modified microorganisms is also a difficult task. Alternatively, the BNF promotion in non-modified (wild-type) microorganisms (enriched consortia) with humin has been shown, which is a humic substance insoluble at any pH and functions as an extracellular electron mediator. However, the taxonomic distribution of the diazotrophs promoted by humin, the levels of BNF promotion, and the underlying mechanism in BNF promotion with humin remain unknown. In this study, we show that taxonomically diverse heterotrophic diazotrophs, harboring nifH clusters I, II, and III, promoted their BNF by accepting extracellular electrons from humin, based on the characterization of the individual responses of isolated diazotrophs to humin. The reduced humin increased the acetylene reduction activity of the diazotrophs by 194–916% compared to the level achieved by the organic carbon source, causing adenosine triphosphate (ATP) synthesis in the diazotroph cells without increase in the CO₂ production and direct electron donation to the MoFe protein of the nitrogenase in the cells without relying on the biological electron transfer system. These would result in BNF promotion in the wild-type diazotroph cells beyond their biochemical capacity. This significant promotion of BNF with humin would serve as a potential basis for sustainable technology for greener nitrogen fixation.

Promotion of biological H2 (Bio-H2) production by the nitrogen-fixing anaerobic microbial consortia using humin, a solid-phase humic substance

Dark fermentative biological hydrogen (Bio-H₂) production is expected to be a clean and sustainable H₂ production technology, and the technologies have been studied to increase in the product yield as index. This study achieved high product yields of Bio-H₂ using nitrogen-fixing consortia under nitrogen-deficient conditions with glucose or mannitol as substrate and humin as the extracellular electron mediator: 4.12 mol-H₂/mol-glucose and 3.12 mol-H₂/mol-mannitol. The high Bio-H₂ production was observed under the conditions where both nitrogenase and hydrogenase were active in the presence of humin. Nitrogenase activity was confirmed by acetylene reduction activity and hydrogenase activity by Bio-H₂ production under nitrogenase-inhibiting conditions with NH₄NO₃. [Fe-Fe] hydrogenase detected by a specific PCR and acetate, butyrate, formate, lactate, and pyruvate produced as by-products suggested the involvement of both pyruvate-ferredoxin-oxidoreductase and pyruvate formate lyase pathways in Bio-H₂ production. Humin promoted the Bio-H₂ production beyond the capacity of the consortium, which had reached saturation with the optimum concentrations of glucose and mannitol. Carbon balance suggested the concurrent H₂ consumption by hydrogenotrophic methanogenesis and acetogenesis. Bio-H₂ production of the washed and starved consortium with reduced humin under conditions with or without NH₄NO₃ suggests that humin promoted hydrogenase and nitrogenase activity by donating extracellular electrons. Clostridium and Ruminococcus in the consortia were considered major hydrogen producers. Thus, this study demonstrated the outstanding potential of nitrogen-fixing consortia under nitrogen-deficient conditions with humin as an extracellular electron mediator for dark fermentative Bio-H₂ production with high yields.

Synergistic Effect of Soil Organic Matter and Nanoscale Zero-Valent Iron on Biodechlorination

Nanoscale zero-valent iron (nZVI) provides a promising solution for organochlorine (OC)-contaminated soil remediation. However, the interactions among nZVI, soil organic matter (SOM), and indigenous dechlorinating bacteria are intricate, which may result in unascertained effects on the reductive degradation of OCs and merits specific investigation. Herein, we isolated an indigenous dehalogenation bacterium (Burkholderia ambifaria strain L3) from a paddy soil and further investigated the biodechlorination of pentachlorophenol (PCP) with individual and a combination of SOM and nZVI. In comparison with individual-strain L3 treatment, the cotreatment with nZVI or SOM increased the removal efficiency of PCP from 34.4 to 44.3-54.2% after 15 day cultivation. More importantly, a synergistic effect of SOM and nZVI was observed on the PCP removal by strain L3, and the PCP removal efficiency reached up to 75.3-84.5%. Other than the biodegradation through ortho- and meta-substitution under the individual application of SOM or nZVI, PCP was further biodegraded to 2,4,6-trichlorophenol (TCP) through para-substitution by the isolated bacteria with the cotreatment of SOM and nZVI. The main roles of the nZVI-SOM cotreatment in the biodegradation included the SOM-facilitated microbial proliferation, the nZVI-promoted microbial transformation of SOM, and the induced higher electron transport capacity of redox Fe-PCP biocycling. These findings provide a novel insight into the action of nZVI in environmental remediations.

