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Corredor D, Segobin S, Hinault T, Eustache F, Dayan J, Guillery-Girard B, Naveau M. The multiscale topological organization of the functional brain network in adolescent PTSD. Cereb Cortex 2024; 34:bhae246. [PMID: 38864573 PMCID: PMC11167567 DOI: 10.1093/cercor/bhae246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 05/17/2024] [Accepted: 05/18/2024] [Indexed: 06/13/2024] Open
Abstract
The experience of an extremely aversive event can produce enduring deleterious behavioral, and neural consequences, among which posttraumatic stress disorder (PTSD) is a representative example. Although adolescence is a period of great exposure to potentially traumatic events, the effects of trauma during adolescence remain understudied in clinical neuroscience. In this exploratory work, we aim to study the whole-cortex functional organization of 14 adolescents with PTSD using a data-driven method tailored to our population of interest. To do so, we built on the network neuroscience framework and specifically on multilayer (multisubject) community analysis to study the functional connectivity of the brain. We show, across different topological scales (the number of communities composing the cortex), a hyper-colocalization between regions belonging to occipital and pericentral regions and hypo-colocalization in middle temporal, posterior-anterior medial, and frontal cortices in the adolescent PTSD group compared to a nontrauma exposed group of adolescents. These preliminary results raise the question of an altered large-scale cortical organization in adolescent PTSD, opening an interesting line of research for future investigations.
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Affiliation(s)
- David Corredor
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
| | - Shailendra Segobin
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
| | - Thomas Hinault
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
| | - Francis Eustache
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
| | - Jacques Dayan
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
- Pôle Hospitalo-Universitaire de Psychiatrie de l’Enfant et de l’Adolescent, Centre Hospitalier Guillaume Régnier, Université Rennes 1, Rennes 35700, France
| | - Bérengère Guillery-Girard
- Centre Cyceron, CHU de Caen, Neuropsychologie et Imagerie de la Mémoire Humaine, Normandie Université, UNICAEN, PSL Université Paris, EPHE, INSERM, U1077, Caen 14000, France
| | - Mikaël Naveau
- UNICAEN, CNRS, INSERM, CEA, UAR3408 CYCERON, Normandie Université, Caen 14000, France
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Yan W, Pearlson GD, Fu Z, Li X, Iraji A, Chen J, Sui J, Volkow ND, Calhoun VD. A Brainwide Risk Score for Psychiatric Disorder Evaluated in a Large Adolescent Population Reveals Increased Divergence Among Higher-Risk Groups Relative to Control Participants. Biol Psychiatry 2024; 95:699-708. [PMID: 37769983 PMCID: PMC10942727 DOI: 10.1016/j.biopsych.2023.09.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 09/14/2023] [Accepted: 09/16/2023] [Indexed: 10/03/2023]
Abstract
BACKGROUND Accurate psychiatric risk assessment requires biomarkers that are both stable and adaptable to development. Functional network connectivity (FNC), which steadily reconfigures over time, potentially contains abundant information to assess psychiatric risks. However, the absence of suitable analytical methodologies has constrained this area of investigation. METHODS We investigated the brainwide risk score (BRS), a novel FNC-based metric that contrasts the relative distances of an individual's FNC to that of psychiatric disorders versus healthy control references. To generate group-level disorder and healthy control references, we utilized a large brain imaging dataset containing 5231 total individuals diagnosed with schizophrenia, autism spectrum disorder, major depressive disorder, and bipolar disorder and their corresponding healthy control individuals. The BRS metric was employed to assess the psychiatric risk in 2 new datasets: Adolescent Brain Cognitive Development (ABCD) Study (n = 8191) and Human Connectome Project Early Psychosis (n = 170). RESULTS The BRS revealed a clear, reproducible gradient of FNC patterns from low to high risk for each psychiatric disorder in unaffected adolescents. We found that low-risk ABCD Study adolescent FNC patterns for each disorder were strongly present in over 25% of the ABCD Study participants and homogeneous, whereas high-risk patterns of each psychiatric disorder were strongly present in about 1% of ABCD Study participants and heterogeneous. The BRS also showed its effectiveness in predicting psychosis scores and distinguishing individuals with early psychosis from healthy control individuals. CONCLUSIONS The BRS could be a new image-based tool for assessing psychiatric vulnerability over time and in unaffected individuals, and it could also serve as a potential biomarker, facilitating early screening and monitoring interventions.
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Affiliation(s)
- Weizheng Yan
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia; National Institute on Alcohol Abuse and Alcoholism, Laboratory of Neuroimaging, National Institutes of Health, Bethesda, Maryland.
| | - Godfrey D Pearlson
- Department of Psychiatry and Neuroscience, Yale School of Medicine, New Haven, Connecticut
| | - Zening Fu
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia
| | - Xinhui Li
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia; School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, Georgia
| | - Armin Iraji
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia
| | - Jiayu Chen
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia
| | - Jing Sui
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia; State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University, Beijing, China
| | - Nora D Volkow
- National Institute on Alcohol Abuse and Alcoholism, Laboratory of Neuroimaging, National Institutes of Health, Bethesda, Maryland
| | - Vince D Calhoun
- Tri-Institutional Center for Translational Research in Neuroimaging and Data Science, Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, Georgia.
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Puxeddu MG, Faskowitz J, Seguin C, Yovel Y, Assaf Y, Betzel R, Sporns O. Relation of connectome topology to brain volume across 103 mammalian species. PLoS Biol 2024; 22:e3002489. [PMID: 38315722 PMCID: PMC10868790 DOI: 10.1371/journal.pbio.3002489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 02/15/2024] [Accepted: 01/08/2024] [Indexed: 02/07/2024] Open
Abstract
The brain connectome is an embedded network of anatomically interconnected brain regions, and the study of its topological organization in mammals has become of paramount importance due to its role in scaffolding brain function and behavior. Unlike many other observable networks, brain connections incur material and energetic cost, and their length and density are volumetrically constrained by the skull. Thus, an open question is how differences in brain volume impact connectome topology. We address this issue using the MaMI database, a diverse set of mammalian connectomes reconstructed from 201 animals, covering 103 species and 12 taxonomy orders, whose brain size varies over more than 4 orders of magnitude. Our analyses focus on relationships between volume and modular organization. After having identified modules through a multiresolution approach, we observed how connectivity features relate to the modular structure and how these relations vary across brain volume. We found that as the brain volume increases, modules become more spatially compact and dense, comprising more costly connections. Furthermore, we investigated how spatial embedding shapes network communication, finding that as brain volume increases, nodes' distance progressively impacts communication efficiency. We identified modes of variation in network communication policies, as smaller and bigger brains show higher efficiency in routing- and diffusion-based signaling, respectively. Finally, bridging network modularity and communication, we found that in larger brains, modular structure imposes stronger constraints on network signaling. Altogether, our results show that brain volume is systematically related to mammalian connectome topology and that spatial embedding imposes tighter restrictions on larger brains.
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Affiliation(s)
- Maria Grazia Puxeddu
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, Indiana, United States of America
| | - Joshua Faskowitz
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, Indiana, United States of America
| | - Caio Seguin
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, Indiana, United States of America
| | - Yossi Yovel
- School of Neurobiology, Biochemistry and Biophysics, Tel Aviv University, Tel Aviv, Israel
| | - Yaniv Assaf
- School of Neurobiology, Biochemistry and Biophysics, Tel Aviv University, Tel Aviv, Israel
| | - Richard Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, Indiana, United States of America
- Program in Neuroscience, Indiana University, Bloomington, Indiana, United States of America
- Program in Cognitive Science, Indiana University, Bloomington, Indiana, United States of America
| | - Olaf Sporns
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, Indiana, United States of America
- Program in Neuroscience, Indiana University, Bloomington, Indiana, United States of America
- Program in Cognitive Science, Indiana University, Bloomington, Indiana, United States of America
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4
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Schulz M, Petersen M, Cheng B, Thomalla G. Association of structural connectivity with functional brain network segregation in a middle-aged to elderly population. Front Aging Neurosci 2024; 16:1291162. [PMID: 38371399 PMCID: PMC10870644 DOI: 10.3389/fnagi.2024.1291162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 01/03/2024] [Indexed: 02/20/2024] Open
Abstract
Introduction The deterioration of white matter pathways is one of the hallmarks of the ageing brain. In theory, this decrease in structural integrity leads to disconnection between regions of brain networks and thus to altered functional connectivity and a decrease in cognitive abilities. However, in many studies, associations between structural and functional connectivity are rather weak or not observed at all. System segregation, defined as the extent of partitioning between different resting state networks has increasingly gained attention in recent years as a new metric for functional changes in the aging brain. Yet there is a shortage of previous reports describing the association of structural integrity and functional segregation. Methods Therefore, we used a large a large sample of 2,657 participants from the Hamburg City Health Study, a prospective population-based study including participants aged 46-78 years from the metropolitan region Hamburg, Germany. We reconstructed structural and functional connectomes to analyze whether there is an association between age-related differences in structural connectivity and functional segregation, and whether this association is stronger than between structural connectivity and functional connectivity. In a second step, we investigated the relationship between functional segregation and executive cognitive function and tested whether this association is stronger than that between functional connectivity and executive cognitive function. Results We found a significant age-independent association between decreasing structural connectivity and decreasing functional segregation across the brain. In addition, decreasing functional segregation showed an association with decreasing executive cognitive function. On the contrary, no such association was observed between functional connectivity and structural connectivity or executive function. Discussion These results indicate that the segregation metric is a more sensitive biomarker of cognitive ageing than functional connectivity at the global level and offers a unique and more complementary network-based explanation.
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Affiliation(s)
- Maximilian Schulz
- Department of Neurology, University Medical Centre Hamburg-Eppendorf, Hamburg, Germany
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Ragone E, Tanner J, Jo Y, Zamani Esfahlani F, Faskowitz J, Pope M, Coletta L, Gozzi A, Betzel R. Modular subgraphs in large-scale connectomes underpin spontaneous co-fluctuation events in mouse and human brains. Commun Biol 2024; 7:126. [PMID: 38267534 PMCID: PMC10810083 DOI: 10.1038/s42003-024-05766-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 01/02/2024] [Indexed: 01/26/2024] Open
Abstract
Previous studies have adopted an edge-centric framework to study fine-scale network dynamics in human fMRI. To date, however, no studies have applied this framework to data collected from model organisms. Here, we analyze structural and functional imaging data from lightly anesthetized mice through an edge-centric lens. We find evidence of "bursty" dynamics and events - brief periods of high-amplitude network connectivity. Further, we show that on a per-frame basis events best explain static FC and can be divided into a series of hierarchically-related clusters. The co-fluctuation patterns associated with each cluster centroid link distinct anatomical areas and largely adhere to the boundaries of algorithmically detected functional brain systems. We then investigate the anatomical connectivity undergirding high-amplitude co-fluctuation patterns. We find that events induce modular bipartitions of the anatomical network of inter-areal axonal projections. Finally, we replicate these same findings in a human imaging dataset. In summary, this report recapitulates in a model organism many of the same phenomena observed in previously edge-centric analyses of human imaging data. However, unlike human subjects, the murine nervous system is amenable to invasive experimental perturbations. Thus, this study sets the stage for future investigation into the causal origins of fine-scale brain dynamics and high-amplitude co-fluctuations. Moreover, the cross-species consistency of the reported findings enhances the likelihood of future translation.
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Affiliation(s)
| | - Jacob Tanner
- Cognitive Science Program, Indiana University, Bloomington, IN, 47401, USA
- School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, 47401, USA
| | - Youngheun Jo
- Department of Psychological and Brain Sciences and Cognitive Science Program, Indiana University, Bloomington, IN, 47401, USA
| | - Farnaz Zamani Esfahlani
- Stephenson School of Biomedical Engineering, The University of Oklahoma, Norman, OK, 73019, USA
| | - Joshua Faskowitz
- Department of Psychological and Brain Sciences and Cognitive Science Program, Indiana University, Bloomington, IN, 47401, USA
| | - Maria Pope
- School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, 47401, USA
- Program in Neuroscience, Indiana University, Bloomington, IN, 47401, USA
| | | | - Alessandro Gozzi
- Functional Neuroimaging Lab, Istituto Italiano di Tecnologia, Center for Neuroscience and Cognitive Systems, Rovereto, Italy
| | - Richard Betzel
- Cognitive Science Program, Indiana University, Bloomington, IN, 47401, USA.
- Department of Psychological and Brain Sciences and Cognitive Science Program, Indiana University, Bloomington, IN, 47401, USA.
- Program in Neuroscience, Indiana University, Bloomington, IN, 47401, USA.
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Liu M, Zhang J, Wang Y, Zhou Y, Xie F, Guo Q, Shi F, Zhang H, Wang Q, Shen D. A common spectrum underlying brain disorders across lifespan revealed by deep learning on brain networks. iScience 2023; 26:108244. [PMID: 38026184 PMCID: PMC10651682 DOI: 10.1016/j.isci.2023.108244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 09/26/2023] [Accepted: 10/16/2023] [Indexed: 12/01/2023] Open
Abstract
Brain disorders in the early and late life of humans potentially share pathological alterations in brain functions. However, the key neuroimaging evidence remains unrevealed for elucidating such commonness and the relationships among these disorders. To explore this puzzle, we build a restricted single-branch deep learning model, using multi-site functional magnetic resonance imaging data (N = 4,410, 6 sites), for classifying 5 different early- and late-life brain disorders from healthy controls (cognitively unimpaired). Our model achieves 62.6 ± 1.9% overall classification accuracy and thus supports us in detecting a set of commonly affected functional subnetworks, including default mode, executive control, visual, and limbic networks. In the deep-layer representation of data, we observe young and aging patients with disorders are continuously distributed, which is in line with the clinical concept of the "spectrum of disorders." The relationships among brain disorders from the revealed spectrum promote the understanding of disorder comorbidities and time associations in the lifespan.
