Phytotoxicity of petroleum hydrocarbons: Sources, impacts and remediation strategies

Petroleum hydrocarbons and colored dissolved organic matter shape marine oil-degrading microbiota in different patterns

Both petroleum hydrocarbons (PHCs) from oil pollution and colored dissolved organic matter (CDOM) have great influences on the marine microbial community as carbon source factors. However, their combined effects and the specific influence patterns have been kept unclear. This study selected the northeastern South China Sea (NSCS), a typical oil contaminated area, and investigated the characteristics of oil-degrading microbiota in the seawaters by high-throughput sequencing and the relationships with PHCs and CDOM as well as other environmental factors. The results showed the oil pollution had induced the enrichment of oil-degrading bacteria and oil-degrading functional genes, resulting in the core function of oil-degrading microbiota for shaping the microbial community. The Mantel test indicated carbon source factors played the dominant role in shaping the oil-degrading microbiota, compared with geographical distance and other non‑carbon source factors. The influence patterns and strength of PHCs and CDOM on oil-degrading microbiota were further comprehensively analyzed. PHCs played a driving role in the differentiation of oil-degrading microbiota, while CDOM played a stabilizing role for the community similarity. The constructed structural equation model confirmed their distinct influence patterns and also explored the mediating effects of bulk organic carbon. This work not only revealed the important impact of oil pollution on marine microbial communities, but also made people realize the self-regulation ability of the marine environment through the endogenous organic matter.

Improved chickpea growth, physiology, nutrient assimilation and rhizoremediation of hydrocarbons by bacterial consortia

BACKGROUND

Soil pollution by petroleum hydrocarbons (PHCs) reduces yield by changing the physico-chemical properties of soil and plants due to PHCs' biotoxicity and persistence. Thus, removing PHCs from the soil is crucial for ecological sustainability. Microbes-assisted phytoremediation is an economical and eco-friendly solution. The current work aimed to develop and use bacterial consortia (BC) for PHCs degradation and plant growth enhancement in hydrocarbon-contaminated soil. Initially, the enriched microbial cultures (that were prepared from PHCs-contaminated soils from five distinct regions) were obtained via screening through microcosm experiments. Afterward, two best microbial cultures were tested for PHCs degradation under various temperature and pH ranges. After culture optimization, isolation and characterization of bacterial strains were done to construct two BC. These constructed BC were tested in a pot experiment for hydrocarbons degradation and chickpea growth in PHCs contaminated soil.

RESULTS

Findings revealed that PHCs exerted significant phytotoxic effects on chickpea growth and physiology when cultivated in PHCs contaminated soil, reducing agronomic and physiological traits by 13-29% and 12-43%, respectively. However, in the presence of BC, the phytotoxic impacts of PHCs on chickpea plants were reduced, resulting in up to 24 - 35% improvement in agronomic and physiological characteristics as compared to un-inoculated contaminated controls. Furthermore, the bacterial consortia boosted chickpea's nutritional absorption and antioxidant mechanism. Most importantly, chickpea plants phytoremediated 52% of the initial PHCs concentration; however, adding BC1 and BC2 with chickpea plants further increased this removal and remediated 74% and 80% of the initial PHCs concentration, respectively.

CONCLUSION

In general, BC2 outperformed BC1 (with few exceptions) in promoting plant growth and PHCs elimination. Therefore, using multi-trait BC for PHCs degradation and plant growth improvement under PHCs stress may be an efficient and environmentally friendly strategy to deal with PHCs pollution and toxicity.

Integration of physiology, genomics and microbiomics analyses reveal the biodegradation mechanism of petroleum hydrocarbons by Medicago sativa L. and growth-promoting bacterium Rhodococcus erythropolis KB1

Despite the effectiveness of microbial-phytoremediation for remediating total petroleum hydrocarbons (TPH)-contaminated soil, the underlying mechanisms remain elusive. This study investigated the whole-genome and biological activity of Rhodococcus erythropolis KB1, revealing its plant growth promotion (PGP), TPH degradation, and stress resistance capabilities. Phytoremediation (using alfalfa) and plant-microbial remediation (using alfalfa and KB1) were employed to degrade TPH. The highest TPH degradation rate, reaching 95%, was observed with plant-microbial remediation. This is attributed to KB1's ability to promote alfalfa growth, induce the release of signaling molecules to activate plant antioxidant enzymes, actively recruit TPH-degrading bacteria (e.g., Sphingomonas, Pseudomonas, C1-B045), and increase soil nitrogen and phosphorus levels, thereby accelerating TPH degradation by both plants and microorganisms. This study demonstrates that R. erythropolis KB1 holds great potential for enhancing the remediation of TPH-contaminated soil through its multifaceted mechanisms, particularly in plant-microbial remediation strategies, providing valuable theoretical support for the application of this technology.

Ecotoxicological effects, human and animal health risks of pollution and exposure to waste engine oils: a review

Waste engine oils are hazardous waste oils originating from the transportation sector and industrial heavy-duty machinery operations. Improper handling, disposal, and miscellaneous misuses cause significant air, soil, sediments, surface water, and groundwater pollution. Occupational exposure by prolonged and repeated contact poses direct or indirect health risks, resulting in short-term (acute) or long-term (chronic) toxicities. Soil pollution causes geotoxicity by disrupting the biocenosis and physicochemical properties of the soil, and phytotoxicity by impairing plant growth, physiology and metabolism. Surface water pollution impacts aquatic ecosystems and biodiversity. Air pollution from incineration causes the release of greenhouse gases creating global warming, noxious gases and particulate matter eliciting pulmonary disorders. The toxicity of waste engine oil is due to the total petroleum hydrocarbons (TPH) composition, including polycyclic aromatic hydrocarbons (PAHs), benzene, toluene, ethylbenzene, xylene (BTEX), polychlorinated biphenyls (PCBs) congeners, organometallic compounds, and toxic chemical additives. The paper aims to provide a comprehensive overview of the ecotoxicological effects, human and animal health toxicology and exposure to waste engine oils. It highlights the properties and functions of engine oil and describes waste engine oil generation, disposal and recycling. It provides intensive evaluations and descriptions of the toxicokinetics, metabolism, routes of exposure and toxicosis in human and animal studies based on toxicological, epidemiological and experimental studies. It emphasises the preventive measures in occupational exposure and recommends risk-based remediation techniques to mitigate environmental pollution. The review will assist in understanding the potential risks of waste engine oil with significant consideration of the public health benefits and importance.

Surfactant-Based Chemical Washing to Remediate Oil-Contaminated Soil: The State of Knowledge

As the energy demand increases, there is a significant expansion and utilization of oil resources, resulting in the inevitable occurrence of environmental pollution. Oil has been identified as a prevalent soil contaminant, posing substantial risks to the soil ecosystems. The remediation of soil contaminated with oil is a formidable undertaking. Increasing evidence shows that chemical washing, a remediation technique employing chemical reagents like surfactants to augment the solubilization, desorption, and separation of petroleum hydrocarbons in soil, proves to be an efficacious approach, but the latest advances on this topic have not been systematically reviewed. Here, we present the state of knowledge about the surfactant-based chemical washing to remediate oil-contaminated soil. Using the latest data, the present article systematically summarizes the advancements on ex situ chemical washing of oil pollution and provides a concise summary of the underlying principles. The use of various surfactants in chemical washing and the factors influencing remediation efficiency are highlighted. Based on the current research status and knowledge gaps, future perspectives are proposed to facilitate chemical washing of oil-polluted soil. This review can help recognize the application of chemical washing in the remediation of oil-polluted soil.

