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Kumar A, Naroju SP, Kumari N, Arsey S, Kumar D, Gubre DF, Roychowdhury A, Tyagi S, Saini P. The role of drought response genes and plant growth promoting bacteria on plant growth promotion under sustainable agriculture: A review. Microbiol Res 2024; 286:127827. [PMID: 39002396 DOI: 10.1016/j.micres.2024.127827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 06/28/2024] [Accepted: 06/30/2024] [Indexed: 07/15/2024]
Abstract
Drought is a major stressor that poses significant challenges for agricultural practices. It becomes difficult to meet the global demand for food crops and fodder. Plant physiology, physico-chemistry and morphology changes in plants like decreased photosynthesis and transpiration rate, overproduction of reactive oxygen species, repressed shoot and root shoot growth and modified stress signalling pathways by drought, lead to detrimental impacts on plant development and output. Coping with drought stress requires a variety of adaptations and mitigation techniques. Crop yields could be effectively increased by employing plant growth-promoting rhizobacteria (PGPR), which operate through many mechanisms. These vital microbes colonise the rhizosphere of crops and promote drought resistance by producing exopolysaccharides (EPS), 1-aminocyclopropane-1-carboxylate (ACC) deaminase and phytohormones including volatile compounds. The upregulation or downregulation of stress-responsive genes causes changes in root architecture due to acquiring drought resistance. Further, PGPR induces osmolyte and antioxidant accumulation. Another key feature of microbial communities associated with crops includes induced systemic tolerance and the production of free radical-scavenging enzymes. This review is focused on detailing the role of PGPR in assisting plants to adapt to drought stress.
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Affiliation(s)
- Ashok Kumar
- School of Life Science and Technology, IIMT University, Meerut, Uttar Pradesh, India.
| | - Sai Prakash Naroju
- Department of Agricultural and Environmental Sciences, Tennessee State University, Nashville, USA
| | - Neha Kumari
- Department of Genetics and Plant Breeding (Plant Biotechnology), Institute of Agricultural Sciences, Rajiv Gandhi South Campus, Banaras Hindu University, Mirzapur, Uttar Pradesh, India
| | - Shivani Arsey
- Department of Genetics and Plant Breeding (Plant Biotechnology), Institute of Agricultural Sciences, Rajiv Gandhi South Campus, Banaras Hindu University, Mirzapur, Uttar Pradesh, India
| | - Deepak Kumar
- Plant Biotechnology, Gujarat Biotechnology University, Near Gujarat International Finance Tec (GIFT)-City, Gandhinagar, Gujarat, India
| | - Dilasha Fulchand Gubre
- Department of Crop Improvement, Indian Council of Agricultural Research Indian Institute of Soybean Research, Indore, Madhya Pradesh, India
| | - Abhrajyoti Roychowdhury
- Department of Microbiology, University of North Bengal, Raja Rammohunpur, West Bengal, India
| | - Sachin Tyagi
- School of Life Science and Technology, IIMT University, Meerut, Uttar Pradesh, India
| | - Pankaj Saini
- School of Life Science and Technology, IIMT University, Meerut, Uttar Pradesh, India
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Lee SW, Lim JM, Lee GM, Park JH, Seralathan KK, Oh BT. Evaluation of Lentilactobacillus parafarraginis A6-2 strain for aluminum removal and anti-inflammatory effects: implications for alleviating Al toxicity. J Appl Microbiol 2023; 134:lxad271. [PMID: 37989872 DOI: 10.1093/jambio/lxad271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 09/30/2023] [Accepted: 11/20/2023] [Indexed: 11/23/2023]
Abstract
AIM To assess the effectiveness of Lentilactobacillus parafarraginis A6-2 cell lysate for the removal of aluminum (Al), which induces neurotoxicity, and its protective effect at cellular level. METHODS AND RESULTS The cell lysate of the selected L. parafarraginis A6-2 strain demonstrated superior Al removal compared to live or dead cells. The Al removal efficiency of L. parafarraginis A6-2 cell lysate increased with decreasing pH and increasing temperature, primarily through adsorption onto peptidoglycan. Neurotoxicity mitigation potential of L. parafarraginis A6-2 was evaluated using C6 glioma cells. C6 cells exposed with increasing concentration of Al led to elevated toxicity and inflammation, which were gradually alleviated upon treatment with L. parafarraginis A6-2. Moreover, Al-induced oxidative stress in C6 cells showed a concentration-dependent reduction upon treatment with L. parafarraginis A6-2. CONCLUSIONS This study demonstrated that L. parafarraginis A6-2 strain, particularly in its lysate form, exhibited enhanced capability for Al removal. Furthermore, it effectively mitigated Al-induced toxicity, inflammation, and oxidative stress.
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Affiliation(s)
- Se-Won Lee
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
| | - Jeong-Muk Lim
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
| | - Gwang-Min Lee
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
| | - Jung-Hee Park
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
| | - Kamala-Kannan Seralathan
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
| | - Byung-Taek Oh
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan, Jeonbuk 54596, South Korea
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Zhou M, Yuan Y, Lin J, Lin L, Zhou J, Li Z. γ-Aminobutyric Acid Priming Alleviates Acid-Aluminum Toxicity to Creeping Bentgrass by Regulating Metabolic Homeostasis. Int J Mol Sci 2023; 24:14309. [PMID: 37762612 PMCID: PMC10532299 DOI: 10.3390/ijms241814309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 09/11/2023] [Accepted: 09/15/2023] [Indexed: 09/29/2023] Open
Abstract
Aluminum (Al) toxicity is a major limiting factor for plant growth and crop production in acidic soils. This study aims to investigate the effects of γ-aminobutyric acid (GABA) priming on mitigating acid-Al toxicity to creeping bentgrass (Agrostis stolonifera) associated with changes in plant growth, photosynthetic parameters, antioxidant defense, key metabolites, and genes related to organic acids metabolism. Thirty-seven-old plants were primed with or without 0.5 mM GABA for three days and then subjected to acid-Al stress (5 mmol/L AlCl3·6H2O, pH 4.35) for fifteen days. The results showed that acid-Al stress significantly increased the accumulation of Al and also restricted aboveground and underground growths, photosynthesis, photochemical efficiency, and osmotic balance, which could be effectively alleviated by GABA priming. The application of GABA significantly activated antioxidant enzymes, including superoxide dismutase, peroxidase, catalase, and ascorbate peroxidase, to reduce oxidative damage to cells under acid-Al stress. Metabolomics analysis demonstrated that the GABA pretreatment significantly induced the accumulation of many metabolites such as quinic acid, pyruvic acid, shikimic acid, glycine, threonine, erythrose, glucose-6-phosphate, galactose, kestose, threitol, ribitol, glycerol, putrescine, galactinol, and myo-inositol associated with osmotic, antioxidant, and metabolic homeostases under acid-Al stress. In addition, the GABA priming significantly up-regulated genes related to the transportation of malic acid and citric acid in leaves in response to acid-Al stress. Current findings indicated GABA-induced tolerance to acid-Al stress in relation to scavenging of reactive oxygen species, osmotic adjustment, and accumulation and transport of organic metabolites in leaves. Exogenous GABA priming could improve the phytoremediation potential of perennial creeping bentgrass for the restoration of Al-contaminated soils.
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Affiliation(s)
| | | | | | | | | | - Zhou Li
- College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu 611130, China; (M.Z.); (Y.Y.); (L.L.); (J.Z.)