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Affiliation(s)
- Mianxin Liu
- School of Biomedical Engineering, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
- Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China
| | - Jingyang Zhang
- School of Biomedical Engineering, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Yao Wang
- Department of Radiology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China
| | - Yan Zhou
- Department of Radiology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China
| | - Fang Xie
- PET Center, Huashan Hospital, Fudan University, Shanghai 200040, China
| | - Qihao Guo
- Department of Gerontology, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai 200233, China
| | - Feng Shi
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd, Shanghai 200232, China
| | - Han Zhang
- School of Biomedical Engineering, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Qian Wang
- School of Biomedical Engineering, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
| | - Dinggang Shen
- School of Biomedical Engineering, State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, Shanghai 201210, China
- Department of Research and Development, Shanghai United Imaging Intelligence Co., Ltd, Shanghai 200232, China
- Shanghai Clinical Research and Trial Center, Shanghai 201210, China
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7
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Şapcı AOB, Lu S, Yan S, Ay F, Tastan O, Keleş S. MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing. Bioinformatics 2023; 39:btad592. [PMID: 37740957 PMCID: PMC10564618 DOI: 10.1093/bioinformatics/btad592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 08/24/2023] [Accepted: 09/21/2023] [Indexed: 09/25/2023] Open
Abstract
MOTIVATION With the wide availability of single-cell RNA-seq (scRNA-seq) technology, population-scale scRNA-seq datasets across multiple individuals and time points are emerging. While the initial investigations of these datasets tend to focus on standard analysis of clustering and differential expression, leveraging the power of scRNA-seq data at the personalized dynamic gene co-expression network level has the potential to unlock subject and/or time-specific network-level variation, which is critical for understanding phenotypic differences. Community detection from co-expression networks of multiple time points or conditions has been well-studied; however, none of the existing settings included networks from multiple subjects and multiple time points simultaneously. To address this, we develop Multi-subject Dynamic Community Detection (MuDCoD) for multi-subject community detection in personalized dynamic gene networks from scRNA-seq. MuDCoD builds on the spectral clustering framework and promotes information sharing among the networks of the subjects as well as networks at different time points. It clusters genes in the personalized dynamic gene networks and reveals gene communities that are variable or shared not only across time but also among subjects. RESULTS Evaluation and benchmarking of MuDCoD against existing approaches reveal that MuDCoD effectively leverages apparent shared signals among networks of the subjects at individual time points, and performs robustly when there is no or little information sharing among the networks. Applications to population-scale scRNA-seq datasets of human-induced pluripotent stem cells during dopaminergic neuron differentiation and CD4+ T cell activation indicate that MuDCoD enables robust inference for identifying time-varying personalized gene modules. Our results illustrate how personalized dynamic community detection can aid in the exploration of subject-specific biological processes that vary across time. AVAILABILITY AND IMPLEMENTATION MuDCoD is publicly available at https://github.com/bo1929/MuDCoD as a Python package. Implementation includes simulation and real-data experiments together with extensive documentation.
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Affiliation(s)
- Ali Osman Berk Şapcı
- Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA 92093, United States
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
| | - Shan Lu
- Department of Statistics, University of Wisconsin-Madison, Madison, WI 53706, United States
| | - Shuchen Yan
- Department of Statistics, University of Wisconsin-Madison, Madison, WI 53706, United States
| | - Ferhat Ay
- Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, United States
- Centers for Autoimmunity, Inflammation and Cancer Immunotherapy, La Jolla Institute for Immunology, La Jolla, CA 92037, United States
| | - Oznur Tastan
- Faculty of Engineering and Natural Sciences, Sabancı University, Istanbul 34956, Turkey
| | - Sündüz Keleş
- Department of Statistics, University of Wisconsin-Madison, Madison, WI 53706, United States
- Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, United States
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Jordan T, Apostol MR, Nomi J, Petersen N. Unraveling Neural Complexity: Exploring Brain Entropy to Yield Mechanistic Insight in Neuromodulation Therapies for Tobacco Use Disorder. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.12.557465. [PMID: 37745351 PMCID: PMC10515846 DOI: 10.1101/2023.09.12.557465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Neuromodulation therapies, such as repetitive transcranial magnetic stimulation (rTMS), have shown promise as treatments for tobacco use disorder (TUD). However, the underlying mechanisms of these therapies remain unclear, which may hamper optimization and personalization efforts. In this study, we investigated alteration of brain entropy as a potential mechanism underlying the neural effects of noninvasive brain stimulation by rTMS in people with TUD. We employed sample entropy (SampEn) to quantify the complexity and predictability of brain activity measured using resting-state fMRI data. Our study design included a randomized single-blind study with 42 participants who underwent 2 data collection sessions. During each session, participants received high-frequency (10Hz) stimulation to the dorsolateral prefrontal cortex (dlPFC) or a control region (visual cortex), and resting-state fMRI scans were acquired before and after rTMS. Our findings revealed that individuals who smoke exhibited higher baseline SampEn throughout the brain as compared to previously-published SampEn measurements in control participants. Furthermore, high-frequency rTMS to the dlPFC but not the control region reduced SampEn in the insula and dlPFC, regions implicated in TUD, and also reduced self-reported cigarette craving. These results suggest that brain entropy may serve as a potential biomarker for effects of rTMS, and provide insight into the neural mechanisms underlying rTMS effects on smoking cessation. Our study contributes to the growing understanding of brain-based interventions for TUD by highlighting the relevance of brain entropy in characterizing neural activity patterns associated with smoking. The observed reductions in entropy following dlPFC-targeted rTMS suggest a potential mechanism for the therapeutic effects of this intervention. These findings support the use of neuroimaging techniques to investigate the use of neuromodulation therapies for TUD.
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Affiliation(s)
- Timothy Jordan
- Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles CA
| | - Michael R. Apostol
- Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles CA
| | - Jason Nomi
- Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles CA
| | - Nicole Petersen
- Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, UCLA, Los Angeles CA
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Yan X, Kong R, Xue A, Yang Q, Orban C, An L, Holmes AJ, Qian X, Chen J, Zuo XN, Zhou JH, Fortier MV, Tan AP, Gluckman P, Chong YS, Meaney MJ, Bzdok D, Eickhoff SB, Yeo BTT. Homotopic local-global parcellation of the human cerebral cortex from resting-state functional connectivity. Neuroimage 2023; 273:120010. [PMID: 36918136 PMCID: PMC10212507 DOI: 10.1016/j.neuroimage.2023.120010] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 02/25/2023] [Accepted: 03/08/2023] [Indexed: 03/13/2023] Open
Abstract
Resting-state fMRI is commonly used to derive brain parcellations, which are widely used for dimensionality reduction and interpreting human neuroscience studies. We previously developed a model that integrates local and global approaches for estimating areal-level cortical parcellations. The resulting local-global parcellations are often referred to as the Schaefer parcellations. However, the lack of homotopic correspondence between left and right Schaefer parcels has limited their use for brain lateralization studies. Here, we extend our previous model to derive homotopic areal-level parcellations. Using resting-fMRI and task-fMRI across diverse scanners, acquisition protocols, preprocessing and demographics, we show that the resulting homotopic parcellations are as homogeneous as the Schaefer parcellations, while being more homogeneous than five publicly available parcellations. Furthermore, weaker correlations between homotopic parcels are associated with greater lateralization in resting network organization, as well as lateralization in language and motor task activation. Finally, the homotopic parcellations agree with the boundaries of a number of cortical areas estimated from histology and visuotopic fMRI, while capturing sub-areal (e.g., somatotopic and visuotopic) features. Overall, these results suggest that the homotopic local-global parcellations represent neurobiologically meaningful subdivisions of the human cerebral cortex and will be a useful resource for future studies. Multi-resolution parcellations estimated from 1479 participants are publicly available (https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Yan2023_homotopic).
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Affiliation(s)
- Xiaoxuan Yan
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore; Integrative Sciences and Engineering Programme (ISEP), National University of Singapore, Singapore
| | - Ru Kong
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Aihuiping Xue
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Qing Yang
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Csaba Orban
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Lijun An
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Avram J Holmes
- Yale University, Departments of Psychology and Psychiatry, New Haven, CT, Unites States of America
| | - Xing Qian
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Jianzhong Chen
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore
| | - Xi-Nian Zuo
- State Key Laboratory of Cognitive Neuroscience and Learning/IDG McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; National Basic Public Science Data Center, China
| | - Juan Helen Zhou
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; Integrative Sciences and Engineering Programme (ISEP), National University of Singapore, Singapore
| | - Marielle V Fortier
- Department of Diagnostic and Interventional Imaging, KK Women's and Children's Hospital, Singapore; Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A*STAR), Singapore
| | - Ai Peng Tan
- Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A*STAR), Singapore; Department of Diagnostic Radiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Peter Gluckman
- UK Centre for Human Evolution, Adaptation and Disease, Liggins Institute, University of Auckland, Auckland, New Zealand
| | - Yap Seng Chong
- Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A*STAR), Singapore; Department of Obstetrics and Gynaecology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore
| | - Michael J Meaney
- Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A*STAR), Singapore; Department of Neurology and Neurosurgery, McGill University, Montreal, QC, Canada
| | - Danilo Bzdok
- Department of Biomedical Engineering, Montreal Neurological Institute, McGill University, Montreal, QC, Canada; Mila - Quebec AI Institute, Montreal, QC, Canada
| | - Simon B Eickhoff
- Institute for Systems Neuroscience, Medical Faculty, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany; Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany
| | - B T Thomas Yeo
- Centre for Sleep and Cognition (CSC) & Centre for Translational Magnetic Resonance Research (TMR), Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Electrical and Computer Engineering, National University of Singapore, Singapore; N.1 Institute for Health and Institute for Digital Medicine (WisDM), National University of Singapore, Singapore; Integrative Sciences and Engineering Programme (ISEP), National University of Singapore, Singapore; Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, Unites States of America.
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10
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Karaaslanli A, Ortiz-Bouza M, Munia TTK, Aviyente S. Community detection in multi-frequency EEG networks. Sci Rep 2023; 13:8114. [PMID: 37208422 DOI: 10.1038/s41598-023-35232-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 05/15/2023] [Indexed: 05/21/2023] Open
Abstract
Functional connectivity networks of the human brain are commonly studied using tools from complex network theory. Existing methods focus on functional connectivity within a single frequency band. However, it is well-known that higher order brain functions rely on the integration of information across oscillations at different frequencies. Therefore, there is a need to study these cross-frequency interactions. In this paper, we use multilayer networks to model functional connectivity across multiple frequencies, where each layer corresponds to a different frequency band. We then introduce the multilayer modularity metric to develop a multilayer community detection algorithm. The proposed approach is applied to electroencephalogram (EEG) data collected during a study of error monitoring in the human brain. The differences between the community structures within and across different frequency bands for two response types, i.e. error and correct, are studied. The results indicate that following an error response, the brain organizes itself to form communities across frequencies, in particular between theta and gamma bands while a similar cross-frequency community formation is not observed following the correct response.
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Affiliation(s)
- Abdullah Karaaslanli
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, 48824, USA.
| | - Meiby Ortiz-Bouza
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, 48824, USA
| | - Tamanna T K Munia
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, 48824, USA
| | - Selin Aviyente
- Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, 48824, USA
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11
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Désy B, Desrosiers P, Allard A. Dimension matters when modeling network communities in hyperbolic spaces. PNAS NEXUS 2023; 2:pgad136. [PMID: 37181048 PMCID: PMC10167553 DOI: 10.1093/pnasnexus/pgad136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 02/17/2023] [Accepted: 03/30/2023] [Indexed: 05/16/2023]
Abstract
Over the last decade, random hyperbolic graphs have proved successful in providing geometric explanations for many key properties of real-world networks, including strong clustering, high navigability, and heterogeneous degree distributions. These properties are ubiquitous in systems as varied as the internet, transportation, brain or epidemic networks, which are thus unified under the hyperbolic network interpretation on a surface of constant negative curvature. Although a few studies have shown that hyperbolic models can generate community structures, another salient feature observed in real networks, we argue that the current models are overlooking the choice of the latent space dimensionality that is required to adequately represent clustered networked data. We show that there is an important qualitative difference between the lowest-dimensional model and its higher-dimensional counterparts with respect to how similarity between nodes restricts connection probabilities. Since more dimensions also increase the number of nearest neighbors for angular clusters representing communities, considering only one more dimension allows us to generate more realistic and diverse community structures.