Optimized isolation method of humin fraction from mineral soil material

Humic substances, including humin fraction, play a key role in the fate of organic and inorganic xenobiotics contaminating the environment. Humin is an important fraction of humic substances, which has been the least studied to date. This is due to the difficulties connected with its isolation that pose a number of methodological problems. Methods of humin fraction isolation can be divided into following main groups: (1) digestion of mineral soil components with HF/HCl followed by alkali extraction of HA and FA; (2) alkali extraction of HA and FA followed by extraction of humin by different organic solvents; and (3) alkali extraction of HA and FA followed by HF/HCl digestion of mineral soil components. Nevertheless, each of these methods has different limitations. We described in detail a useful procedure of humin isolation, in which this fraction was not extracted, but isolated from the soil by removing its soluble organic and mineral components. A modified method of HA and FA extraction with 0.1 M NaOH, according to the International Humic Substances Society, was used in the first step. Then, the mineral components in the residue were digested with the 10% HF/HCl. Unlike the procedures oriented to increase the concentration of organic matter, samples were treated several times with the HF/HCl mixture until the mineral fraction was almost completely digested. The main assumption of the method modification was to obtain the highest yield with the lowest possible ash content, but without affecting humin chemical structure. The results showed that the proposed procedure is characterized by a high efficiency and recovery and, therefore, it can be used to isolate high amounts of humin from soil.

Effect of Humin and Chemical Factors on CO2-Fixing Acetogenesis and Methanogenesis

Acetogenesis and methanogenesis have attracted attention as CO₂-fixing reactions. Humin, a humic substance insoluble at any pH, has been found to assist CO₂-fixing acetogenesis as the sole electron donor. Here, using two CO₂-fixing consortia with acetogenic and methanogenic activities, the effect of various parameters on these activities was examined. One consortium utilized humin and hydrogen (H₂) as electron donors for acetogenesis, either separately or simultaneously, but with a preference for the electron use from humin. The acetogenic activity was accelerated 14 times by FeS at 0.2 g/L as the optimal concentration, while being inhibited by MgSO₄ at concentration above 0.02 g/L and by NaCl at concentrations higher than 6 g/L. Another consortium did not utilize humin but H₂ as electron donor, suggesting that humin was not a universal electron donor for acetogenesis. For methanogenesis, both consortia did not utilize extracellular electrons from humin unless H₂ was present. The methanogenesis was promoted by FeS at 0.2 g/L or higher concentrations, especially without humin, and with NaCl at 2 g/L or higher concentrations regardless of the presence of humin, while no significant effect was observed with MgSO₄. Comparative sequence analysis of partial 16S rRNA genes suggested that minor groups were the humin-utilizing acetogens in the consortium dominated by Clostridia, while Methanobacterium was the methanogen utilizing humin with H₂.

Zeolitic imidazolate framework-derived porous carbon enhances methanogenesis by facilitating interspecies electron transfer: Understanding fluorimetric and electrochemical responses of multi-layered extracellular polymeric substances

Modulating microbial electron transfer during anaerobic digestion can significantly improve syntrophic interactions for enhanced biogas production. As a carbonaceous conductive material, zeolite imidazolate framework-67 (ZIF-67)-derived porous carbon (PC) was hypothesized to act as a microbial electron transfer highway and assessed with respect to understanding the fluorimetric and electrochemical responses of multilayered extracellular polymeric substances (EPS). The highest biomethane yield (614.0 mL/g) from ethanol was achieved in the presence of 100 mg/L PC prepared at a carbonization temperature of 800 °C (PC-800), which was 28.2% higher than that without PC addition. Electrochemical analysis revealed that both the redox peak currents and conductivity of the methanogenic sludge increased, while the free charge transfer resistance decreased with PC-800 addition. The conductive PC-800 potentially functioned as an abiotic electron conduit to promote direct interspecies electron transfer, thereby resulting in decreased expression of functional genes associated with electrically conductive pili (e-pili) and hemeproteins. Additionally, PC-800 stimulated the secretion of redox-active humic substances (HSs), and excitation emission matrix spectra analysis indicated that the largest increase in percent fluorescence response of HSs occurred in the tightly bound EPS (TB-EPS) with addition of PC-800. This was attributed to the strong complexation ability of PC-800 particles to hydroxyl/carboxylic/phenolic moieties of HSs contained in the TB-EPS. Microbial analysis revealed that syntrophic/exoelectrogenic bacteria such as Pelotomaculum and Syntrophomonas, as well as hydrogenotrophic/electrotrophic methanogens such as Methanoculleus and Methanobacterium, were enriched in methanogenic sludge with adding PC-800. This study provided comprehensive insights for understanding the interactions among ZIF-derived PC, methanogenic microorganisms and their multilayered EPS.

