Distribution and ecological relevance of fine sediments in organic-enriched lagoons: the case study of the Cabras lagoon (Sardinia, Italy)

Taxonomic distinctness and diversity patterns of a polychaete (Annelida) community on the continental shelf of the Southern Gulf of Mexico

The spatial patterns of taxonomic diversity of annelid polychaete species from the continental shelf in the Southern Gulf of Mexico were examined in this study. We used taxonomic distinctness and its spatial variations to explore the diversity patterns and how they change between Southern Gulf of Mexico regions. In addition, using taxonomic distinctness as a dissimilarity measure and Ward's Clustering, we characterized three distinct faunal assemblages. We also investigated patterns of richness, taxonomic distinctness, and distance decay of similarity between sampling stations as a ß-diversity measure. Finally, we examined the spatial relationships between polychaete assemblages and environmental variables to test the relative importance of spatial and environmental components in annelid polychaete community structure from the Southern Gulf of Mexico. We used a combination of eigenvector-based multivariate analyses (dbMEMs) and distance-based redundancy analysis (dbRDA) to quantify the relative importance of these explanatory variables on the spatial variations of taxonomic distinctness. The significance level of spatial and environmental components to the distribution of polychaete species showed that the combined effect of spatial processes and sediment characteristics explained a higher percentage of the variance than those parameters could alone.

Variability of soft-bottom macrobenthic invertebrates at different spatial scales: Comparisons between habitats and seasons

Studies focusing on patterns of spatial variation in marine soft-bottom assemblages suggest that variability is mainly concentrated at small spatial scale (from tens of centimeters to few meters), but there is still a lack of knowledge about the consistency of this spatial pattern across habitats and seasons. To address this issue, we quantified the variability in the structure of macrozoobenthic assemblages and in the abundance of dominant macroinvertebrate species in the Mellah Lagoon (Algeria) at three spatial scales, i.e., Plot (meters apart), Station (10's m apart) and Site (kms apart) scale, in Ruppia maritima (Ruppia) beds and unvegetated sediments (Unvegetated), and in two dates in winter and two dates in summer 2016. Spatial variability of the most dominant bivalve Mytilaster marioni varied significantly between habitats, but consistent across the two seasons, with a more heterogeneous distribution in Ruppia than in Unvegetated at the Station scale. Furthermore, a second-order interaction among the hierarchical nature of spatial variability, season and habitat emerged for the assemblage structure. Spatial variability between habitats varied significantly in winter, with the largest variation at the Plot scale in Unvegetated and more heterogenous assemblages at the Plot and Site scales than at the Station scale in Ruppia, but did not vary in summer when most of the variance was at the Site scale. We demonstrate that the scales of influence of the processes operating in the Mellah Lagoon are contingent on the specific habitat and/or period of the year at which the study was conducted, highlighting the importance of examining all these sources of variation simultaneously to increase the accuracy of explanatory models derived from the observed patterns in sedimentary environments.

Functional trait responses of macrobenthic communities in seagrass microhabitats of a temperate lagoon

Understanding the effects of habitat heterogeneity on the functioning of macrobenthic communities is essential to the conservation of biodiversity in coastal ecosystems. However, the effects of habitat heterogeneity on the functional trait composition and diversity of seagrass bed macrobenthos are as scarce. In the present study, functional diversity indices (i.e., functional dispersion, functional richness, and Rao's quadratic entropy), RLQ analysis, and fourth-corner analysis indicated that macrobenthic functional trait composition and diversity differ among seagrass bed microhabitats (interior, edge, and bare sediment). More specifically, functional traits were more evenly distributed in the seagrass bed interior and edge habitats, when compared to bare sediment, and functional diversity was significantly higher (p < 0.01). Functional trait distributions were influenced by environmental parameters (e.g., total organic carbon, organic matter, and grain size). Suspension-feeding and burrowing bivalves preferentially inhabited bare sediment with high sand content and low TOC, whereas herbivorous, small, and sensitive species mainly inhabited muddy sediments with higher organic supply.

Anatomy of Anthropically Controlled Natural Lagoons through Geophysical, Geological, and Remote Sensing Observations: The Valli Di Comacchio (NE Italy) Case Study

Newly collected morphobathymetric and seismic reflection data from the Valli di Comacchio coastal lagoons, south of the Po River delta (Northeast Italy), combined with historical, remote sensing, and geodetic data highlight a complex geological evolution during the Holocene, strongly affected by anthropic control. All data allowed us to define the present-day depositional environment of the lagoons and reconstruct their recent (late Pleistocene/Holocene) geo-history. We focused on the effects of the anthropic impacts in modifying the pristine environments created by the Holocene transgression along the Adriatic Sea coast, at the mouth of a major river. They include land reclamation works, artificial damming, channel excavations, fluvial diversions, and a recent (last decades) increase in subsidence rate due to gas and water withdrawals. Despite the development of economic activities, which promoted occupation and exploitation of this area in the last millennia, the post-Glacial evolution of the lagoons shows the important role of inherited morphological features, such as sand ridges and barriers. This complex and relatively well-documented evolution makes the Comacchio lagoons a unique example of deep connections between natural processes and long-term human controls, offering insights into the management policies of these important and delicate environments challenged by global changes.