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Affiliation(s)
- Béatrice Désy
- School of Information Management, Victoria University of Wellington, Wellington 6140, New Zealand
- Antarctic Research Centre, Victoria University of Wellington, Wellington 6140, New Zealand
| | - Patrick Desrosiers
- Département de physique, de génie physique et d’optique, Université Laval, Québec, QC, Canada G1V 0A6
- Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec, QC, Canada G1V 0A6
- Centre de recherche CERVO, Québec, QC, Canada G1J 2G3
| | - Antoine Allard
- Département de physique, de génie physique et d’optique, Université Laval, Québec, QC, Canada G1V 0A6
- Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec, QC, Canada G1V 0A6
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12
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Lucas A, Cornblath EJ, Sinha N, Hadar P, Caciagli L, Keller SS, Bonilha L, Shinohara RT, Stein JM, Das S, Gleichgerrcht E, Davis KA. Resting state functional connectivity demonstrates increased segregation in bilateral temporal lobe epilepsy. Epilepsia 2023; 64:1305-1317. [PMID: 36855286 DOI: 10.1111/epi.17565] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 02/26/2023] [Accepted: 02/27/2023] [Indexed: 03/02/2023]
Abstract
OBJECTIVE Temporal lobe epilepsy (TLE) is the most common type of focal epilepsy. An increasingly identified subset of patients with TLE consists of those who show bilaterally independent temporal lobe seizures. The purpose of this study was to leverage network neuroscience to better understand the interictal whole brain network of bilateral TLE (BiTLE). METHODS In this study, using a multicenter resting state functional magnetic resonance imaging (rs-fMRI) data set, we constructed whole-brain functional networks of 19 patients with BiTLE, and compared them to those of 75 patients with unilateral TLE (UTLE). We quantified resting-state, whole-brain topological properties using metrics derived from network theory, including clustering coefficient, global efficiency, participation coefficient, and modularity. For each metric, we computed an average across all brain regions, and iterated this process across network densities. Curves of network density vs each network metric were compared between groups. Finally, we derived a combined metric, which we term the "integration-segregation axis," by combining whole-brain average clustering coefficient and global efficiency curves, and applying principal component analysis (PCA)-based dimensionality reduction. RESULTS Compared to UTLE, BiTLE had decreased global efficiency (p = .031), and decreased whole brain average participation coefficient across a range of network densities (p = .019). Modularity maximization yielded a larger number of smaller communities in BiTLE than in UTLE (p = .020). Differences in network properties separate BiTLE and UTLE along the integration-segregation axis, with regions within the axis having a specificity of up to 0.87 for BiTLE. Along the integration-segregation axis, UTLE patients with poor surgical outcomes were distributed in the same regions as BiTLE, and network metrics confirmed similar patterns of increased segregation in both BiTLE and poor outcome UTLE. SIGNIFICANCE Increased interictal whole-brain network segregation, as measured by rs-fMRI, is specific to BiTLE, as well as poor surgical outcome UTLE, and may assist in non-invasively identifying this patient population prior to intracranial electroencephalography or device implantation.
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Affiliation(s)
- Alfredo Lucas
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Eli J Cornblath
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Nishant Sinha
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Peter Hadar
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Lorenzo Caciagli
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Simon S Keller
- Department of Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, UK
| | - Leonardo Bonilha
- Department of Neurology, Emory University, Atlanta, Georgia, USA
| | - Russell T Shinohara
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Joel M Stein
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Radiology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Sandhitsu Das
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Ezequiel Gleichgerrcht
- Department of Neurology, Medical University of South Carolina, Charleston, South Carolina, USA
| | - Kathryn A Davis
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
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13
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Ranieri A, Pichiorri F, Colamarino E, de Seta V, Mattia D, Toppi J. Parallel Factorization to Implement Group Analysis in Brain Networks Estimation. SENSORS (BASEL, SWITZERLAND) 2023; 23:1693. [PMID: 36772731 PMCID: PMC9920099 DOI: 10.3390/s23031693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/20/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
When dealing with complex functional brain networks, group analysis still represents an open issue. In this paper, we investigated the potential of an innovative approach based on PARAllel FActorization (PARAFAC) for the extraction of the grand average connectivity matrices from both simulated and real datasets. The PARAFAC approach was solved using three different numbers of rank-one tensors (PAR-FACT). Synthetic data were parametrized according to different levels of three parameters: network dimension (NODES), number of observations (SAMPLE-SIZE), and noise (SWAP-CON) in order to investigate the way they affect the grand average estimation. PARAFAC was then tested on a real connectivity dataset, derived from EEG data of 17 healthy subjects performing wrist extension with left and right hand separately. Findings on both synthetic and real data revealed the potential of the PARAFAC algorithm as a useful tool for grand average extraction. As expected, the best performances in terms of FPR, FNR, and AUC were achieved for great values of sample size and low noise level. A crucial role has been revealed for the PAR-FACT parameter, revealing that an increase in the number of rank-one tensors solving the PARAFAC problem leads to an increase in FPR values and, thus, to a worse grand average estimation.
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Affiliation(s)
- Andrea Ranieri
- Department of Computer, Control and Management Engineering, Sapienza University of Rome, Via Ariosto, 25, 00185 Rome, Italy
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Floriana Pichiorri
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Emma Colamarino
- Department of Computer, Control and Management Engineering, Sapienza University of Rome, Via Ariosto, 25, 00185 Rome, Italy
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Valeria de Seta
- Department of Computer, Control and Management Engineering, Sapienza University of Rome, Via Ariosto, 25, 00185 Rome, Italy
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Donatella Mattia
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
| | - Jlenia Toppi
- Department of Computer, Control and Management Engineering, Sapienza University of Rome, Via Ariosto, 25, 00185 Rome, Italy
- Neuroelectrical Imaging and Brain Computer Interface Lab, IRCCS Fondazione Santa Lucia, 00179 Rome, Italy
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14
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Howlett-Prieto Q, Oommen C, Carrithers MD, Wunsch DC, Hier DB. Subtypes of relapsing-remitting multiple sclerosis identified by network analysis. Front Digit Health 2023; 4:1063264. [PMID: 36714613 PMCID: PMC9874946 DOI: 10.3389/fdgth.2022.1063264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 12/22/2022] [Indexed: 01/12/2023] Open
Abstract
We used network analysis to identify subtypes of relapsing-remitting multiple sclerosis subjects based on their cumulative signs and symptoms. The electronic medical records of 113 subjects with relapsing-remitting multiple sclerosis were reviewed, signs and symptoms were mapped to classes in a neuro-ontology, and classes were collapsed into sixteen superclasses by subsumption. After normalization and vectorization of the data, bipartite (subject-feature) and unipartite (subject-subject) network graphs were created using NetworkX and visualized in Gephi. Degree and weighted degree were calculated for each node. Graphs were partitioned into communities using the modularity score. Feature maps visualized differences in features by community. Network analysis of the unipartite graph yielded a higher modularity score (0.49) than the bipartite graph (0.25). The bipartite network was partitioned into five communities which were named fatigue, behavioral, hypertonia/weakness, abnormal gait/sphincter, and sensory, based on feature characteristics. The unipartite network was partitioned into five communities which were named fatigue, pain, cognitive, sensory, and gait/weakness/hypertonia based on features. Although we did not identify pure subtypes (e.g., pure motor, pure sensory, etc.) in this cohort of multiple sclerosis subjects, we demonstrated that network analysis could partition these subjects into different subtype communities. Larger datasets and additional partitioning algorithms are needed to confirm these findings and elucidate their significance. This study contributes to the literature investigating subtypes of multiple sclerosis by combining feature reduction by subsumption with network analysis.
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Affiliation(s)
- Quentin Howlett-Prieto
- Department of Neurology and Rehabilitation, University of Illinois at Chicago, Chicago, IL, United States
| | - Chelsea Oommen
- Department of Neurology and Rehabilitation, University of Illinois at Chicago, Chicago, IL, United States
| | - Michael D. Carrithers
- Department of Neurology and Rehabilitation, University of Illinois at Chicago, Chicago, IL, United States
| | - Donald C. Wunsch
- Department of Electrical and Computer Engineering, Missouri University of Science and Technology, Rolla, MO, United States
| | - Daniel B. Hier
- Department of Neurology and Rehabilitation, University of Illinois at Chicago, Chicago, IL, United States,Department of Electrical and Computer Engineering, Missouri University of Science and Technology, Rolla, MO, United States,Correspondence: Daniel B. Hier
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15
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Gray JP, Manuello J, Alexander-Bloch AF, Leonardo C, Franklin C, Choi KS, Cauda F, Costa T, Blangero J, Glahn DC, Mayberg HS, Fox PT. Co-alteration Network Architecture of Major Depressive Disorder: A Multi-modal Neuroimaging Assessment of Large-scale Disease Effects. Neuroinformatics 2022; 21:443-455. [PMID: 36469193 DOI: 10.1007/s12021-022-09614-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/06/2022] [Indexed: 12/12/2022]
Abstract
Major depressive disorder (MDD) exhibits diverse symptomology and neuroimaging studies report widespread disruption of key brain areas. Numerous theories underpinning the network degeneration hypothesis (NDH) posit that neuropsychiatric diseases selectively target brain areas via meaningful network mechanisms rather than as indistinct disease effects. The present study tests the hypothesis that MDD is a network-based disorder, both structurally and functionally. Coordinate-based meta-analysis and Activation Likelihood Estimation (CBMA-ALE) were used to assess the convergence of findings from 92 previously published studies in depression. An extension of CBMA-ALE was then used to generate a node-and-edge network model representing the co-alteration of brain areas impacted by MDD. Standardized measures of graph theoretical network architecture were assessed. Co-alteration patterns among the meta-analytic MDD nodes were then tested in independent, clinical T1-weighted structural magnetic resonance imaging (MRI) and resting-state functional (rs-fMRI) data. Differences in co-alteration profiles between MDD patients and healthy controls, as well as between controls and clinical subgroups of MDD patients, were assessed. A 65-node 144-edge co-alteration network model was derived for MDD. Testing of co-alteration profiles in replication data using the MDD nodes provided distinction between MDD and healthy controls in structural data. However, co-alteration profiles were not distinguished between patients and controls in rs-fMRI data. Improved distinction between patients and healthy controls was observed in clinically homogenous MDD subgroups in T1 data. MDD abnormalities demonstrated both structural and functional network architecture, though only structural networks exhibited between-groups differences. Our findings suggest improved utility of structural co-alteration networks for ongoing biomarker development.
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16
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Puxeddu MG, Faskowitz J, Sporns O, Astolfi L, Betzel RF. Multi-modal and multi-subject modular organization of human brain networks. Neuroimage 2022; 264:119673. [PMID: 36257489 DOI: 10.1016/j.neuroimage.2022.119673] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 09/22/2022] [Accepted: 10/05/2022] [Indexed: 11/06/2022] Open
Abstract
The human brain is a complex network of anatomically interconnected brain areas. Spontaneous neural activity is constrained by this architecture, giving rise to patterns of statistical dependencies between the activity of remote neural elements. The non-trivial relationship between structural and functional connectivity poses many unsolved challenges about cognition, disease, development, learning and aging. While numerous studies have focused on statistical relationships between edge weights in anatomical and functional networks, less is known about dependencies between their modules and communities. In this work, we investigate and characterize the relationship between anatomical and functional modular organization of the human brain, developing a novel multi-layer framework that expands the classical concept of multi-layer modularity. By simultaneously mapping anatomical and functional networks estimated from different subjects into communities, this approach allows us to carry out a multi-subject and multi-modal analysis of the brain's modular organization. Here, we investigate the relationship between anatomical and functional modules during resting state, finding unique and shared structures. The proposed framework constitutes a methodological advance in the context of multi-layer network analysis and paves the way to further investigate the relationship between structural and functional network organization in clinical cohorts, during cognitively demanding tasks, and in developmental or lifespan studies.
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Affiliation(s)
- Maria Grazia Puxeddu
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405
| | - Joshua Faskowitz
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405; Program in Neuroscience, Indiana University, Bloomington, IN 47405
| | - Olaf Sporns
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405; Cognitive Science Program, Indiana University, Bloomington, IN 47405; Program in Neuroscience, Indiana University, Bloomington, IN 47405; Network Science Institute, Indiana University, Bloomington, IN 47405
| | - Laura Astolfi
- Department of Computer, Control and Management Engineering, University of Rome La Sapienza, Rome, 00185, Italy; IRCCS, Fondazione Santa Lucia, Rome, 00142, Italy
| | - Richard F Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405; Cognitive Science Program, Indiana University, Bloomington, IN 47405; Program in Neuroscience, Indiana University, Bloomington, IN 47405; Network Science Institute, Indiana University, Bloomington, IN 47405.
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17
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Farahani FV, Karwowski W, D’Esposito M, Betzel RF, Douglas PK, Sobczak AM, Bohaterewicz B, Marek T, Fafrowicz M. Diurnal variations of resting-state fMRI data: A graph-based analysis. Neuroimage 2022; 256:119246. [PMID: 35477020 PMCID: PMC9799965 DOI: 10.1016/j.neuroimage.2022.119246] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 02/18/2022] [Accepted: 04/22/2022] [Indexed: 12/31/2022] Open
Abstract
Circadian rhythms (lasting approximately 24 h) control and entrain various physiological processes, ranging from neural activity and hormone secretion to sleep cycles and eating habits. Several studies have shown that time of day (TOD) is associated with human cognition and brain functions. In this study, utilizing a chronotype-based paradigm, we applied a graph theory approach on resting-state functional MRI (rs-fMRI) data to compare whole-brain functional network topology between morning and evening sessions and between morning-type (MT) and evening-type (ET) participants. Sixty-two individuals (31 MT and 31 ET) underwent two fMRI sessions, approximately 1 hour (morning) and 10 h (evening) after their wake-up time, according to their declared habitual sleep-wake pattern on a regular working day. In the global analysis, the findings revealed the effect of TOD on functional connectivity (FC) patterns, including increased small-worldness, assortativity, and synchronization across the day. However, we identified no significant differences based on chronotype categories. The study of the modular structure of the brain at mesoscale showed that functional networks tended to be more integrated with one another in the evening session than in the morning session. Local/regional changes were affected by both factors (i.e., TOD and chronotype), mostly in areas associated with somatomotor, attention, frontoparietal, and default networks. Furthermore, connectivity and hub analyses revealed that the somatomotor, ventral attention, and visual networks covered the most highly connected areas in the morning and evening sessions: the latter two were more active in the morning sessions, and the first was identified as being more active in the evening. Finally, we performed a correlation analysis to determine whether global and nodal measures were associated with subjective assessments across participants. Collectively, these findings contribute to an increased understanding of diurnal fluctuations in resting brain activity and highlight the role of TOD in future studies on brain function and the design of fMRI experiments.
