Lessons from first generation biofuels and implications for the sustainability appraisal of second generation biofuels

Parageobacillus thermoglucosidasius as an emerging thermophilic cell factory

Parageobacillus thermoglucosidasius is a thermophilic and facultatively anaerobic microbe, which is emerging as one of the most promising thermophilic model organisms for metabolic engineering. The use of thermophilic microorganisms for industrial bioprocesses provides the advantages of increased reaction rates and reduced cooling costs for bioreactors compared to their mesophilic counterparts. Moreover, it enables starch or lignocellulose degradation and fermentation to occur at the same temperature in a Simultaneous Saccharification and Fermentation (SSF) or Consolidated Bioprocessing (CBP) approach. Its natural hemicellulolytic capabilities and its ability to convert CO to metabolic energy make P. thermoglucosidasius a potentially attractive host for bio-based processes. It can effectively degrade hemicellulose due to a number of hydrolytic enzymes, carbohydrate transporters, and regulatory elements coded from a genomic cluster named Hemicellulose Utilization (HUS) locus. The growing availability of effective genetic engineering tools in P. thermoglucosidasius further starts to open up its potential as a versatile thermophilic cell factory. A number of strain engineering examples showcasing the potential of P. thermoglucosidasius as a microbial chassis for the production of bulk and fine chemicals are presented along with current research bottlenecks. Ultimately, this review provides a holistic overview of the distinct metabolic characteristics of P. thermoglucosidasius and discusses research focused on expanding the native metabolic boundaries for the development of industrially relevant strains.

Microbial biotechnology and beyond: A roadmap for sustainable development and climate mitigation in the transition from fossil fuels to green chemistry

Our planet, which operates as a closed system, is facing increasing entropy due to human activities such as the overexploitation of natural resources and fossil fuel use. The COP28 in Dubai emphasized the urgency to abandon fossil fuels, recognizing them as the primary cause of human-induced environmental changes, while highlighting the need to transition to renewable energies. We promote the crucial role of microbes for sustaining biogenic cycles to combat climate change and the economic potential of synthetic biology tools for producing diverse non-fossil fuels and chemicals, thus contributing to emission reduction in transport and industry. The shift to 'green chemistry' encounters challenges, derived from the availability of non-food residues and waste (mainly lignocellulosic) as raw material, the construction of cost-effective bioprocessing plants, product recovery from fermentation broths and the utilization of leftover lignin residues for synthesizing new chemicals, aligning with circular economy and sustainable development goals. To meet the Paris Agreement goals, an urgent global shift to low-carbon, renewable sources is imperative, ultimately leading to the cessation of our reliance on fossil fuels.

A review on current advances in the energy and cost effective pretreatments of algal biomass: Enhancement in liquefaction and biofuel recovery

The main downside of utilizing algal biomass for biofuel production is the rigid cell wall which confines the availability of soluble organics to hydrolytic microbes during biofuel conversion. This constraint reduces the biofuel production efficiency of algal biomass. On the other hand, presenting various pretreatment methods before biofuel production affords cell wall disintegration and enhancement in biofuel generation. The potential of pretreatment methods chiefly relies on the extent of biomass liquefaction, energy, and cost demand. In this review, different pretreatments employed to disintegrate algal biomass were conferred in depth with detailed information on their efficiency in enhancing liquefaction and biofuel yield for pilot-scale implementation. Based on this review, it has been concluded that combinative and phase-separated pretreatments provide virtual input in enhancing the biofuel generation based on liquefaction potential, energy, and cost. Future studies should focus on decrement in cost and energy requirement of pretreatment in depth.

Unravelling Metagenomics Approach for Microbial Biofuel Production

Renewable biofuels, such as biodiesel, bioethanol, and biobutanol, serve as long-term solutions to fossil fuel depletion. A sustainable approach feedstock for their production is plant biomass, which is degraded to sugars with the aid of microbes-derived enzymes, followed by microbial conversion of those sugars to biofuels. Considering their global demand, additional efforts have been made for their large-scale production, which is ultimately leading breakthrough research in biomass energy. Metagenomics is a powerful tool allowing for functional gene analysis and new enzyme discovery. Thus, the present article summarizes the revolutionary advances of metagenomics in the biofuel industry and enlightens the importance of unexplored habitats for novel gene or enzyme mining. Moreover, it also accentuates metagenomics potentials to explore uncultivable microbiomes as well as enzymes associated with them.

Palm oil-based bioenergy sustainability and policy in Indonesia and Malaysia: A systematic review and future agendas

This paper reviews previous research on the sustainability and policies of palm oil-based bioenergy in Indonesia and Malaysia. A systematic literature review with a meta-analysis (PRISMA) methodology was performed to evaluate the related articles discussing sustainability and bioenergy policies. This study found 96 articles that mapped the sustainability and policies of bioenergy in Indonesia and Malaysia over the last decade. The sustainability studies were divided into two areas: the environment and socioeconomics. Researchers were more likely to examine environmental factors than socioeconomic factors, specifically focusing on the following environmental indicators: land use conversion, deforestation, and CO₂ emissions. Most policy studies concentrated on sustainability and energy security. Over the last two decades, the development of bioenergy policies in Indonesia and Malaysia has been comparable in terms of geographical position and palm oil production. However, Indonesia's bioenergy policy has tended to be more vigorous and dynamic than Malaysia.