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4
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Wu Y, Qiu CW, Cao F, Liu L, Wu F. Identification and characterization of long noncoding RNAs in two contrasting olive (Olea europaea L.) genotypes subjected to aluminum toxicity. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 202:107906. [PMID: 37562203 DOI: 10.1016/j.plaphy.2023.107906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/30/2023] [Accepted: 07/24/2023] [Indexed: 08/12/2023]
Abstract
Aluminum (Al) toxcity is considered to be the primary factor limiting crop productivity in acidic soil. Many studies indicate that long non-coding RNAs (lncRNAs) fulfil a crucial role in plant growth and responses to different abiotic stress. However, identification and characterization of lncRNAs responsive to Al stress at a genome-wide level in olive tree is still lacking. Here, we performed comparative analysis on lncRNA transcriptome between Zhonglan (an Al-tolerant genotype) and Frantoio selezione (Al-sensitive) responding to Al exposure. A total of 19,498 novel lncRNAs were identified from both genotypes, and 6900 lncRNA-target pairs were identified as cis-acting and 2311 supposed to be trans-acting. Among them, 2076 lncRNAs were appraised as Al tolerance-associated lncRNAs due to their distinctly genotype-specific expression profiles under Al exposure. Target prediction and functional analyses revealed several key lncRNAs are related to genes encoding pectinesterases, xyloglucan endotransglucosylase/hydrolase, WRKY and MYB transcription factors, which mainly participate in the modification of cell wall for Al tolerance. Furthermore, gene co-expression network analysis showed 8 lncRNA-mRNA-miRNA modules participate in transcriptional regulation of downstream Al resistant genes. Our findings increased our understanding about the function of lncRNAs in responding to Al stress in olive and identified potential promising lncRNAs for further investigation.
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Affiliation(s)
- Yi Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou, 310058, PR China
| | - Cheng-Wei Qiu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou, 310058, PR China
| | - Fangbin Cao
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou, 310058, PR China
| | - Li Liu
- College of Cooperative Economics, Zhejiang Economic and Trade Polytechnic, Hangzhou, 310018, PR China.
| | - Feibo Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou, 310058, PR China.
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Belimov AA, Shaposhnikov AI, Azarova TS, Yuzikhin OS, Sekste EA, Safronova VI, Tikhonovich IA. Aluminum-Immobilizing Rhizobacteria Modulate Root Exudation and Nutrient Uptake and Increase Aluminum Tolerance of Pea Mutant E107 ( brz). PLANTS (BASEL, SWITZERLAND) 2023; 12:2334. [PMID: 37375958 DOI: 10.3390/plants12122334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 06/11/2023] [Accepted: 06/12/2023] [Indexed: 06/29/2023]
Abstract
It is well known that plant-growth-promoting rhizobacteria (PGPRs) increase the tolerance of plants to abiotic stresses; however, the counteraction of Al toxicity has received little attention. The effects of specially selected Al-tolerant and Al-immobilizing microorganisms were investigated using pea cultivar Sparkle and its Al-sensitive mutant E107 (brz). The strain Cupriavidus sp. D39 was the most-efficient in the growth promotion of hydroponically grown peas treated with 80 µM AlCl3, increasing the plant biomass of Sparkle by 20% and of E107 (brz) by two-times. This strain immobilized Al in the nutrient solution and decreased its concentration in E107 (brz) roots. The mutant showed upregulated exudation of organic acids, amino acids, and sugars in the absence or presence of Al as compared with Sparkle, and in most cases, the Al treatment stimulated exudation. Bacteria utilized root exudates and more actively colonized the root surface of E107 (brz). The exudation of tryptophan and the production of IAA by Cupriavidus sp. D39 in the root zone of the Al-treated mutant were observed. Aluminum disturbed the concentrations of nutrients in plants, but inoculation with Cupriavidus sp. D39 partially restored such negative effects. Thus, the E107 (brz) mutant is a useful tool for studying the mechanisms of plant-microbe interactions, and PGPR plays an important role in protecting plants against Al toxicity.
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Affiliation(s)
- Andrey A Belimov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Alexander I Shaposhnikov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Tatiana S Azarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Oleg S Yuzikhin
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Edgar A Sekste
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Vera I Safronova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Igor A Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
- Department of Biology, Saint-Petersburg State University, University Embankment, 199034 Saint-Petersburg, Russia
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Akkurt Ş, Alkan Uçkun A, Varınca K, Uçkun M. Ability of Cupriavidus necator H16 to resist, bioremove, and accumulate some hazardous metal ions in water. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2023; 87:3017-3030. [PMID: 37387427 PMCID: wst_2023_188 DOI: 10.2166/wst.2023.188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]
Abstract
Bacterial biomasses are suitable and inexpensive biosorbents for the removal of metal ions. The Gram-negative betaproteobacterium Cupriavidus necator H16 is found in soil and freshwater environments. In this study, C. necator H16 was used to remove chromium (Cr), arsenic (As), aluminum (Al), and cadmium (Cd) ions from water. Minimum inhibition concentration (MIC) values of C. necator to Cr, As, Al, and Cd were found as 76, 69, 341, and 275 mg/L, respectively. The highest rates of Cr, As, Al, and Cd bioremoval were 45, 60, 54, and 78%, respectively. pH levels between 6.0 and 8.0 and an average temperature of 30 °C were optimum for the most efficient bioremoval. Scanning electron microscopy (SEM) images of Cd-treated cells showed that the morphology of the cells was significantly impaired compared to the control. Shifts in the Fourier transform infrared spectroscopy analysis (FTIR) spectra of the Cd-treated cell walls also confirmed the presence of active groups. As a result, it can be said that C. necator H16 has a moderate bioremoval efficiency for Cr, As, and Al and a high bioremoval efficiency for Cd.
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Affiliation(s)
- Şeyma Akkurt
- Department of Environmental Engineering, Faculty of Engineering, Adıyaman University, Adıyaman, Turkey E-mail:
| | - Aysel Alkan Uçkun
- Department of Environmental Engineering, Faculty of Engineering, Adıyaman University, Adıyaman, Turkey
| | - Kamil Varınca
- Department of Environmental Engineering, Faculty of Engineering, Adıyaman University, Adıyaman, Turkey
| | - Miraç Uçkun
- Department of Food Engineering, Faculty of Engineering, Adıyaman University, Adıyaman, Turkey
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Tripti, Kumar A, Maleva M, Borisova G, Rajkumar M. Amaranthus Biochar-Based Microbial Cell Composites for Alleviation of Drought and Cadmium Stress: A Novel Bioremediation Approach. PLANTS (BASEL, SWITZERLAND) 2023; 12:1973. [PMID: 37653890 PMCID: PMC10222574 DOI: 10.3390/plants12101973] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 05/01/2023] [Accepted: 05/10/2023] [Indexed: 09/02/2023]
Abstract
Metal contamination coupled with aridity is a major challenge for remediation of abiotic stressed soils throughout the world. Both biochar and beneficial bacteria showed a significant effect in bioremediation; however, their conjugate study needs more exploration. Two rhizobacteria strains Serratia sp. FV34b and Pseudomonas sp. ASe42b isolated from multi-metal and drought stressed sites showed multiple plant-growth-promoting attributes (phosphate solubilization, indole-3-acetic acid, siderophore, and ammonia production). Both strains were able to tolerate a high concentration of Cd along with being resistant to drought (-0.05 to -0.73 MPa). The seldom studied biomass of Amaranthus caudatus L. was used for biochar preparation by pyrolyzing it at 470 °C for 160 min under limited oxygen and then using it for the preparation of biochar-based microbial cell composites (BMC)s. To check the efficiency of BMC under Cd stress (21 mg kg-1 soil) and drought, a pot-scale study was conducted using Brassica napus L. for 47 days. Both the BMC5 (Biochar + Serratia sp. FV43b) and BMC9 (Biochar + Pseudomonas sp. ASe42b) improved the seed germination, plant biometrical (shoot and root biomass, length of organs) and physiological (photosynthetic pigments, proline, malondialdehyde, and relative water content) parameters under drought (exerted until it reaches up to 50% of field capacity) and Cd-spiked soil. However, for most of them, no or few significant differences were observed for BMC9 before and after drought. Moreover, BMC9 maximized the Cd accumulation in root and meager transfer to shoot, making it a best bioformulation for sustainable bioremediation of Cd and drought stressed soils using rapeseed plant.