Distribution of dinoflagellate cyst assemblages in recent sediments from a southern Mediterranean lagoon (Mellah, Algeria) with emphasis on toxic species

This is the first study on the dinoflagellate cysts in Algerian waters and in Mellah Lagoon (South Western Mediterranean), located within a protected reserve. In total, 42 species of dinocysts belonging to 7 orders, 12 families and 23 genera, were identified in the 26 superficial sediment samples from Mellah Lagoon. The distribution of dinocysts in the sediment of this lagoon is heterogeneous. Indeed, their abundance oscillates between 1 and 315 cysts g^-1 dry sediment (DS). Cyst morphotype assemblages were dominated by a few numbers of species: Alexandrium minutum (15.87%), Gonyaulax verior (9.81%), Protoperidinium spp. (7.74%), Alexandrium affine (7.05%), Scrippsiella trochoidea (6.67%), and Alexandrium pseudogonyaulax (6.19%). There is a positive correlation between the density of cysts and the depth (r = 0.61; p < 0.05), organic matter (r = 0.70; p < 0.05), water content (r = 0.71; p < 0.05), and the fine fraction of sediment (r = 0.74; p < 0.05). Surprisingly, although the Mellah Lagoon is almost semi-closed, it holds an important specific richness in dinocysts (42 species) higher than others observed in Mediterranean lagoons. However, cyst abundances are low compared to other lagoons in the Mediterranean Sea. Finally, the presence of dinocysts of Alexandrium catenella/tamarense, A. minutum, and Gymnodinium catenatum associated to paralytic shellfish toxins, A. pseudogonyaulax which produces goniodomin A, also Protoceratium reticulatum and Gonyaulax spinifera complex which produce yessotoxins, needs to implement a monitoring program to prevent a potential human intoxication due to the consumption of contaminated sea products by these potent neurotoxins.

Chemical fingerprint of plastic litter in sediments and holothurians from Croatia: Assessment & relation to different environmental factors

This paper increases knowledge on litter transfer from sediments towards the trophic web throughout sea cucumbers, key protected benthic species. In October, sediment and holothurian samples from seventeen sampling sites from Croatian Islands characterized by different levels of protection (Silba n = 7; Telašćica MPA n = 10) were collected. Collected particles ranged in sediments within 113.4-377.8 items/kg d.w., and in holothurians within 0.6-9.4 items/animal, showing sizes within 1.4-10,493 μm. In holothurians, cellulose and cellulose acetate (non-synthetic materials) mean percentages were within 5.0-12.7% of the total amount of particles. Nylon fibres ranged within 0-26.7%; while PP, PE, PA, and PS% were more abundant than in sediments. Among factors of variability tested, "island group" and "level of protection" resulted to affect plastic composition in sediments. Otherwise, other environmental factors (i.e. orientation, morphology of sampling site, P. oceanica) were significantly related to chemical composition of microplastic ingested by holothurians.

Sediment bacterial communities associated with environmental factors in Intermittently Closed and Open Lakes and Lagoons (ICOLLs)

Intermittently Closed and Open Lakes and Lagoons (ICOLLS) are important coastal systems that are periodically separated from the ocean by a sand barrier or a berm. In urban ICOLLs, continuous inputs of organic material and nutrients into coastal lagoons are contributing to eutrophic conditions that, together with natural environmental factors have implications for the resident sediment bacterial communities. We used molecular tools to investigate the ecological communities of four ICOLLs; Narrabeen, Dee Why, Curl Curl and Manly in Sydney, Australia, which have been subjected to increasing pressure from anthropogenic activities over the last century. We used targeted gene sequencing of the prokaryotic 16S ribosomal RNA gene to describe the bacterial diversity and community structure and discuss differences with respect to environmental factors at the ICOLL scale (e.g. size, shape, normalised N loading) and site scale (e.g. water and sediment quality) within each lagoon. Due to differences in hydrological patterns, we expected that sediment bacterial communities would be more heterogenous in displacement-dominated lagoons (Curl Curl and Manly) than the mixing-dominated lagoons (Narrabeen and Dee Why). Interestingly, we did not find strong relationships between the main bacterial groups and distance from the lagoon entrance (used as a proxy for salinity and silt) in the displacement-dominated lagoons. Moreover, we found that α diversity was highest in Narrabeen and Manly lagoons despite differences in lagoon size and shape. Furthermore, while bacterial community structure was similar in Curl Curl and Dee Why, communities in Manly and Narrabeen differed along temperature/TOC and salinity/silt gradients respectively. In Manly lagoon, we found relatively more anaerobic bacteria such as Epsilonbactereota which is involved in the oxidation and reduction of sulfur compounds. Moreover, we identified several bacterial taxa (including sulfur metabolising Chlorobiaceae) related to increasing TOC that could be investigated further as potential indicators of excess enrichment.