A Summary of Environmental Monitoring Recommendations for Marine Energy Development That Considers Life Cycle Sustainability

Recommendations derived from papers documenting the Triton Field Trials (TFiT) study of marine energy environmental monitoring technology and methods under the Triton Initiative (Triton), as reported in this Special Issue, are summarized here. Additionally, a brief synopsis describes how to apply the TFiT recommendations to establish an environmental monitoring campaign, and provides an overview describing the importance of identifying the optimal time to perform such campaigns. The approaches for tracking and measuring the effectiveness of recommendations produced from large environmental monitoring campaigns among the stakeholder community are discussed. The discussion extends beyond the initial scope of TFiT to encourage discussion regarding marine energy sustainability that includes life cycle assessment and other life cycle sustainability methodologies. The goal is to inspire stakeholder collaboration across topics associated with the marine energy industry, including diversity and inclusion, energy equity, and how Triton’s work connects within the context of the three pillars of energy sustainability: environment, economy, and society.

Design, Implementation and Simulation of a Small-Scale Biorefinery Model

Second-generation biomass is an underexploited resource, which can lead to valuable products in a circular economy. Available locally as food waste, gardening and pruning waste or agricultural waste, second-generation biomass can be processed into high-valued products through a flexi-feed small-scale biorefinery. The flexi-feed and the use of local biomass ensure the continuous availability of feedstock at low logistic costs. However, the viability and sustainability of the biorefinery must be ensured by the design and optimal operation. While the design depends on the available feedstock and the desired products, the optimisation requires the availability of a mathematical model of the biorefinery. This paper details the design and modelling of a small-scale biorefinery in view of its optimisation at a later stage. The proposed biorefinery comprises the following processes: steam refining, anaerobic digestion, ammonia stripping and composting. The models’ integration and the overall biorefinery operation are emphasised. The simulation results assess the potential of the real biowaste collected in a commune in Flanders (Belgium) to produce oligosaccharides, lignin, fibres, biogas, fertiliser and compost. This represents a baseline scenario, which can be subsequently employed in the evaluation of optimised solutions. The outlined approach leads to better feedstocks utilisation and product diversification, raising awareness on the impact and importance of small-scale biorefineries at a commune level.

Bioethanol Production in Poland in the Context of Sustainable Development-Current Status and Future Prospects

The high dependence on imported fuels, the need to reduce greenhouse gas (GHG) emissions and the need to develop a low-carbon economy are reasons for the development of the renewable energy market in Poland. The wider use of biofuels can be a method for reducing oil dependence and reducing CO2 emission. Opportunities to reduce emissions and meet international requirements in the field of environmental protection are seen, among others, in the development of the production and greater use of biocomponents, including bioethanol. This article presents the current state of development in the area of bioethanol production in Poland. An outline of legal regulations in the examined area and statistical data, as well as the largest producers and their production capacity, are presented. The basic time range of analyses covered the years 2015–2019. According to the analyses, liquid biofuels in Poland are used on a small scale, although over 2015–2019, the production of bioethanol as a biocomponent in motor fuels increased by 43,537 tonnes. However, production potential is still underused. In recent years, there have been major changes in the structure of the use of raw materials for bioethanol production. The share of maize has significantly decreased (although it is still dominant in the consumption structure) in favour of waste raw materials.

Addressing the energy crisis: using microbes to make biofuels

Much of the energy being used to power our lives comes from fossil fuels such as coal, natural gas and petroleum. These energy sources are non-renewable, are being exhausted and also pollute the air, water and soil with toxic chemicals. Their mining, transportation, refining and use are associated with a large carbon footprint that contributes significantly to global warming. In addition, the geopolitical complexities surrounding the main fossil fuel producers create risks and uncertainties around the world. Replacing fossil fuels with clean, renewable forms of energy is paramount to creating a sustainable and healthy future, and for laying the foundations for global political stability and prosperity. Using biomass from plants, microbes can produce biofuels that are identical to or perform as well as fossil fuels. In addition of creating sustainable energy, advancing the biofuel industry will create new, high-quality rural jobs whilst improving energy security.

Assesing the Local Biowaste Potential of Rural and Developed Areas Using GIS-Data and Clustering Techniques: Towards a Decision Support Tool

As the chemical and energy producing industries are steadily transitioning towards more sustainable processing practices, renewable biomass resources are becoming increasingly more valuable. Recently, following the realisation that renewable resources for the chemical and energy industry should not compete with food supplies, the use of plant-based biowaste has significantly gained in interest. Due to its inherently variable composition, diffuse distribution, and seasonality, it is of the utmost importance that (potential) biorefinery exploiters are well informed of the biowaste resources that are available in the vicinity of their (planned) biorefinery. Designing a biorefinery in such a way that it can tailor for the locally available biowaste resources, exhibits several compelling advantages. Apart from significantly reduced logistics costs, the usage of local biowaste can be a reciprocal advantage for both the involved community and the biorefinery. In this paper, a GIS-based (Geo-Information System) bio-inventory toolbox is presented. The toolbox is developed to aid the biorefinery designers and decision makers, e.g., governmental bodies, to get an adequate overview of the locally available plant-based biowaste resources and, linked to this, the expected periodical amounts, their composition, and their seasonality. The toolbox presented in this contribution is the first part of a decision support tool for the development of a locally embedded flexi-feed and small-scale biorefinery, additionally consisting out of a process modelling tool, and an optimisation tool. Both of these additional tools will employ the information obtained from the bio-inventory toolbox to simulate and optimise several suitable biorefinery designs. The eventual goal of the decision support tool is to provide users with several optimised biorefinery designs that are tailored for their local setting. The additional toolboxes are detailed elsewhere.