Enhanced low-temperature denitrification by microbial consortium using solid-phase humin

Reducing the use of liquid organic carbon electron donors during biostimulation of heterotrophic denitrification is critical for sustainable groundwater remediation. Solid-phase humin isolated from natural sources can provide a cost-effective alternative to classical electron donors. In this study, the low-temperature denitrification capacity of an acetate-fed microbial community was enhanced using humin at 20 °C and 10 °C. These enhancements were not caused by faster acetate consumption and greater bacterial growth with the addition of humin. Estimation of the electron balance and first-order kinetics suggested that the enhancement in denitrification occurred mainly after acetate exhaustion. Humin may therefore have acted as an additional electron donor for the denitrifying microbial community, with the reduced quinone group in humin potentially responsible for electron donation. The addition of humin increased the richness and diversity of the denitrifying microbial community, in which Dechloromonas spp. played a critical role. Given the prevalence of humin and denitrifiers using humic substances, our results have important implications in the bioremediation of nitrate-contaminated groundwater using less liquid organic carbon electron donors.

Humin: No longer inactive natural organic matter

The discovery of the function of humin (HM), an insoluble fraction of humic substances (HSs), as an extracellular electron mediator (EEM) in 2012 has provided insight into the role of HM in nature and its potential for in situ bioremediation of pollutants. The EEM function is thought to enable the energy network of various microorganisms using HM. Recently, a number of studies on the application of HM as EEM in anaerobic microbial cultures have been conducted. Even so, there is a need for developing a holistic view of HM EEM function. In this paper, we summarize all the available information on the properties of HM EEM function, its applications, possible redox-active structures, and the interaction between HM and microbial cells. We also suggest scopes for future HM research.

Promotion of biological nitrogen fixation activity of an anaerobic consortium using humin as an extracellular electron mediator

Nitrogen fertiliser is manufactured using the industrial Haber–Bosch process, although it is extremely energy-consuming. One sustainable alternative technology is the electrochemical promotion of biological nitrogen fixation (BNF). This study reports the promotion of BNF activity of anaerobic microbial consortia by humin, a solid-phase humic substance, at any pH, functioning as an extracellular electron mediator, to levels of 5.7–11.8 times under nitrogen-deficient conditions. This was evidenced by increased acetylene reduction activity and total nitrogen content of the consortia. Various humins from different origins promoted anaerobic BNF activity, although the degree of promotion differed. The promotion effected by humin differed from the effects of chemical reducing agents and the effects of supplemental micronutrients and vitamins. The promotion of anaerobic BNF activity by only reduced humin without any other electron donor suggested that humin did not serve as organic carbon source but as extracellular electron mediator, for electron donation to the nitrogen-fixing microorganisms. The next generation sequencing (NGS) of partial 16S rRNA genes showed the predominance of Clostridiales (Firmicutes) in the consortia. These findings suggest the effectiveness of humin as a solid-phase extracellular electron mediator for the promotion of anaerobic BNF activity, potentially to serve for the basis for a sustainable technology.