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Affiliation(s)
- Tripti
- Laboratory of Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University, 620002 Ekaterinburg, Russia;
| | - Adarsh Kumar
- Laboratory of Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University, 620002 Ekaterinburg, Russia;
| | - Maria Maleva
- Laboratory of Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University, 620002 Ekaterinburg, Russia;
- Department of Experimental Biology and Biotechnology, Ural Federal University, 620002 Ekaterinburg, Russia;
| | - Galina Borisova
- Department of Experimental Biology and Biotechnology, Ural Federal University, 620002 Ekaterinburg, Russia;
| | - Mani Rajkumar
- Department of Environmental Sciences, Bharathiar University, Coimbatore 641046, India;
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An Oxalate Transporter Gene, AtOT, Enhances Aluminum Tolerance in Arabidopsis thaliana by Regulating Oxalate Efflux. Int J Mol Sci 2023; 24:ijms24054516. [PMID: 36901947 PMCID: PMC10003554 DOI: 10.3390/ijms24054516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 02/07/2023] [Accepted: 02/22/2023] [Indexed: 03/02/2023] Open
Abstract
Secretion and efflux of oxalic acid from roots is an important aluminum detoxification mechanism for various plants; however, how this process is completed remains unclear. In this study, the candidate oxalate transporter gene AtOT, encoding 287 amino acids, was cloned and identified from Arabidopsis thaliana. AtOT was upregulated in response to aluminum stress at the transcriptional level, which was closely related to aluminum treatment concentration and time. The root growth of Arabidopsis was inhibited after knocking out AtOT, and this effect was amplified by aluminum stress. Yeast cells expressing AtOT enhanced oxalic acid resistance and aluminum tolerance, which was closely correlated with the secretion of oxalic acid by membrane vesicle transport. Collectively, these results underline an external exclusion mechanism of oxalate involving AtOT to enhance oxalic acid resistance and aluminum tolerance.
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Yin Y, Wang YF, Cui HL, Zhou R, Li L, Duan GL, Zhu YG. Distinctive Structure and Assembly of Phyllosphere Microbial Communities between Wild and Cultivated Rice. Microbiol Spectr 2023; 11:e0437122. [PMID: 36625666 PMCID: PMC9927517 DOI: 10.1128/spectrum.04371-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Accepted: 12/16/2022] [Indexed: 01/11/2023] Open
Abstract
Wild rice has been demonstrated to possess enriched genetic diversity and multiple valuable traits involved in disease/pest resistance and abiotic stress tolerance, which provides a potential resource for sustainable agriculture. However, unlike the plant compartments such as rhizosphere, the structure and assembly of phyllosphere microbial communities of wild rice remain largely unexplored. Through amplicon sequencing, this study compared the phyllosphere bacterial and fungal communities of wild rice and its neighboring cultivated rice. The core phyllosphere microbial taxa of both wild and cultivated rice are dominated with Pantoea, Methylobacterium, Nigrospora, and Papiliotrema, which are potentially beneficial to rice growth and health. Compared to the cultivated rice, Methylobacterium, Sphingomonas, Phaeosphaeria, and Khuskia were significantly enriched in the wild rice phyllosphere. The potentially nitrogen-fixing Methylobacterium is the dominated wild-enriched microbe; Sphingomonas is the hub taxon of wild rice networks. In addition, the microbiota of wild rice was more governed by deterministic assembly with a more complicated and stable community network than the cultivated rice. Our study provides a list of the beneficial microbes in the wild rice phyllosphere and reveals the microbial divergence between wild rice and cultivated rice in the original habitats, which highlights the potential selective role of wild rice in recruiting specific microbiomes for enhancing crop performance and promoting sustainable food production. IMPORTANCE Plant microbiota are being considered a lever to increase the sustainability of food production under a changing climate. In particular, the microbiomes associated with ancestors of modern cultivars have the potential to support their domesticated cultivars. However, few efforts have been devoted to studying the biodiversity and functions of microbial communities in the native habitats of ancestors of modern crop species. This study provides a list of the beneficial microbes in the wild rice phyllosphere and explores the microbial interaction patterns and the functional profiles of wild rice. This information could be useful for the future utilization of the plant microbiome to enhance crop performance and sustainability, especially in the framework of sustainable agroecosystems.
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Affiliation(s)
- Yue Yin
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yi-Fei Wang
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hui-Ling Cui
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Rui Zhou
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Lv Li
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Gui-Lan Duan
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yong-Guan Zhu
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
- Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
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10
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Khanal M, Bhatta BP, Timilsina S, Ghimire S, Cochran K, Malla S. Curtobacterium allii sp. nov., the actinobacterial pathogen causing onion bulb rot. Antonie Van Leeuwenhoek 2023; 116:83-96. [PMID: 36100777 DOI: 10.1007/s10482-022-01775-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Accepted: 09/06/2022] [Indexed: 02/01/2023]
Abstract
A Gram-stain-positive, aerobic, and non-spore-forming bacterial strain, 20TX0166T, was isolated from a diseased onion bulb in Texas, USA. Upon testing its pathogenicity on onion bulb, it produced pathogenic response which makes it first species of pathogen belonging to the phylum actinobacteria detected in onion. Phylogenetic analysis of the 16S rRNA gene sequence revealed that the strain belonged to the genus Curtobacterium and was most similar to Curtobacterium flaccumfaciens LMG 3645T (100%), C. pusillum DSM 20527T (99.5%), and C. oceanosedimentum ATCC 31317T (99.5%). The estimated genome size of the novel species was 4.0 Mbp with a G + C content of 70.8%. The orthologous ANI (orthoANIu), ANI based on blast (ANIb), and dDDH values between the novel strain and the closest relative, C. flaccumfaciens LMG 3645T, were 95.7%, 95.4%, and 63.3%, respectively. These values were below the recommended species cut-off threshold of 96% (ANI) and 70% (dDDH), suggesting the strain may be a novel species. Physiologic and phenotypic characters of this novel strain were also unique when compared with the closely related species. The major cellular fatty acids of this strain were anteiso-C15:0 and anteiso-C17:0. Using a polyphasic approach based on phenotypic and genotypic analyses, strain 20TX0166T represents a novel species of the genus Curtobacterium, and the name Curtobacterium allii sp. nov. is proposed. The type strain is 20TX0166T (= LMG 32517T = CIP112023T = NCIMB 15427T).
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Affiliation(s)
- Manzeal Khanal
- Department of Horticultural Sciences, Texas A&M University, College Station, TX, 77843, USA.,Texas A&M AgriLife Research and Extension Centre, Uvalde, TX, 78801, USA
| | - Bed Prakash Bhatta
- Department of Horticultural Sciences, Texas A&M University, College Station, TX, 77843, USA.,Texas A&M AgriLife Research and Extension Centre, Uvalde, TX, 78801, USA
| | - Sujan Timilsina
- Department of Plant Pathology, University of Florida, Gainesville, FL, 32611, USA.,Charles River Laboratories, Newark, DE, USA
| | - Sudeep Ghimire
- Department of Pathology, University of Iowa, Iowa City, IA, 54442, USA
| | - Kimberly Cochran
- Texas A&M AgriLife Research and Extension Centre, Uvalde, TX, 78801, USA.,Department of Plant Pathology and Microbiology, Texas A&M University, College Station, TX, 77843, USA
| | - Subas Malla
- Department of Horticultural Sciences, Texas A&M University, College Station, TX, 77843, USA. .,Texas A&M AgriLife Research and Extension Centre, Uvalde, TX, 78801, USA.