Understanding the Modus Operandi of Class II KNOX Transcription Factors in Secondary Cell Wall Biosynthesis

Lignocellulosic biomass from the secondary cell walls of plants has a veritable potential to provide some of the most appropriate raw materials for producing second-generation biofuels. Therefore, we must first understand how plants synthesize these complex secondary cell walls that consist of cellulose, hemicellulose, and lignin in order to deconstruct them later on into simple sugars to produce bioethanol via fermentation. Knotted-like homeobox (KNOX) genes encode homeodomain-containing transcription factors (TFs) that modulate various important developmental processes in plants. While Class I KNOX TF genes are mainly expressed in the shoot apical meristems of both monocot and eudicot plants and are involved in meristem maintenance and/or formation, Class II KNOXTF genes exhibit diverse expression patterns and their precise functions have mostly remained unknown, until recently. The expression patterns of Class II KNOX TF genes in Arabidopsis, namely KNAT3, KNAT4, KNAT5, and KNAT7, suggest that TFs encoded by at least some of these genes, such as KNAT7 and KNAT3, may play a significant role in secondary cell wall formation. Specifically, the expression of the KNAT7 gene is regulated by upstream TFs, such as SND1 and MYB46, while KNAT7 interacts with other cell wall proteins, such as KNAT3, MYB75, OFPs, and BLHs, to regulate secondary cell wall formation. Moreover, KNAT7 directly regulates the expression of some xylan synthesis genes. In this review, we summarize the current mechanistic understanding of the roles of Class II KNOX TFs in secondary cell wall formation. Recent success with the genetic manipulation of Class II KNOX TFs suggests that this may be one of the biotechnological strategies to improve plant feedstocks for bioethanol production.

Single-Atom Catalysts: A Review of Synthesis Strategies and Their Potential for Biofuel Production

Biofuels have been derived from various feedstocks by using thermochemical or biochemical procedures. In order to synthesise liquid and gas biofuel efficiently, single-atom catalysts (SACs) and single-atom alloys (SAAs) have been used in the reaction to promote it. SACs are made up of single metal atoms that are anchored or confined to a suitable support to keep them stable, while SAAs are materials generated by bi- and multi-metallic complexes, where one of these metals is atomically distributed in such a material. The structure of SACs and SAAs influences their catalytic performance. The challenge to practically using SACs in biofuel production is to design SACs and SAAs that are stable and able to operate efficiently during reaction. Hence, the present study reviews the system and configuration of SACs and SAAs, stabilisation strategies such as mutual metal support interaction and geometric coordination, and the synthesis strategies. This paper aims to provide useful and informative knowledge about the current synthesis strategies of SACs and SAAs for future development in the field of biofuel production.

Production of Bioethanol—A Review of Factors Affecting Ethanol Yield

Fossil fuels are a major contributor to climate change, and as the demand for energy production increases, alternative sources (e.g., renewables) are becoming more attractive. Biofuels such as bioethanol reduce reliance on fossil fuels and can be compatible with the existing fleet of internal combustion engines. Incorporation of biofuels can reduce internal combustion engine (ICE) fleet carbon dioxide emissions. Bioethanol is typically produced via microbial fermentation of fermentable sugars, such as glucose, to ethanol. Traditional feedstocks (e.g., first-generation feedstock) include cereal grains, sugar cane, and sugar beets. However, due to concerns regarding food sustainability, lignocellulosic (second-generation) and algal biomass (third-generation) feedstocks have been investigated. Ethanol yield from fermentation is dependent on a multitude of factors. This review compares bioethanol production from a range of feedstocks, and elaborates on available technologies, including fermentation practices. The importance of maintaining nutrient homeostasis of yeast is also examined. The purpose of this review is to provide industrial producers and policy makers insight into available technologies, yields of bioethanol achieved by current manufacturing practices, and goals for future innovation.

Role of Biofuels in Energy Transition, Green Economy and Carbon Neutrality

Modern civilization is heavily reliant on petroleum-based fuels to meet the energy demand of the transportation sector. However, burning fossil fuels in engines emits greenhouse gas emissions that harm the environment. Biofuels are commonly regarded as an alternative for sustainable transportation and economic development. Algal-based fuels, solar fuels, e-fuels, and CO2-to-fuels are marketed as next-generation sources that address the shortcomings of first-generation and second-generation biofuels. This article investigates the benefits, limitations, and trends in different generations of biofuels through a review of the literature. The study also addresses the newer generation of biofuels highlighting the social, economic, and environmental aspects, providing the reader with information on long-term sustainability. The use of nanoparticles in the commercialization of biofuel is also highlighted. Finally, the paper discusses the recent advancements that potentially enable a sustainable energy transition, green economy, and carbon neutrality in the biofuel sector.

Genome-Wide Investigation of the NAC Transcription Factor Family in Miscanthus sinensis and Expression Analysis Under Various Abiotic Stress

The NAC transcription factor family is deemed to be a large plant-specific gene family that plays important roles in plant development and stress response. Miscanthus sinensis is commonly planted in vast marginal land as forage, ornamental grass, or bioenergy crop which demand a relatively high resistance to abiotic stresses. The recent release of a draft chromosome-scale assembly genome of M. sinensis provided a basic platform for the genome-wide investigation of NAC proteins. In this study, a total of 261 M. sinensis NAC genes were identified and a complete overview of the gene family was presented, including gene structure, conserved motif compositions, chromosomal distribution, and gene duplications. Results showed that gene length, molecular weights (MW), and theoretical isoelectric points (pI) of NAC family were varied, while gene structure and motifs were relatively conserved. Chromosomal mapping analysis found that the M. sinensis NAC genes were unevenly distributed on 19 M. sinensis chromosomes, and the interchromosomal evolutionary analysis showed that nine pairs of tandem duplicates genes and 121 segmental duplications were identified, suggesting that gene duplication, especially segmental duplication, is possibly associated with the amplification of M. sinensis NAC gene family. The expression patterns of 14 genes from M. sinensis SNAC subgroup were analyzed under high salinity, PEG, and heavy metals, and multiple NAC genes could be induced by the treatment. These results will provide a very useful reference for follow-up study of the functional characteristics of NAC genes in the mechanism of stress-responsive and potential roles in the development of M. sinensis.