Microbial community response to the toxic effect of pentachlorophenol in paddy soil amended with an electron donor and shuttle

Understanding the degradation of pentachlorophenol (PCP) by indigenous microorganisms stimulated by an electron donor and shuttle in paddy soil, and the influences of PCP/electron donor/shuttle on the native microbial community are important for biodegradation and ecological and environmental safety. Previous studies focused on the kinetics and the microbial actions of PCP degradation, however, the effects of toxic and antimicrobial PCP and electron donor/shuttle on the microbial community diversity and composition in paddy soil are poorly understood. In this study, the effects of PCP, an electron donor (lactate), and the electron shuttle (anthraquinone-2, 6-disulfonate, AQDS) on the microbial community in paddy soil were investigated. The results showed that the presence of PCP reduced the microbial diversity compared to the control during PCP degradation, while increased the microbial diversity was observed in response to lactate and AQDS. The addition of PCP stimulated the microorganisms involved in PCP dechlorination, including Clostridium, Desulfitobacterium, Pandoraea, and unclassified Veillonellaceae, which were dormant in raw soil without PCP stress. In all of the treatments with PCP, the addition of lactate or AQDS enhanced PCP dechlorination by stimulating the growth of functional groups involved in PCP dechlorination and by changing the microbial community during dechlorination process. The microbial community tended to be uniform after complete PCP degradation (28 days). However, when lactate and AQDS were present simultaneously in PCP-contaminated soil, lactate acted as a carbon source or electron donor to promote the activities of microbial community, and AQDS changed the redox potential because of the production of reduced AQDS. These findings enhance our understanding of the effect of PCP and a biostimulation method for PCP biodegradation in soil ecosystems at the microbial community level, and suggest the appropriate selection of an electron donor/shuttle for accelerating the bioremediation of PCP-contaminated soils.

Mechanism of Cr(VI) reduction by humin: Role of environmentally persistent free radicals and reactive oxygen species

Humic substances, especially humin (HM) in its solid phase, is considered to be the main electron donor during the reduction of Cr(VI) in the environment. This work explores the reaction mechanism between Cr(VI) and the functional groups contained in HM, environmentally persistent free radicals (EPFRs), and reactive oxygen species (ROS). We examine the changes in the functional groups, EPFRs, and ROS on HM during the reaction, and inhibit the production of ROS to verify their effect. Our results demonstrate that the carboxyl and phenolic hydroxyl groups contained in HM are consumed during the reaction. The phenolic hydroxyl group can directly react with Cr(VI) as an electron donor, and can also transfer electrons to molecular oxygen to generate superoxide radicals to reduce Cr(VI). EPFRs also exhibit the same reaction pathway. The molecular oxygen in the solution gains electrons to generate O₂^·-, which further reacts with Cr(VI) to reduce it to Cr(III). The production and effect of active oxygen are verified by removing oxygen from the solution. In this study, the contribution of active oxygen to the reduction of Cr(VI) is approximately 30%. This study provides theoretical support for revealing the effects of humic substances on the conversion of Cr(VI).

Humin Assists Reductive Acetogenesis in Absence of Other External Electron Donor

The utilization of extracellular electron transfer by microorganism is highly engaging for remediation of toxic pollutants under “energy-starved” conditions. Humin, an organo-mineral complex of soil, has been instrumental as an external electron mediator for suitable electron donors in the remediative works of reductive dehalogenation, denitrification, and so forth. Here, we report, for the first time, that humin assists microbial acetogenesis as the extracellular electron donor using the electron acceptor CO2. Humin was obtained from Kamajima paddy soil, Japan. The anaerobic acetogenic consortium in mineral medium containing CO2/HCO3− as the inorganic carbon source used suspended humin as the energy source under mesophilic dark conditions. Retardation of acetogenesis under the CO2-deficient conditions demonstrated that humin did not function as the organic carbon source but as electron donor in the CO2-reducing acetogenesis. The consortium with humin also achieved anaerobic dechlorination with limited methanogenic activity. Total electron-donating capacity of humin was estimated at about 87 µeeq/g-humin. The metagenomic sequencing of 16S rRNA genes showed the predominance of Firmicutes (71.8 ± 2.5%) in the consortium, and Lachnospiraceae and Ruminococcaceae were considered as the CO2-reducing acetogens in the consortium. Thus, microbial fixation of CO2 using humin introduces new insight to the holistic approach for sustainable treatment of contaminants in environment.