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Affiliation(s)
- Farzad V. Farahani
- Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA,Computational Neuroergonomics Laboratory, Department of Industrial Engineering and Management Systems, University of Central Florida, Orlando, FL, USA,Corresponding author: Department of Biostatistics, Johns Hopkins University, Baltimore, MD, USA. (F.V. Farahani)
| | - Waldemar Karwowski
- Computational Neuroergonomics Laboratory, Department of Industrial Engineering and Management Systems, University of Central Florida, Orlando, FL, USA
| | - Mark D’Esposito
- Helen Wills Neuroscience Institute, University of California, Berkeley, CA, USA,Department of Psychology, University of California, Berkeley, CA, USA
| | - Richard F. Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, USA
| | - Pamela K. Douglas
- Institute for Simulation and Training, University of Central Florida, Orlando, FL, USA,Department of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, Los Angeles, CA, USA
| | - Anna Maria Sobczak
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Krakow, Poland
| | - Bartosz Bohaterewicz
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Krakow, Poland,Department of Psychology of Individual Differences, Psychological Diagnosis, and Psychometrics, Institute of Psychology, University of Social Sciences and Humanities, Warsaw, Poland
| | - Tadeusz Marek
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Krakow, Poland
| | - Magdalena Fafrowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Krakow, Poland,Malopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland,Corresponding author. Department of Cognitive Neuroscience and Neuroergonomics, Institute of Applied Psychology, Jagiellonian University, Krakow, Poland. (M. Fafrowicz)
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18
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Casas-Roma J, Martinez-Heras E, Solé-Ribalta A, Solana E, Lopez-Soley E, Vivó F, Diaz-Hurtado M, Alba-Arbalat S, Sepulveda M, Blanco Y, Saiz A, Borge-Holthoefer J, Llufriu S, Prados F. Applying multilayer analysis to morphological, structural, and functional brain networks to identify relevant dysfunction patterns. Netw Neurosci 2022; 6:916-933. [PMID: 36605412 PMCID: PMC9810367 DOI: 10.1162/netn_a_00258] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 06/07/2022] [Indexed: 01/09/2023] Open
Abstract
In recent years, research on network analysis applied to MRI data has advanced significantly. However, the majority of the studies are limited to single networks obtained from resting-state fMRI, diffusion MRI, or gray matter probability maps derived from T1 images. Although a limited number of previous studies have combined two of these networks, none have introduced a framework to combine morphological, structural, and functional brain connectivity networks. The aim of this study was to combine the morphological, structural, and functional information, thus defining a new multilayer network perspective. This has proved advantageous when jointly analyzing multiple types of relational data from the same objects simultaneously using graph- mining techniques. The main contribution of this research is the design, development, and validation of a framework that merges these three layers of information into one multilayer network that links and relates the integrity of white matter connections with gray matter probability maps and resting-state fMRI. To validate our framework, several metrics from graph theory are expanded and adapted to our specific domain characteristics. This proof of concept was applied to a cohort of people with multiple sclerosis, and results show that several brain regions with a synchronized connectivity deterioration could be identified.
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Affiliation(s)
- Jordi Casas-Roma
- e-Health Center, Universitat Oberta de Catalunya, Barcelona, Spain,* Corresponding Author:
| | - Eloy Martinez-Heras
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | | | - Elisabeth Solana
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Elisabet Lopez-Soley
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Francesc Vivó
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | | | - Salut Alba-Arbalat
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Maria Sepulveda
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Yolanda Blanco
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Albert Saiz
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | | | - Sara Llufriu
- Center of Neuroimmunology, Laboratory of Advanced Imaging in Neuroimmunological Diseases (ImaginEM), Hospital Clínic de Barcelona, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Universitat de Barcelona, Barcelona, Spain
| | - Ferran Prados
- e-Health Center, Universitat Oberta de Catalunya, Barcelona, Spain,Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom,Queen Square MS Centre, Department of Neuroinflammation, UCL Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom
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19
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Shi M, Qu B, Li X, Li C. Network Representation Learning With Community Awareness and Its Applications in Brain Networks. Front Physiol 2022; 13:910873. [PMID: 35711311 PMCID: PMC9196130 DOI: 10.3389/fphys.2022.910873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Accepted: 04/29/2022] [Indexed: 12/02/2022] Open
Abstract
Previously network representation learning methods mainly focus on exploring the microscopic structure, i.e., the pairwise relationship or similarity between nodes. However, the mesoscopic structure, i.e., community structure, an essential property in real networks, has not been thoroughly studied in the network representation learning. We here propose a deep attributed network representation learning with community awareness (DANRL-CA) framework. Specifically, we design a neighborhood enhancement autoencoder module to capture the 2-step relations between node pairs. To explore the multi-step relations, we construct a community-aware skip-gram module based on the encoder. We introduce two variants of DANRL-CA, namely, DANRL-CA-AM and DANRL-CA-CSM, which incorporate the community information and attribute semantics into node neighbors with different methods. We compare two variant models with the state-of-the-art methods on four datasets for node classification and link prediction. Especially, we apply our models on a brain network. The superiority indicates the scalability and effectiveness of our method on various networks. Compared with DANRL-CA-AM, DANRL-CA-CSM can more flexibly coordinate the role of node attributes and community information in the process of network representation learning, and shows superiority in the networks with sparse topological structure and node attributes.
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Affiliation(s)
- Min Shi
- Adaptive Networks and Control Lab, Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai, China
| | - Bo Qu
- Peng Cheng Laboratory, Shenzhen, China
| | - Xiang Li
- the Institute of Complex Networks and Intelligent Systems, Shanghai Research Institute for Intelligent Autonomous Systems, Tongji University, Shanghai, China
| | - Cong Li
- Adaptive Networks and Control Lab, Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai, China
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20
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Seguin C, Mansour L S, Sporns O, Zalesky A, Calamante F. Network communication models narrow the gap between the modular organization of structural and functional brain networks. Neuroimage 2022; 257:119323. [PMID: 35605765 DOI: 10.1016/j.neuroimage.2022.119323] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 04/25/2022] [Accepted: 05/17/2022] [Indexed: 11/28/2022] Open
Abstract
Structural and functional brain networks are modular. Canonical functional systems, such as the default mode network, are well-known modules of the human brain and have been implicated in a large number of cognitive, behavioral and clinical processes. However, modules delineated in structural brain networks inferred from tractography generally do not recapitulate canonical functional systems. Neuroimaging evidence suggests that functional connectivity between regions in the same systems is not always underpinned by anatomical connections. As such, direct structural connectivity alone would be insufficient to characterize the functional modular organization of the brain. Here, we demonstrate that augmenting structural brain networks with models of indirect (polysynaptic) communication unveils a modular network architecture that more closely resembles the brain's established functional systems. We find that diffusion models of polysynaptic connectivity, particularly communicability, narrow the gap between the modular organization of structural and functional brain networks by 20-60%, whereas routing models based on single efficient paths do not improve mesoscopic structure-function correspondence. This suggests that functional modules emerge from the constraints imposed by local network structure that facilitates diffusive neural communication. Our work establishes the importance of modeling polysynaptic communication to understand the structural basis of functional systems.
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Affiliation(s)
- Caio Seguin
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; The University of Sydney, School of Biomedical Engineering, Sydney, NSW, Australia; Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, United States.
| | - Sina Mansour L
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; Department of Biomedical Engineering, Melbourne School of Engineering, The University of Melbourne, Melbourne, VIC, Australia
| | - Olaf Sporns
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, United States; Cognitive Science Program, Indiana University, Bloomington, IN, United States; Program in Neuroscience, Indiana University, Bloomington, IN, United States; Network Science Institute, Indiana University, Bloomington, IN, United States
| | - Andrew Zalesky
- Melbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC, Australia; Department of Biomedical Engineering, Melbourne School of Engineering, The University of Melbourne, Melbourne, VIC, Australia
| | - Fernando Calamante
- The University of Sydney, School of Biomedical Engineering, Sydney, NSW, Australia; Brain and Mind Centre, The University of Sydney, Sydney, NSW, Australia; Sydney Imaging, The University of Sydney, Sydney, NSW, Australia
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21
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Di Plinio S, Ebisch SJH. Probabilistically Weighted Multilayer Networks disclose the link between default mode network instability and psychosis-like experiences in healthy adults. Neuroimage 2022; 257:119291. [PMID: 35577023 DOI: 10.1016/j.neuroimage.2022.119291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 05/01/2022] [Accepted: 05/04/2022] [Indexed: 11/30/2022] Open
Abstract
The brain is a complex system in which the functional interactions among its subunits vary over time. The trajectories of this dynamic variation contribute to inter-individual behavioral differences and psychopathologic phenotypes. Despite many methodological advancements, the study of dynamic brain networks still relies on biased assumptions in the temporal domain. The current paper has two goals. First, we present a novel method to study multilayer networks: by modelling intra-nodal connections in a probabilistic, biologically driven way, we introduce a temporal resolution of the multilayer network based on signal similarity across time series. This new method is tested on synthetic networks by varying the number of modules and the sources of noise in the simulation. Secondly, we implement these probabilistically weighted (PW) multilayer networks to study the association between network dynamics and subclinical, psychosis-relevant personality traits in healthy adults. We show that the PW method for multilayer networks outperforms the standard procedure in modular detection and is less affected by increasing noise levels. Additionally, the PW method highlighted associations between the temporal instability of default mode network connections and psychosis-like experiences in healthy adults. PW multilayer networks allow an unbiased study of dynamic brain functioning and its behavioral correlates.
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Affiliation(s)
- Simone Di Plinio
- Department of Neuroscience, Imaging, and Clinical Sciences, G D'Annunzio University of Chieti-Pescara, Chieti, Italy.
| | - Sjoerd J H Ebisch
- Department of Neuroscience, Imaging, and Clinical Sciences, G D'Annunzio University of Chieti-Pescara, Chieti, Italy; Institute for Advanced Biomedical Technologies (ITAB), G D'Annunzio University of Chieti-Pescara, Chieti, Italy
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22
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Pines AR, Larsen B, Cui Z, Sydnor VJ, Bertolero MA, Adebimpe A, Alexander-Bloch AF, Davatzikos C, Fair DA, Gur RC, Gur RE, Li H, Milham MP, Moore TM, Murtha K, Parkes L, Thompson-Schill SL, Shanmugan S, Shinohara RT, Weinstein SM, Bassett DS, Fan Y, Satterthwaite TD. Dissociable multi-scale patterns of development in personalized brain networks. Nat Commun 2022; 13:2647. [PMID: 35551181 PMCID: PMC9098559 DOI: 10.1038/s41467-022-30244-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 04/21/2022] [Indexed: 11/24/2022] Open
Abstract
The brain is organized into networks at multiple resolutions, or scales, yet studies of functional network development typically focus on a single scale. Here, we derive personalized functional networks across 29 scales in a large sample of youths (n = 693, ages 8-23 years) to identify multi-scale patterns of network re-organization related to neurocognitive development. We found that developmental shifts in inter-network coupling reflect and strengthen a functional hierarchy of cortical organization. Furthermore, we observed that scale-dependent effects were present in lower-order, unimodal networks, but not higher-order, transmodal networks. Finally, we found that network maturation had clear behavioral relevance: the development of coupling in unimodal and transmodal networks are dissociably related to the emergence of executive function. These results suggest that the development of functional brain networks align with and refine a hierarchy linked to cognition.
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Affiliation(s)
- Adam R Pines
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Bart Larsen
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Zaixu Cui
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Chinese Institute for Brain Research, 102206, Beijing, China
| | - Valerie J Sydnor
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Maxwell A Bertolero
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Azeez Adebimpe
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Aaron F Alexander-Bloch
- Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Christos Davatzikos
- Department of Radiology, the University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Damien A Fair
- Department of Pediatrics, College of Education and Human Development, University of Minnesota, Minneapolis, MN, 55455, USA
| | - Ruben C Gur
- Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Radiology, the University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Neurology, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Raquel E Gur
- Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Hongming Li
- Department of Radiology, the University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Michael P Milham
- Center for Biomedical Imaging and Neuromodulation, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY, 10962, USA.,Center for the Developing Brain, Child Mind Institute, New York City, NY, USA
| | - Tyler M Moore
- Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Kristin Murtha
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Linden Parkes
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | | | - Sheila Shanmugan
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Russell T Shinohara
- Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Sarah M Weinstein
- Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Danielle S Bassett
- Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Neurology, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Electrical & Systems Engineering, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, PA, 19104, USA.,Santa Fe Institute, Santa Fe, NM, 87051, USA
| | - Yong Fan
- Department of Radiology, the University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Theodore D Satterthwaite
- The Penn Lifespan Informatics and Neuroimaging Center, University of Pennsylvania, Philadelphia, PA, 19104, USA. .,Department of Psychiatry, Neurodevelopment & Psychosis Section, University of Pennsylvania, Philadelphia, PA, 19104, USA.