Transcriptome characterization of candidate genes related to chromium uptake, transport and accumulation in Miscanthus sinensis

Miscanthus sinensis is a C4 perennial grass species that is widely used as forage, ornamental grass and bioenergy crop due to its broad adaption and great biological traits. Recent studies indicated that M. sinensis could also grow in marginal lands which were contaminated with heavy metals, and exhibited important ecological restoration potential. In this study, transcriptome characterization of candidate genes related to chromium (Cr) uptake, transport and accumulation in M. sinensis were employed to investigate the molecular mechanism of plant tolerance to heavy metal stress. The result showed that following treatment of 200 mg/L of Cr, plant roots could accumulate most Cr and localize mainly in cell walls and soluble fractions, whereas Cr in stems and leaves was primarily in soluble fractions. A total of 83,645 differentially expressed genes (DEGs) were obtained after the treatment. Many genes involved in heavy metal transport, metal ion chelation and photosynthesis were found to be Cr-induced DEGs. Co-expression and weighted correlation network analysis revealed that Glutathion metabolism and ABC transporters pathways play an important role in Cr tolerance of M. sinensis. A hypothesis schematic diagram for the Cr uptake, transport and accumulation of M. sinensis cells were suggested, which could provide a molecular and genetic basis for future candidate genes validation and breeding of such crops.

Review: Why and how to regulate animal production and consumption: The case of the European Union

Throughout the world, animal production faces huge sustainability challenges. The latter are exacerbated in the European Union (EU) by consumption issues linked, in particular, to the health and environmental impacts of meat consumption, and by the increasing societal concerns linked to animal welfare. Simultaneously, animal production may also provide benefits, notably from an economic and nutritional point of view. Some livestock systems, notably grass-based systems, may also offer positive climatic and environmental effects. Animal production is highly regulated in the EU, whereas the consumption of animal products is not (or very lightly) regulated. Many of the negative and positive effects are public goods that are not well taken into account by private actors and markets. Thus, there is legitimacy and scope for public policies aimed at reducing the damage and increasing the benefits of animal production and consumption. The last part of the paper explains how this could be achieved in the EU through a significantly revised and extended Common Agricultural Policy that more closely follows the principles of public economics. Public regulation principles that are proposed have a more general scope and can be adapted to other livestock contexts.

Systematic review on effects of bioenergy from edible versus inedible feedstocks on food security

Achieving food security is a critical challenge of the Anthropocene that may conflict with environmental and societal goals such as increased energy access. The “fuel versus food” debate coupled with climate mitigation efforts has given rise to next-generation biofuels. Findings of this systematic review indicate just over half of the studies (56% of 224 publications) reported a negative impact of bioenergy production on food security. However, no relationship was found between bioenergy feedstocks that are edible versus inedible and food security (P value = 0.15). A strong relationship was found between bioenergy and type of food security parameter (P value < 0.001), sociodemographic index of study location (P value = 0.001), spatial scale (P value < 0.001), and temporal scale (P value = 0.017). Programs and policies focused on bioenergy and climate mitigation should monitor multiple food security parameters at various scales over the long term toward achieving diverse sustainability goals.

Fuel Properties of Pongamia (Milletia pinnata) Seeds and Pods Grown in Hawaii

Pongamia, a leguminous, oilseed-bearing tree, is a potential resource for renewable fuels in general and sustainable aviation fuel in particular. The present work characterizes physicochemical properties of reproductive materials (seeds and pods) from pongamia trees grown in different environments at five locations on the island of Oahu, Hawaii, USA. Proximate and ultimate analyses, heating value, and elemental composition of the seeds, pods, and de-oiled seed cake were determined. The oil content of the seeds and the properties of the oil were determined using American Society for Testing and Materials and American Oil Chemist's Society methods. The seed oil content ranged from 19 to 33 wt % across the trees and locations. Oleic (C18:1) was the fatty acid present in the greatest abundance (47 to 60 wt %), and unsaturated fatty acids accounted for 77 to 83 wt % of the oil. Pongamia oil was found to have similar characteristics as other plant seed oils (canola and jatropha) and would be expected to be well suited for hydroprocessed production of sustainable aviation fuel. Nitrogen-containing species is retained in the solid phase during oil extraction, and the de-oiled seed cake exhibited enrichment in the N content, ∼5 to 6%, in comparison with the parent seed. The pods would need further treatment before being used as fuel for combustion or gasification owing to the high potassium and chlorine contents.

Bacterial wax synthesis

Biological wax esters offer a sustainable, renewable and biodegradable alternative to many fossil fuel derived chemicals including plastics and paraffins. Many species of bacteria accumulate waxes with similar structure and properties to highly desirable animal and plant waxes such as Spermaceti and Jojoba oils, the use of which is limited by resource requirements, high cost and ethical concerns. While bacterial fermentations overcome these issues, a commercially viable bacterial wax production process would require high yields and renewable, affordable feedstock to make it economically competitive and environmentally beneficial. This review describes recent progress in wax ester generation in both wild type and genetically engineered bacteria, with a focus on comparing substrates and quantifying obtained waxes. The full breadth of wax accumulating species is discussed, with emphasis on species generating high yields and utilising renewable substrates. Key areas of the field that have, thus far, received limited attention are highlighted, such as waste stream valorisation, mixed microbial cultures and efficient wax extraction, as, until effectively addressed, these will slow progress in creating commercially viable wax production methods.