Review on biochar as a sustainable green resource for the rehabilitation of petroleum hydrocarbon-contaminated soil

Petroleum pollution is one of the primary threats to the environment and public health. Therefore, it is essential to create new strategies and enhance current ones. The process of biological reclamation, which utilizes a biological agent to eliminate harmful substances from polluted soil, has drawn much interest. Biochars are inexpensive, environmentally beneficial carbon compounds extensively employed to remove petroleum hydrocarbons from the environment. Biochar has demonstrated an excellent capability to remediate soil pollutants because of its abundant supply of the required raw materials, sustainability, affordability, high efficacy, substantial specific surface area, and desired physical-chemical surface characteristics. This paper reviews biochar's methods, effectiveness, and possible toxic effects on the natural environment, amended biochar, and their integration with other remediating materials towards sustainable remediation of petroleum-polluted soil environments. Efforts are being undertaken to enhance the effectiveness of biochar in the hydrocarbon-based rehabilitation approach by altering its characteristics. Additionally, the adsorption, biodegradability, chemical breakdown, and regenerative facets of biochar amendment and combined usage culminated in augmenting the remedial effectiveness. Lastly, several shortcomings of the prevailing methods and prospective directions were provided to overcome the constraints in tailored biochar studies for long-term performance stability and ecological sustainability towards restoring petroleum hydrocarbon adultered soil environments.

Managing antimony pollution: Insights into Soil-Plant system dynamics and remediation Strategies

Researchers are increasingly concerned about antimony (Sb) in ecosystems and the environment. Sb primarily enters the environment through anthropogenic (urbanization, industries, coal mining, cars, and biosolid wastes) and geological (natural and chemical weathering of parent material, leaching, and wet deposition) processes. Sb is a hazardous metal that can potentially harm human health. However, no comprehensive information is available on its sources, how it behaves in soil, and its bioaccumulation. Thus, this study reviews more than 160 peer-reviewed studies examining Sb's origins, geochemical distribution and speciation in soil, biogeochemical mechanisms regulating Sb mobilization, bioavailability, and plant phytotoxicity. In addition, Sb exposure effects plant physio-morphological and biochemical attributes were investigated. The toxicity of Sb has a pronounced impact on various aspects of plant life, including a reduction in seed germination and impeding plant growth and development, resulting from restricted essential nutrient uptake, oxidative damages, disruption of photosynthetic system, and amino acid and protein synthesis. Various widely employed methods for Sb remediation, such as organic manure and compost, coal fly ash, biochar, phytoremediation, microbial-based bioremediation, micronutrients, clay minerals, and nanoremediation, are reviewed with a critical assessment of their effectiveness, cost-efficiency, and suitability for use in agricultural soils. This review shows how plants deal with Sb stress, providing insights into lowering Sb levels in the environment and lessening risks to ecosystems and human health along the food chain. Examining different methods like bioaccumulation, bio-sorption, electrostatic attraction, and complexation actively works to reduce toxicity in contaminated agricultural soil caused by Sb. In the end, the exploration of recent advancements in genetics and molecular biology techniques are highlighted, which offers valuable insights into combating Sb toxicity. In conclusion, the findings of this comprehensive review should help develop innovative and useful strategies for minimizing Sb absorption and contamination and thus successfully managing Sb-polluted soil and plants to reduce environmental and public health risks.

Formulation and Optimization of Effective Oil Spill Dispersants Composed of Surface-Active Ionic Liquids and Nonionic Surfactants

The use of chemical dispersants to remove oil spills in aquatic environments raises serious concerns, including heightened toxicity and limited biodegradability, which diminish their effectiveness. This study aimed to develop an environmentally friendly formulation by combining two nonionic surfactants (Tween 80, Span 80) with two surface-active ionic liquids (SAILs): 1-butyl-3-methylimidazolium lauroyl sarcosinate [Bmim][Lausar] and choline myristate [Cho][Mys], to remediate crude oil spill. The performance of the formulation was evaluated by its emulsion stability, surface tension, interfacial tension (IFT), and effectiveness. The toxicity and biodegradability of the formulation were also assessed to ensure their safe application in aquatic environments. The formulation (F9) exhibited the most stable emulsion, maintaining stability even after 5 h with a critical micelle concentration (CMC) of 3.52 mM. The efficiency of the formulation in dispersing various crude oils (Arab, Ratawi, and Doba) ranged from 70.12 to 93.72%. Acute toxicity tests conducted on zebrafish demonstrated that the formulation, with an LC50 value of 450 mg L-1, exhibited practically nontoxicity after 96 h. The formulation showed rapid biodegradability, exceeding 60% within a 28-day testing period. This research presents a promising approach for synthesizing the green formulation which can contribute to mitigating the environmental impacts of oil spills and enhancing the efficiency of cleanup operations.

Environmental risk substances in soil on seed germination: Chemical species, inhibition performance, and mechanisms

Nowadays, numerous environmental risk substances in soil worldwide have exhibited serious germination inhibition of crop seeds, posing a threat to food supply and security. This review provides a comprehensive summary and discussion of the inhibitory effects of environmental risk substances on seed germination, encompassing heavy metals, microplastics, petroleum hydrocarbons, salinity, phenols, essential oil, agricultural waste, antibiotics, etc. The impacts of species, concentrations, and particle sizes of various environmental risk substances are critically investigated. Furthermore, three primary inhibition mechanisms of environmental risk substances are elucidated: hindering water absorption, inducing oxidative damage, and damaging seed cells/organelles/cell membranes. To address these negative impacts, diverse effective coping measures such as biochar/compost addition, biological remediation, seed priming, coating, and genetic modification are proposed. In brief, this study systematically analyzes the negative effects of environmental risk substances on seed germination, and provides a basis for the comprehensive understanding and future implementation of efficient treatments to address this significant challenge and ensure food security and human survival.

Unveiling the capacity of bioaugmentation application, in comparison with biochar and rhamnolipid for TPHs degradation in aged hydrocarbons polluted soil

Persistent, aged hydrocarbons in soil hinder remediation, posing a significant environmental threat. While bioremediation offers an environmentally friendly and cost-effective approach, its efficacy for complex contaminants relies on enhancing pollutant bioavailability. This study explores the potential of immobilized bacterial consortia combined with biochar and rhamnolipids to accelerate bioremediation of aged total petroleum hydrocarbon (TPH)-contaminated soil. Previous research indicates that biochar and biosurfactants can increase bioremediation rates, while mixed consortia offer sequential degradation and higher hydrocarbon mineralization. The present investigation aimed to assess whether combining these strategies could further enhance degradation in aged, complex soil matrices. The bioaugmentation (BA) with bacterial consortium increased the TPHs degradation in aged soil (over 20% compared to natural attenuation - NA). However, co-application of BA with biochar and rhamnolipid higher did not show a statistically prominent synergistic effect. While biochar application facilitated the maintenance of hydrocarbon degrading bacterial consortium in soil, the present study did not identify a direct influence in TPHs degradation. The biochar application in contaminated soil contributed to TPHs adsorption. Rhamnolipid alone slightly increased the TPHs biodegradation with NA, while the combined bioaugmentation treatment with rhamnolipid and biochar increased the degradation between 27.5 and 29.8%. These findings encourage further exploration of combining bioaugmentation with amendment, like biochar and rhamnolipid, for remediating diverse environmental matrices contaminated with complex and aged hydrocarbons.

UHPM dominance in driving the formation of petroleum-contaminated soil aggregate, the bacterial communities succession, and phytoremediation

This study focused on the effects of urea humate-based porous materials (UHPM) on soil aggregates, plant physiological characteristics, and microbial diversity to explore the effects of UHPM on the phytoremediation of petroleum-contaminated soil. The compositions of soil aggregates, ryegrass (Lolium perenne) biomass, plant petroleum enrichment capacity, and bacterial communities in soils with and without UHPM were investigated. The results showed that UHPM significantly increased soil aggregate content by 0.25 mm-5 mm, resulting in higher fertilizer holding capacity, erosion resistance capacity, and plant biomass and microbial number than the soil without UHPM mixed. In addition, UHPM decreased the absorption of petroleum by plants in the soil while increasing the abundance of degrading bacteria and petroleum-degrading-related genes in the soil, thereby promoting the removal of hard-to-degrade petroleum components. RDA showed that, compared with the unimproved soil, each soil indicator was positively correlated with a high abundance of degrading bacteria in the improved soil and was significant. UHPM can be regarded as a petroleum-contaminated soil remediation agent that combines slow nutrient release with soil improvement effects.