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11
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Danyal Y, Mahmood K, Ullah S, Rahim A, Raheem G, Khan AH, Ullah A. Phytoremediation of industrial effluents assisted by plant growth promoting bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:5296-5311. [PMID: 36402881 DOI: 10.1007/s11356-022-23967-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/29/2022] [Indexed: 06/16/2023]
Abstract
Industrialization plays a crucial role in the economic development of a country; however, the effluents produced as a byproduct generally contain toxic substances which are detrimental to living organisms. In this regard, it is essential to treat these toxic effluents before exposing them to the natural environment by selecting the most appropriate method accordingly. Several techniques are used to remediate industrial effluents including physical, chemical, and biological. Although some physical and chemical remediation technologies are of substantially important in remediation of industrial effluents, however, these technologies are either expensive to be applied by developing countries or not suitable for remediation of all kinds of effluents. In contrast, biological remediation is cost effective, nature friendly, and easy to use for almost all kinds of effluents. Among biological remediation strategies, phytoremediation is considered to be the most suitable method for remediation of industrial effluents; however, the phytoremediation process is slow, takes time in application and some effluents even affect plants growth and development. Alternately, plant microbe interactions could be a winning partner to remediate industrial effluents more efficiently. Among the microbes, plant growth promoting bacteria (PGPB) not only improve plant growth but also help in degradation, sequestration, volatilization, solubilization, mobilization, and bioleaching of industrial effluents which subsequently improve the phytoremediation process. The current study discusses the role of PGPB in enhancing the phytoremediation processes of industrial effluents.
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Affiliation(s)
- Youshaa Danyal
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Kainat Mahmood
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Shariat Ullah
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Abdur Rahim
- Department of Zoology, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Gul Raheem
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan
| | - Aamir Hamid Khan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Abid Ullah
- Department of Botany, University of Malakand, Dir Lower, Chakdara, Khyber Pakhtunkhwa, Pakistan.
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Silambarasan S, Logeswari P, Vangnai AS, Cornejo P. Rhodotorula mucilaginosa CAM4 improved selenium uptake in Spinacia oleracea L. and soil enzymatic activities under abiotic stresses. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:89943-89953. [PMID: 35859235 DOI: 10.1007/s11356-022-21935-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/05/2022] [Indexed: 06/15/2023]
Abstract
This study aimed to examine selenium (Se) acquisition by spinach (Spinacia oleracea L.) plants growing under salinity and drought stress through the inoculation of Rhodotorula mucilaginosa strain CAM4. Under abiotic stress conditions, strain CAM4 with Se inoculation increased the shoot length, root length, shoot dry weight and root dry weight by 75.8-93.7%, 47.7-80.9%, 101.9-109.8% and 130.5-270.2%, respectively compared to uninoculated Se-treated plants grown under the same conditions. Under abiotic stresses, the Se-treated CAM4 inoculated plants showed a significant increase in Se concentration in the edible leaves of spinach, which was 227.3-234.5% higher than uninoculated Se-treated control plants. Likewise, strain CAM4 treatment significantly enhanced the plant nutrition of both micro and macro-nutrients. Under normal and abiotic stresses, CAM4 inoculation enhanced soil activities of acid phosphatase, alkaline phosphatase, dehydrogenase, β-glucosidase and urease in the post harvested soil up to 28-47.5%, 62.6-121.8%, 69-177.1%, 16.2-37.9% and 19.8-41.2%, respectively over corresponding uninoculated soil.
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Affiliation(s)
- Sivagnanam Silambarasan
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar, Temuco, 01145, Chile.
| | - Peter Logeswari
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar, Temuco, 01145, Chile
| | - Alisa S Vangnai
- Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand
- Center of Excellence in Biocatalyst and Sustainable Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok , 10330, Thailand
| | - Pablo Cornejo
- Escuela de Agronomía, Facultad de Ciencias Agronómicas y de los Alimentos, Pontificia Universidad Católica de Valparaíso, Quillota, Chile
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Ryabova OV, Gagarina AA. Actinomycetes as the Basis of Probiotics for Plants. APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822070055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Management of Rhizosphere Microbiota and Plant Production under Drought Stress: A Comprehensive Review. PLANTS 2022; 11:plants11182437. [PMID: 36145836 PMCID: PMC9502053 DOI: 10.3390/plants11182437] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 09/13/2022] [Accepted: 09/16/2022] [Indexed: 01/10/2023]
Abstract
Drought generates a complex scenario worldwide in which agriculture should urgently be reframed from an integrative point of view. It includes the search for new water resources and the use of tolerant crops and genotypes, improved irrigation systems, and other less explored alternatives that are very important, such as biotechnological tools that may increase the water use efficiency. Currently, a large body of evidence highlights the role of specific strains in the main microbial rhizosphere groups (arbuscular mycorrhizal fungi, yeasts, and bacteria) on increasing the drought tolerance of their host plants through diverse plant growth-promoting (PGP) characteristics. With this background, it is possible to suggest that the joint use of distinct PGP microbes could produce positive interactions or additive beneficial effects on their host plants if their co-inoculation does not generate antagonistic responses. To date, such effects have only been partially analyzed by using single omics tools, such as genomics, metabolomics, or proteomics. However, there is a gap of information in the use of multi-omics approaches to detect interactions between PGP and host plants. This approach must be the next scale-jump in the study of the interaction of soil–plant–microorganism. In this review, we analyzed the constraints posed by drought in the framework of an increasing global demand for plant production, integrating the important role played by the rhizosphere biota as a PGP agent. Using multi-omics approaches to understand in depth the processes that occur in plants in the presence of microorganisms can allow us to modulate their combined use and drive it to increase crop yields, improving production processes to attend the growing global demand for food.
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Rhizobacteria Mitigate the Negative Effect of Aluminum on Pea Growth by Immobilizing the Toxicant and Modulating Root Exudation. PLANTS 2022; 11:plants11182416. [PMID: 36145816 PMCID: PMC9503566 DOI: 10.3390/plants11182416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 09/01/2022] [Accepted: 09/07/2022] [Indexed: 11/17/2022]
Abstract
High soil acidity is one of the main unfavorable soil factors that inhibit the growth and mineral nutrition of plants. This is largely due to the toxicity of aluminum (Al), the mobility of which increases significantly in acidic soils. Symbiotic microorganisms have a wide range of beneficial properties for plants, protecting them against abiotic stress factors. This report describes the mechanisms of positive effects of plant growth-promoting rhizobacteria Pseudomonas fluorescens SPB2137 on four pea (Pisum sativum L.) genotypes grown in hydroponics and treated with 80 µM AlCl3. In batch culture, the bacteria produced auxins, possessed 1-aminocyclopropane-1-carboxylate (ACC) deaminase activity, alkalized the medium and immobilized Al, forming biofilm-like structures and insoluble phosphates. Inoculation with Ps. fluorescens SPB2137 increased root and/or shoot biomass of Al-treated plants. The bacteria alkalized the nutrient solution and transferred Al from the solution to the residue, which contained phosphorus that was exuded by roots. As a result, the Al concentration in roots decreased, while the amount of precipitated Al correlated negatively with its concentration in the solution, positively with the solution pH and negatively with Al concentration in roots and shoots. Treatment with Al induced root exudation of organic acids, amino acids and sugars. The bacteria modulated root exudation via utilization and/or stimulation processes. The effects of Al and bacteria on plants varied depending on pea genotype, but all the effects had a positive direction and the variability was mostly quantitative. Thus, Ps. fluorescens SPB2137 improved the Al tolerance of pea due to immobilization and exclusion of toxicants from the root zone.