Sustainable Production of Microbial Isoprenoid Derived Advanced Biojet Fuels Using Different Generation Feedstocks: A Review

As the fastest mode of transport, the aircraft is a major driver for globalization and economic growth. The development of alternative advanced liquid fuels is critical to sustainable development within the sector. Such fuels should be compatible with existing infrastructure and derived from second generation feedstocks to avoid competition with food markets. With properties similar to petroleum based fuels, isoprenoid derived compounds such as limonene, bisabolane, farnesane, and pinene dimers are of increasing interest as "drop-in" replacement jet fuels. In this review potential isoprenoid derived jet fuels and progress toward their microbial production was discussed in detail. Although substantial advancements have been achieved, the use of first generation feedstocks remains ubiquitous. Lignocellulosic biomass is the most abundant raw material available for biofuel production, however, technological constraints associated with its pretreatment and saccharification hinder its economic feasibility for low-value commodity production. Non-conventional microbes with novel characteristics including cellulolytic bacteria and fungi capable of highly efficient lignocellulose degradation and xylose fermenting oleaginous yeast with enhanced lignin-associated inhibitor tolerance were investigated as alternatives to traditional model hosts. Finally, innovative bioprocessing methods including consolidated bioprocessing and sequential bioreactor approaches, with potential to capitalize on such unique natural capabilities were considered.

Potential of Straw for Energy Purposes in Poland—Forecasts Based on Trend and Causal Models

The mitigation of climate change poses a major challenge to the legal framework which aims to stimulate the development of renewable energy sources. The European Union’s direction for the use of renewable energy is distributed generation and an increased use of by-products and organic waste, especially in the production of next-generation biofuels. The main aim of this study is to evaluate the production potential of straw in Poland and the possibility of its use for energy purposes, including a forecast for 2030, on the assumption that the management of this resource is in accordance with the provisions of the Polish Code for Good Agriculture Practice. In Poland, in the years 1999–2018, the average annual surplus of straw harvested over agricultural consumption equalled 12.5 million tons (4.2 Mtoe). Its largest surpluses were in the Dolnośląskie, Kujawsko-Pomorskie, Lubelskie, Wielkopolskie, and Zachodniopomorskie voivodeships (NUTS2). Based on the developed panel models, forecasts for straw surpluses in Poland are presented in three perspectives: realistic, pessimistic, and optimistic. The forecasts show regional differentiation until 2030. Each of the three perspectives indicate a slow increase in these surpluses, and depending on the adopted version, it will range from 10.6% to 21.9%.

Aspergillus sydowii: Genome Analysis and Characterization of Two Heterologous Expressed, Non-redundant Xylanases

A prerequisite for the transition toward a biobased economy is the identification and development of efficient enzymes for the usage of renewable resources as raw material. Therefore, different xylanolytic enzymes are important for efficient enzymatic hydrolysis of xylan-heteropolymers. A powerful tool to overcome the limited enzymatic toolbox lies in exhausting the potential of unexplored habitats. By screening a Vietnamese fungal culture collection of 295 undiscovered fungal isolates, 12 highly active xylan degraders were identified. One of the best xylanase producing strains proved to be an Aspergillus sydowii strain from shrimp shell (Fsh102), showing a specific activity of 0.6 U/mg. Illumina dye sequencing was used to identify our Fsh102 strain and determine differences to the A. sydowii CBS 593.65 reference strain. With activity based in-gel zymography and subsequent mass spectrometric identification, three potential proteins responsible for xylan degradation were identified. Two of these proteins were cloned from the cDNA and, furthermore, expressed heterologously in Escherichia coli and characterized. Both xylanases, were entirely different from each other, including glycoside hydrolases (GH) families, folds, substrate specificity, and inhibition patterns. The specific enzyme activity applying 0.1% birch xylan of both purified enzymes were determined with 181.1 ± 37.8 or 121.5 ± 10.9 U/mg for xylanase I and xylanase II, respectively. Xylanase I belongs to the GH11 family, while xylanase II is member of the GH10 family. Both enzymes showed typical endo-xylanase activity, the main products of xylanase I are xylobiose, xylotriose, and xylohexose, while xylobiose, xylotriose, and xylopentose are formed by xylanase II. Additionally, xylanase II showed remarkable activity toward xylotriose. Xylanase I is stable when stored up to 30°C and pH value of 9, while xylanase II started to lose significant activity stored at pH 9 after exceeding 3 days of storage. Xylanase II displayed about 40% activity when stored at 50°C for 24 h. The enzymes are tolerant toward mesophilic temperatures, while acting in a broad pH range. With site directed mutagenesis, the active site residues in both enzymes were confirmed. The presented activity and stability justify the classification of both xylanases as highly interesting for further development.

Using a Crop Model to Benchmark Miscanthus and Switchgrass

Crop yields are important items in the economic performance and the environmental impacts of second-generation biofuels. Since they strongly depend on crop management and pedoclimatic conditions, it is important to compare candidate feedstocks to select the most appropriate crops in a given context. Agro-ecosystem models offer a prime route to benchmark crops, but have been little tested from this perspective thus far. Here, we tested whether an agro-ecosystem model (CERES-EGC) was specific enough to capture the differences between miscanthus and switchgrass in northern Europe. The model was compared to field observations obtained in seven long-term trials in France and the UK, involving different fertilizer input rates and harvesting dates. At the calibration site (Estrées-Mons), the mean deviations between simulated and observed crop biomass yields for miscanthus varied between −0.3 t DM ha−1 and 4.2 t DM ha−1. For switchgrass, simulated yields were within 1.0 t DM ha−1 of the experimental data. Observed miscanthus yields were higher than switchgrass yields in most sites and for all treatments, with one exception. Overall, the model captured the differences between both crops adequately, with a mean deviation of 0.46 t DM ha−1, and could be used to guide feedstock selections over larger biomass supply areas.