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23
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Zamani Esfahlani F, Faskowitz J, Slack J, Mišić B, Betzel RF. Local structure-function relationships in human brain networks across the lifespan. Nat Commun 2022; 13:2053. [PMID: 35440659 PMCID: PMC9018911 DOI: 10.1038/s41467-022-29770-y] [Citation(s) in RCA: 48] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2021] [Accepted: 03/29/2022] [Indexed: 12/13/2022] Open
Abstract
A growing number of studies have used stylized network models of communication to predict brain function from structure. Most have focused on a small set of models applied globally. Here, we compare a large number of models at both global and regional levels. We find that globally most predictors perform poorly. At the regional level, performance improves but heterogeneously, both in terms of variance explained and the optimal model. Next, we expose synergies among predictors by using pairs to jointly predict FC. Finally, we assess age-related differences in global and regional coupling across the human lifespan. We find global decreases in the magnitude of structure-function coupling with age. We find that these decreases are driven by reduced coupling in sensorimotor regions, while higher-order cognitive systems preserve local coupling with age. Our results describe patterns of structure-function coupling across the cortex and how this may change with age.
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Affiliation(s)
- Farnaz Zamani Esfahlani
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA
| | - Joshua Faskowitz
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA
- Program in Neuroscience, Indiana University, Bloomington, IN, 47405, USA
| | - Jonah Slack
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA
| | - Bratislav Mišić
- McConnell Brain Imaging Centre, Montréal Neurological Institute, McGill University, Montréal, QC, Canada
| | - Richard F Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN, 47405, USA.
- Program in Neuroscience, Indiana University, Bloomington, IN, 47405, USA.
- Cognitive Science Program, Indiana University, Bloomington, IN, 47405, USA.
- Network Science Institute, Indiana University, Bloomington, IN, 47405, USA.
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24
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Golden subject is everyone: A subject transfer neural network for motor imagery-based brain computer interfaces. Neural Netw 2022; 151:111-120. [DOI: 10.1016/j.neunet.2022.03.025] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 02/09/2022] [Accepted: 03/22/2022] [Indexed: 12/24/2022]
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25
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Chiêm B, Abbas K, Amico E, Duong-Tran DA, Crevecoeur F, Goñi J. Improving Functional Connectome Fingerprinting with Degree-Normalization. Brain Connect 2022; 12:180-192. [PMID: 34015966 PMCID: PMC8978572 DOI: 10.1089/brain.2020.0968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Background: Functional connectivity quantifies the statistical dependencies between the activity of brain regions, measured using neuroimaging data such as functional magnetic resonance imaging (fMRI) blood-oxygenation-level dependent time series. The network representation of functional connectivity, called a functional connectome (FC), has been shown to contain an individual fingerprint allowing participants identification across consecutive testing sessions. Recently, researchers have focused on the extraction of these fingerprints, with potential applications in personalized medicine. Materials and Methods: In this study, we show that a mathematical operation denominated degree-normalization can improve the extraction of FC fingerprints. Degree-normalization has the effect of reducing the excessive influence of strongly connected brain areas in the whole-brain network. We adopt the differential identifiability framework and apply it to both original and degree-normalized FCs of 409 individuals from the Human Connectome Project, in resting-state and 7 fMRI tasks. Results: Our results indicate that degree-normalization systematically improves three fingerprinting metrics, namely differential identifiability, identification rate, and matching rate. Moreover, the results related to the matching rate metric suggest that individual fingerprints are embedded in a low-dimensional space. Discussion: The results suggest that low-dimensional functional fingerprints lie in part in weakly connected subnetworks of the brain and that degree-normalization helps uncovering them. This work introduces a simple mathematical operation that could lead to significant improvements in future FC fingerprinting studies.
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Affiliation(s)
- Benjamin Chiêm
- Institute of Communication Technologies, Electronics and Applied Mathematics, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
- Institute of Neurosciences, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Kausar Abbas
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana, USA
- School of Industrial Engineering, Purdue University, West Lafayette, Indiana, USA
| | - Enrico Amico
- Institute of Bioengineering, Center for Neuroprosthetics, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
- Department of Radiology and Medical Informatics, University of Geneva, Geneva, Switzerland
| | - Duy Anh Duong-Tran
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana, USA
- School of Industrial Engineering, Purdue University, West Lafayette, Indiana, USA
| | - Frédéric Crevecoeur
- Institute of Communication Technologies, Electronics and Applied Mathematics, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
- Institute of Neurosciences, Université Catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Joaquín Goñi
- Purdue Institute for Integrative Neuroscience, Purdue University, West Lafayette, Indiana, USA
- School of Industrial Engineering, Purdue University, West Lafayette, Indiana, USA
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana, USA
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26
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Chen Z, Zhang R, Huo H, Liu P, Zhang C, Feng T. Functional connectome of human cerebellum. Neuroimage 2022; 251:119015. [DOI: 10.1016/j.neuroimage.2022.119015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 01/26/2022] [Accepted: 02/17/2022] [Indexed: 10/19/2022] Open
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27
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Gu S, Fotiadis P, Parkes L, Xia CH, Gur RC, Gur RE, Roalf DR, Satterthwaite TD, Bassett DS. Network controllability mediates the relationship between rigid structure and flexible dynamics. Netw Neurosci 2022; 6:275-297. [PMID: 36605890 PMCID: PMC9810281 DOI: 10.1162/netn_a_00225] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 12/15/2021] [Indexed: 01/07/2023] Open
Abstract
Precisely how the anatomical structure of the brain supports a wide range of complex functions remains a question of marked importance in both basic and clinical neuroscience. Progress has been hampered by the lack of theoretical frameworks explaining how a structural network of relatively rigid interareal connections can produce a diverse repertoire of functional neural dynamics. Here, we address this gap by positing that the brain's structural network architecture determines the set of accessible functional connectivity patterns according to predictions of network control theory. In a large developmental cohort of 823 youths aged 8 to 23 years, we found that the flexibility of a brain region's functional connectivity was positively correlated with the proportion of its structural links extending to different cognitive systems. Notably, this relationship was mediated by nodes' boundary controllability, suggesting that a region's strategic location on the boundaries of modules may underpin the capacity to integrate information across different cognitive processes. Broadly, our study provides a mechanistic framework that illustrates how temporal flexibility observed in functional networks may be mediated by the controllability of the underlying structural connectivity.
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Affiliation(s)
- Shi Gu
- Brain and Intelligence Group, School of Computer Science and Engineering, University of Electronic Science and Technology of China, Chengdu, China
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Panagiotis Fotiadis
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Linden Parkes
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Cedric H. Xia
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Ruben C. Gur
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Raquel E. Gur
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - David R. Roalf
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Theodore D. Satterthwaite
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
| | - Dani S. Bassett
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
- Department of Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, PA, USA
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA, USA
- Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Santa Fe Institute, Santa Fe, NM, USA
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28
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Zamani Esfahlani F, Jo Y, Puxeddu MG, Merritt H, Tanner JC, Greenwell S, Patel R, Faskowitz J, Betzel RF. Modularity maximization as a flexible and generic framework for brain network exploratory analysis. Neuroimage 2021; 244:118607. [PMID: 34607022 DOI: 10.1016/j.neuroimage.2021.118607] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2021] [Revised: 09/03/2021] [Accepted: 09/20/2021] [Indexed: 11/28/2022] Open
Abstract
The modular structure of brain networks supports specialized information processing, complex dynamics, and cost-efficient spatial embedding. Inter-individual variation in modular structure has been linked to differences in performance, disease, and development. There exist many data-driven methods for detecting and comparing modular structure, the most popular of which is modularity maximization. Although modularity maximization is a general framework that can be modified and reparamaterized to address domain-specific research questions, its application to neuroscientific datasets has, thus far, been narrow. Here, we highlight several strategies in which the "out-of-the-box" version of modularity maximization can be extended to address questions specific to neuroscience. First, we present approaches for detecting "space-independent" modules and for applying modularity maximization to signed matrices. Next, we show that the modularity maximization frame is well-suited for detecting task- and condition-specific modules. Finally, we highlight the role of multi-layer models in detecting and tracking modules across time, tasks, subjects, and modalities. In summary, modularity maximization is a flexible and general framework that can be adapted to detect modular structure resulting from a wide range of hypotheses. This article highlights multiple frontiers for future research and applications.
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Affiliation(s)
- Farnaz Zamani Esfahlani
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States
| | - Youngheun Jo
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States
| | - Maria Grazia Puxeddu
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States; Department of Computer, Control and Management Engineering "Antonio Ruberti", Sapienza University of Rome, Rome 00185, Italy; IRCCS Fondazione Santa Lucia, Rome 00179, Italy
| | - Haily Merritt
- Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN 47405, United States; Cognitive Science Program, Indiana University, Bloomington, IN 47405, United States
| | - Jacob C Tanner
- Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN 47405, United States; Cognitive Science Program, Indiana University, Bloomington, IN 47405, United States
| | - Sarah Greenwell
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States
| | - Riya Patel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States
| | - Joshua Faskowitz
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States; Program in Neuroscience, Indiana University, Bloomington, IN 47405, United States
| | - Richard F Betzel
- Department of Psychological and Brain Sciences, Indiana University, Bloomington, IN 47405, United States; Cognitive Science Program, Indiana University, Bloomington, IN 47405, United States; Program in Neuroscience, Indiana University, Bloomington, IN 47405, United States; Network Science Institute, Indiana University, Bloomington, IN 47405, United States.
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29
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Bian L, Cui T, Thomas Yeo BT, Fornito A, Razi A, Keith J. Identification of community structure-based brain states and transitions using functional MRI. Neuroimage 2021; 244:118635. [PMID: 34624503 PMCID: PMC8905300 DOI: 10.1016/j.neuroimage.2021.118635] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2021] [Revised: 09/29/2021] [Accepted: 10/04/2021] [Indexed: 11/14/2022] Open
Abstract
Community-based detection of discrete brain states using stochastic latent block model. Bayesian change-point detection and model selection via posterior predictive discrepancy. Markov chain Monte Carlo methods for estimation of community memberships. Distinctive brain states for varying task demands in working memory task fMRI.
Brain function relies on a precisely coordinated and dynamic balance between the functional integration and segregation of distinct networks. Characterizing the way in which brain regions reconfigure their interactions to give rise to distinct but hidden brain states remains an open challenge. In this paper, we propose a Bayesian method for characterizing community structure-based latent brain states and showcase a novel strategy based on posterior predictive discrepancy using the latent block model to detect transitions between community structures in blood oxygen level-dependent (BOLD) time series. The set of estimated parameters in the model includes a latent label vector that assigns network nodes to communities, and also block model parameters that reflect the weighted connectivity within and between communities. Besides extensive in-silico model evaluation, we also provide empirical validation (and replication) using the Human Connectome Project (HCP) dataset of 100 healthy adults. Our results obtained through an analysis of task-fMRI data during working memory performance show appropriate lags between external task demands and change-points between brain states, with distinctive community patterns distinguishing fixation, low-demand and high-demand task conditions.
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Affiliation(s)
- Lingbin Bian
- School of Mathematics, Monash University, Australia; Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Australia.
| | - Tiangang Cui
- School of Mathematics, Monash University, Australia
| | - B T Thomas Yeo
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
| | - Alex Fornito
- Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Australia; Monash Biomedical Imaging, Monash University, Australia
| | - Adeel Razi
- Turner Institute for Brain and Mental Health, School of Psychological Sciences, Monash University, Australia; Monash Biomedical Imaging, Monash University, Australia; Wellcome Centre for Human Neuroimaging, University College London, United Kingdom; CIFAR Azrieli Global Scholars Program, CIFAR, Toronto, Canada.
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30
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The diversity and multiplexity of edge communities within and between brain systems. Cell Rep 2021; 37:110032. [PMID: 34788617 DOI: 10.1016/j.celrep.2021.110032] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Revised: 09/08/2021] [Accepted: 10/28/2021] [Indexed: 11/24/2022] Open
Abstract
The human brain is composed of functionally specialized systems that support cognition. Recently, we proposed an edge-centric model for detecting overlapping communities. It remains unclear how these communities and brain systems are related. Here, we address this question using data from the Midnight Scan Club and show that all brain systems are linked via at least two edge communities. We then examine the diversity of edge communities within each system, finding that heteromodal systems are more diverse than sensory systems. Next, we cluster the entire cortex to reveal it according to the regions' edge-community profiles. We find that regions in heteromodal systems are more likely to form their own clusters. Finally, we show that edge communities are personalized. Our work reveals the pervasive overlap of edge communities across the cortex and their relationship with brain systems. Our work provides pathways for future research using edge-centric brain networks.
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Puxeddu MG, Petti M, Astolfi L. Multi-layer analysis of multi-frequency brain networks as a new tool to study EEG topological organization. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:924-927. [PMID: 34891441 DOI: 10.1109/embc46164.2021.9630173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Oscillatory activity rising from the interaction among neurons is widely observed in the brain at different scales and is thought to encode distinctive properties of the neural processing. Classical investigations of neuroelectrical activity and connectivity usually focus on specific frequency bands, considered as separate aspects of brain functioning. However, this might not paint the whole picture, preventing to see the brain activity as a whole, as the result of an integrated process. This study aims to provide a new framework for the analysis of the functional interaction between brain regions across frequencies and different subjects. We ground our work on the latest advances in graph theory, exploiting multi-layer community detection. In our multi-layer network model, layers keep track of single frequencies, including all the information in a unique graph. Community detection is then applied by means of a multilayer formulation of modularity. As a proof-of-concept of our approach, we provide here an application to multi-frequency functional brain networks derived from resting state EEG collected in a group of healthy subjects. Our results indicate that α-band selectively characterizes an inter-individual common organization of EEG brain networks during open eyes resting state. Future applications of this new approach may include the extraction of subject-specific features able to capture selected properties of the brain processes, related to physiological or pathological conditions.