Biowaste-source-dependent synthetic pathways of redox functional groups within humic acids favoring pentachlorophenol dechlorination in composting process

Humic acids (HAs) can function as electron mediators for contaminants transformation in different environments. The humus respiration can facilitate pentachlorophenol (PCP) dechlorination during different biowastes composting. However, different characteristics of synthetic pathways of redox functional groups within HAs during different biowastes composting have never been characterized. Herein, we assessed the synthetic pathways of redox functional groups within HAs from protein-, lignocellulose-, and lignin-rich composts that facilitated the microbially reductive dechlorination of PCP, respectively. The results show that the aromatic systems are the major electron-accepting moieties of HAs and function as electron shuttles to facilitate the PCP dechlorination. Amino acid and reducing sugar are the major precursors for the synthesis of redox functional groups within HAs in protein-rich composts, and polyphenols and amino acids are discerned as the significant components to synthesize redox functional groups of HAs in lignocellulose- and lignin-rich composts. Seven groups of bacterial communities based on relationships among remarkable precursors, key bacterial communities, and redox functional groups within HAs are classified as participants in the precursors' catabolism and aromatic system' anabolism. Furthermore, the significant environmental factors on the synthetic pathways of redox functional groups within HAs in composting are confirmed by structural equation models. Conclusively, the regulating methods for promoting PCP dechlorination by HAs during different biowastes composting are proposed. Our results can help in understanding the distinct formative mechanisms of redox functional groups within HAs during different biowastes composting, providing insights into a classification-oriented approach for recycling utilization of different biowastes.

Significant contribution of metastable particulate organic matter to natural formation of silver nanoparticles in soils

Particulate organic matter (POM) is distributed worldwide in high abundance. Although insoluble, it could serve as a redox mediator for microbial reductive dehalogenation and mineral transformation. Quantitative information on the role of POM in the natural occurrence of silver nanoparticles (AgNPs) is lacking, but is needed to re-evaluate the sources of AgNPs in soils, which are commonly considered to derive from anthropogenic inputs. Here we demonstrate that POM reduces silver ions to AgNPs under solar irradiation, by producing superoxide radicals from phenol-like groups. The contribution of POM to the naturally occurring AgNPs is estimated to be 11-31%. By providing fresh insight into the sources of AgNPs in soils, our study facilitates unbiased assessments of the fate and impacts of anthropogenic AgNPs. Moreover, the reducing role of POM is likely widespread within surface environments and is expected to significantly influence the biogeochemical cycling of Ag and other contaminants that are reactive towards phenol-like groups.

Anaerobic Dechlorination by a Humin-Dependent Pentachlorophenol-Dechlorinating Consortium under Autotrophic Conditions Induced by Homoacetogenesis

Anoxic aquifers suffer from energy limitations due to the unavailability of organic substrates, as dictated by hydrogen (H2) for various electron-accepting processes. This deficiency often results in the accumulation of persistent organic pollutants, where bioremediation using organic compounds often leads to secondary contamination. This study involves the reductive dechlorination of pentachlorophenol (PCP) by dechlorinators that do not use H2 directly, but rather through a reduced state of humin-a solid-phase humic substance-as the extracellular electron donor, which requires an organic donor such as formate, lactate, etc. This shortcoming was addressed by the development of an anaerobic mixed culture that was capable of reductively dechlorinating PCP using humin under autotrophic conditions induced by homoacetogenesis. Here, H2 was used for carbon-dioxide fixation to acetate; the acetate produced was used for the reduction of humin; and consequently used for dechlorination through reduced humin. The 16SrRNA gene sequencing analysis showed Dehalobacter and Dehalobacterium as the possible dechlorinators, while Clostridium and Oxobacter were identified as the homoacetogens. Thus, this work contributes to the development of an anaerobic consortium that balanced H2 dependency, where efficiency of humin reduction extends the applicability of anaerobic microbial remediation in aquifers through autotrophy, syntrophy, and reductive dechlorination.