Characterization of highly active 2-keto-3-deoxy-L-arabinonate and 2-keto-3-deoxy-D-xylonate dehydratases in terms of the biotransformation of hemicellulose sugars to chemicals

2-keto-3-L-arabinonate dehydratase (L-KdpD) and 2-keto-3-D-xylonate dehydratase (D-KdpD) are the third enzymes in the Weimberg pathway catalyzing the dehydration of respective 2-keto-3-deoxy sugar acids (KDP) to α-ketoglutaric semialdehyde (KGSA). The Weimberg pathway has been explored recently with respect to the synthesis of chemicals from L-arabinose and D-xylose. However, only limited work has been done toward characterizing these two enzymes. In this work, several new L-KdpDs and D-KdpDs were cloned and heterologously expressed in Escherichia coli. Following kinetic characterizations and kinetic stability studies, the L-KdpD from Cupriavidus necator (CnL-KdpD) and D-KdpD from Pseudomonas putida (PpD-KdpD) appeared to be the most promising variants from each enzyme class. Magnesium had no effect on CnL-KdpD, whereas increased activity and stability were observed for PpD-KdpD in the presence of Mg2+. Furthermore, CnL-KdpD was not inhibited in the presence of L-arabinose and L-arabinonate, whereas PpD-KdpD was inhibited with D-xylonate (I50 of 75 mM), but not with D-xylose. Both enzymes were shown to be highly active in the one-step conversions of L-KDP and D-KDP. CnL-KdpD converted > 95% of 500 mM L-KDP to KGSA in the first 2 h while PpD-KdpD converted > 90% of 500 mM D-KDP after 4 h. Both enzymes in combination were able to convert 83% of a racemic mixture of D,L-KDP (500 mM) after 4 h, with both enzymes being specific toward the respective stereoisomer. Key points • L-KdpDs and D-KdpDs are specific toward L- and D-KDP, respectively. • Mg2+affected activity and stabilities of D-KdpDs, but not of L-KdpDs. • CnL-KdpD and PpD-KdpD converted 0.5 M of each KDP isomer reaching 95 and 90% yield. • Both enzymes in combination converted 0.5 M racemic D,L-KDP reaching 83% yield.

Consolidated bioprocessing of raw starch to ethanol by Saccharomyces cerevisiae: Achievements and challenges

Recent advances in amylolytic strain engineering for starch-to-ethanol conversion have provided a platform for the development of raw starch consolidated bioprocessing (CBP) technologies. Several proof-of-concept studies identified improved enzyme combinations, alternative feedstocks and novel host strains for evaluation and application under fermentation conditions. However, further research efforts are required before this technology can be scaled up to an industrial level. In this review, different CBP approaches are defined and discussed, also highlighting the role of auxiliary enzymes for a supplemented CBP process. Various achievements in the development of amylolytic Saccharomyces cerevisiae strains for CBP of raw starch and the remaining challenges that need to be tackled/pursued to bring yeast raw starch CBP to industrial realization, are described. Looking towards the future, it provides potential solutions to develop more cost-effective processes that include cheaper substrates, integration of the 1G and 2G economies and implementing a biorefinery concept where high-value products are also derived from starchy substrates.

Supercritical Fluids: A Promising Technique for Biomass Pretreatment and Fractionation

Lignocellulosic biomasses are primarily composed of cellulose, hemicelluloses and lignin and these biopolymers are bonded together in a heterogeneous matrix that is highly recalcitrant to chemical or biological conversion processes. Thus, an efficient pretreatment technique must be selected and applied to this type of biomass in order to facilitate its utilization in biorefineries. Classical pretreatment methods tend to operate under severe conditions, leading to sugar losses by dehydration and to the release of inhibitory compounds such as furfural (2-furaldehyde), 5-hydroxy-2-methylfurfural (5-HMF), and organic acids. By contrast, supercritical fluids can pretreat lignocellulosic materials under relatively mild pretreatment conditions, resulting in high sugar yields, low production of fermentation inhibitors and high susceptibilities to enzymatic hydrolysis while reducing the consumption of chemicals, including solvents, reagents, and catalysts. This work presents a review of biomass pretreatment technologies, aiming to deliver a state-of-art compilation of methods and results with emphasis on supercritical processes.

Sustainable Residential Energy Supply: A Literature Review-Based Morphological Analysis

The decarbonization of the energy system will bring substantial changes, from supranational regions to residential sites. This review investigates sustainable energy supply, applying a multi-sectoral approach from a residential site perspective, especially with focus on identifying crucial, plausible factors and their influence on the operation of the system. The traditionally separated mobility, heat, and electricity sectors are examined in more detail with regard to their decarbonization approaches. For every sector, available technologies, demand, and future perspectives are described. Furthermore, the benefits of cross-sectoral integration and technology coupling are examined, besides challenges to the electricity grid due to upcoming technologies, such as electric vehicles and heat pumps. Measures such as transport mode shift and improving building insulation can reduce the demand in their respective sector, although their impact remains uncertain. Moreover, flexibility measures such as Power to X or vehicle to grid couple the electricity sector to other sectors such as the mobility and heat sectors. Based on these findings, a morphological analysis is conducted. A morphological box is presented to summarize the major characteristics of the future residential energy system and investigate mutually incompatible pairs of factors. Lastly, the scenario space is further analyzed in terms of annual energy demand for a district.