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Rezaei Z, Jafari Z, Afrashteh N, Torabi R, Singh S, Kolb BE, Davidsen J, Mohajerani MH. Prenatal stress dysregulates resting-state functional connectivity and sensory motifs. Neurobiol Stress 2021; 15:100345. [PMID: 34124321 PMCID: PMC8173309 DOI: 10.1016/j.ynstr.2021.100345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 05/16/2021] [Accepted: 05/17/2021] [Indexed: 11/24/2022] Open
Abstract
Prenatal stress (PS) can impact fetal brain structure and function and contribute to higher vulnerability to neurodevelopmental and neuropsychiatric disorders. To understand how PS alters evoked and spontaneous neocortical activity and intrinsic brain functional connectivity, mesoscale voltage imaging was performed in adult C57BL/6NJ mice that had been exposed to auditory stress on gestational days 12-16, the age at which neocortex is developing. PS mice had a four-fold higher basal corticosterone level and reduced amplitude of cortical sensory-evoked responses to visual, auditory, whisker, forelimb, and hindlimb stimuli. Relative to control animals, PS led to a general reduction of resting-state functional connectivity, as well as reduced inter-modular connectivity, enhanced intra-modular connectivity, and altered frequency of auditory and forelimb spontaneous sensory motifs. These resting-state changes resulted in a cortical connectivity pattern featuring disjoint but tight modules and a decline in network efficiency. The findings demonstrate that cortical connectivity is sensitive to PS and exposed offspring may be at risk for adult stress-related neuropsychiatric disorders.
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Affiliation(s)
- Zahra Rezaei
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Zahra Jafari
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Navvab Afrashteh
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Reza Torabi
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Surjeet Singh
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Bryan E. Kolb
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
| | - Jörn Davidsen
- Complexity Science Group, Department of Physics and Astronomy, Faculty of Science, University of Calgary, Calgary, AB, Canada, T2N 1N4
| | - Majid H. Mohajerani
- Department of Neuroscience, Canadian Centre for Behavioural Neuroscience, University of Lethbridge, Lethbridge, AB, Canada, T1K 3M4
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Hu D, Wang S, Li B, Liu H, He J. Spinal Cord Injury-Induced Changes in Encoding and Decoding of Bipedal Walking by Motor Cortical Ensembles. Brain Sci 2021; 11:brainsci11091193. [PMID: 34573213 PMCID: PMC8469283 DOI: 10.3390/brainsci11091193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Revised: 08/30/2021] [Accepted: 09/07/2021] [Indexed: 11/24/2022] Open
Abstract
Recent studies have shown that motor recovery following spinal cord injury (SCI) is task-specific. However, most consequential conclusions about locomotor functional recovery from SCI have been derived from quadrupedal locomotion paradigms. In this study, two monkeys were trained to perform a bipedal walking task, mimicking human walking, before and after T8 spinal cord hemisection. Importantly, there is no pharmacological therapy with nerve growth factor for monkeys after SCI; thus, in this study, the changes that occurred in the brain were spontaneous. The impairment of locomotion on the ipsilateral side was more severe than that on the contralateral side. We used information theory to analyze single-cell activity from the left primary motor cortex (M1), and results show that neuronal populations in the unilateral primary motor cortex gradually conveyed more information about the bilateral hindlimb muscle activities during the training of bipedal walking after SCI. We further demonstrated that, after SCI, progressively expanded information from the neuronal population reconstructed more accurate control of muscle activity. These results suggest that, after SCI, the unilateral primary motor cortex could gradually regain control of bilateral coordination and motor recovery and in turn enhance the performance of brain–machine interfaces.
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Affiliation(s)
- Dingyin Hu
- School of Mechatronical Engineering, Beijing Institute of Technology, Beijing 100081, China; (B.L.); (H.L.); (J.H.)
- Beijing Advanced Innovation Center for Intelligent Robots and Systems, Beijing 100081, China;
- Correspondence:
| | - Shirong Wang
- Beijing Advanced Innovation Center for Intelligent Robots and Systems, Beijing 100081, China;
| | - Bo Li
- School of Mechatronical Engineering, Beijing Institute of Technology, Beijing 100081, China; (B.L.); (H.L.); (J.H.)
| | - Honghao Liu
- School of Mechatronical Engineering, Beijing Institute of Technology, Beijing 100081, China; (B.L.); (H.L.); (J.H.)
| | - Jiping He
- School of Mechatronical Engineering, Beijing Institute of Technology, Beijing 100081, China; (B.L.); (H.L.); (J.H.)
- Beijing Advanced Innovation Center for Intelligent Robots and Systems, Beijing 100081, China;
- Center for Neural Interface Design, School of Biological and Health Systems Engineering, Arizona State University, Tempe, AZ 86287, USA
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Lashgari E, Ott J, Connelly A, Baldi P, Maoz U. An end-to-end CNN with attentional mechanism applied to raw EEG in a BCI classification task. J Neural Eng 2021; 18. [PMID: 34352734 DOI: 10.1088/1741-2552/ac1ade] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 08/05/2021] [Indexed: 11/12/2022]
Abstract
Objective.Motor-imagery (MI) classification base on electroencephalography (EEG) has been long studied in neuroscience and more recently widely used in healthcare applications such as mobile assistive robots and neurorehabilitation. In particular, EEG-based MI classification methods that rely on convolutional neural networks (CNNs) have achieved relatively high classification accuracy. However, naively training CNNs to classify raw EEG data from all channels, especially for high-density EEG, is computationally demanding and requires huge training sets. It often also introduces many irrelevant input features, making it difficult for the CNN to extract the informative ones. This problem is compounded by a dearth of training data, which is particularly acute for MI tasks, because these are cognitively demanding and thus fatigue inducing.Approach.To address these issues, we proposed an end-to-end CNN-based neural network with attentional mechanism together with different data augmentation (DA) techniques. We tested it on two benchmark MI datasets, brain-computer interface (BCI) competition IV 2a and 2b. In addition, we collected a new dataset, recorded using high-density EEG, and containing both MI and motor execution (ME) tasks, which we share with the community.Main results.Our proposed neural-network architecture outperformed all state-of-the-art methods that we found in the literature, with and without DA, reaching an average classification accuracy of 93.6% and 87.83% on BCI 2a and 2b, respectively. We also directly compare decoding of MI and ME tasks. Focusing on MI classification, we find optimal channel configurations and the best DA techniques as well as investigate combining data across participants and the role of transfer learning.Significance.Our proposed approach improves the classification accuracy for MI in the benchmark datasets. In addition, collecting our own dataset enables us to compare MI and ME and investigate various aspects of EEG decoding critical for neuroscience and BCI.
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Affiliation(s)
- Elnaz Lashgari
- Schmid College of Science and Technology, Chapman University, Orange, CA, United States of America.,Institute for Interdisciplinary Brain and Behavioral Sciences, Chapman University, Orange, CA, United States of America
| | - Jordan Ott
- Department of Computer Science, University of California, Irvine, CA, United States of America
| | - Akima Connelly
- Schmid College of Science and Technology, Chapman University, Orange, CA, United States of America.,Institute for Interdisciplinary Brain and Behavioral Sciences, Chapman University, Orange, CA, United States of America
| | - Pierre Baldi
- Department of Computer Science, University of California, Irvine, CA, United States of America.,Center for Machine Learning and Intelligent Systems, University of California Irvine, Irvine, CA, United States of America.,Institute for Genomics and Bioinformatics, University of California Irvine, Irvine, CA, United States of America
| | - Uri Maoz
- Schmid College of Science and Technology, Chapman University, Orange, CA, United States of America.,Institute for Interdisciplinary Brain and Behavioral Sciences, Chapman University, Orange, CA, United States of America.,Computational Neuroscience and Psychology, Crean College of Health and Behavioral Sciences, Chapman University, Orange, CA, United States of America.,Fowler School of Engineering, Chapman University, Orange, CA, United States of America.,Anderson School of Management, University of California Los Angeles, Los Angeles, CA, United States of America.,Biology and Bioengineering, California Institute of Technology, Pasadena, CA, United States of America
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Zhu H, Jin W, Zhou J, Tong S, Xu X, Sun J. Nodal Memberships to Communities of Functional Brain Networks Reveal Functional Flexibility and Individualized Connectome. Cereb Cortex 2021; 31:5090-5106. [PMID: 34387312 DOI: 10.1093/cercor/bhab144] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 04/30/2021] [Accepted: 04/30/2021] [Indexed: 11/12/2022] Open
Abstract
Human brain network is organized as interconnected communities for supporting cognition and behavior. Despite studies on the nonoverlapping communities of brain network, overlapping community structure and its relationship to brain function remain largely unknown. With this consideration, we employed the Bayesian nonnegative matrix factorization to decompose the functional brain networks constructed from resting-state fMRI data into overlapping communities with interdigitated mapping to functional subnetworks. By examining the heterogeneous nodal membership to communities, we classified nodes into three classes: Most nodes in somatomotor and limbic subnetworks were affiliated with one dominant community and classified as unimodule nodes; most nodes in attention and frontoparietal subnetworks were affiliated with more than two communities and classified as multimodule nodes; and the remaining nodes affiliated with two communities were classified as bimodule nodes. This three-class paradigm was highly reproducible across sessions and subjects. Furthermore, the more likely a node was classified as multimodule node, the more flexible it will be engaged in multiple tasks. Finally, the FC feature vector associated with multimodule nodes could serve as connectome "fingerprinting" to gain high subject discriminability. Together, our findings offer new insights on the flexible spatial overlapping communities that related to task-based functional flexibility and individual connectome "fingerprinting."
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Affiliation(s)
- Hong Zhu
- Shanghai Med-X Engineering Research Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China
| | - Wen Jin
- Shanghai Med-X Engineering Research Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China
| | - Jie Zhou
- Shanghai Med-X Engineering Research Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China
| | - Shanbao Tong
- Shanghai Med-X Engineering Research Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China
| | - Xiaoke Xu
- College of Information and Communication Engineering, Dalian Minzu University, Dalian 116600, China
| | - Junfeng Sun
- Shanghai Med-X Engineering Research Center, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China
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36
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Ghoroghchian N, Dasarathy G, Draper SC. Graph Community Detection from Coarse Measurements: Recovery Conditions for the Coarsened Weighted Stochastic Block Model. PROCEEDINGS OF MACHINE LEARNING RESEARCH 2021; 130:3619-3627. [PMID: 34258582 PMCID: PMC8275009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
We study the problem of community recovery from coarse measurements of a graph. In contrast to the problem of community recovery of a fully observed graph, one often encounters situations when measurements of a graph are made at low-resolution, each measurement integrating across multiple graph nodes. Such low-resolution measurements effectively induce a coarse graph with its own communities. Our objective is to develop conditions on the graph structure, the quantity, and properties of measurements, under which we can recover the community organization in this coarse graph. In this paper, we build on the stochastic block model by mathematically formalizing the coarsening process, and characterizing its impact on the community members and connections. Through this novel setup and modeling, we characterize an error bound for community recovery. The error bound yields simple and closed-form asymptotic conditions to achieve the perfect recovery of the coarse graph communities.
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37
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Ting CM, Samdin SB, Tang M, Ombao H. Detecting Dynamic Community Structure in Functional Brain Networks Across Individuals: A Multilayer Approach. IEEE TRANSACTIONS ON MEDICAL IMAGING 2021; 40:468-480. [PMID: 33044929 DOI: 10.1109/tmi.2020.3030047] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
OBJECTIVE We present a unified statistical framework for characterizing community structure of brain functional networks that captures variation across individuals and evolution over time. Existing methods for community detection focus only on single-subject analysis of dynamic networks; while recent extensions to multiple-subjects analysis are limited to static networks. METHOD To overcome these limitations, we propose a multi-subject, Markov-switching stochastic block model (MSS-SBM) to identify state-related changes in brain community organization over a group of individuals. We first formulate a multilayer extension of SBM to describe the time-dependent, multi-subject brain networks. We develop a novel procedure for fitting the multilayer SBM that builds on multislice modularity maximization which can uncover a common community partition of all layers (subjects) simultaneously. By augmenting with a dynamic Markov switching process, our proposed method is able to capture a set of distinct, recurring temporal states with respect to inter-community interactions over subjects and the change points between them. RESULTS Simulation shows accurate community recovery and tracking of dynamic community regimes over multilayer networks by the MSS-SBM. Application to task fMRI reveals meaningful non-assortative brain community motifs, e.g., core-periphery structure at the group level, that are associated with language comprehension and motor functions suggesting their putative role in complex information integration. Our approach detected dynamic reconfiguration of modular connectivity elicited by varying task demands and identified unique profiles of intra and inter-community connectivity across different task conditions. CONCLUSION The proposed multilayer network representation provides a principled way of detecting synchronous, dynamic modularity in brain networks across subjects.