Fabrication of engineered biochar for remediation of toxic contaminants in soil matrices and soil valorization

Biochar has emerged as an efficacious green material for remediation of a wide spectrum of environmental pollutants. Biochar has excellent characteristics and can be used to reduce the bioavailability and leachability of emerging pollutants in soil through adsorption and other physico-chemical reactions. This paper systematically reviewed previous researches on application of biochar/engineered biochar for removal of soil contaminants, and underlying adsorption mechanism. Engineered biochar are derivatives of pristine biochar that are modified by various physico-chemical and biological procedures to improve their adsorption capacities for contaminants. This review will promote the possibility to expand the application of biochar for restoration of degraded lands in the industrial area or saline soil, and further increase the useable area. This review shows that application of biochar is a win-win strategy for recycling and utilization of waste biomass and environmental remediation. Application of biochar for remediation of contaminated soils may provide a new solution to the problem of soil pollution. However, these studies were performed mainly in a laboratory or a small scale, hence, further investigations are required to fill the research gaps and to check real-time applicability of engineered biochar on the industrial contaminated sites for its large-scale application.

Biospectroscopic fingerprinting phytotoxicity towards environmental monitoring for food security and contaminated site remediation

Human activities have resulted in severe environmental pollution since the industrial revolution. Phytotoxicity-based environmental monitoring is well known due to its sedentary nature, abundance, and sensitivity to environmental changes, which are essential preconditions to avoiding potential environmental and ecological risks. However, conventional morphological and physiological methods for phytotoxicity assessment mainly focus on descriptive determination rather than mechanism analysis and face challenges of labour and time-consumption, lack of standardized protocol and difficulties in data interpretation. Molecular-based tests could reveal the toxicity mechanisms but fail in real-time and in-situ monitoring because of their endpoint manner and destructive operation in collecting cellular components. Herein, we systematically propose and lay out a biospectroscopic tool (e.g., infrared and Raman spectroscopy) coupled with multivariate data analysis as a relatively non-destructive and high-throughput approach to quantitatively measure phytotoxicity levels and qualitatively profile phytotoxicity mechanisms by classifying spectral fingerprints of biomolecules in plant tissues in response to environmental stresses. With established databases and multivariate analysis, this biospectroscopic fingerprinting approach allows ultrafast, in situ and on-site diagnosis of phytotoxicity. Overall, the proposed protocol and validation of biospectroscopic fingerprinting phytotoxicity can distinguish the representative biomarkers and interrogate the relevant mechanisms to quantify the stresses of interest, e.g., environmental pollutants. This state-of-the-art concept and design broaden the knowledge of phytotoxicity assessment, advance novel implementations of phytotoxicity assay, and offer vast potential for long-term field phytotoxicity monitoring trials in situ.

Molecular and metabolic characterization of petroleum hydrocarbons degrading Bacillus cereus

Hydrocarbon constituents of petroleum are persistent, bioaccumulated, and bio-magnified in living tissues, transported to longer distances, and exert hazardous effects on human health and the ecosystem. Bioaugmentation with microorganisms like bacteria is an emerging approach that can mitigate the toxins from environmental sources. The present study was initiated to target the petroleum-contaminated soil of gasoline stations situated in Lahore. Petroleum degrading bacteria were isolated by serial dilution method followed by growth analysis, biochemical and molecular characterization, removal efficiency estimation, metabolites extraction, and GC-MS of the metabolites. Molecular analysis identified the bacterium as Bacillus cereus, which exhibited maximum growth at 72 hours and removed 75% petroleum. Biochemical characterization via the Remel RapID™ ONE panel system showed positive results for arginine dehydrolase (ADH), ornithine decarboxylase (ODC), lysine decarboxylase (LDC), o-nitrophenyl-β-D-galactosidase (ONPG), p-nitrophenyl-β-D-glucosidase (βGLU), p-nitrophenyl-N-acetyl-β-D-glucosaminidase (NAG), malonate (MAL), adonitol fermentation (ADON), and tryptophane utilization (IND). GC-MS-based metabolic profiling identified alcohols (methyl alcohol, o-, p- and m-cresols, catechol, and 3-methyl catechol), aldehydes (methanone, acetaldehyde, and m-tolualdehyde), carboxylic acid (methanoic acid, cis,cis-muconic acid, cyclohexane carboxylic acid and benzoic acid), conjugate bases of carboxylic acids (benzoate, cis,cis-muconate, 4-hydroxybenzoate, and pyruvate) and cycloalkane (cyclohexene). It suggested the presence of methane, methylcyclohexane, toluene, xylene, and benzene degradation pathways in B. cereus.

Simultaneous remediation of diesel-polluted soil and promoted ryegrass growth by non-thermal plasma pretreatment

The remediation of petroleum-polluted soil has garnered significant global attention. In this study, a pot-culture experiment was conducted to assess the feasibility of using non-thermal plasma (NTP) as an efficient and economic-friendly pretreatment method in the phytoremediation of diesel-polluted soil. The remediation effectiveness was evaluated via both the removal of diesel and the ryegrass growth. Specifically, at the 50th d of ryegrass growth, the increase of diesel removal efficiency with NTP pretreatment ranged from 16 % to 30 %. Moreover, both clean and diesel-polluted soils pretreated by NTP promoted the growth of ryegrass in shoot lengths and biomass especially after the 35th d. It was found that nitrate nitrogen fixed by NTP not only stimulated the nitrate reductase activities in leaves and promoted plant growth, but also was transformed to more ammonia nitrogen for organism life activity. Subsequent investigation proved that the related nitrogen-metabolism activities of microbes were enriched in rhizosphere soils with NTP pretreatment. Furthermore, NTP treatment increased the abundance of beneficial microbial communities in diesel soil rhizosphere on the 42nd d of growth period. In addition, changes in the proportions of soil dissolved organic matter indicated enhanced nutrient cycling in soils with NTP pretreatment. These promotional effects underscored the contribution of NTP pretreatment in rapidly detoxifying diesel-contaminated soil within 10 min and accelerated the establishment of ryegrass ecosystem. This study provides valuable insights into the role of nitrogen fixation and offers an efficient and promising advanced approach for the phytoremediation of diesel-polluted soil with NTP pretreatment.

Bioremediation of hydrocarbon by co-culturing of biosurfactant-producing bacteria in microbial fuel cell with Fe2O3-modified anode

The most common type of environmental contamination is petroleum hydrocarbons. Sustainable and environmentally friendly treatment strategies must be explored in light of the increasing challenges of toxic and critical wastewater contamination. This paper deals with the bacteria-producing biosurfactant and their employment in the bioremediation of hydrocarbon-containing waste through a microbial fuel cell (MFC) with Pseudomonas aeruginosa (exoelectrogen) as co-culture for simultaneous power generation. Staphylococcus aureus is isolated from hydrocarbon-contaminated soil and is effective in hydrocarbon degradation by utilizing hydrocarbon (engine oil) as the only carbon source. The biosurfactant was purified using silica-gel column chromatography and characterised through FTIR and GCMS, which showed its glycolipid nature. The isolated strains are later employed in the MFCs for the degradation of the hydrocarbon and power production simultaneously which has shown a power density of 6.4 W/m3 with a 93% engine oil degradation rate. A biogenic Fe2O3 nanoparticle (NP) was synthesized using Bambusa arundinacea shoot extract for anode modification. It increased the power output by 37% and gave the power density of 10.2 W/m3. Thus, simultaneous hydrocarbon bioremediation from oil-contamination and energy recovery can be achieved effectively in MFC with modified anode.

Phytotoxicity of radionuclides: A review of sources, impacts and remediation strategies

Various anthropogenic activities and natural sources contribute to the presence of radioactive materials in the environment, posing a serious threat to phytotoxicity. Contamination of soil and water by radioactive isotopes degrades the environmental quality and biodiversity. They persist in soils for a considerable amount of time and disturb the fauna and flora of any affected area. Hence, their removal from the contaminated medium is inevitable to prevent their entry into the food chain and the organisms at higher levels of the food chain. Physicochemical methods for radioactive element remediation are effective; however, they are not eco-friendly, can be expensive and impractical for large-scale remediation. Contrastingly, different bioremediation approaches, such as phytoremediation using appropriate plant species for removing the radionuclides from the polluted sites, and microbe-based remediation, represent promising alternatives for cleanup. In this review, sources of radionuclides in soil as well as their hazardous impacts on plants are discussed. Moreover, various conventional physicochemical approaches used for remediation discussed in detail. Similarly, the effectiveness and superiority of various bioremediation approaches, such as phytoremediation and microbe-based remediation, over traditional approaches have been explained in detail. In the end, future perspectives related to enhancing the efficiency of the phytoremediation process have been elaborated.