Soil & Water Assessment Tool (SWAT) simulated hydrological impacts of land use change from temperate grassland to energy crops: A case study in western UK

When considering the large-scale deployment of bioenergy crops, it is important to understand the implication for ecosystem hydrological processes and the influences of crop type and location. Based on the potential for future land use change (LUC), the 10,280 km2 West Wales Water Framework Directive River Basin District (UK) was selected as a typical grassland dominated district, and the Soil & Water Assessment Tool (SWAT) hydrology model with a geographic information systems interface was used to investigate implications for different bioenergy deployment scenarios. The study area was delineated into 855 sub-basins and 7,108 hydrological response units based on rivers, soil type, land use, and slope. Changes in hydrological components for two bioenergy crops (Miscanthus and short rotation coppice, SRC) planted on 50% (2,192 km2) or 25% (1,096 km2) of existing improved pasture are quantified. Across the study area as a whole, only surface run-off with SRC planted at the 50% level was significantly impacted, where it was reduced by up to 23% (during April). However, results varied spatially and a comparison of annual means for each sub-basin and scenario revealed surface run-off was significantly decreased and baseflow significantly increased (by a maximum of 40%) with both Miscanthus and SRC. Evapotranspiration was significantly increased with SRC (at both planting levels) and water yield was significantly reduced with SRC (at the 50% level) by up to 5%. Effects on streamflow were limited, varying between -5% and +5% change (compared to baseline) in the majority of sub-basins. The results suggest that for mesic temperate grasslands, adverse effects from the drying of soil and alterations to streamflow may not arise, and with surface run-off reduced and baseflow increased, there could, depending on crop location, be potential benefits for flood and erosion mitigation.

Catalytic thermal degradation of Chlorella vulgaris: Evolving deep neural networks for optimization

The aim of this study is to identify the optimum thermal conversion of Chlorella vulgaris with neuro-evolutionary approach. A Progressive Depth Swarm-Evolution (PDSE) neuro-evolutionary approach is proposed to model the Thermogravimetric analysis (TGA) data of catalytic thermal degradation of Chlorella vulgaris. Results showed that the proposed method can generate predictions which are more accurate compared to other conventional approaches (>90% lower in Root Mean Square Error (RMSE) and Mean Bias Error (MBE)). In addition, Simulated Annealing is proposed to determine the optimal operating conditions for microalgae conversion from multiple trained ANN. The predicted optimum conditions were reaction temperature of 900.0 °C, heating rate of 5.0 °C/min with the presence of HZSM-5 zeolite catalyst to obtain 88.3% of Chlorella vulgaris conversion.

Bioethanol production from waste lignocelluloses: A review on microbial degradation potential

Tremendous explosion of population has led to about 200% increment of total energy consumptions in last twenty-five years. Apart from conventional fossil fuel as limited energy source, alternative non-conventional sources are being explored worldwide to cater the energy requirement. Lignocellulosic biomass conversion for biofuel production is an important alternative energy source due to its abundance in nature and creating less harmful impacts on the environment in comparison to the coal or petroleum-based sources. However, lignocellulose biopolymer, the building block of plants, is a recalcitrant substance and difficult to break into desirable products. Commonly used chemical and physical methods for pretreating the substrate are having several limitations. Whereas, utilizing microbial potential to hydrolyse the biomass is an interesting area of research. Because of the complexity of substrate, several enzymes are required that can act synergistically to hydrolyse the biopolymer producing components like bioethanol or other energy substances. Exploring a range of microorganisms, like bacteria, fungi, yeast etc. that utilizes lignocelluloses for their energy through enzymatic breaking down the biomass, is one of the options. Scientists are working upon designing organisms through genetic engineering tools to integrate desired enzymes into a single organism (like bacterial cell). Studies on designer cellulosomes and bacteria consortia development relating consolidated bioprocessing are exciting to overcome the issue of appropriate lignocellulose digestions. This review encompasses up to date information on recent developments for effective microbial degradation processes of lignocelluloses for improved utilization to produce biofuel (bioethanol in particular) from the most plentiful substances of our planet.

Arbuscular Mycorrhizal Fungi Confer Salt Tolerance in Giant Reed (Arundo donax L.) Plants Grown Under Low Phosphorus by Reducing Leaf Na+ Concentration and Improving Phosphorus Use Efficiency

Salinization is one of the major causes of agricultural soil degradation worldwide. In arid and semi-arid regions with calcareous soils, phosphorus (P) deficiency further worsens the quality of salinized soils. Nonetheless, nutrient poor soils could be suitable of producing second-generation energy crops. Due to its high biomass production, Arundo donax L. (giant reed) is one of the most promising species for energy and second-generation biofuel production. A. donax can be propagated by micropropagation, an in vitro technique that produces high number of homogeneous plantlets. However, crop establishment is often compromised due to poor plantlet acclimatization to the soil environment. Arbuscular mycorrhizal fungi (AM) are components of soil-plant systems able to increase root phosphorus uptake and to confer the plant an increase tolerance to salinity with a consequent enhancement effect of plant growth and yield. In the present study, the relative importance of the early symbiosis establishment between AM fungi and A. donax micropropagated plantlets in the response to salt stress under low phosphorus availability was determined. A commercial inoculum which contained two different AM fungi species: Rhizophagus intraradices and Funneliformis mosseae was used. AM-symbionts (AM) and non-symbionts plants were grown at two phosphorus [2.5 μM (C) and 0.5 mM (P)] and three NaCl (1, 75 and 150 mM) concentrations in a room chamber under controlled conditions. After 5 weeks, AM root colonization was 60, 26 and 15% in 1, 75 and 150 mM NaCl-treated plants, respectively. At 1 and 75 mM NaCl, AM plants showed increased growth. In all saline treatments, AM plants had decreased Na+ uptake, Na+ root-to-shoot translocation, Na+/K+ ratio and increased P and K use efficiencies with respect to C and P plants. AM improved the nutritional status of A. donax plants by enhancing nutrient use efficiency rather than nutrient uptake. Increased phosphorus use efficiency in AM plants could have benefited ion (Na+ and K+) uptake and/or allocation and ultimately ameliorate the plant's response to saline conditions.