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38
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Boukhdhir A, Zhang Y, Mignotte M, Bellec P. Unraveling reproducible dynamic states of individual brain functional parcellation. Netw Neurosci 2021; 5:28-55. [PMID: 33688605 PMCID: PMC7935036 DOI: 10.1162/netn_a_00168] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 09/08/2020] [Indexed: 01/04/2023] Open
Abstract
Data-driven parcellations are widely used for exploring the functional organization of the brain, and also for reducing the high dimensionality of fMRI data. Despite the flurry of methods proposed in the literature, functional brain parcellations are not highly reproducible at the level of individual subjects, even with very long acquisitions. Some brain areas are also more difficult to parcellate than others, with association heteromodal cortices being the most challenging. An important limitation of classical parcellations is that they are static, that is, they neglect dynamic reconfigurations of brain networks. In this paper, we proposed a new method to identify dynamic states of parcellations, which we hypothesized would improve reproducibility over static parcellation approaches. For a series of seed voxels in the brain, we applied a cluster analysis to regroup short (3 min) time windows into "states" with highly similar seed parcels. We split individual time series of the Midnight scan club sample into two independent sets of 2.5 hr (test and retest). We found that average within-state parcellations, called stability maps, were highly reproducible (over 0.9 test-retest spatial correlation in many instances) and subject specific (fingerprinting accuracy over 70% on average) between test and retest. Consistent with our hypothesis, seeds in heteromodal cortices (posterior and anterior cingulate) showed a richer repertoire of states than unimodal (visual) cortex. Taken together, our results indicate that static functional parcellations are incorrectly averaging well-defined and distinct dynamic states of brain parcellations. This work calls to revisit previous methods based on static parcellations, which includes the majority of published network analyses of fMRI data. Our method may, thus, impact how researchers model the rich interactions between brain networks in health and disease.
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Affiliation(s)
- Amal Boukhdhir
- Centre de recherche de l’institut universitaire de gériatrie de Montréal, Montréal, Québec, Canada
- Département d’informatique et de recherche opérationnelle, Université de Montréal, Montréal, Québec, Canada
| | - Yu Zhang
- Centre de recherche de l’institut universitaire de gériatrie de Montréal, Montréal, Québec, Canada
- Département de psychologie, Université de Montréal, Montréal, Québec, Canada
| | - Max Mignotte
- Département de psychologie, Université de Montréal, Montréal, Québec, Canada
| | - Pierre Bellec
- Centre de recherche de l’institut universitaire de gériatrie de Montréal, Montréal, Québec, Canada
- Département de psychologie, Université de Montréal, Montréal, Québec, Canada
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Kim SK, Kirchner EA, Schloßmüller L, Kirchner F. Errors in Human-Robot Interactions and Their Effects on Robot Learning. Front Robot AI 2021; 7:558531. [PMID: 33501322 PMCID: PMC7805941 DOI: 10.3389/frobt.2020.558531] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Accepted: 08/19/2020] [Indexed: 11/13/2022] Open
Abstract
During human-robot interaction, errors will occur. Hence, understanding the effects of interaction errors and especially the effect of prior knowledge on robot learning performance is relevant to develop appropriate approaches for learning under natural interaction conditions, since future robots will continue to learn based on what they have already learned. In this study, we investigated interaction errors that occurred under two learning conditions, i.e., in the case that the robot learned without prior knowledge (cold-start learning) and in the case that the robot had prior knowledge (warm-start learning). In our human-robot interaction scenario, the robot learns to assign the correct action to a current human intention (gesture). Gestures were not predefined but the robot had to learn their meaning. We used a contextual-bandit approach to maximize the expected payoff by updating (a) the current human intention (gesture) and (b) the current human intrinsic feedback after each action selection of the robot. As an intrinsic evaluation of the robot behavior we used the error-related potential (ErrP) in the human electroencephalogram as reinforcement signal. Either gesture errors (human intentions) can be misinterpreted by incorrectly captured gestures or errors in the ErrP classification (human feedback) can occur. We investigated these two types of interaction errors and their effects on the learning process. Our results show that learning and its online adaptation was successful under both learning conditions (except for one subject in cold-start learning). Furthermore, warm-start learning achieved faster convergence, while cold-start learning was less affected by online changes in the current context.
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Affiliation(s)
- Su Kyoung Kim
- Robotics Innovation Center, German Research Center for Artificial Intelligence (DFKI GmbH), Bremen, Germany
| | - Elsa Andrea Kirchner
- Robotics Innovation Center, German Research Center for Artificial Intelligence (DFKI GmbH), Bremen, Germany.,Research Group Robotics, University of Bremen, Bremen, Germany
| | | | - Frank Kirchner
- Robotics Innovation Center, German Research Center for Artificial Intelligence (DFKI GmbH), Bremen, Germany.,Research Group Robotics, University of Bremen, Bremen, Germany
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40
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Yang Z, Telesford QK, Franco AR, Lim R, Gu S, Xu T, Ai L, Castellanos FX, Yan CG, Colcombe S, Milham MP. Measurement reliability for individual differences in multilayer network dynamics: Cautions and considerations. Neuroimage 2021; 225:117489. [PMID: 33130272 PMCID: PMC7829665 DOI: 10.1016/j.neuroimage.2020.117489] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 10/21/2020] [Indexed: 01/16/2023] Open
Abstract
Multilayer network models have been proposed as an effective means of capturing the dynamic configuration of distributed neural circuits and quantitatively describing how communities vary over time. Beyond general insights into brain function, a growing number of studies have begun to employ these methods for the study of individual differences. However, test-retest reliabilities for multilayer network measures have yet to be fully quantified or optimized, potentially limiting their utility for individual difference studies. Here, we systematically evaluated the impact of multilayer community detection algorithms, selection of network parameters, scan duration, and task condition on test-retest reliabilities of multilayer network measures (i.e., flexibility, integration, and recruitment). A key finding was that the default method used for community detection by the popular generalized Louvain algorithm can generate erroneous results. Although available, an updated algorithm addressing this issue is yet to be broadly adopted in the neuroimaging literature. Beyond the algorithm, the present work identified parameter selection as a key determinant of test-retest reliability; however, optimization of these parameters and expected reliabilities appeared to be dataset-specific. Once parameters were optimized, consistent with findings from the static functional connectivity literature, scan duration was a much stronger determinant of reliability than scan condition. When the parameters were optimized and scan duration was sufficient, both passive (i.e., resting state, Inscapes, and movie) and active (i.e., flanker) tasks were reliable, although reliability in the movie watching condition was significantly higher than in the other three tasks. The minimal data requirement for achieving reliable measures for the movie watching condition was 20 min, and 30 min for the other three tasks. Our results caution the field against the use of default parameters without optimization based on the specific datasets to be employed - a process likely to be limited for most due to the lack of test-retest samples to enable parameter optimization.
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Affiliation(s)
- Zhen Yang
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States; Department of Psychiatry, NYU Grossman School of Medicine, 550 1st Avenue, New York, NY 10016, United States.
| | - Qawi K Telesford
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States
| | - Alexandre R Franco
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States; Department of Psychiatry, NYU Grossman School of Medicine, 550 1st Avenue, New York, NY 10016, United States; Center for the Developing Brain, The Child Mind Institute, 101 East 56th Street, New York, NY 10022, United States
| | - Ryan Lim
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States
| | - Shi Gu
- University of Electronic Science and Technology of China, Chengdu, Sichuan, China
| | - Ting Xu
- Center for the Developing Brain, The Child Mind Institute, 101 East 56th Street, New York, NY 10022, United States
| | - Lei Ai
- Center for the Developing Brain, The Child Mind Institute, 101 East 56th Street, New York, NY 10022, United States
| | - Francisco X Castellanos
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States; Department of Child and Adolescent Psychiatry, NYU Grossman School of Medicine, New York, NY 10016, United States
| | - Chao-Gan Yan
- CAS Key Laboratory of Behavioral Science, Institute of Psychology, Beijing, China
| | - Stan Colcombe
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States; Department of Psychiatry, NYU Grossman School of Medicine, 550 1st Avenue, New York, NY 10016, United States
| | - Michael P Milham
- Center for Biomedical Imaging and Neuromodulation, The Nathan S. Kline Institute for Psychiatric Research, 140 Old Orangeburg Rd, Orangeburg, NY 10962, United States; Center for the Developing Brain, The Child Mind Institute, 101 East 56th Street, New York, NY 10022, United States.
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41
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Kashyap R, Eng GK, Bhattacharjee S, Gupta B, Ho R, Ho CSH, Zhang M, Mahendran R, Sim K, Chen SHA. Individual-fMRI-approaches reveal cerebellum and visual communities to be functionally connected in obsessive compulsive disorder. Sci Rep 2021; 11:1354. [PMID: 33446780 PMCID: PMC7809273 DOI: 10.1038/s41598-020-80346-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 12/11/2020] [Indexed: 01/29/2023] Open
Abstract
There is significant interest in understanding the pathophysiology of Obsessive-Compulsive Disorder (OCD) using resting-state fMRI (rsfMRI). Previous studies acknowledge abnormalities within and beyond the fronto-striato-limbic circuit in OCD that require further clarifications. However, limited information could be inferred from the conventional way of investigating the functional connectivity differences between OCD and healthy controls. Here, we identified altered brain organization in patients with OCD by applying individual-based approaches to maximize the identification of underlying network-based features specific to the OCD group. rsfMRI of 20 patients with OCD and 22 controls were preprocessed, and individual-fMRI-subspace was derived for each subject within each group. We evaluated group differences in functional connectivity using individual-fMRI-subspace and established its advantage over conventional-fMRI methodology. We applied prediction-based approaches to highlight the group differences by evaluating the differences in functional connections that predicted the clinical scores (namely, the Obsessive-Compulsive Inventory-Revised (OCI-R) and Hamilton Anxiety Rating Scale). Then, we explored the brain network organization of both groups by estimating the subject-specific communities within each group. Lastly, we evaluated associations between the inter-individual variation of nodes in the communities to clinical measures using linear regression. Functional connectivity analysis using individual-fMRI-subspace detected 83 connections that were different between OCD and control groups, compared to none found using conventional-fMRI methodology. Connectome-based prediction analysis did not show significant overlap between the two groups in the functional connections that predicted the clinical scores. This suggests that the functional architecture in patients with OCD may be different compared to controls. Seven communities were found in both groups. Interestingly, within the OCD group but not controls, we observed functional connectivity between cerebellar and visual regions, and lack of connectivity between striato-limbic and frontal areas. Inter-individual variations in the community-size of these two communities were also associated with the OCI-R score (p < .005). Due to our small sample size, we further validated our results by (i) accounting for head motion, (ii) applying global signal regression (GSR) in data processing, and (iii) using an alternate atlas for parcellation. While the main results were consistently observed with accounting for head motion and using another atlas, the key findings were not reproduced with GSR application. The study demonstrated the existence of disconnectedness in fronto-striato-limbic community and connectedness between cerebellar and visual areas in OCD patients, which was also related to the clinical symptomatology of OCD.
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Affiliation(s)
- Rajan Kashyap
- Centre for Research and Development in Learning (CRADLE), Nanyang Technological University, CRADLE, 61 Nanyang Drive, ABN-01b-10, Singapore, 637335, Singapore.
| | - Goi Khia Eng
- Department of Psychiatry, New York University School of Medicine, New York, USA
- Division of Clinical Research, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, USA
- School of Social Sciences (SSS), Nanyang Technological University, 48 Nanyang Ave, SHHK-04-19, Singapore, 639818, Singapore
| | - Sagarika Bhattacharjee
- School of Social Sciences (SSS), Nanyang Technological University, 48 Nanyang Ave, SHHK-04-19, Singapore, 639818, Singapore
| | - Bhanu Gupta
- Community Psychiatry, Institute of Mental Health, Singapore, Singapore
| | - Roger Ho
- Psychological Medicine, National University Health Systems, Singapore, Singapore
| | - Cyrus S H Ho
- Psychological Medicine, National University Health Systems, Singapore, Singapore
| | - Melvyn Zhang
- Psychological Medicine, National University Health Systems, Singapore, Singapore
| | - Rathi Mahendran
- Psychological Medicine, National University Health Systems, Singapore, Singapore
- Academic Development Department, Duke-NUS Medical School, Singapore, Singapore
| | - Kang Sim
- West Region, Institute of Mental Health, Singapore, Singapore
| | - S H Annabel Chen
- Centre for Research and Development in Learning (CRADLE), Nanyang Technological University, CRADLE, 61 Nanyang Drive, ABN-01b-10, Singapore, 637335, Singapore.
- School of Social Sciences (SSS), Nanyang Technological University, 48 Nanyang Ave, SHHK-04-19, Singapore, 639818, Singapore.
- Lee Kong Chian School of Medicine (LKC Medicine), Nanyang Technological University, Singapore, Singapore.
- Office of Educational Research, National Institute of Education, Nanyang Technological University, Singapore, Singapore.