Migration of polycyclic aromatic hydrocarbons in the rhizosphere micro-interface of soil-ryegrass (Lolium perenne L.) system

The unclear multi-media and multi-interface processes of polycyclic aromatic hydrocarbons (PAHs) in environments have drawn great concern. Here, 16 controlled PAHs were selected to reveal the differences in the bioavailability and migration of congeners in soil-ryegrass exposure system. The presence of ryegrass in the exposure groups (with newly introduced PAHs) resulted in a decrease in PAHs dissipation (31.3 %) from soil compared to the unplanted groups (43.2 %). The presence of ryegrass inhibited the soil-air exchange process, which has not been widely reported. PAH congeners with less benzene rings (molecular weight < B[a]A) had consistent bioavailability before and after long-term aging, the competition between adsorption/absorption to plants and soil was not strong (RCFs < 3.5), and their migration in the rhizosphere rapidly reached equilibrium. PAH congeners with more benzene rings (molecular weight ≥ B[a]A) adsorbed to soil particles and significantly decreased their bioavailability after long-term aging. Their concentrations in the rhizosphere were stable and lower than bulk soil, revealing their slow equilibrium process in soil. In addition, PAHs with larger molecular weight and KOW showed less migration at the rhizosphere micro-interface. The migration behavior of congeners with close KOW depended on their molecular structure. Congeners with non-symmetric K-region or L-region showed greater migration ability in the rhizosphere. These findings revealed the fate of PAHs, especially different PAH congeners, in the rhizosphere interfaces for the first time, and explored the molecular mechanisms that affect their rhizosphere behaviors, improving the understanding and knowledge of PAHs in the microenvironment, providing new data on evaluating and controlling the environmental risks of PAHs.

Miscanthus x giganteus stress tolerance and phytoremediation capacities in highly diesel contaminated soils

Second generation biofuel crop Miscanthus x giganteus (Mxg) was studied as a candidate for petroleum hydrocarbons (PHs) contaminated soil phytomanagement. The soil was polluted by diesel in wide concentration gradient up to 50 g⋅kg-1 in an ex-situ pot experiment. The contaminated soil/plant interactions were investigated using plant biometric and physiological parameters, soil physico-chemical and microbial community's characteristics. The plant parameters and chlorophyll fluorescence indicators showed an inhibitory effect of diesel contamination; however much lower than expected from previously published results. Moreover, lower PHs concentrations (5 and 10 g⋅kg-1) resulted in positive reinforcement of electron transport as a result of hormesis effect. The soil pH did not change significantly during the vegetation season. The decrease of total organic carbon was significantly lower in planted pots. Soil respiration and dehydrogenases activity increased with the increasing contamination indicating ongoing PHs biodegradation. In addition, microbial biomass estimated by phospholipid fatty acids increased only at higher PHs concentrations. Higher dehydrogenases values were obtained in planted pots compared to unplanted. PHs degradation followed the first-order kinetics and for the middle range of contamination (10-40 g⋅kg-1) significantly lower PHs half-lives were determined in planted than unplanted soil pointing on phytoremediation. Diesel degradation was in range 35-70 % according to pot variant. Results confirmed the potential of Mxg for diesel contaminated soils phytomanagement mainly in PHs concentrations up to 20 g⋅kg-1 where phytoremediation was proved, and biomass yield was reduced only by 29 %.

Responses of salicylic acid encapsulation on growth, photosynthetic attributes and ROS scavenging system in Lactuca sativa exposed to polycyclic aromatic hydrocarbon pollution

Salicylic acid (SA) is a phytohormone that plays a key role in the regulation of the defense response against environmental variables in plants, and it provides increased yield and stress tolerance when exogenously applied to plants as a growth regulator. The role of SA-mediated signals in abiotic stress tolerance varies according to the species, stressor, application method, and dose. This study investigated the effects of salicylic acid (SA, 0.1 mg ml-1) or β-cyclodextrin encapsulated salicylic acid (e-SA, 0.1 mg ml-1) treatments on growth parameters, gas exchange, photosynthesis efficiency, and antioxidant capacity in lettuce seedlings exposed to polycyclic aromatic hydrocarbon pollution. Fluorene (FLN, 100 mg L-1) contamination resulted in a 27% growth rate and a 14% water content reduction in lettuce leaves. Significant suppressions of stomatal conductance, carbon assimilation, and PSII photochemistry were detected in plants under stress. FLN + SA and FLN + e-SA treatments regulated plant-water relations by stimulating proline accumulation and relieving stomatal limitations. As indicated by the high Fv/Fm ratio, photosynthesis efficiency was recovered in FLN + SA and FLN + e-SA group plants. FLN stress caused high oxidative stress in lettuce leaves and increased lipid peroxidation level by 40%. However, especially e-SA application to plants under stress, increased SOD activity by 3-fold and CAT activity by 80% and was successful in preventing H2O2 accumulation and lipid peroxidation. Both SA and e-SA treatments partially activated the AsA-GSH cycle. As a result, direct SA application was effective in mitigating stress-induced physiological limitations with high SA accumulation in the tissues, while encapsulated SA treatment was more effective in regulating photosynthetic and biochemical reactions, alleviating oxidative damage by activating the antioxidant defense, and promoting growth under stress with moderate SA accumulation.

Exploring the bioremediation capability of petroleum-contaminated soils for enhanced environmental sustainability and minimization of ecotoxicological concerns

The bioremediation of soils contaminated with petroleum hydrocarbons (PHCs) has emerged as a promising approach, with its effectiveness contingent upon various types of PHCs, i.e., crude oil, diesel, gasoline, and other petroleum products. Strategies like genetically modified microorganisms, nanotechnology, and bioaugmentation hold potential for enhancing remediation of polycyclic aromatic hydrocarbon (PAH) contamination. The effectiveness of bioremediation relies on factors such as metabolite toxicity, microbial competition, and environmental conditions. Aerobic degradation involves enzymatic oxidative reactions, while bacterial anaerobic degradation employs reductive reactions with alternative electron acceptors. Algae employ monooxygenase and dioxygenase enzymes, breaking down PAHs through biodegradation and bioaccumulation, yielding hydroxylated and dihydroxylated intermediates. Fungi contribute via mycoremediation, using co-metabolism and monooxygenase enzymes to produce CO2 and oxidized products. Ligninolytic fungi transform PAHs into water-soluble compounds, while non-ligninolytic fungi oxidize PAHs into arene oxides and phenols. Certain fungi produce biosurfactants enhancing degradation of less soluble, high molecular-weight PAHs. Successful bioremediation offers sustainable solutions to mitigate petroleum spills and environmental impacts. Monitoring and assessing strategy effectiveness are vital for optimizing biodegradation in petroleum-contaminated soils. This review presents insights and challenges in bioremediation, focusing on arable land safety and ecotoxicological concerns.

Applicability of Compost and Mineral Materials for Reducing the Effect of Diesel Oil on Trace Element Content in Soil

Petroleum-derived substances have become the factor adversely affecting the soil quality and, also, crop production. However, the ability to immobilise contaminants is limited in anthropogenically altered soils. Therefore, a study was undertaken to evaluate the effects of soil contamination with diesel oil (0, 2.5, 5 and 10 cm³ kg^-1) on the contents of trace elements in the soil and determine the suitability of different neutralising materials (compost, bentonite and calcium oxide) for the in situ stabilisation of soil contaminated with this petroleum derivative. In the soil contaminated with the highest dose of diesel oil (10 cm³ kg^-1), a decrease in chromium, zinc and cobalt and an increase in the total nickel, iron and cadmium concentrations were found in the series without the addition of neutralising materials. Remediation with compost and mineral materials contributed to a significant reduction of nickel and iron, as well as cobalt, in soil (calcium oxide only). All materials used contributed to an increase in cadmium, chromium, manganese and copper in the soil. The above-mentioned materials (most notably calcium oxide) can be successfully used to reduce the effect of diesel oil on the contents of some trace elements in soil.