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Silambarasan S, Logeswari P, Vangnai AS, Kamaraj B, Cornejo P. Plant growth-promoting actinobacterial inoculant assisted phytoremediation increases cadmium uptake in Sorghum bicolor under drought and heat stresses. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 307:119489. [PMID: 35594999 DOI: 10.1016/j.envpol.2022.119489] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 04/24/2022] [Accepted: 05/14/2022] [Indexed: 05/22/2023]
Abstract
In this study, two proficient Cadmium (Cd) resistant and plant growth-promoting actinobacterial strains were isolated from metal-polluted soils and identified as Streptomyces sp. strain RA04 and Nocardiopsis sp. strain RA07. Multiple abiotic stress tolerances were found in these two actinobacterial strains, including Cd stress (CdS), drought stress (DS) and high-temperature stress (HTS). Both actinobacterial strains exhibited multifarious plant growth-promoting (PGP) traits such as phosphate solubilization, and production of indole-3-acetic acid, siderophores and 1-aminocyclopropane-1-carboxylate deaminase under CdS, DS and HTS conditions. The inoculation of strains RA04 and RA07 significantly increased Sorghum bicolor growth and photosynthetic pigments under CdS, DS, HTS, CdS + DS and CdS + HTS conditions as compared to their respective uninoculated plants. The actinobacterial inoculants reduced malondialdehyde concentration and enhanced antioxidant enzymes in plants cultivated under various abiotic stress conditions, indicating that actinobacterial inoculants reduced oxidative damage. Furthermore, strains RA04 and RA07 enhanced the accumulation of Cd in plant tissues and the translocation of Cd from root to shoot under CdS, CdS + DS and CdS + HTS treatments as compared to their respective uninoculated plants. These findings suggest that RA04 and RA07 strains could be effective bio-inoculants to accelerate phytoremediation of Cd polluted soil even in DS and HTS conditions.
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Affiliation(s)
- Sivagnanam Silambarasan
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile.
| | - Peter Logeswari
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
| | - Alisa S Vangnai
- Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand; Center of Excellence in Biocatalyst and Sustainable Biotechnology, Faculty of Science, Chulalongkorn University, Bangkok 10300, Thailand.
| | - Balu Kamaraj
- Department of Neuroscience Technology, College of Applied Medical Science in Jubail, Imam Abdulrahman Bin Faisal University, Jubail, Saudi Arabia
| | - Pablo Cornejo
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile; Scientific and Technological Bioresource Nucleus, BIOREN-UFRO, Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile.
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Wang Y, Narayanan M, Shi X, Chen X, Li Z, Natarajan D, Ma Y. Plant growth-promoting bacteria in metal-contaminated soil: Current perspectives on remediation mechanisms. Front Microbiol 2022; 13:966226. [PMID: 36033871 PMCID: PMC9404692 DOI: 10.3389/fmicb.2022.966226] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Accepted: 07/13/2022] [Indexed: 11/18/2022] Open
Abstract
Heavy metal contamination in soils endangers humans and the biosphere by reducing agricultural yield and negatively impacting ecosystem health. In recent decades, this issue has been addressed and partially remedied through the use of “green technology,” which employs metal-tolerant plants to clean up polluted soils. Furthermore, the global climate change enhances the negative effects of climatic stressors (particularly drought, salinity, and extreme temperatures), thus reducing the growth and metal accumulation capacity of remediating plants. Plant growth-promoting bacteria (PGPB) have been widely introduced into plants to improve agricultural productivity or the efficiency of phytoremediation of metal-contaminated soils via various mechanisms, including nitrogen fixation, phosphate solubilization, phytohormone production, and biological control. The use of metal-tolerant plants, as well as PGPB inoculants, should hasten the process of moving this technology from the laboratory to the field. Hence, it is critical to understand how PGPB ameliorate environmental stress and metal toxicity while also inducing plant tolerance, as well as the mechanisms involved in such actions. This review attempts to compile the scientific evidence on this topic, with a special emphasis on the mechanism of PGPB involved in the metal bioremediation process [plant growth promotion and metal detoxification/(im)mobilization/bioaccumulation/transformation/translocation] and deciphering combined stress (metal and climatic stresses) tolerance.
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Affiliation(s)
- Yue Wang
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Mathiyazhagan Narayanan
- Division of Research and Innovation, Department of Biotechnology, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Science, Chennai, Tamil Nadu, India
| | - Xiaojun Shi
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Xinping Chen
- College of Resources and Environment, Southwest University, Chongqing, China
| | - Zhenlun Li
- College of Resources and Environment, Southwest University, Chongqing, China
| | | | - Ying Ma
- College of Resources and Environment, Southwest University, Chongqing, China
- *Correspondence: Ying Ma,
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Ahmad HM, Fiaz S, Hafeez S, Zahra S, Shah AN, Gul B, Aziz O, Mahmood-Ur-Rahman, Fakhar A, Rafique M, Chen Y, Yang SH, Wang X. Plant Growth-Promoting Rhizobacteria Eliminate the Effect of Drought Stress in Plants: A Review. FRONTIERS IN PLANT SCIENCE 2022; 13:875774. [PMID: 36035658 PMCID: PMC9406510 DOI: 10.3389/fpls.2022.875774] [Citation(s) in RCA: 33] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Accepted: 05/23/2022] [Indexed: 07/21/2023]
Abstract
Plants evolve diverse mechanisms to eliminate the drastic effect of biotic and abiotic stresses. Drought is the most hazardous abiotic stress causing huge losses to crop yield worldwide. Osmotic stress decreases relative water and chlorophyll content and increases the accumulation of osmolytes, epicuticular wax content, antioxidant enzymatic activities, reactive oxygen species, secondary metabolites, membrane lipid peroxidation, and abscisic acid. Plant growth-promoting rhizobacteria (PGPR) eliminate the effect of drought stress by altering root morphology, regulating the stress-responsive genes, producing phytohormones, osmolytes, siderophores, volatile organic compounds, and exopolysaccharides, and improving the 1-aminocyclopropane-1-carboxylate deaminase activities. The use of PGPR is an alternative approach to traditional breeding and biotechnology for enhancing crop productivity. Hence, that can promote drought tolerance in important agricultural crops and could be used to minimize crop losses under limited water conditions. This review deals with recent progress on the use of PGPR to eliminate the harmful effects of drought stress in traditional agriculture crops.