Critical Processes of Trace Metals Mobility in Transitional Waters: Implications from the Remote, Antinioti Lagoon, Corfu Island, Greece

The Antinioti Lagoon is a karstified, rather pristine, and shallow coastal lagoon located in the northern part of Corfu Island in NW Greece. The present study examines the levels of metals (Al, Fe, Mn, Cd, Cu, Pb, and Zn) in the dissolved and particulate phase, as well as in surface and core sediments, and identifies the critical processes that define their behavior. The major transport pathway of dissolved Mn, Cd, and Pb, and particulate Mn, Cd, and Zn into the lagoon is through freshwater springs, whereas surface runoff dominates the transport of particulate Al, Fe, and Cu. Interestingly, large particles (>8 μm) contain higher amounts of Al, Fe and Mn than the finer ones (<8 μm), due to flocculation of oxyhydroxides that, eventually, scavenge other metals, as well. Cadmium and Zn bound to the large particles were found to be less prone to desorption than the smaller ones and were effectively captured within the lagoon. In the sediments, diagenetic processes are responsible for post-depositional changes in the forms of metals (particularly Fe, Mn and Cd). Enrichment factors (EFs) based on local background showed that sediments are enriched in restricted areas in Cd and Pb by maximum factors 4.8 and 10, respectively. These metals were predominantly found in potentially labile forms. Thus, any interventions introducing changes in the physico-chemical conditions may result in the release of metals, with negative implications on the lagoon’s ecological quality.

Meiofaunal Dynamics and Heterogeneity along Salinity and Trophic Gradients in a Mediterranean Transitional System

The spatiotemporal variation in meiofaunal assemblages were investigated for the first time in the Cabras Lagoon, the largest transitional system in the Sardinian Island (W-Mediterranean Sea). Two main environmental (salinity and trophic) gradients highlighted a significant separation of the three study sites across the lagoon, which were consistent through time. The environmental variability and habitat heterogeneity of the Cabras Lagoon influenced the meiofauna. In particular, salinity and dissolved oxygen, primarily, shaped the meiofaunal assemblage structure at the seaward site which was significantly different from both the riverine and the organically enriched sites. On the other hand, the trophic components (e.g., organic matter, Chlorophyll-a, and phaeopigments) and the different degrees of confinement and saprobity among sites were the secondary factors contributing mostly to the separation between the latter two sites. The lack of significant differences in the temporal comparison of the meiofaunal assemblage structure along with the very low contribution of temperature to the meiofaunal ordination indicated that this assemblage was more affected by spatial rather than by temporal variation. This pattern was also supported by significant differences between the three sites in several univariate measures, including total number of individuals, number of taxa, Pielou’s evenness, and the ratio between nematodes and copepods. Thus, the present study corroborates the hypothesis that meiofaunal organisms are good indicators of the spatial heterogeneity in transitional waters (TWs) and could have a greater species richness than that expected. Indeed, the Cabras Lagoon overall showed one of the highest meiofaunal richness values found from both Mediterranean and European TWs.

Spatiotemporal variation in environmental features and elemental/isotopic composition of organic matter sources and primary producers in the Yundang Lagoon (Xiamen, China)

Aquatic eutrophication is a major problem globally, leading to significant chemical-compositional changes in the first trophic levels of a food web. These will consequently affect the whole food web dynamics in eutrophic coastal ecosystems. In this study, we analyzed the spatiotemporal variation in water chlorophyll-a, total organic carbon (TOC) and TOC/Chl-a ratio, and in the elemental/isotopic (C_at/N_at, δ¹³C, δ¹⁵N) composition of particulate organic matter (POM), phytoplankton, sedimentary organic matter, benthic microalgae, U. lactuca, and decaying leaves of mangrove plants in the eutrophic, urban lagoon of Yundang (Xiamen, China). Investigations were carried out in four different sectors of the lagoon in March (dominated by Ulva lactuca) and September (dominated by phytoplankton) 2009, and the feasible contribution of potential organic matter (OM) sources to POM was assessed in each period. The results showed significant spatiotemporal variation in δ¹³C and δ¹⁵N of POM, owing to changes in its carbon sources. The POM in the diversion canal (POM_DC) of the lagoon originated mainly from terrestrial OM both in March and September, as evidenced by a C_at/N_at ratio of 12~17 and a TOC/Chl-a ratio exceeding 400, as well as depleted δ¹³C (- 27.3~- 23.7‰) and δ¹⁵N (- 2.8~0.1‰). The POM in the main canal (POM_MC) and the inner (POM_IL) and outer (POM_OL) sectors of the lagoon were largely composed of lagoon-borne phytoplankton in September. This was revealed by TOC/Chl-a values below 100 and enriched δ¹³C values (- 22.7~- 17.9‰) which are close to the values typical for fresh phytoplankton. However, these were strongly regulated by exogenous OM in March. The combined contribution of POM_MC and POM_DC to POM in March reached 64-99% in the inner lagoon and 67-88% in the outer lagoon. Non-living POM, which originates from terrestrial organic detritus, was the main contributor to POM (60.7~85.7%) both in the inner and outer sections of the lagoon. Overall, the present study demonstrates that the temporal changes in the dominance of primary producers were reflected in significant variation in the environmental features and elemental/isotopic composition of OM sources and their contribution to POM in the Yundang Lagoon. To further our understanding of the effects of eutrophication due to different primary producers on the resource partitioning in the Yundang Lagoon, additional studies on the consumers and the whole food web of the lagoon are expected.