Accelerating effects of humin on sulfide-mediated azo dye reduction

As an important fraction of humic substances, humin has been found capable of stimulating bioreduction reactions. However, whether humin could promote abiotic reduction and the effects of coexisting soluble humic substance and insoluble mineral remained unsolved. In this study, a humin sample was isolated from a paddy soil. Cyclic voltammetry, electron paramagnetic resonance, Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy analyses of the humin indicated the existence of redox-active quinone moieties and other oxygen-containing groups. The humin could be reduced by sulfide and its presence stimulated the abiotic reduction of acid red 27 (AR27) and four other azo dyes by sulfide. In the presence of 100-1000 mg/L intact humin, the sulfide-mediated AR27 reduction efficiency in 7 d was enhanced from 56.3% to 92.5%. The stimulating behavior of intact humin was observed for 100-300 mg/L AR27 and increased with the increase of sulfide concentration (1.2-3.0 mM). Much higher stimulating effects were found with the presence of humin pre-reduced by sulfide. Moreover, for sulfide-mediated AR27 reduction, the coexistence of humin (500 mg/L) and humic acid (10-30 mg/L) or Wyoming sodium-montmorillonite (SWy-2, 1-4 g/L) led to better promotion activities than the presence of single component. And synergistic promotion of sulfide-mediated AR27 reduction was observed with coexisting humin and SWy-2 due to enhanced Fe(II) production. These findings extended our understanding of the influence of humin on reductive transformation of pollutants in the environment.

Polarity and Molecular Weight of Compost-Derived Humic Acids Impact Bio-dechlorination of Pentachlorophenol

Compost-derived humic acids (HAs) as cheap soil conditioners have potential to facilitate pentachlorophenol (PCP) bio-dechlorination but lack proof and studies. To clarify this, PCP bio-dechlorination mediated by compost-derived HAs under Fe(III) reduction conditions was investigated. Reverse phase high-performance liquid chromatography and high-performance size exclusion chromatography were employed to identify the functional components within compost-derived HAs. Our results showed that compost-derived HAs facilitated the bio-dechlorination of PCP under Fe(III) reduction conditions, and four kinds of byproducts were detected during the process. The relatively hydrophilic and high molecular weight (MW) components within compost-derived HAs presented significant associations with the concentration of byproducts from bio-dechlorination of PCP in Fe₂O₃ reduction conditions. In contrast, the hydrophobic and low MW components were the main functional components for PCP bio-dechlorination in Fe₃O₄ reduction environment. These findings clarified the effects of polarity and MW of compost-derived HAs on PCP bio-dechlorination, giving clues to optimize composting technology to utilize compost products for in situ contamination remediation of paddy soil.

Characterization of biochars derived from different materials and their effects on microbial dechlorination of pentachlorophenol in a consortium

The properties of biochars derived from different raw materials (rice husk, bamboo, caragana, and garbage) and their effects on the microbial reductive dechlorination of pentachlorophenol (PCP) were investigated to understand how biochars influence the biotransformation of environmental pollutants. The results indicated that only caragana-derived biochar showed stable electron transfer activity for PCP dechlorination. Electro(chemical) analyses revealed that caragana biochar had the highest electrical conductivity (EC) (2.22 × 10⁶ μS cm⁻¹), while those of the other biochars were <1500 μS cm⁻¹. The electron transfer capacities were within the ranges of 61.63–155.83 μmol e⁻ g⁻¹. Cyclic voltammetry analysis suggested that there were no obvious redox peaks for the biochars, while the Fourier transform infrared analysis showed similar transmission spectra with variable absorption intensity; this suggested that all biochars possessed similar structures and functional group classes and the enhancement of PCP dechlorination was not attributable to the redox reaction. Overall, the beneficial effects of caragana biochar on PCP dechlorination depended on the EC rather than the redox functional groups, possibly because high EC values enabled the highest electron transfer, and thus resulted in the greatest promotion of reductive dechlorination activity.

The properties of four biochars and their effects on the microbial reductive dechlorination of PCP were investigated.

Humin as an External Electron Mediator for Microbial Pentachlorophenol Dechlorination: Exploration of Redox Active Structures Influenced by Isolation Methods