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Affiliation(s)
- Hafiz Muhammad Ahmad
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Sajid Fiaz
- Department of Plant Breeding and Genetics, The University of Haripur, Haripur, Pakistan
| | - Sumaira Hafeez
- Department of Plant Breeding and Molecular Genetics, University of Poonch, Rawalakot, Pakistan
| | - Sadaf Zahra
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Adnan Noor Shah
- Department of Agricultural Engineering, Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Bushra Gul
- Department of Biosciences, University of Wah, Wah, Pakistan
| | - Omar Aziz
- Department of Soil and Environmental Science, University of Agriculture, Faisalabad, Pakistan
| | - Mahmood-Ur-Rahman
- Department of Bioinformatics and Biotechnology, Government College University, Faisalabad, Pakistan
| | - Ali Fakhar
- Department of Soil and Climate Change, The University of Haripur, Haripur, Pakistan
| | - Mazhar Rafique
- Department of Soil and Climate Change, The University of Haripur, Haripur, Pakistan
| | - Yinglong Chen
- School of Agriculture and Environment, UWA Institute of Agriculture, University of Western Australia, Perth, WA, Australia
| | - Seung Hwan Yang
- Department of Biotechnology, Chonnam National University, Yeosu, South Korea
| | - Xiukang Wang
- College of Life Sciences, Yan’an University, Yan’an, China
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19
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Silambarasan S, Logeswari P, Sivaramakrishnan R, Cornejo P, Sipahutar MK, Pugazhendhi A. Amelioration of aluminum phytotoxicity in Solanum lycopersicum by co-inoculation of plant growth promoting Kosakonia radicincitans strain CABV2 and Streptomyces corchorusii strain CASL5. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 832:154935. [PMID: 35395302 DOI: 10.1016/j.scitotenv.2022.154935] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Revised: 03/16/2022] [Accepted: 03/27/2022] [Indexed: 05/25/2023]
Abstract
Aluminum (Al) toxicity is the main constraint for crop cultivation in acidic soils. In this study, Al-tolerant rhizobacteria Kosakonia radicincitans (CABV2) and actinobacteria Streptomyces corchorusii (CASL5) were isolated from Beta vulgaris rhizosphere in acidic soil. Both isolates displayed high tolerance to Al (10 mM), produce siderophores, indole-3-acetic acid, 1-aminocyclopropane-1-carboxylate and solubilize phosphate. Co-inoculation of CABV2 and CASL5 strains were significantly increased the root length (312.90%), shoot length (183.19%), fresh weight (224.82%), dry weight (309.25%) and photosynthetic pigments (chlorophyll a 279.69%, chlorophyll b 188.23% and carotenoids 158.20%) of Solanum lycopersicum plants under 300 mg Al kg-1 soil conditions as compared to uninoculated Al stressed plants. Similarly, the co-inoculation treated plants subjected to Al stress condition enhanced the uptake of essential nutrients (N 229%, P 252%, K 115%, Fe 185%, Mg 345% and Ca 202%) by plants as compared to Al stressed uninoculated plants. Under Al stress (300 mg Al kg-1 soil), co-inoculation significantly decreased malondialdehyde content (66%), and increased catalase (83%), superoxide dismutase (82%), peroxidase (89%) activities and root exudates (organic acids 6.44-12.36 fold) in S. lycopersicum as compared to uninoculated plants, indicating that the CABV2 and CASL5 strains were reduced Al-induced oxidative stress. Moreover, co-inoculation significantly reduced Al accumulation in the root (89%), stem (95%) and leaves (94%) of S. lycopersicum under Al stress at 300 mg Al kg-1 soil, compared to the uninoculated plants. This is the first report of K. radicincitans strain CABV2 and S. corchorusii strain CASL5 potentially reducing Al uptake in S. lycopersicum.
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Affiliation(s)
- Sivagnanam Silambarasan
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
| | - Peter Logeswari
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
| | - Ramachandran Sivaramakrishnan
- Laboratory of Cyanobacterial Biotechnology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Pablo Cornejo
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile; Scientific and Technological Bioresource Nucleus, BIOREN-UFRO, Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile.
| | - Merry Krisdawati Sipahutar
- Occupational Health and Safety (OHS) Study Program, Faculty of Vocation, Balikpapan University, East Kalimantan, 76114, Indonesia
| | - Arivalagan Pugazhendhi
- Emerging Materials for Energy and Environmental Applications Research Group, School of Engineering and Technology, Van Lang University, Ho Chi Minh City, Viet Nam
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Han Z, Wang J, Wang X, Zhang X, Cheng Y, Cai Z, Nian H, Ma Q. GmWRKY21, a Soybean WRKY Transcription Factor Gene, Enhances the Tolerance to Aluminum Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2022; 13:833326. [PMID: 35958220 PMCID: PMC9359102 DOI: 10.3389/fpls.2022.833326] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Accepted: 06/15/2022] [Indexed: 06/15/2023]
Abstract
The WRKY transcription factors (TFs) are one of the largest families of TFs in plants and play multiple roles in plant growth and development and stress response. In this study, GmWRKY21 encoding a WRKY transcription factor was functionally characterized in Arabidopsis and soybean. The GmWRKY21 protein containing a highly conserved WRKY domain and a C2H2 zinc-finger structure is located in the nucleus and has the characteristics of transcriptional activation ability. The GmWRKY21 gene presented a constitutive expression pattern rich in the roots, leaves, and flowers of soybean with over 6-fold of relative expression levels and could be substantially induced by aluminum stress. As compared to the control, overexpression of GmWRKY21 in Arabidopsis increased the root growth of seedlings in transgenic lines under the AlCl3 concentrations of 25, 50, and 100 μM with higher proline and lower MDA accumulation. The results of quantitative real-time polymerase chain reaction (qRT-PCR) showed that the marker genes relative to aluminum stress including ALMT, ALS3, MATE, and STOP1 were induced in GmWRKY21 transgenic plants under AlCl3 treatment. The stress-related genes, such as KIN1, COR15A, COR15B, COR47, GLOS3, and RD29A, were also upregulated in GmWRKY21 transgenic Arabidopsis under aluminum stress. Similarly, stress-related genes, such as GmCOR47, GmDREB2A, GmMYB84, GmKIN1, GmGST1, and GmLEA, were upregulated in hair roots of GmWRKY21 transgenic plants. In summary, these results suggested that the GmWRKY21 transcription factor may promote the tolerance to aluminum stress mediated by the pathways regulating the expression of the acidic aluminum stress-responsive genes and abiotic stress-responsive genes.
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Affiliation(s)
- Zhenzhen Han
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Jinyu Wang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Xinxin Wang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Xijia Zhang
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Yanbo Cheng
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Zhandong Cai
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Hai Nian
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
| | - Qibin Ma
- The State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
- The Key Laboratory of Plant Molecular Breeding of Guangdong Province, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Subcenter of the National Center for Soybean Improvement, College of Agriculture, South China Agricultural University, Guangzhou, China
- The Guangdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, South China Agricultural University, Guangzhou, China
- Zengcheng Teaching and Research Bases, South China Agricultural University, Guangzhou, China
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21
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de Freitas Nunes Oliveira A, Saboya de Sousa LI, Silva da Costa VA, de Andrade JVT, Lucena Lima LA, de Sales PAF, da Silva DF, de Araujo Pereira AP, Maciel Melo VM. Long-term effects of grazing on the biological, chemical, and physical soil properties of the Caatinga biome. Microbiol Res 2021; 253:126893. [PMID: 34678684 DOI: 10.1016/j.micres.2021.126893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Revised: 09/20/2021] [Accepted: 10/11/2021] [Indexed: 01/10/2023]
Abstract
Soil degradation is a global issue that affects both plant productivity and human life. Intensive grazing practices can accelerate this process, mainly due to rapid removal of biomass from the soil surface. However, the long-term effects of grazing on biological, chemical, and physical properties remain poorly understood, particularly in tropical drylands, such as the Caatinga biome. Our aim was to evaluate the soil properties and combine both culture-dependent and -independent analyses to assess metabolic activity and bacterial community structure. We collected samples (0-20 cm) of three different types of soil in the Caatinga biome: secondary Caatinga forest (NC), grazing exclusion (GE), and degraded areas by overgrazing (OG). We sought to investigate how grazing affects soil properties to determine the effectiveness of grazing exclusion in the restoration of soil fertility/functions. Redundancy analysis demonstrated NC were positively correlated with organic carbon (λ = 0.18, p = 0.0012) and total nitrogen (λ = 0.16, p = 0.0011), while OG was correlated with harmful soil parameters such as Na+ (λ = 0.08, p = 0.0400), electric conductivity (λ = 0.13, p = 0.0060) and exchangeable acidity (λ = 0.11, p = 0.0030). In addition, GE showed lower aluminum content and saturation, reducing these harmful parameters by 48 % and 34 %, respectively. Also, GE showed the highest values for the β-glucosidase (63.62 mg ρ-nitrophenol kg-1 h-1) and arylsulfatase (5.8 mg ρ-nitrophenol kg-1 h-1) activities. Changes in bacterial community structure were significant (p = 0.0096), with a higher difference comparing GE and OG (p = 0.0135). The GE area showed 20 % more phosphate solubilizers than OG, but there were no differences for siderophores production. All isolates were halotolerant and had at least 60 % nitrogen fixers. Our findings indicate that while soil recovery is slow, with grazing-exclusion areas presenting 18 years of implantation, it seems to improve in subsequent years. Finally, our results provide evidence that microbe-based technologies can mitigate soil degradation in the Caatinga biome.