Assessment of temporal and spatial water quality in international Gomishan Lagoon, Iran, using multivariate analysis

Coastal lagoon ecosystems are vulnerable to eutrophication, which leads to the accumulation of nutrients from the surrounding watershed over the long term. However, there is a lack of information about methods that could accurate quantify this problem in rapidly developed countries. Therefore, various statistical methods such as cluster analysis (CA), principal component analysis (PCA), partial least square (PLS), principal component regression (PCR), and ordinary least squares regression (OLS) were used in this study to estimate total organic matter content in sediments (TOM) using other parameters such as temperature, dissolved oxygen (DO), pH, electrical conductivity (EC), nitrite (NO₂), nitrate (NO₃), biological oxygen demand (BOD), phosphate (PO₄), total phosphorus (TP), salinity, and water depth along a 3-km transect in the Gomishan Lagoon (Iran). Results indicated that nutrient concentration and the dissolved oxygen gradient were the most significant parameters in the lagoon water quality heterogeneity. Additionally, anoxia at the bottom of the lagoon in sediments and re-suspension of the sediments were the main factors affecting internal nutrient loading. To validate the models, R², RMSECV, and RPDCV were used. The PLS model was stronger than the other models. Also, classification analysis of the Gomishan Lagoon identified two hydrological zones: (i) a North Zone characterized by higher water exchange, higher dissolved oxygen and lower salinity and nutrients, and (ii) a Central and South Zone with high residence time, higher nutrient concentrations, lower dissolved oxygen, and higher salinity. A recommendation for the management of coastal lagoons, specifically the Gomishan Lagoon, to decrease or eliminate nutrient loadings is discussed and should be transferred to policy makers, the scientific community, and local inhabitants.

Seasonal Fluctuations of Trace Elements from Different Habitats of Orbetello Lagoon (Thyrrenian Sea, Italy)

This study evaluated seasonal fluctuations of trace elements of major ecotoxicological concern in sediments and their uptakes by the aquatic vegetation indifferent undisturbed habitats from the Orbetello lagoon, correlating measured levels to abiotic and biotic drivers to scale the significant of their effect on observed seasonal variability of trace elements. Results show that under natural undisturbed conditions, observed seasonal fluctuations in different habitats are statistically correlated to temperature, salinity, and turbidity of water and total nutrients in sediments. These variables and the habitat type dominated by macroalgae (C. linum) play a significant role as drivers of variability for measured trace elements in sediments. This study represents a reference undisturbed condition of natural seasonal trends of trace elements in different habitat types before the occurrence of numerous impacting activities on sediments and could represent a useful baseline for further management evaluations after the occurrence of sediment disturbance actions planned for the near future.

Baseline concentrations and distributions of Polycyclic Aromatic Hydrocarbons in surface sediments from the Qatar marine environment

Coastal sediments in marine waters of Qatar have the potential of being contaminated by Polycyclic Aromatic Hydrocarbons (PAHs) due to extensive petroleum exploration and transportation activities within Qatar's Marine Exclusive Economic Zone. In this study, the concentration and distribution of sixteen PAHs classed as USEPA priority pollutants were measured in sediments from the eastern Qatari coast. PAHs were recovered from sediments via accelerated solvent extraction and then analyzed using Gas Chromatography-Mass Spectrometry. Total concentrations of the PAHs were in the range of 3.15-14.35μg/kg, and the spatial distribution of PAHs is evaluated in the context of sediment total organic content, depth and the grain size together with and the proximity of petroleum exploration and transportation activities. The data show that the concentrations of PAHs within the study area were in the low-range, suggesting a low risk to marine organisms and limited transfer of PAHs into the food web.

Effects of Zostera marina on the patterns of spatial distribution of sediments and macrozoobenthos in the boreal lagoon of Furen (Hokkaido, Japan)

Understanding patterns of spatial variations in benthic seagrass assemblages is a central issue in seagrass ecology. However, how patterns of spatial variations in macrozoobenthos and associated sediments differ between vegetated and unvegetated areas remain largely unexplored. In the present study, two different habitats represented by dense Zostera marina beds (Zostera) and unvegetated sediments (Bare) were compared at three locations, 100's meters apart, located at progressive distance from the Furen river in the boreal lagoon of Furen (Hokkaido, Japan). We tested the hypothesis that Z. marina influences the patterns of spatial distribution of abiotic and biotic components along an environmental (estuarine) gradient. The results showed considerable differences between Zostera and Bare, as well as between and within locations, in the distribution of both sediment variables (mud, total organic carbon [TOC] and total nitrogen, acid volatile sulfide, chlorophyll-a and pheopigments) and macrozoobenthic assemblage metrics (total number of species [S], Shannon-Weiner diversity index [H'], total abundance and abundance of dominant species). TOC content, associated to a high mud content, was highest in Bare irrespective of differences between locations (all being above a critical TOC threshold of 3.6%), while S and H' were higher in Zostera than in Bare at all locations. Significant location x habitat effects were found in the abundance of dominant species, represented mainly by mollusks and crustaceans. Furthermore, the proportions of spatial variance were greater at the scale of replicates (meters apart) than at the scale of stations (10's meters apart) for both sediment variables and the dominant species. Importantly, for the dominant species the spatial variance at the smaller scale was much higher in Zostera than in Bare, indicating that at the scale of meters Zostera beds increase the patchiness in the spatial distribution of individuals compared to bare sediments. Overall, our results demonstrate that Z. marina has a strong effect on the spatial heterogeneity in the intensity of the ecological processes influencing patterns of sediment and macrozoobenthos distribution along an environmental gradient. The present study provides a general framework to evaluate patterns of spatial distribution across various scales within several hundreds of meters in seagrass-dominated, eutrophic coastal lagoons.