Thermal plasma potential to remediate soil contaminated with diesel

Petroleum hydrocarbons (PHCs) are recognized as one of the major soil contaminants causing negative environmental impact. Thereby, PHCs remediation from the soil is essential. Hence, this experimental study aimed to assess the potential of thermal water vapor and air plasmas to remediate soil contaminated with habitually used PHCs - diesel. The impact of contaminant content in the soil on the remediation process also was estimated. The results of this research demonstrated that 99.9% contaminant removal efficiency was received proceeding diesel contaminated soil remediation in the environment of the thermal plasma in defiance of whether water vapor or air was employed as a plasma-forming gas. Moreover, the soil's contaminant content (80-160 g/kg) did not influence its' removal efficiency. The soil de-pollution process also caused the decomposition of the soils' natural carbon reserves since carbon content decreased from an initial 9.8 wt% in the clean soil to 3-6 wt% in the remediated soil. Furthermore, PHCs - diesel was decomposed into producer gas mainly consisting of H₂, CO (also known as synthesis gas) and CO₂. Thus, the thermal plasma offers a way not only to de-pollute the soil but also to reuse the PHCs present in the soil by breaking it down into gaseous products that can further be used to meet human needs.

Enzymatic Assessment of the State of Oil-Contaminated Soils in the South of Russia after Bioremediation

Soil pollution with oil as a result of accidents at oil pipelines and oil refineries is a frequent occurrence in the south of Russia. To restore such polluted lands, it is necessary to carry out soil remediation measures. This work aimed to evaluate the use of ameliorants of various natures (biochar, sodium humate, and microbial preparation Baikal EM-1) to restore the ecological state of oil-contaminated soils with different properties (Haplic Chernozem, Haplic Arenosols, Haplic Cambisols). To assess the ecological state of soils, the following physicochemical and biological indicators were studied: residual oil content, redox potential, and medium reaction (pH). Changes in enzymatic activity were also studied, including catalase, dehydrogenases, invertase, urease, and phosphatase. The greatest decomposition of oil in Haplic Chernozem and Haplic Cambisols was provided by Baikal EM-1 (56 and 26%), and in Haplic Arenosols, this was provided by biochar (94%) and sodium humate (93%). In oil-contaminated Haplic Cambisols, the content of easily soluble salts with the addition of biochar and Baikal EM-1 increased by 83 and 58%, respectively. The introduction of biochar caused an increase in pH from 5.3 (Haplic Cambisols) to 8.2 (Haplic Arenosols). The introduction of oil-contaminated Haplic Arenosols of biochar, humate, and Baikal stimulated the activity of catalase and dehydrogenases by 52-245%. The activity of invertase was stimulated in the Haplic Chernozem after the introduction of ameliorants by 15-50%. The activity of urease was stimulated after the introduction of ameliorants into borax and Arenosol by 15-250%. The most effective ameliorant for restoring the ecological state of Haplic Cambisols after oil pollution was biochar. For Haplic Arenosols, this was sodium humate, and for Haplic Chernozem, the effectiveness of biochar and sodium humate did not differ. The most informative indicator for the remediation of Haplic Chernozem and Haplic Cambisols was the activity of dehydrogenases, and for Haplic Arenosols, this was the activity of phosphatase. The results of the study should be used to biomonitor the ecological state of oil-contaminated soils after bioremediation.

Efficacious use of potential biosurfactant producing plant growth promoting rhizobacteria to combat petrol toxicity in Zea mays L. plants

Soil pollution caused by petroleum hydrocarbons is a serious threat for human life, as it affects the groundwater, cause economical losses after decreasing the agricultural production, and create other ecological issues. Here, we are reporting the isolation and screening of rhizosphere bacteria possessing biosurfactant producing potential and capable of enhancing plant growth under petrol stress as well as possessing. Efficient biosurfactant producers having plant growth promoting traits were characterized morphologically, physiologically, and phylogenetically. These selected isolates were identified as Bacillus albus S2i, Paraclostridium benzoelyticum Pb4, and Proteus mirabilis Th1 based on 16S rRNA sequence analysis. These bacteria possessed plant growth promoting attributes as well as exhibited positive activity toward the assays based on hydrophobicity, lipase activity, surface activity, and hydrocarbon degradation that indicated the production of biosurfactants. Fourier transform infrared spectroscopy of crude biosurfactants extracted from bacterial strains revealed that the biosurfactants from Pb4 and Th1 might belong to glycolipid or glycolipopeptide class whereas the biosurfactants from S2i could be from phospholipid class. Scanning electron micrographs exhibited group of exopolymer matrices interconnecting the cells forming a complex network of mass, while energy dispersive X-ray analysis has shown elemental composition of biosurfactants with dominance of nitrogen, carbon, oxygen, and phosphorous. Further, these strains were then used to ascertain their effect on the growth and biochemical parameters including stress metabolites and antioxidant enzymology of Zea mays L. plants grown under petrol (gasoline) stress. Significant increments in all studied parameters were observed in comparison with control treatments that might be due to petrol degradation by bacteria and also by secreting growth stimulating substances released by these bacteria in soil ecosystem. To the best of our knowledge, this is the first report in which Pb4 and Th1 were studied as surfactant producing PGPR and further their role as biofertilizer for the significant improvement in phytochemical constituents of maize plants grown under petrol stress was assessed.

Total petroleum hydrocarbons and influencing factors in co-composting of rural sewage sludge and organic solid wastes

Co-composting is an efficient strategy for collaborative disposal of multiple organic wastes in rural areas. In this study, we explored the co-composting of rural sewage sludge and other organic solid wastes (corn stalks and kitchen waste), with a focus on the variation of total petroleum hydrocarbons (TPH) during this process. 12% corn-derived biochar was applied in the composting (BC), with no additives applied as the control treatment (CK). The TPH contents of piles after composting ranged from 0.70 to 0.74 mg/g, with overall removal efficiencies of 35.6% and 61.1% for CK and BC, respectively. The results indicate that the addition of 12% biochar increased the rate of TPH degradation and accelerated the degradation process. 16s rDNA high-throughput sequencing was applied to investigate the biodiversity and bacterial community succession during the composting process. Diverse bacterial communities with TPH degradation functions were observed in the composting process, including Acinetobacter, Flavobacterium, Paenibacillus, Pseudomonas, and Bacillus spp. These functional bacteria synergistically degraded TPH, with cooperative behavior dominating during composting. Biochar amendment enhanced the microbial activity and effectively promoted the biodegradation of TPH. The physicochemical properties of the compost piles, including environmental factors (pH and temperature), nutrients (nitrogen, phosphorus, potassium), and humic substances produced in composting (humic acids and fulvic acids), directly and indirectly affected the variation in TPH contents. In conclusion, this work illustrates the variation in TPH content and associated influencing factors during co-composting of rural organic solid wastes, providing valuable guidance toward the further optimization of rural organic waste management.

Editorial on the Topic "New Research on Detection and Removal of Emerging Pollutants"

With the Topic "New Research on Detection and Removal of Emerging Pollutants" (https://www [...].

Biochar application for remediation of organic toxic pollutants in contaminated soils; An update

Bioremediation of organic contaminants has become a major environmental concern in the last few years, due to its bio-resistance and potential to accumulate in the environment. The use of diverse technologies, involving chemical and physical principles, and passive uptake utilizing sorption using ecofriendly substrates have drawn a lot of interest. Biochar has got attention mainly due to its simplicity of manufacturing, treatment, and disposal, as it is a less expensive and more efficient material, and has a lot of potential for the remediation of organic contaminants. This review highlighted the adverse impact of persistent organic pollutants on the environment and soil biota. The utilization of biochar to remediate soil and contaminated compounds i.e., pesticides, polycyclic aromatic hydrocarbons, antibiotics, and organic dyes has also been discussed. The soil application of biochar has a significant impact on the biodegradation, leaching, and sorption/desorption of organic contaminants. The sorption/desorption of organic contaminants is influenced by chemical composition and structure, porosity, surface area, pH, and elemental ratios, and surface functional groups of biochar. All the above biochar characteristics depend on the type of feedstock and pyrolysis conditions. However, the concentration and nature of organic pollutants significantly alters the sorption capability of biochar. Therefore, the physicochemical properties of biochar and soils/wastewater, and the nature of organic contaminants, should be evaluated before biochar application to soil and wastewater. Future initiatives, however, are needed to develop biochars with better adsorption capacity, and long-term sustainability for use in the xenobiotic/organic contaminant remediation strategy.