Humin (HM) has been reported to function as an external electron mediator (EEM) in various microbial reducing reactions. In this study, the effect of isolation methods on EEM functionality and the chemical/electrochemical structures of HM were examined based on the correlation between dechlorination rates in the anaerobic HM-dependent pentachlorophenol (PCP)-dechlorinating consortium and the chemical/electrochemical structures of HM. A lack of PCP dechlorination activity suggested no EEM function in the HM samples prepared as a soluble fraction in dimethyl sulfoxide and sulfuric acid (which did not contain any electric capacitance). Other HM samples exhibited EEM functionality as shown by the dechlorination activity ranging from 0.55 to 3.48 (µmol Cl⁻) L⁻¹d⁻¹. The comparison of dechlorination activity with chemical structural characteristics suggested that HM with EEM functionalities had predominantly aliphatic and carbohydrate carbons with the partial structures C=O, O=C–N, and O=C–O. EEM functionality positively correlated with the proportion of O=C–N and O=C–O, suggesting an association between peptidoglycan structure and EEM functionality. The lack of detection of a quinone structure in one HM sample with EEM functionality and a negative correlation with aromatic or C=C carbon suggested that the mechanism containing quinone structures is a minor component for the functionality of EEM.

Humic substances, their microbial interactions and effects on biological transformations of organic pollutants in water and soil: A review

Depicted as large polymers by the traditional model, humic substances (HS) tend to be considered resistant to biodegradation. However, HS should be regarded as supramolecular associations of rather small molecules. There is evidence that they can be degraded not only by aerobic but also by anaerobic bacteria. HS presence alters biological transformations of organic pollutants in water and soil. HS, including humin, have a great potential for an application in aerobic and anaerobic wastewater treatment as well as in bioremediation. Black carbon materials, including char (biochar) and activated carbon (AC), long recognized effective sorbents, have been recently discovered to act as effective redox mediators (RM), which may significantly accelerate degradation of organic pollutants in a way similar to HS. Humic-like coating on the biochar surface has been identified. Explanation of mechanisms and possibility of applications of black carbon materials have only started to be explored. Results of many original and review papers, presented and discussed in this article, show an enormous potential for an interesting, multidisciplinary research as well as for a development of new, green technologies for biological wastewater treatment and bioremediation. Future research areas have been suggested.

Redox Structures of Humic Acids Derived From Different Sediments and Their Effects on Microbial Reduction Reactions

Herein, we investigated the chemical, electrochemical, and spectroscopic characteristics of humic acids (HAs) extracted from sediments of different origin [Ling Qiao river, Xi Xi wetland, Qi Zhen lake (QZ), and Hu Zhou pond in Zhejiang province, China], paying particular attention to their role in the enhancement of nitrate and FeOOH reduction. Notably, the highest C/N ratio (16.16), O/C ratio (1.89), and Fe content (11.57 g kg^-1 sample) were observed for HAs extracted from QZ sediment. Cyclic voltammetry analyses confirmed that all HAs contained redox-active groups and exhibited redox potentials between -0.36 and -0.28 V vs. the standard hydrogen electrode. All HAs showed similar Fourier transform infrared spectra with variable absorption intensity, the spectra verified the presence of aromatic C=C, C–H, and C=O of quinone ketones group in HAs. Electron spin resonance suggested that quinone moieties within HAs are the redox-active centers. All HAs promoted the microbial reduction of nitrate and amorphous FeOOH by Shewanella oneidensis strain MR-1, achieving high nitrate reduction extents of 79–98.4%, compared to the biotic and abiotic control values of 29.6 and 0.006%, respectively. The corresponding extents of Fe(II) production equaled 43.25–60.5%, exceeding those of biotic and abiotic controls (28.5 and 0.005%, respectively). In addition to the highest C/N, O/C ratio, and Fe content, HA extracted from QZ sediment also exhibited the highest nitrate and FeOOH reduction performances. Although the proportion of organic redox-active carbon is small, the potential electron-mediating ability is not ignorable. HAs are redox active for enhancing microbial reduction of nitrate and amorphous FeOOH regardless of the location or texture of parent sediments, implying their great potential for acting as redox mediator in enhancing multiple microbial reduction, thereby affecting various biogeochemical processes (i.e., iron cycle, nitrogen cycle, etc.) as well as in situ remediation in anaerobic environment.