Impact of prolonged storm activity on the Ecological Status of intertidal benthic habitats within oyster (Crassostrea gigas) trestle cultivation sites

The Ecological Status (ES; sensu the Water Framework Directive) of intertidal benthic communities within six oyster trestle cultivation sites was found to be negatively impacted along the access routes to trestles in a 2013 study. All cultivation sites occur within Natura 2000 sites. The current study revisited four of the 2013 cultivation sites in February 2014 one month after the storm activity of winter 2013/14 to test if the compaction effect along access routes persisted after the storms. Three levels of the fixed factor treatment were sampled; immediately below the trestles, along the access route and 300m away from any anthropogenic activity. The compaction effect at the Access treatment persisted in spite of the major storm activity. The current study showed the IQI to be effective for assessing the impacts of aquaculture and highlights the IQI as a tool for monitoring Conservation Status of intertidal communities under the Habitats Directive.

Effects of sedimentary sulfide on community structure, population dynamics, and colonization depth of macrozoobenthos in organic-rich estuarine sediments

An annual field survey and in situ recolonization experiment revealed the effects of sedimentary sulfide (H2S) on macrozoobenthos in a eutrophic brackish lagoon. Species diversity was much lower throughout the year in muddy opportunist-dominant sulfidic areas. Mass mortality occurred during warmer months under elevated H2S levels. An enclosure experiment demonstrated that sedimentary H2S modified community composition, size structure, and colonization depth of macrozoobenthos. Species-specific responses to each sediment type (sand, sulfidic mud, and mud with H2S removed) resulted in changes in the established community structure. Dominant polychaetes (Hediste spp., Pseudopolydora spp., and Capitella teleta) occurred predominantly in a thin surface layer in the presence of H2S. On the other hand, organic-rich mud facilitated settlement of polychaete larvae if it does not contain H2S. These results demonstrate that sediment characteristics, including H2S level and organic content, were key structuring factors for the macrozoobenthic assemblage in organically polluted estuarine sediments.

Discriminant analysis for the prediction of sand mass distribution in an urban stormwater holding pond using simulated depth average flow velocity data

The approach of this paper is to predict the sand mass distribution in an urban stormwater holding pond at the Stormwater Management And Road Tunnel (SMART) Control Centre, Malaysia, using simulated depth average floodwater velocity diverted into the holding during storm events. Discriminant analysis (DA) was applied to derive the classification function to spatially distinguish areas of relatively high and low sand mass compositions based on the simulated water velocity variations at corresponding locations of gravimetrically measured sand mass composition of surface sediment samples. Three inflow parameter values, 16, 40 and 80 m(3) s(-1), representing diverted floodwater discharge for three storm event conditions were fixed as input parameters of the hydrodynamic model. The sand (grain size > 0.063 mm) mass composition of the surface sediment measured at 29 sampling locations ranges from 3.7 to 45.5%. The sampling locations of the surface sediment were spatially clustered into two groups based on the sand mass composition. The sand mass composition of group 1 is relatively lower (3.69 to 12.20%) compared to group 2 (16.90 to 45.55%). Two Fisher's linear discriminant functions, F 1 and F 2, were generated to predict areas; both consist of relatively higher and lower sand mass compositions based on the relationship between the simulated flow velocity and the measured surface sand composition at corresponding sampling locations. F 1 = -9.405 + 4232.119 × A - 1795.805 × B + 281.224 × C, and F 2 = -2.842 + 2725.137 × A - 1307.688 × B + 231.353 × C. A, B and C represent the simulated flow velocity generated by inflow parameter values of 16, 40 and 80 m(3) s(-1), respectively. The model correctly predicts 88.9 and 100.0% of sampling locations consisting of relatively high and low sand mass percentages, respectively, with the cross-validated classification showing that, overall, 82.8% are correctly classified. The model predicts that 31.4% of the model domain areas consist of high-sand mass composition areas and the remaining 68.6% comprise low-sand mass composition areas.

A chemical status predictor. A methodology based on World-Wide sediment samples

As a consequence of the limited resources of underdeveloped countries and the limited interest of the developed ones, the assessment of the chemical quality of entire water bodies around the world is a utopia in the near future. The methodology described here may serve as a first approach for the fast identification of water bodies that do not meet the good chemical status demanded by the European Water Framework Directive (WFD). It also allows estimating the natural background (or reference values of concentration) of the areas under study using a simple criterion. The starting point is the calculation the World-Wide Natural Background Levels (WWNBLs) and World-Wide Threshold Values (WWTVs), two indexes that depend on the concentration of seven elements present in sediments. These elements, As, Cd, Cr, Cu, Ni, Pb and Zn, have been selected taking into account the recommendations of the UNEP (United Nations Environment Programme) and USEPA (United States Environmental Protection Agency), that describe them as elements of concern with respect to environmental toxicity. The methodology has been exemplified in a case study that includes 134 sediment samples collected in 11 transitional water bodies from 7 different countries and 4 different continents. Six of the water bodies considered met the good chemical status demanded by the WFD. The rest of them exceeded the reference WWTVs, at least for one of the elements. The estuaries of the Nerbioi-Ibaizabal (Basque Country) and Cavado (Portugal), the sea inlet of Río San Pedro (Spain), the Sepetiba Bay (Brazil) and the Yucateco lagoon (Mexico) belong to that group.