In situ bioremediation of petroleum hydrocarbon–contaminated soil: isolation and application of a Rhodococcus strain

Due to low consumption and high efficiency, in situ microbial remediation of petroleum hydrocarbons (PHs)-contaminated sites in in-service petrochemical enterprises has attracted more and more attention. In this study, a degrading strain was isolated from oil depot-contaminated soil with soil extract (PHs) as the sole carbon source, identified and named Rhodococcus sp. OBD-3. Strain OBD-3 exhibited wide adaptability and degradability over a wide range of temperatures (15-37 °C), pH (6.0-9.0), and salinities (1-7% NaCl) to degrade 60.6-86.6% of PHs. Under extreme conditions (15 °C and 3-7% salinity), PHs were degraded by 60.6 ± 8.2% and more than 82.1% respectively. In OBD-3, the alkane monooxygenase genes alkB1 and alkB2 (GenBank accession numbers: MZ688386 and MZ688387) were found, which belonged to Rhodococcus by sequence alignment. Moreover, strain OBD-3 was used in lab scale remediation in which the contaminated soil with OBD-3 was isolated as the remediation object. The PHs were removed at 2,809 ± 597 mg/kg within 2 months, and the relative abundances of Sphingobium and Pseudomonas in soil increased more than fivefold. This study not only established a system for the isolation and identification of indigenous degrading strains that could efficiently degrade pollutants in the isolated environment but also enabled the isolated degrading strains to have potential application prospects in the in situ bioremediation of PHs-contaminated soils.

Utilization of surface-active compounds derived from biosolids to remediate polycyclic aromatic hydrocarbons contaminated sediment soil

In the present study, surface-active compounds (SAC) were extracted from biosolids using an alkaline treatment process. They were tested for their remediation efficiency of crude oil-contaminated sediment soil and was compared with Triton x-100. The SAC exhibited a similar soil washing efficiency to that of the commercial Triton x-100, and under the optimized soil washing parameters, SAC exhibited a maximum of 91% total polycyclic aromatic hydrocarbons removal. Further, on analysing the toxicity of the soil residue after washing, it was observed that SAC from biosolids washed soil exhibited an average of 1.5-fold lesser toxicity compared to that of Triton x-100 on different test models-earthworm, a monocot, and dicot plants. The analysis of the key soil parameters revealed that the commercial surfactant reduced the soil organic matter and porosity by an average of 1.3-fold compared to SAC. Further, the ability of surfactants to induce toxicity was confirmed by the adsorption of the surfactants on the surface of the soil particles which was in the order of Triton x-100 > SAC. Thus, this study suggests that SAC can be applied as an effective bioremediation approach for contaminated soil for a greener and sustainable ecosystem.

Polystyrene nanoplastic contamination mixed with polycyclic aromatic hydrocarbons: Alleviation on gas exchange, water management, chlorophyll fluorescence and antioxidant capacity in wheat

Polycyclic aromatic hydrocarbons (PAHs) constitute a significant environmental pollution group that reaches toxic levels with anthropogenic activities. The adverse effects of nanoplastics accumulating in ecosystems with the degradation of plastic wastes are also a growing concern. Previous studies have generally focused on the impact of single PAH or plastic fragments exposure on plants. However, it is well recognized that these contaminants co-exist at varying rates in agricultural soil and water resources. Therefore, it is critical to elucidate the phytotoxicity and interaction mechanisms of mixed pollutants. The current study was designed to comparatively investigate the single and combined effects of anthracene (ANT, 100 mg L^-1), fluorene (FLU, 100 mg L^-1) and polystyrene nanoplastics (PS, 100 mg L^-1) contaminations in wheat. Plants exposed to single ANT, FLU and PS treatments demonstrated decline in growth, water content, high stomatal limitations and oxidative damage. The effect of ANT + FLU on these parameters was more detrimental. In addition, ANT and/or FLU treatments significantly suppressed photosynthetic capacity as determined by carbon assimilation rate (A) and chlorophyll a fluorescence transient. The antioxidant system was not fully activated (decreased superoxide dismutase, peroxidase and glutathione reductase) under ANT + FLU, then hydrogen peroxide (H₂O₂) content (by 2.7-fold) and thiobarbituric acid reactive substances (TBARS) (by 2.8-fold) increased. Interestingly, ANT + PS and FLU + PS improved the growth, water relations and gas exchange parameters. The presence of nanoplastics recovered the adverse effects of ANT and FLU on growth by protecting the photosynthetic photochemistry and reducing oxidative stress. PAH plus PS reduced the ANT and FLU accumulation in wheat leaves. In parallel, the increased antioxidant system, regeneration of ascorbate, glutathione and glutathione redox status observed under ANT + PS and FLU + PS. These findings will provide an information about the phytotoxicity mechanisms of mixed pollutants in the environment.

Phytotoxicity complements chemical assessment for re-use and re-purposing of refinery wastes for soil amendment purposes after bioremediation

The objective of this study was to assess the suitability of onsite re-use of mature compost for landscaping and tree mulching, produced from the bioremediation of oily sludge from the refinery. Compost samples from the co-composting process were analysed for a range of contaminants, including a human health risk assessment fractionation (HRAF) of the remaining petroleum hydrocarbons, as well as a phytotoxicity test. The chemical characterisation demonstrated that the process removed more than 94% of the original petroleum hydrocarbons from the sludge, and the removal rates were high at 1155 mg/kg/day. The HRAF demonstrated no residual risks, posed by the petroleum hydrocarbons present in the compost to human health if used on-site when compared to the relevant Australian environmental investigation levels (ILs). However, the phytotoxicity assessment demonstrated that the compost was toxic to germinating lettuce. The gap in the literature this study addressed was to provide an estimate of the LD₅₀ and no effect concentration (NEC) for the compost using a standard plant bioassay containing a range of residual (aged) and bioremediated refinery process wastes, including petroleum hydrocarbons. The values estimated for LD₅₀ and NEC were approximately 125 and 43 mg/kg, respectively for compost containing residual petroleum hydrocarbon fractions, filling a gap in the current literature which has limited data on standard toxicity values that can be used in determining and informing commercial remediation strategies and their outcomes with aged sludges. Phytotoxicity was shown to be an important complement to conventional analyses and HRAF data when characterising the sludge, and understanding its potential for re-use. The novelty of the study is that it highlighted a gap in the complementary use of chemical and bioassay analyses for evaluating refinery waste remediation endpoints, which has potential for broader application to other projects.

Effects of Contaminated Soil on the Survival and Growth Performance of European (Populus tremula L.) and Hybrid Aspen (Populus tremula L. × Populus tremuloides Michx.) Clones Based on Stand Density

This study was conducted to assess the survival rates, growth, and chlorophyll fluorescence (Fv/Fm) of four hybrid aspen (14, 191, 27, 291) and two European aspen (R3 and R4) clones cultivated in creosote- and diesel oil-contaminated soil treatments under three different plant densities: one plant per pot (low density), two plants per pot (medium density), and six plants per pot (high density) over a period of two years and three months. Evaluating the survival, growth, and Fv/Fm values of different plants is a prerequisite for phytoremediation to remediate polluted soils for ecological restoration and soil health. The results revealed that contaminated soils affected all plants’ survival rates and growth. However, plants grown in the creosote-contaminated soil displayed a 99% survival rate, whereas plants cultivated in the diesel-contaminated soil showed a 22−59% survival rate. Low plant density resulted in a higher survival rate and growth than in the other two density treatments. In contrast, the medium- and high-density treatments did not affect the plant survival rate and growth to a greater extent, particularly in contaminated soil treatments. The effects of clonal variation on the survival rate, growth, and Fv/Fm values were evident in all treatments. The results suggested that hybrid aspen clones 14 and 291, and European aspen clone R3 were suitable candidates for the phytoremediation experiment, as they demonstrated reasonable survival rates, growth, and Fv/Fm values across all treatments. A superior survival rate for clone 291, height and diameter growth, and stem dry biomass production for clone 14 were observed in all soil treatments. Overall, a reasonable survival rate (~75%) and Fv/Fm value (>0.75) for all plants in all treatments, indicating European aspen and hybrid aspen have considerable potential for phytoremediation experiments. As the experiment was set up for a limited period, this study deserves further research to verify the growth potential of different hybrid aspen and European aspen clones in different soil and density treatment for the effective phytoremediation process to remediate the contaminated soil.