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Affiliation(s)
| | - Lara Isensee Saboya de Sousa
- Microbial Ecology and Biotechnology Laboratory, Biology Department, Federal University of Ceará, Fortaleza, Ceara, Brazil
| | - Vanessa Ariane Silva da Costa
- Microbial Ecology and Biotechnology Laboratory, Biology Department, Federal University of Ceará, Fortaleza, Ceara, Brazil
| | | | - Lara Andrade Lucena Lima
- Microbial Ecology and Biotechnology Laboratory, Biology Department, Federal University of Ceará, Fortaleza, Ceara, Brazil
| | - Pedro Amaral Fontes de Sales
- Microbial Ecology and Biotechnology Laboratory, Biology Department, Federal University of Ceará, Fortaleza, Ceara, Brazil
| | - Danilo Ferreira da Silva
- Soil Microbiology Laboratory, Soil Science Department, Federal University of Ceara, Fortaleza, Ceara, Brazil
| | | | - Vânia Maria Maciel Melo
- Microbial Ecology and Biotechnology Laboratory, Biology Department, Federal University of Ceará, Fortaleza, Ceara, Brazil.
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22
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Bruno LB, Anbuganesan V, Karthik C, Kumar A, Banu JR, Freitas H, Rajkumar M. Enhanced phytoextraction of multi-metal contaminated soils under increased atmospheric temperature by bioaugmentation with plant growth promoting Bacillus cereus. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 289:112553. [PMID: 33857710 DOI: 10.1016/j.jenvman.2021.112553] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 03/01/2021] [Accepted: 04/04/2021] [Indexed: 06/12/2023]
Abstract
The co-occurrence of environmental stresses such as heavy metals (HM) and increased atmospheric temperature (IAT) pose serious implications on plant growth and productivity. In this work, we evaluated the role of plant growth-promoting bacteria (PGPB) and its effectiveness on Zea mays growth, stress tolerance and phytoremediation potential in multi-metal (MM) contaminated soils under IAT stress conditions. The PGPB strain TCU11 was isolated from metal contaminated soils and identified as Bacillus cereus. TCU11 was able to resist abiotic stresses such as IAT (45 °C), MM (Pb, Zn, Ni, Cu, and Cd), antibiotics and induced in vitro plant growth promotion (PGP) by producing siderophores (catechol and hydroxymate) and indole 3-acetic acid even in the presence of MM under IAT. Inoculation of TCU11 significantly increased the biomass, chlorophyll, carotenoids, and protein content of Z. mays compared to the respective control under MM, IAT, and MM + IAT stress. A decrease of malondialdehyde and over-accumulation of total phenolics, proline along with the increased activity of superoxide dismutase, catalase and ascorbic peroxidase were observed in TCU11 inoculated plants under stress conditions. These results suggested MM and/or IAT significantly reduced the maize growth, whereas TCU11 inoculation mitigated the combined stress effects on maize performance. Moreover, the inoculation of TCU11 under IAT stress increased the MM (Pb, Zn, Ni, Cu, and Cd) accumulation in plant tissues and also increased the translocation of HM from root to shoot except for Ni. The results of soil HM mobilization further indicates that IAT increased the HM mobilizing activity of TCU11, thus increasing the concentrations of bio-available HM in soil. These results suggested that TCU11 not only alleviates MM and IAT stresses but also enhances the biomass production and HM accumulation in plants. Therefore, TCU11 can be exploited as inoculums for improving the phytoremediation efficiency in MM polluted soils under IAT conditions.
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Affiliation(s)
- L Benedict Bruno
- Department of Environmental Sciences, Bharathiar University, Coimbatore, 641046, India
| | - Vadivel Anbuganesan
- Department of Environmental Sciences, Bharathiar University, Coimbatore, 641046, India
| | - Chinnannan Karthik
- Department of Agronomy, Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Zhejiang Province, China
| | - Adarsh Kumar
- Laboratory of Biotechnology, Institute of Natural Sciences and Mathematics, Ural Federal University, Ekaterinburg, 620002, Russia
| | - J Rajesh Banu
- Department of Life Sciences, Central University of Tamilnadu, Tiruvarur, 610 005, India
| | - Helena Freitas
- Centre for Functional Ecology - Science for People & the Planet, Department of Life Sciences, University of Coimbra, 3000-456, Coimbra, Portugal
| | - Mani Rajkumar
- Department of Environmental Sciences, Bharathiar University, Coimbatore, 641046, India.
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23
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Profiling, isolation and characterisation of beneficial microbes from the seed microbiomes of drought tolerant wheat. Sci Rep 2021; 11:11916. [PMID: 34099781 PMCID: PMC8184954 DOI: 10.1038/s41598-021-91351-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 05/18/2021] [Indexed: 11/09/2022] Open
Abstract
Climate change is predicted to increase the incidence and severity of drought conditions, posing a significant challenge for agriculture globally. Plant microbiomes have been demonstrated to aid crop species in the mitigation of drought stress. The study investigated the differences between the seed microbiomes of drought tolerant and drought susceptible wheat lines. Furthermore, it highlighted and quantified the degree of drought tolerance conferred by specific microbes isolated from drought tolerant wheat seed microbiomes. Metagenomic and culture-based methods were used to profile and characterise the seed microbiome composition of drought tolerant and drought susceptible wheat lines under rainfed and drought conditions. Isolates from certain genera were enriched by drought tolerant wheat lines when placed under drought stress. Wheat inoculated with isolates from these targeted genera, such as Curtobacterium flaccumfaciens (Cf D3-25) and Arthrobacter sp. (Ar sp. D4-14) demonstrated the ability to promote growth under drought conditions. This study indicates seed microbiomes from genetically distinct wheat lines enrich for beneficial bacteria in ways that are both line-specific and responsive to environmental stress. As such, seed from stress-phenotyped lines represent an invaluable resource for the identification of beneficial microbes with plant growth promoting activity that could improve commercial crop production.
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24
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Silambarasan S, Logeswari P, Ruiz A, Cornejo P, Kannan VR. Influence of plant beneficial Stenotrophomonas rhizophila strain CASB3 on the degradation of diuron-contaminated saline soil and improvement of Lactuca sativa growth. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:35195-35207. [PMID: 32588300 DOI: 10.1007/s11356-020-09722-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 06/12/2020] [Indexed: 06/11/2023]
Abstract
Diuron is one of the major hazardous pollutants which posses severe risk to the environment and human healthiness. On the other hand, salinity is the most severe environmental stressor that limits crop productivity. Therefore, it is required to address this co-existing abiotic stresses in agricultural soil. Plant growth-promoting rhizobacteria have gained an engaging role in the degradation of pesticides in agricultural soil. However, their role against the restoration of diuron-contaminated saline soil is still not known. Thus, in this study, diuron-degrading, salinity-tolerant Stenotrophomonas rhizophila strain CASB3 was isolated and characterized. Strain CASB3 showed important PGP traits under normal and diuron or salt stresses. Complete degradation of 10-50 mg L-1 diuron in the aqueous medium under normal and salinity stress conditions was achieved within 48-120 h and 48-192 h, respectively. A unique pathway for diuron biodegradation was proposed based on GC-MS analysis. In a greenhouse study, CASB3 inoculated into diuron-contaminated saline soil efficiently degraded diuron (50 mg kg-1) by 94% in 42 days and simultaneously resulted in an enhancement of root-shoot length (47.22-63.41%), fresh-dry biomass (136.36-156.66%), and photosynthetic pigments (36.93-92.28%) in Lactuca sativa plants. These results suggest the strain CASB3 could be used as a bioresource for the reclamation of diuron-contaminated saline soils.
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Affiliation(s)
- Sivagnanam Silambarasan
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
- Rhizosphere Biology Laboratory, Department of Microbiology, Bharathidasan University, Tiruchirappalli 620 024, Tamil Nadu, India
| | - Peter Logeswari
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
| | - Antonieta Ruiz
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
- Scientific and Technological Bioresource Nucleus, BIOREN-UFRO, Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile
| | - Pablo Cornejo
- Centro de Investigación en Micorrizas y Sustentabilidad Agroambiental, CIMYSA, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile.