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation

OBJECTIVES

The marine benthic nitrogen cycle is affected by both the presence and activity of macrofauna and the diversity of N-cycling microbes. However, integrated research simultaneously investigating macrofauna, microbes and N-cycling is lacking. We investigated spatio-temporal patterns in microbial community composition and diversity, macrofaunal abundance and their sediment reworking activity, and N-cycling in seven subtidal stations in the Southern North Sea.

SPATIO-TEMPORAL PATTERNS OF THE MICROBIAL COMMUNITIES

Our results indicated that bacteria (total and β-AOB) showed more spatio-temporal variation than archaea (total and AOA) as sedimentation of organic matter and the subsequent changes in the environment had a stronger impact on their community composition and diversity indices in our study area. However, spatio-temporal patterns of total bacterial and β-AOB communities were different and related to the availability of ammonium for the autotrophic β-AOB. Highest bacterial richness and diversity were observed in June at the timing of the phytoplankton bloom deposition, while richness of β-AOB as well as AOA peaked in September. Total archaeal community showed no temporal variation in diversity indices.

MACROFAUNA, MICROBES AND THE BENTHIC N-CYCLE

Distance based linear models revealed that, independent from the effect of grain size and the quality and quantity of sediment organic matter, nitrification and N-mineralization were affected by respectively the diversity of metabolically active β-AOB and AOA, and the total bacteria, near the sediment-water interface. Separate models demonstrated a significant and independent effect of macrofaunal activities on community composition and richness of total bacteria, and diversity indices of metabolically active AOA. Diversity of β-AOB was significantly affected by macrofaunal abundance. Our results support the link between microbial biodiversity and ecosystem functioning in marine sediments, and provided broad correlative support for the hypothesis that this relationship is modulated by macrofaunal activity. We hypothesized that the latter effect can be explained by their bioturbating and bio-irrigating activities, increasing the spatial complexity of the biogeochemical environment.

Testing the saprobity hypothesis in a Mediterranean lagoon: effects of confinement and organic enrichment on benthic communities

The macrobenthic community was compared at four sites characterized by varying degrees of freshwater input, organic enrichment and confinement in the Cabras lagoon (Sardinia, Italy). Three sites, riverine (C1), confined (C2) and seaward (C3), were studied on two dates of summer 2010 and on two dates of winter 2011. A fourth site (C12), representative of the central sector of the Cabras lagoon, was included in this study using the extensive historical datasets at our disposal from previously published work. We aimed to test the hypothesis that (1) the benthos is distributed according to the recently proposed concept of habitat saprobity for coastal lagoons that unifies the Pearson-Rosenberg (sensu organic enrichment) and Guélorget-Perthuisot (sensu confinement) models, and (2) indicator species of different saprobic levels can be identified among dominant species occurring along the saprobity gradient. Salinity was also considered as an additional agent of selection in brackish environments. Irrespective of significant seasonal changes within each site, our results highlighted major environmental and biotic differences between sites. At the northward riverine site (C1), most affected by freshwater input and with limited organic matter (OM) enrichment, Corophium orientale was the single dominant species. The most confined site (C2) was characterized by the highest levels of sedimentary OM and benthic Chlorophyll-a and by mesohaline conditions; the site was inhabited mainly by the halolimnobic Hediste diversicolor and Hydrobia spp. Site C12, characterized by a high OM load and high residence time, was dominated by the opportunistic detritivorous Alitta succinea and Polydora ciliata. At the southernmost seaward site (C3) the considerable seawater renewal, resulting in high salinity (only in summer) and limited OM load, favored a much more diverse macrobenthic assemblage, essentially composed of both marine species, such as Corophium insidiosum, Gammarus aequicauda, and brackish-water species, such as Lekanesphaera hookeri and Idotea chelipes. We conclude that the biotic and abiotic characteristics of the Cabras lagoon can be represented by a succession of spatial zones along two main gradients determined by salinity and saprobity. The salinity gradient proved to be the main structural feature in the oligohaline pole, while in the range of variable salinity, saprobity appeared to be the main selection factor. To illustrate our findings, we provide a graphical representation summarizing the changes in environmental parameters and indicator species along the salinity and saprobity gradients.