Evaluation of Marine Synechococcus for an Algal Biorefinery in Arid Regions

Implementing microalgae biorefinery in arid environments requires utilization of strains that can grow at high temperatures (above 28 °C) and salinity levels (above 30 ppt). In this study, we investigate the newly isolated seawater strain, Synechococcus, native to the United Arab Emirates, and evaluate its value as a perspective organism for cultivation (for fuel and bio-products) in regions with freshwater scarcity. The strain displayed tolerance to a wide range of temperature (22–37 °C) and salinity (20–41 ppt), with maximum biomass concentration of 0.72 g L−1 and a maximum growth rate of 82 mg L−1 d−1 at 25 °C and 33 ppt salinity. Lipids accumulation reached up to 26% of dry weight in nitrogen-depleted conditions (with 1.8 mM of nitrates addition to the media), whereas protein content exceeded 50% dry weight. In this study, harvesting is investigated using three chemical agents: Ferric chloride, sodium hydroxide, and chitosan. Cell disruption is analyzed for four distinct treatments: Enzymatic, alkaline, ultrasonic, and hydrothermal. Among tested methods, flocculation with sodium hydroxide and ultrasonication were found to be the most efficient techniques for harvesting and cell disruption, respectively. The growth characteristics of the local strain and the potential to derive protein and lipids from it makes it a promising biomass in a biorefinery context.

Stakeholders’ Interests and Perceptions of Bioeconomy Monitoring Using a Sustainable Development Goal Framework

The bioeconomy as an industrial metabolism based on renewable resources is characterized by, not intrinsic, but rather potential benefits for global sustainability, depending on many factors and actors. Hence, an appropriate systematic monitoring of its development is vital and complexly linked to Sustainable Development Goals (SDGs) as well as diverse stakeholder expectations. To structure a framework of the important aspects of such a monitoring system, we conducted a series of stakeholder workshops to assess the relevance of SDGs for the bioeconomy. Our results show how the complexities of these issues are perceived by 64 stakeholders, indicating significant commonalities and differences among six SDGs, including specific interests, perceptions, and, in some cases, counterintuitive and contradictory issues. Eventually, the idea of a bioeconomy is a question of the perception of ends and means of a societal transformation toward holistic sustainability. Global implications like trade-offs, hunger, poverty, and inequalities are aspects of high relevance for monitoring of bioeconomy regions in which they actually do not seem to be substantial.

Co-digestion of Laminaria digitata with cattle manure: A unimodel simulation study of both batch and continuous experiments

This work investigated the thermophilic (55 °C) co-digestion performance both in batch and continuous mode operation. The biochemical methane potentials of L. digitata and cattle manure were 308 ± 24 and 203 ± 33 mL CH4/g VS, respectively. The optimum co-digestion feedstock ratio was found to be 80% macroalgae: 20% manure on a volatile solids basis, which produced 290 ± 19 mL CH4/g VS under long-term and stable continuous operation at an organic loading rate of 2 g VS/L/d and hydraulic retention time of 15 days. Simulations of the batch and continuous experiments were, for the first time, carried out using an integrated anaerobic bioconversion model without structural modifications. Close fits between measured and simulated data provided mutual confirmation of experimental reliability and model robustness, and provided new perspectives for the use of the software tool.

An alkaline active feruloyl-CoA synthetase from soil metagenome as a potential key enzyme for lignin valorization strategies

Ferulic acid (FA), a low-molecular weight aromatic compound derived from lignin, represents a high-value molecule, used for applications in the cosmetic and pharmaceutical industries. FA can be further enzymatically converted in other commercially interesting molecules, such as vanillin and bioplastics. In several organisms, these transformations often start with a common step of FA activation via CoA-thioesterification, catalyzed by feruloyl-CoA synthetases (Fcs). In this context, these enzymes are of biotechnological interest for conversion of lignin-derived FA into high value chemicals. In this study, we describe the first structural characterization of a prokaryotic Fcs, named FCS1, isolated from a lignin-degrading microbial consortium. The FCS1 optimum pH and temperature were 9 and 37°C, respectively, with Km of 0.12 mM and Vmax of 36.82 U/mg. The circular dichroism spectra indicated a notable secondary structure stability at alkaline pH values and high temperatures. This secondary structure stability corroborates the activity data, which remains high until pH 9. The Small Angle X-Ray Scattering analyses resulted on the tertiary/quaternary structure and the low-resolution envelope in solution of FCS1, which was modeled as a homodimer using the hyperthermophilic nucleoside diphosphate-forming acetyl-CoA synthetase from Candidatus Korachaeum cryptofilum. This study contributes to the field of research by establishing the first biophysical and structural characterization for Fcs, and our data may be used for comparison against novel enzymes of this class that to be studied in the future.

Enacting Responsibilities in Landscape Design: The Case of Advanced Biofuels

In this article, we explore the opportunities and challenges of landscape approaches through the lens of responsible research and innovation (RRI). We use the case of transport biofuels to reflect on the capacity of landscape approaches to support the governance of emerging technologies. The case study, developed in the region of Sardinia, Italy, consists of a landscape design process for the implementation of biofuel technologies that rely on the use of non-food dedicated crops and agricultural residues. By using non-food feedstocks, the biofuel project aims to avoid competition with food production and achieve sustainability goals. Through the discussion of key dimensions of RRI in relation to this case, the article puts forward a set of critical aspects of landscape design processes that require further attention from theorists and practitioners in the field of landscape-based planning. These include the power imbalance that exists between the diverse actors involved in project activities, a need for improving the flexibility of the configuration of socio-technical systems, revising assumptions on ‘valid’ knowledge, and improving the deliberative component of planning processes.