- Scientific and Technological Bioresource Nucleus, BIOREN-UFRO, Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Avenida Francisco Salazar 01145, Temuco, Chile.
| | - Velu Rajesh Kannan
- Rhizosphere Biology Laboratory, Department of Microbiology, Bharathidasan University, Tiruchirappalli 620 024, Tamil Nadu, India
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25
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Wang Z, Zhu Y, Jing R, Wu X, Li N, Liu H, Zhang X, Wang W, Liu Y. High-throughput sequencing-based analysis of the composition and diversity of endophytic bacterial community in seeds of upland rice. Arch Microbiol 2020; 203:609-620. [PMID: 32995980 DOI: 10.1007/s00203-020-02058-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 09/17/2020] [Accepted: 09/19/2020] [Indexed: 01/07/2023]
Abstract
Upland rice is an ecotype crop resulting from the long-term domestication and evolution of rice in dry land without a water layer. Generally, the stems and leaves are thick and luxuriant, while the leaves also typically broad and light. The root system is developed with abundant root hair, and the osmotic pressure of the root and cell juice concentration in the leaves is high, while this plant is drought-resistant, heat-resistant, and water absorbent. This study aims to reveal the "core flora" of the endophytes in upland rice seeds by examining their diversity and community structures. It further intends to reveal the impact of the soil environment on the formation of endophyte community structures in upland rice seeds by comparing the environmental soil microorganisms in upland rice habitats. In this study, high-throughput sequencing technology based on the Illumina Hiseq 2500 platform was used to investigate the structure and diversity of endophytic bacterial communities using upland rice varieties collected from different locations and soil samples from unified planting sites as materials. Here, 42 endophytic OTUs were found to coexist in the 14 samples. At the phylum level, the first dominant phyla in all the samples were Proteobacteria (93.81-99.99%). At the genus level, Pantoea (8.77-87.77%), Pseudomonas (1.15-61.58%), Methylobacterium (0.40-4.64%), Sphingomonas (0.26-3.85%), Microbacterium (0.01-4.67%) and Aurantimonas (0.04-4.34%), which represent the core microflora in upland rice seeds, served as the dominant genera that coexisted in all the upland rice seeds tested. This study significant for the isolation, screening, functional evaluation, and re-action of various functional microorganisms in upland rice to improve its agronomic traits. It also provides a specific reference for the interaction between microorganisms and plants.
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Affiliation(s)
- Zhishan Wang
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Yongqiang Zhu
- Shanghai-MOST Key Laboratory of Health and Disease Genomics, Chinese National Human Genome Center At Shanghai, Shanghai, 201203, China
| | - Ruixue Jing
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Xianyu Wu
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Ni Li
- State Key Laboratory of Hybrid Rice (Hunan Hybrid Rice Research Center), Changsha, 410125, China
| | - Hai Liu
- State Key Laboratory of Hybrid Rice (Hunan Hybrid Rice Research Center), Changsha, 410125, China
| | - Xiaoxia Zhang
- Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Weiping Wang
- State Key Laboratory of Hybrid Rice (Hunan Hybrid Rice Research Center), Changsha, 410125, China.
| | - Yang Liu
- School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing, 100083, China.
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26
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Mushtaq T, Shah AA, Akram W, Yasin NA. Synergistic ameliorative effect of iron oxide nanoparticles and Bacillus subtilis S4 against arsenic toxicity in Cucurbita moschata: polyamines, antioxidants, and physiochemical studies. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1408-1419. [PMID: 32574074 DOI: 10.1080/15226514.2020.1781052] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The present study was intended to assess the potential of iron oxide nanoparticles (IONPs) and Bacillus subtilis S4 in mitigation of arsenic (As) stress in Cucurbita moschata. Cucurbita moschata seedlings were subjected to As stress for 60 days. Reduced level of growth parameters including photosynthetic pigments, rate of photosynthesis and gas exchange characteristics was observed in seedlings subjected to As stress. However, IONPs and B. subtilis S4 improved growth attributes and proline contents in supplemented C. moschata seedlings. Bacillus subtilis S4 inoculated seedlings showed higher activity of peroxidase (POD) and superoxide dismutase (SOD) under As toxicity. Similarly, the co-application of IONPs and B. subtilis S4 further increased the activity of these antioxidative enzymes. The As stress alleviation in inoculated C. moschata seedlings is credited to reduced levels of hydrogen peroxide (H2O2), malondialdehyde (MDA) and electrolyte leakage (EL) in IONPs and B. subtilis S4-treated plants. Furthermore, synergism between plant growth promoting bacteria (PGPB) and IONPs enhanced the biosynthesis of stress mitigating polyamines including spermidine and putrescine in As-stressed seedlings. Current research reveals that synergistic application of IONPs and B. subtilis S4 is an effective sustainable and ecofriendly approach for alleviation of As stress in C. moschata seedlings.
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Affiliation(s)
- Tarifa Mushtaq
- Department of Botany, University of Narowal, Narowal, Pakistan
| | - Anis Ali Shah
- Department of Botany, University of Narowal, Narowal, Pakistan
| | - Waheed Akram
- Guangdong Key Laboratory for New Technology Research of Vegetables/Vegetable Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China
| | - Nasim Ahmad Yasin
- Senior Superintendent Garden, University of the Punjab, Lahore, Pakistan
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27
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Zhang XX, Whalley PA, Ashton RW, Evans J, Hawkesford MJ, Griffiths S, Huang ZD, Zhou H, Mooney SJ, Whalley WR. A comparison between water uptake and root length density in winter wheat: effects of root density and rhizosphere properties. PLANT AND SOIL 2020. [PMID: 32848280 DOI: 10.1007/s11104-020-04582-5] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
BACKGROUND AND AIMS We aim to quantify the variation in root distribution in a set of 35 experimental wheat lines. We also compared the effect of variation in hydraulic properties of the rhizosphere on water uptake by roots. METHODS We measured the root length density and soil drying in 35 wheat lines in a field experiment. A 3D numerical model was used to predict soil drying profiles with the different root length distributions and compared with measured soil drying. The model was used to test different scenarios of the hydraulic properties of the rhizosphere. RESULTS We showed that wheat lines with no detectable differences in root length density can induce soil drying profiles with statistically significant differences. Our data confirmed that a root length density of at least 1 cm/cm3 is needed to drain all the available water in soil. In surface layers where the root length density was far greater than 1 cm/cm3 water uptake was independent of rooting density due to competition for water. However, in deeper layers where root length density was less than 1 cm/cm3, water uptake by roots was proportional to root density. CONCLUSION In a set of wheat lines with no detectable differences in the root length density we found significant differences in water uptake. This may be because small differences in root density at depth can result in larger differences in water uptake or that the hydraulic properties of the rhizosphere can greatly affect water uptake.
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Affiliation(s)
- X X Zhang
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ UK
| | - P A Whalley
- University of Oxford, Radcliffe Observatory, Andrew Wiles Building, Woodstock Rd, Oxford, OX2 6GG UK
| | - R W Ashton
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ UK
| | - J Evans
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ UK
| | - M J Hawkesford
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ UK
| | - S Griffiths
- John Innes Centre, Norwich Research Park, Norwich, NR4 7UH UK
| | - Z D Huang
- Farmland Irrigation Research Institute, Chinese Academy of Agricultural Sciences, Xinxiang, 453002 Henan China
| | - H Zhou
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD UK
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Sciences, Chinese Academy of Sciences, 71 East Beijing Road, Nanjing, 210008 People's Republic of China
| | - S J Mooney
- School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire LE12 5RD UK
| | - W R Whalley
- Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ UK
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