On the myths of indicator species: issues and further consideration in the use of static concepts for ecological applications

The use of static indicator species, in which species are expected to have a similar sensitivity or tolerance to either natural or human-induced stressors, does not account for possible shifts in tolerance along natural environmental gradients and between biogeographic regions. Their indicative value may therefore be considered at least questionable. In this paper we demonstrate how species responses (i.e. abundance) to changes in sediment grain size and organic matter (OM) alter along a salinity gradient and conclude with a plea for prudency when interpreting static indicator-based quality indices. Six model species (three polychaetes, one amphipod and two bivalves) from the North Sea, Baltic Sea and the Mediterranean Sea region were selected. Our study demonstrated that there were no generic relationships between environment and biota and half of the studied species showed different responses in different seas. Consequently, the following points have to be carefully considered when applying static indicator-based quality indices: (1) species tolerances and preferences may change along environmental gradients and between different biogeographic regions, (2) as environment modifies species autecology, there is a need to adjust indicator species lists along major environmental gradients and (3) there is a risk of including sibling or cryptic species in calculating the index value of a species.

Cross-habitat interactions among bivalve species control community structure on intertidal flats

Increasing evidence shows that spatial interactions between sedentary organisms can structure communities and promote landscape complexity in many ecosystems. Here we tested the hypothesis that reef-forming mussels (Mytilus edulis L.), a dominant intertidal ecosystem engineer in the Wadden Sea, promote abundances of the burrowing bivalve Cerastoderma edule L. (cockle) in neighboring habitats at relatively long distances coastward from mussel beds. Field surveys within and around three mussel beds showed a peak in cockle densities at 50-100 m toward the coast from the mussel bed, while cockle abundances elsewhere in the study area were very low. Field transplantation of cockles showed higher survival of young cockles (2-3 years old) and increased spat fall coastward of the mussel bed compared to within the bed and to areas without mussels, whereas growth decreased within and coastward of the mussel bed. Our measurements suggest that the observed spatial patterns in cockle numbers resulted from (1) inhibition effects by the mussels close to the beds due to preemptive algal depletion and deteriorated sediment conditions and (2) facilitation effects by the mussels farther away from the beds due to reduction of wave energy. Our results imply that these spatial, scale-dependent interactions between reef-forming ecosystem engineers and surrounding communities of sedentary benthic organisms can be an important determinant of the large-scale community structure in intertidal ecosystems. Understanding this interplay between neighboring communities of sedentary species is therefore essential for effective conservation and restoration of soft-bottom intertidal communities.

A tool for protected area management: multivariate control charts 'cope' with rare variable communities

Performance assessment, impact detection, and the assessment of regulatory compliance are common scientific problems for the management of protected areas. Some habitats in protected areas, however, are rare and/or variable and are not often selected for study by ecologists because they preclude comparison with controls and high community variability makes meaningful change detection difficult. Shallow coastal saline lagoons are habitats that experience comparatively high levels of stress due to high physical variability. Lagoons are rare, declining habitats found in coastal regions throughout Europe (and elsewhere) where they are identified as one of the habitats most in need of protected area management. The infauna in the sediments of 25 lagoons were sampled. Temporal and spatial variation in three of these [protected] lagoons was investigated further over 5 years. In a multivariate analysis of community structure similarities were found between some lagoons, but in other cases communities were unique or specific to only two sites. The protected lagoons with these unique/specific communities showed significant temporal and spatial variation, yet none of the changes observed were attributed to human impacts and were interpreted as inherent variability. Multivariate control charts can operate without experimental controls and were used to assess community changes within the context of 'normal' lagoon variability. The aim of control chart analysis is to characterize background variability in a parameter and identify when a new observation deviates more than expected. In only 1 year was variability more than expected and corresponded with the coldest December in over 100 years. Multivariate control charts are likely to have wide application in the management of protected areas and other natural systems where variability and/or rarity preclude conventional analytical and experimental approaches but where assessments of condition, impact or regulatory compliance are nonetheless required.

Source characterization and spatio-temporal evolution of the metal pollution in the sediments of the Basque estuaries (Bay of Biscay)

According to Water Framework Directive requirements, Member States must identify and analyze effects derived from human pressures in aquatic systems. As different kind of pressures can impact water bodies at different scales, analyses of spatio-temporal evolution of water bodies becomes essential in order to understand ecosystem responses. In this investigation, an analysis of spatio-temporal evolution of sedimentary metal pollution (Cd, Cr, Cu, Hg, Ni, Pb, Zn) in 12 Basque estuaries (Bay of Biscay) is presented. Data collected in extensive sampling surveys is the basis for the GIS-based statistical approach used. The implementation of pollution abatement measures is reflected in a long-term decontamination process, mostly evident in estuaries with highest historical sediment pollution levels. Spatial evolution is determined by either naturally occurring or human driven processes. Such spatial processes are more obviously being reflected in estuaries with lower historical sediment pollution levels.

Disturbance of benthic macrofauna in relation to hypoxia and organic enrichment in a eutrophic coastal bay

This study demonstrated the spatiotemporal patterns of the environmental conditions and benthic macrofauna in Tokyo Bay, Japan, and investigated the factors causing disturbances in the assemblage structure. In the north-central areas, the density and species diversity of the macrobenthos was low. Although hypoxia appeared in July, defaunation occurred in August. The delayed defaunation and recolonization soon after the abatement of hypoxia were attributed to several polychaete and bivalve species that were tolerant to the hypoxic environment. In the southeastern areas, however, the density and species diversity of the macrobenthos was high throughout the year, and no defaunation was recorded. Multivariate analyses showed that the disturbance in the macrofauna correlated with organic enrichment in the sediment and bottom-water hypoxia. There is a concern about further impairment of the macrofauna in the bay due to the expansion of sediment with high levels of organic matter towards the southern regions that could cause hypoxia and subsequent defaunation.