Trace Element Contents in Petrol-Contaminated Soil Following the Application of Compost and Mineral Materials

The global use of petroleum hydrocarbons as raw materials and an energy source in industry results in serious environmental, health, and ecological problems. Consequently, there is growing interest in the development of technologies for the rehabilitation of contaminated areas. This study was undertaken in order to determine the effect of different phytostabilising materials (compost, bentonite, and CaO) on the trace element content in soil contaminated with unleaded petroleum 95 (0, 2.5, 5, and 10 cm³ kg⁻¹ of soil). The doses of petroleum applied to the soil were based on the previously conducted preliminary experiment. The highest petroleum dose (10 cm³ kg⁻¹ of soil) significantly reduced the chromium, zinc, and cobalt contents in the soil. Petroleum increased the cadmium, lead, nickel, and copper contents in the soil. The materials used for phytostabilisation (compost, bentonite, calcium oxide) had a significant effect on the trace element content in the soil. The application of mineral materials (bentonite and calcium oxide) was more effective than the application of compost, compared to the control series (without soil amendments) as they reduced the contents of cadmium, chromium, nickel, and cobalt in the soil to the greatest extent. The reduction effect of bentonite and calcium oxide on the content of these trace elements in the soil was stronger than compost.

Pseudomonas in environmental bioremediation of hydrocarbons and phenolic compounds- key catabolic degradation enzymes and new analytical platforms for comprehensive investigation

Pollution of the environment with petroleum hydrocarbons and phenolic compounds is one of the biggest problems in the age of industrialization and high technology. Species of the genus Pseudomonas, present in almost all hydrocarbon-contaminated areas, play a particular role in biodegradation of these xenobiotics, as the genus has the potential to decompose various hydrocarbons and phenolic compounds, using them as its only source of carbon. Plasticity of carbon metabolism is one of the adaptive strategies used by Pseudomonas to survive exposure to toxic organic compounds, so a good knowledge of its mechanisms of degradation enables the development of new strategies for the treatment of pollutants in the environment. The capacity of microorganisms to metabolize aromatic compounds has contributed to the evolutionally conserved oxygenases. Regardless of the differences in structure and complexity between mono- and polycyclic aromatic hydrocarbons, all these compounds are thermodynamically stable and chemically inert, so for their decomposition, ring activation by oxygenases is crucial. Genus Pseudomonas uses several upper and lower metabolic pathways to transform and degrade hydrocarbons, phenolic compounds, and petroleum hydrocarbons. Data obtained from newly developed omics analytical platforms have enormous potential not only to facilitate our understanding of processes at the molecular level but also enable us to instigate and monitor complex biodegradations by Pseudomonas. Biotechnological application of aromatic metabolic pathways in Pseudomonas to bioremediation of environments polluted with crude oil, biovalorization of lignin for production of bioplastics, biofuel, and bio-based chemicals, as well as Pseudomonas-assisted phytoremediation are also considered.

A simple empirical model for phenanthrene adsorption on soil clay minerals

Soil clay minerals are effective substrate adsorbents of polycyclic aromatic hydrocarbons (PAHs) in natural soil. The adsorbed PAHs result in long-term contamination of soils. In this paper, a typical PAH phenanthrene (Phe) and nine high purity clay minerals are selected as representative PAH pollutants and adsorbents, respectively. A series of experiments have been conducted to disclose the relationship between the Phe adsorption effect of these clay minerals and their physical properties, including specific surface area (SSA), cation exchange capacity (CEC) and contact angle (CA). Molecular simulation methods are performed to explore the mechanism of clay mineral structure on Phe adsorption at the molecular level. Density functional theory (DFT) calculation suggests that the adsorption of Phe on clay minerals is mainly due to the van der Waals effect. The strength of the O-H-π effect is greater than that of the hydrophobic effect of Phe adsorption. Molecular dynamic (MD) simulations imply that the hydration effect of cations hinders the Phe hydrophobic adsorption by occupying the adsorption sites. Based on the mechanism explored, a simple empirical model is proposed, and the adsorption distribution coefficient K_d of clay mineral and water phases can be precisely predicted by the three physical properties of clay minerals, without rigorous quantitative analysis of soil clay minerals.

Remediation of soil polluted with petroleum hydrocarbons and its reuse for agriculture: Recent progress, challenges, and perspectives

Petroleum hydrocarbons (PHs) are used as raw materials in many industries and primary energy sources. However, excessive PHs act as soil pollutants, posing serious threats to living organisms. Various ex-situ or in-situ chemical and biological methods are applied to restore polluted soil. However, most of the chemical treatment methods are expensive, environmentally unfriendly, and sometimes inefficient. That attracts scientists and researchers to develop and select new strategists to remediate polluted soil through risk-based analysis and eco-friendly manner. This review discusses the sources of PHs, properties, distribution, transport, and fate in the environment, internal and external factors affecting the soil remediation and restoration process, and its effective re-utilization for agriculture. Bioremediation is an eco-friendly method for degrading PHs, specifically by using microorganisms. Next-generation sequencing (NGS) technologies are being used to monitor contaminated sites. Currently, these new technologies have caused a paradigm shift by giving new insights into the microbially mediated biodegradation processes by targeting rRNA are discussed concisely. The recent development of risk-based management for soil contamination and its challenges and future perspectives are also discussed. Furthermore, nanotechnology seems very promising for effective soil remediation, but its success depends on its cost-effectiveness. This review paper suggests using bio-electrochemical systems that utilize electro-chemically active microorganisms to remediate and restore polluted soil with PHs that would be eco-friendlier and help tailor-made effective and sustainable remediation technologies.

Soil initial bacterial diversity and nutrient availability determine the rate of xenobiotic biodegradation

Understanding the relative importance of soil microbial diversity, plants and nutrient management is crucial to implement an effective bioremediation approach to xenobiotics-contaminated soils. To date, knowledge on the interactive effects of soil microbiome, plant and nutrient supply on influencing biodegradation potential of soils remains limited. In this study, we evaluated the individual and interactive effects of soil initial bacterial diversity, nutrient amendments (organic and inorganic) and plant presence on the biodegradation rate of pyrene, a polycyclic aromatic hydrocarbon. Initial bacterial diversity had a strong positive impact on soil biodegradation potential, with soil harbouring higher bacterial diversity showing ~ 2 times higher degradation rates than soils with lower bacterial diversity. Both organic and inorganic nutrient amendments consistently improved the degradation rate in lower diversity soils and had negative (inorganic) to neutral (organic) effect in higher diversity soils. Interestingly, plant presence/type did not show any significant effect on the degradation rate in most of the treatments. Structural equation modelling demonstrated that initial bacterial diversity had a prominent role in driving pyrene biodegradation rates. We provide novel evidence that suggests that soil initial microbial diversity, and nutrient amendments should be explicitly considered in the design and employment of bioremediation management strategies for restoring natural habitats disturbed by organic pollutants.