Effect of long-term fertilization on humic redox mediators in multiple microbial redox reactions

This study investigated the effects of different long-term fertilizations on humic substances (HSs), humic acids (HAs) and humins, functioning as redox mediators for various microbial redox biotransformations, including 2,2',4,4',5,5'- hexachlorobiphenyl (PCB₁₅₃) dechlorination, dissimilatory iron reduction, and nitrate reduction, and their electron-mediating natures. The redox activity of HSs for various microbial redox metabolisms was substantially enhanced by long-term application of organic fertilizer (pig manure). As a redox mediator, only humin extracted from soils with organic fertilizer amendment (OF-HM) maintained microbial PCB₁₅₃ dechlorination activity (1.03 μM PCB₁₅₃ removal), and corresponding HA (OF-HA) most effectively enhanced iron reduction and nitrate reduction by Shewanella putrefaciens. Electrochemical analysis confirmed the enhancement of their electron transfer capacity and redox properties. Fourier transform infrared analysis showed that C=C and C=O bonds, and carboxylic or phenolic groups in HSs might be the redox functional groups affected by fertilization. This research enhances our understanding of the influence of anthropogenic fertility on the biogeochemical cycling of elements and in situ remediation ability in agroecosystems through microorganisms' metabolisms.

Response of humic-reducing microorganisms to the redox properties of humic substance during composting

Humic substance (HS) could be utilized by humus-reducing microorganisms (HRMs) as the terminal acceptors. Meanwhile, the reduction of HS can support the microbial growth. This process would greatly affect the redox conversion of inorganic and organic pollutants. However, whether the redox properties of HS lined with HRMs community during composting still remain unclear. This study aimed to assess the relationships between the redox capability of HS [i.e. humic acids (HA) and fulvic acids (FA)] and HRMs during composting. The results showed that the changing patterns of electron accepting capacity and electron donating capacity of HS were diverse during seven composting. Electron transfer capacities (ETC) of HA was significantly correlated with the functional groups (i.e. alkyl C, O-alkyl C, aryl C, carboxylic C, aromatic C), aromaticity and molecular weight of HA. Aromatic C, phenols, aryl C, carboxylic C, aromaticity and molecular weight of HS were the main structuralfeatures associated with the ETC of FA. Ten key genera of HRMs were found significantly determine these redox-active functional groups of HS during composting, thus influencing the ETC of HS in composts. In addition, a regulating method was suggested to enhance the ETC of HS during composting based on the relationships between the key HRMs and redox-active functional groups as well as environmental variables.

A three-act play: pentachlorophenol threats to the cork oak forest soils mycobiome

Atmospheric release of persistent organic pollutants (POPs) constitutes a silent threat through chronic contamination of soils at global scale; yet fundamental understanding of their occurrence, sources and fate is still largely lacking. Similar to a three act play, this review comprises Setup, Confrontation and Resolution. The first emphasises the eighty years of the history of pentachlorophenol (PCP) usage, only recently classified as POP. The second focus on active sources of PCP pollution, including inside cork oak forests in N.W. Tunisia; a threat partially neutralised by the soil microbial diversity, especially fungi. As Resolution, the need for improved knowledge on the global distribution and impacts of PCP in soil microbial diversity as means to preserve the multi-functionality of terrestrial ecosystem is emphasised.

Emerging investigator series: dual role of organic matter in the anaerobic degradation of triclosan

Triclosan (TCS), one of the most widely used antimicrobial agents, has been listed among the top 10 contaminants in US rivers. Environmental persistence, endocrine disruption effects, and the antibiotic resistance induction capacity of TCS attract interest in its environmental fate and degradation. Herein, we found that TCS can be anaerobically degraded at pH 9 by a metal-reducing bacterium, Shewanella putrefaciens CN32. The degradation was substantially facilitated by low-concentration (0-15 mg C per L) organic matter (OM) extracted from a peat soil, whereas TCS degradation was inhibited by further increased concentration (15-100 mg C per L) of OM. OM acted as both an electron shuttle and sorbent in regulating the degradation of TCS. The novel dual role of ubiquitous OM in the reaction of TCS governs the environmental degradation and persistence of TCS. Our study highlights the effects of OM on the reaction of emerging trace organic pollutants, with implications on their engineering treatment and environmental risk regulation.

Effect of humins from different sediments on microbial degradation of 2,2′,4,4′,5,5′-hexachlorobiphenyl (PCB153), and their polyphasic characterization

This study was carried out to evaluate the activity of humins from four different sediments as electron mediators for microbial reductive dechlorination of PCB₁₅₃and to analyze the electron-mediating properties of humins.