Comparison of granulometric methods and sampling strategies used in marine habitat classification and Ecological Status assessment

Sediment particle size analysis (PSA) is routinely used to support benthic macrofaunal community distribution data in habitat mapping and Ecological Status (ES) assessment. No optimal PSA Method to explain variability in multivariate macrofaunal distribution has been identified nor have the effects of changing sampling strategy been examined. Here, we use benthic macrofaunal and PSA grabs from two embayments in the south of Ireland. Four frequently used PSA Methods and two common sampling strategies are applied. A combination of laser particle sizing and wet/dry sieving without peroxide pre-treatment to remove organics was identified as the optimal Method for explaining macrofaunal distributions. ES classifications and EUNIS sediment classification were robust to changes in PSA Method. Fauna and PSA samples returned from the same grab sample significantly decreased macrofaunal variance explained by PSA and caused ES to be classified as lower. Employing the optimal PSA Method and sampling strategy will improve benthic monitoring.

Impaired megabenthic community structure caused by summer hypoxia in a eutrophic coastal bay

Eutrophication and hypoxia are major problems affecting the health of coastal ecosystems throughout the world. Tokyo Bay, Japan, is a eutrophic coastal area where the abundance of the megabenthic community has been decreasing. To assess factors associated with the impaired biota, seasonal surveys of the megabenthic community and water and sediment quality were conducted in the bay. Cluster analysis showed a difference in the community structure between the northern and southern parts of the bay. The density of species and species diversity were high throughout the year in the southern part of the bay, whereas in the northern part of the bay species diversity was low and defaunation occurred in August. At this time, bottom hypoxia due to temperature and salinity stratification, and high concentrations of nutrients, chlorophyll a, and organic matter in the water column and/or sediment, dominated the northern part of the bay. In October, bottom hypoxia was less severe but was still present in the northern part of the bay, and recolonization by mobile fishes and sessile mussels occurred. Multivariate analyses of the megabenthic community and environmental parameters in August showed the spatial pattern of the community could be explained by concentrations of dissolved oxygen and particulate organic carbon in the bottom water, and total sulfide and total organic carbon in the sediments. In particular, impairment of the biota in the northern area could be explained by the threshold concentrations of dissolved oxygen < 1.7 mL L(-1) and total organic carbon > 20.3 mg g(-1).

Comparative study based on sediment characteristics and macrobenthic communities in two Italian lagoons

The aims of this study were to analyse sediment characteristics and macrobenthic assemblages in two very close Italian coastal lagoons (Lesina and Varano) and to assess the different behaviour between the two basins and the relationship between sediment matrix and benthic organisms within and between the two lagoons. The comparative study was performed in July 2007 at 13 sampling sites in Lesina lagoon and 15 sites in Varano basin for sediment grain size, total organic carbon (TOC), total nitrogen (TN), total phosphorus (TP) and macrobenthic structure analyses. Both lagoons were generally dominated by fine-grained sediments (clay and silt components). The average contents of TOC and TN measured in Lesina was higher than in Varano (3.31% vs 2.52% for TOC and 5,200 microg.g(-1) vs 3,713 microg.g(-1) for TN); in contrast, the TP was lower (540 microg.g(-1) vs 620 microg.g(-1)). Based on macrobenthic community patterns, the central zone in Varano lagoon and the eastern area in Lesina lagoon were characterised by the lowest abundance (168.7 ind.m(-2) and 503.2 ind.m(-2), respectively) and by the lowest number of species, as highlighted by the diversity indices (Shannon-Wiener, H' range was 0.47-1.45 for Lesina and 0.00-1.68 for Varano; Margalef species richness, d range was 0.00-1.67 for Lesina lagoon and 0.00-2.38 for Varano basin). Ordination diagrams suggested an influence of marine and freshwater inputs on the sediment distribution in Varano lagoon and on macrobenthic assemblages in Lesina lagoon.

Animal-sediment relationships: evaluating the 'Pearson-Rosenberg paradigm' in Mediterranean coastal lagoons

We investigated the applicability of the Pearson-Rosenberg (P-R) conceptual model describing a generalized pattern of response of benthic communities in relation to organic enrichment to Mediterranean Sea coastal lagoons. Consistent with P-R model predictions, benthic diversity and abundance showed two different peaks at low (>2.5-5 mg g(-1)) and high (>25-30 mg g(-1)) total organic carbon (TOC) ranges, respectively. We identified TOC thresholds indicating that risks of reduced benthic diversity should be relatively low at TOC values<about 10 mg g(-1), high at TOC values>about 28 mg g(-1), and intermediate at values in-between. Predictive ability within these ranges was high based on results of re-sampling simulation. While not a direct measure of causality, it is anticipated that these TOC thresholds should serve as a general screening-level indicator for evaluating the likelihood of reduced sediment quality and associated bioeffects in such eutrophic systems of the Mediterranean Sea.