Combined Application of Citric Acid and Cr Resistant Microbes Improved Castor Bean Growth and Photosynthesis while It Alleviated Cr Toxicity by Reducing Cr+6 to Cr3

Chromium is highly harmful to plants because of its detrimental effects on the availability of vital nutrients and secondary metabolites required for proper plant growth and development. A hydroponic experiment was carried out to analyze the effect of citric acid on castor bean plants under chromium stress. Furthermore, the role of two chromium-resistant microorganisms, Bacillus subtilis and Staphylococcus aureus, in reducing Cr toxicity was investigated. Different amounts of chromium (0 µM, 100 µM, 200 µM) and citric acid (0 mM, 2.5 mM, and 5 mM) were used both alone and in combination to analyze the remediation potential. Results showed that elevated amounts of chromium (specifically 200 µM) minimized the growth and biomass because the high concentration of Cr induced the oxidative markers. Exogenous citric acid treatment boosted plant growth and development by improving photosynthesis via enzymes such as superoxide dismutase, guaiacol peroxidase, catalase, and ascorbate peroxidase, which decreased Cr toxicity. The application of citric acid helped the plants to produce a high concentration of antioxidants which countered the oxidants produced due to chromium stress. It revealed that castor bean plants treated with citric acid could offset the stress injuries by decreasing the H₂O₂, electrolyte leakage, and malondialdehyde levels. The inoculation of plants with bacteria further boosted the plant growth parameters by improving photosynthesis and reducing the chromium-induced toxicity in the plants. The findings demonstrated that the combination of citric acid and metal-resistant bacteria could be a valuable technique for heavy metal remediation and mediating the adverse effects of metal toxicity on plants.

New research on water, waste and energy management, with special focus on antibiotics and priority pollutants

The Editors of the Virtual Special Issue (VSI) "New Research on Water, Waste and Energy Management, with Special Focus on Antibiotics and Priority Pollutants" (VSI WWEM-20) here present details corresponding to papers that have been accepted, as well as further comments on the matter. It should be noted that the VSI should be associated to a Conference that had been initially programmed to be held in Rome during the summer of 2020, Unfortunately, it was postponed due to the COVID-19 pandemic. That conference was one of those within the series called "International Congress on Water, Waste and Energy Management". Although the Conference was postponed, the Call for Papers for the VSI was maintained by this journal. As a result, a set of very interesting papers were accepted after a careful peer-review process. We hope that it will be complemented with additional VSIs associated to future conferences corresponding to the series, increasing the knowledge on the topic.

Rhizosphere Bacteria in Plant Growth Promotion, Biocontrol, and Bioremediation of Contaminated Sites: A Comprehensive Review of Effects and Mechanisms

Agriculture in the 21st century is facing multiple challenges, such as those related to soil fertility, climatic fluctuations, environmental degradation, urbanization, and the increase in food demand for the increasing world population. In the meanwhile, the scientific community is facing key challenges in increasing crop production from the existing land base. In this regard, traditional farming has witnessed enhanced per acre crop yields due to irregular and injudicious use of agrochemicals, including pesticides and synthetic fertilizers, but at a substantial environmental cost. Another major concern in modern agriculture is that crop pests are developing pesticide resistance. Therefore, the future of sustainable crop production requires the use of alternative strategies that can enhance crop yields in an environmentally sound manner. The application of rhizobacteria, specifically, plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides has gained much attention from the scientific community. These rhizobacteria harbor a number of mechanisms through which they promote plant growth, control plant pests, and induce resistance to various abiotic stresses. This review presents a comprehensive overview of the mechanisms of rhizobacteria involved in plant growth promotion, biocontrol of pests, and bioremediation of contaminated soils. It also focuses on the effects of PGPR inoculation on plant growth survival under environmental stress. Furthermore, the pros and cons of rhizobacterial application along with future directions for the sustainable use of rhizobacteria in agriculture are discussed in depth.

Role of PGPR on the physiology of sunflower irrigated with produced water containing high total dissolved solids (TDS) and its residual effects on soil fertility

The present study was conducted to evaluate the bioremediation potential of plant growth-promoting rhizobacteria (PGPR) PGPR isolates from high total dissolved solids (TDS) bearing produced water on the water quality, soil physicochemical properties and growth and physiology of sunflower irrigated with high TDS bearing produced water having salinity level 130 times higher above seawater and also containing traces of oil and grease. Seeds of sunflower hybrid Parsun 3 were soaked for 3-4 h prior to sowing in 72 h old culture of PGPR strains W1 and W2 isolated from high TDS bearing polluted water. The control plants were irrigated with 90% diluted TDS water supplemented with 5 ml LB media. Whereas, the inoculated plants were irrigated with 90% diluted TDS water supplemented with 5 ml PGPR inocula.in LB media. The plants were grown under natural conditions. The 16S rRNA sequence analyses identified the isolate W1 bearing 100% similarity with the plant growth-promoting rhizobacteria (PGPR) Ralstonia pickettii and W2 bearing 99.7% similarity with Brevibacillus invocatus. Both the isolate were catalase and oxidase positive. The Ralstonia pickettii and Brevibacillus invocatus treatments decreased the EC and TDS values significantly such that the EC and TDS values of 90% diluted TDS water were 29 times and 19 times higher than tap water. Sodium adsorption ratio (SAR), organic matter, nitrogen, potassium, magnesium and carbon content were 1.96, 1.10, 2.28 1.20, 6.63 and 1.00 times greater than control in the rhizosphere soil of Ralstonia pickettii inoculated plants irrigated with high TDS bearing water There were significant increases in plant growth, sugar, flavonoids and phenolics, chlorophyll b, total chlorophyll, carotenoids content and activities of superoxide dismutase, catalase and peroxidase in plants inoculated with Ralstonia pickettii and Brevibacillus invocatus. The flavonoids, phenolics and proline contents were 0.54, 0.72 and 0.30 times higher in Ralstonia pickettii inoculated plants. Shoot/root dry weight ratio was about (50%) lower than control in Ralstonia pickettii and Brevibacillus invocatus treatments. Ralstonia pickettii was more effective than Brevibacillus invocatus to combat oxidative and osmotic stresses. It is inferred that the high TDS bearing produced water from oil factory harbor Plant growth-promoting rhizobacteria (PGPR) having the potential to combat high salinity stress in plants when used as bioinoculant. The broth culture containing the bacteria may be supplemented with the saline water used for irrigation as it provides nutrients for the growth and proliferation of bacteria present in the saline water and hence the synergistic action of bacterial inocula with the indigenous bacteria present in saline water may better alleviate osmotic and oxidative stresses of plants encountered under salinity stress. The residual effect of Ralstonia pickettii on organic matter and Ca, Mg, K and P content of the rhizosphere soil was notably higher for succeeding crops. Novelty statement This is the first report demonstrating that rhizobacteria can proliferate in water containing salinity higher above seawater in addition to oil grease and TSS. Their efficiency to reduce TDS can be augmented by an exogenous supply of LB broth culture of PGPR isolated from the polluted water. These indigenous rhizobacteria when used as bioinoculant on the plant can act as plant growth promoters as well as bioremediation of salinity effects.

Isolation and Characterization of Oil-Degrading Enterobacter sp. from Naturally Hydrocarbon-Contaminated Soils and Their Potential Use against the Bioremediation of Crude Oil

The contamination of crude oil in soil matrices is a persistent problem with negative repercussions because of the recalcitrant, hazardous, and mutagenic properties of its constituents. To mitigate the effect of crude oil contamination in soil, the use of microorganisms is a cheap and feasible option. In the current study, bacterial species from numerous polluted oil field surfaces were isolated and examined for their ability to degrade crude oil. Random soil samples polluted with hydrocarbons were collected and various bacterial isolates were isolated. Results revealed that 40% of total isolates had potential use for hydrocarbon biodegradation, the synthesis of exopolysaccharides and the solubilization of phosphorous. Following isolation and characterization to degrade crude oil, a pot trial was conducted using maize inoculated with the four best strains—i.e., S1 (PMEL-63), S2 (PMEL-67), S3 (PMEL-80), and S4 (PMEL-79)—in artificially hydrocarbon-polluted soil with concentrations of crude oil of 0, 1000, and 2000 ppm. Results revealed that S4 (PMEL-79) had significant potential to degrade hydrocarbon in polluted soils. The root length, shoot length, and fresh biomass of maize were increased by 65%, 45%, and 98%, respectively, in pots inoculated with S4 (PMEL-79) Enterobacter cloacae subsp., whereas the lowest root length was observed where no strain was added and the concentration of crude oil was at maximum. Moreover, S4 (PMEL-79) Enterobacter cloacae subsp. was found to be the most effective strain in degrading crude oil and increasing maize growth under polluted soil conditions. It was concluded that the isolation of microorganisms from oil-contaminated sites should be considered in order to identify the most effective microbial consortium for the biodegradation of naturally hydrocarbon-contaminated soils.