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42
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Malagurski B, Liem F, Oschwald J, Mérillat S, Jäncke L. Longitudinal functional brain network reconfiguration in healthy aging. Hum Brain Mapp 2020; 41:4829-4845. [PMID: 32857461 PMCID: PMC7643380 DOI: 10.1002/hbm.25161] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 07/12/2020] [Accepted: 07/19/2020] [Indexed: 12/17/2022] Open
Abstract
Healthy aging is associated with changes in cognitive performance and functional brain organization. In fact, cross-sectional studies imply lower modularity and significant heterogeneity in modular architecture across older subjects. Here, we used a longitudinal dataset consisting of four occasions of resting-state-fMRI and cognitive testing (spanning 4 years) in 150 healthy older adults. We applied a graph-theoretic analysis to investigate the time-evolving modular structure of the whole-brain network, by maximizing the multilayer modularity across four time points. Global flexibility, which reflects the tendency of brain nodes to switch between modules across time, was significantly higher in healthy elderly than in a temporal null model. Further, global flexibility, as well as network-specific flexibility of the default mode, frontoparietal control, and somatomotor networks, were significantly associated with age at baseline. These results indicate that older age is related to higher variability in modular organization. The temporal metrics were not associated with simultaneous changes in processing speed or learning performance in the context of memory encoding. Finally, this approach provides global indices for longitudinal change across a given time span and it may contribute to uncovering patterns of modular variability in healthy and clinical aging populations.
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Affiliation(s)
- Brigitta Malagurski
- University Research Priority Program “Dynamics of Healthy Aging”University of ZurichZurichSwitzerland
| | - Franziskus Liem
- University Research Priority Program “Dynamics of Healthy Aging”University of ZurichZurichSwitzerland
| | - Jessica Oschwald
- University Research Priority Program “Dynamics of Healthy Aging”University of ZurichZurichSwitzerland
| | - Susan Mérillat
- University Research Priority Program “Dynamics of Healthy Aging”University of ZurichZurichSwitzerland
| | - Lutz Jäncke
- University Research Priority Program “Dynamics of Healthy Aging”University of ZurichZurichSwitzerland
- Division of Neuropsychology, Institute of PsychologyUniversity of ZurichZurichSwitzerland
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43
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Paquola C, Seidlitz J, Benkarim O, Royer J, Klimes P, Bethlehem RAI, Larivière S, Vos de Wael R, Rodríguez-Cruces R, Hall JA, Frauscher B, Smallwood J, Bernhardt BC. A multi-scale cortical wiring space links cellular architecture and functional dynamics in the human brain. PLoS Biol 2020; 18:e3000979. [PMID: 33253185 PMCID: PMC7728398 DOI: 10.1371/journal.pbio.3000979] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2020] [Revised: 12/10/2020] [Accepted: 11/02/2020] [Indexed: 12/11/2022] Open
Abstract
The vast net of fibres within and underneath the cortex is optimised to support the convergence of different levels of brain organisation. Here, we propose a novel coordinate system of the human cortex based on an advanced model of its connectivity. Our approach is inspired by seminal, but so far largely neglected models of cortico-cortical wiring established by postmortem anatomical studies and capitalises on cutting-edge in vivo neuroimaging and machine learning. The new model expands the currently prevailing diffusion magnetic resonance imaging (MRI) tractography approach by incorporation of additional features of cortical microstructure and cortico-cortical proximity. Studying several datasets and different parcellation schemes, we could show that our coordinate system robustly recapitulates established sensory-limbic and anterior-posterior dimensions of brain organisation. A series of validation experiments showed that the new wiring space reflects cortical microcircuit features (including pyramidal neuron depth and glial expression) and allowed for competitive simulations of functional connectivity and dynamics based on resting-state functional magnetic resonance imaging (rs-fMRI) and human intracranial electroencephalography (EEG) coherence. Our results advance our understanding of how cell-specific neurobiological gradients produce a hierarchical cortical wiring scheme that is concordant with increasing functional sophistication of human brain organisation. Our evaluations demonstrate the cortical wiring space bridges across scales of neural organisation and can be easily translated to single individuals.
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Affiliation(s)
- Casey Paquola
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Jakob Seidlitz
- Developmental Neurogenomics Unit, National Institute of Mental Health, Bethesda, Maryland, United States of America
| | - Oualid Benkarim
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Jessica Royer
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Petr Klimes
- Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | | | - Sara Larivière
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Reinder Vos de Wael
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Raul Rodríguez-Cruces
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Jeffery A. Hall
- Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | - Birgit Frauscher
- Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
| | | | - Boris C. Bernhardt
- Multimodal Imaging and Connectome Analysis Lab, McConnell Brain Imaging Centre, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada
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44
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Bijsterbosch J, Harrison SJ, Jbabdi S, Woolrich M, Beckmann C, Smith S, Duff EP. Challenges and future directions for representations of functional brain organization. Nat Neurosci 2020; 23:1484-1495. [PMID: 33106677 DOI: 10.1038/s41593-020-00726-z] [Citation(s) in RCA: 64] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 09/16/2020] [Indexed: 12/12/2022]
Abstract
A key principle of brain organization is the functional integration of brain regions into interconnected networks. Functional MRI scans acquired at rest offer insights into functional integration via patterns of coherent fluctuations in spontaneous activity, known as functional connectivity. These patterns have been studied intensively and have been linked to cognition and disease. However, the field is fractionated. Diverging analysis approaches have segregated the community into research silos, limiting the replication and clinical translation of findings. A primary source of this fractionation is the diversity of approaches used to reduce complex brain data into a lower-dimensional set of features for analysis and interpretation, which we refer to as brain representations. In this Primer, we provide an overview of different brain representations, lay out the challenges that have led to the fractionation of the field and that continue to form obstacles for convergence, and propose concrete guidelines to unite the field.
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Affiliation(s)
- Janine Bijsterbosch
- Mallinckrodt Institute of Radiology, Washington University in St Louis, Saint Louis, MO, USA. .,Centre for Functional MRI of the Brain (FMRIB), Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford. John Radcliffe Hospital, Oxford, UK.
| | - Samuel J Harrison
- Centre for Functional MRI of the Brain (FMRIB), Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford. John Radcliffe Hospital, Oxford, UK.,Translational Neuromodeling Unit, University of Zurich & ETH Zurich, Zurich, Switzerland
| | - Saad Jbabdi
- Centre for Functional MRI of the Brain (FMRIB), Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford. John Radcliffe Hospital, Oxford, UK
| | - Mark Woolrich
- Oxford Centre for Human Brain Activity (OHBA), Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Warneford Hospital, Oxford, UK
| | - Christian Beckmann
- Donders Institute and Department of Cognitive Neurosciences, Radboud University Medical Centre, Nijmegen, The Netherlands
| | - Stephen Smith
- Centre for Functional MRI of the Brain (FMRIB), Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford. John Radcliffe Hospital, Oxford, UK
| | - Eugene P Duff
- Centre for Functional MRI of the Brain (FMRIB), Wellcome Centre for Integrative Neuroimaging, Nuffield Department of Clinical Neurosciences, University of Oxford. John Radcliffe Hospital, Oxford, UK. .,Department of Paediatrics, University of Oxford, John Radcliffe Hospital, Oxford, UK.
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45
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Edge-centric functional network representations of human cerebral cortex reveal overlapping system-level architecture. Nat Neurosci 2020; 23:1644-1654. [PMID: 33077948 DOI: 10.1038/s41593-020-00719-y] [Citation(s) in RCA: 112] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 09/03/2020] [Indexed: 12/18/2022]
Abstract
Network neuroscience has relied on a node-centric network model in which cells, populations and regions are linked to one another via anatomical or functional connections. This model cannot account for interactions of edges with one another. In this study, we developed an edge-centric network model that generates constructs 'edge time series' and 'edge functional connectivity' (eFC). Using network analysis, we show that, at rest, eFC is consistent across datasets and reproducible within the same individual over multiple scan sessions. We demonstrate that clustering eFC yields communities of edges that naturally divide the brain into overlapping clusters, with regions in sensorimotor and attentional networks exhibiting the greatest levels of overlap. We show that eFC is systematically modulated by variation in sensory input. In future work, the edge-centric approach could be useful for identifying novel biomarkers of disease, characterizing individual variation and mapping the architecture of highly resolved neural circuits.
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46
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The modular organization of brain cortical connectivity across the human lifespan. Neuroimage 2020; 218:116974. [DOI: 10.1016/j.neuroimage.2020.116974] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 02/17/2020] [Accepted: 05/17/2020] [Indexed: 11/19/2022] Open
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47
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Gordon EM, Laumann TO, Marek S, Raut RV, Gratton C, Newbold DJ, Greene DJ, Coalson RS, Snyder AZ, Schlaggar BL, Petersen SE, Dosenbach NUF, Nelson SM. Default-mode network streams for coupling to language and control systems. Proc Natl Acad Sci U S A 2020; 117:17308-17319. [PMID: 32632019 PMCID: PMC7382234 DOI: 10.1073/pnas.2005238117] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The human brain is organized into large-scale networks identifiable using resting-state functional connectivity (RSFC). These functional networks correspond with broad cognitive domains; for example, the Default-mode network (DMN) is engaged during internally oriented cognition. However, functional networks may contain hierarchical substructures corresponding with more specific cognitive functions. Here, we used individual-specific precision RSFC to test whether network substructures could be identified in 10 healthy human brains. Across all subjects and networks, individualized network subdivisions were more valid-more internally homogeneous and better matching spatial patterns of task activation-than canonical networks. These measures of validity were maximized at a hierarchical scale that contained ∼83 subnetworks across the brain. At this scale, nine DMN subnetworks exhibited topographical similarity across subjects, suggesting that this approach identifies homologous neurobiological circuits across individuals. Some DMN subnetworks matched known features of brain organization corresponding with cognitive functions. Other subnetworks represented separate streams by which DMN couples with other canonical large-scale networks, including language and control networks. Together, this work provides a detailed organizational framework for studying the DMN in individual humans.
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Affiliation(s)
- Evan M Gordon
- Veterans Integrated Service Network 17 Center of Excellence for Research on Returning War Veterans, US Department of Veterans Affairs, Waco, TX 76711;
- Center for Vital Longevity, School of Behavioral and Brain Sciences, University of Texas at Dallas, Dallas, TX 75235
- Department of Psychology and Neuroscience, Baylor University, Waco, TX 76789
| | - Timothy O Laumann
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110
| | - Scott Marek
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
| | - Ryan V Raut
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
| | - Caterina Gratton
- Department of Psychology, Northwestern University, Evanston, IL 60208
| | - Dillan J Newbold
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
| | - Deanna J Greene
- Department of Psychiatry, Washington University School of Medicine, St. Louis, MO 63110
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
| | - Rebecca S Coalson
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
| | - Abraham Z Snyder
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
| | - Bradley L Schlaggar
- Kennedy Krieger Institute, Baltimore, MD 21205
- Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD 21205
- Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21205
| | - Steven E Petersen
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Neuroscience, Washington University School of Medicine, St. Louis, MO 63110
- Department of Psychological & Brain Sciences, Washington University School of Medicine, St. Louis, MO 63110
| | - Nico U F Dosenbach
- Department of Neurology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Radiology, Washington University School of Medicine, St. Louis, MO 63110
- Department of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110
- Department of Biomedical Engineering, Washington University School of Medicine, St. Louis, MO 63110
- Program in Occupational Therapy, Washington University School of Medicine, St. Louis, MO 63110
| | - Steven M Nelson
- Veterans Integrated Service Network 17 Center of Excellence for Research on Returning War Veterans, US Department of Veterans Affairs, Waco, TX 76711
- Center for Vital Longevity, School of Behavioral and Brain Sciences, University of Texas at Dallas, Dallas, TX 75235
- Department of Psychology and Neuroscience, Baylor University, Waco, TX 76789
- Department of Psychiatry and Behavioral Science, Texas A&M Health Science Center, Bryan, TX 77807
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48
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Jalbrzikowski M, Liu F, Foran W, Klei L, Calabro FJ, Roeder K, Devlin B, Luna B. Functional connectome fingerprinting accuracy in youths and adults is similar when examined on the same day and 1.5-years apart. Hum Brain Mapp 2020; 41:4187-4199. [PMID: 32652852 PMCID: PMC7502841 DOI: 10.1002/hbm.25118] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Revised: 04/06/2020] [Accepted: 04/12/2020] [Indexed: 12/28/2022] Open
Abstract
Pioneering studies have shown that individual correlation measures from resting‐state functional magnetic resonance imaging studies can identify another scan from that same individual. This method is known as “connectotyping” or functional connectome “fingerprinting.” We analyzed a unique dataset of 12–30 years old (N = 140) individuals who had two distinct resting state scans on the same day and again 12–18 months later to assess the sensitivity and specificity of fingerprinting accuracy across different time scales (same day, ~1.5 years apart) and developmental periods (youths, adults). Sensitivity and specificity to identify one's own scan was high (average AUC = 0.94), although it was significantly higher in the same day (average AUC = 0.97) than 1.5‐years later (average AUC = 0.91). Accuracy in youths (average AUC = 0.93) was not significantly different from adults (average AUC = 0.96). Multiple statistical methods revealed select connections from the Frontoparietal, Default, and Dorsal Attention networks enhanced the ability to identify an individual. Identification of these features generalized across datasets and improved fingerprinting accuracy in a longitudinal replication data set (N = 208). These results provide a framework for understanding the sensitivity and specificity of fingerprinting accuracy in adolescents and adults at multiple time scales. Importantly, distinct features of one's “fingerprint” contribute to one's uniqueness, suggesting that cognitive and default networks play a primary role in the individualization of one's connectome.
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Affiliation(s)
| | - Fuchen Liu
- Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA
| | - William Foran
- University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | | | - Finnegan J Calabro
- University of Pittsburgh, Pittsburgh, Pennsylvania, USA.,Department of Bioengineering, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Kathryn Roeder
- Department of Statistics, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.,Department of Computational Biology, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA
| | - Bernie Devlin
- University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Beatriz Luna
- Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.,Department of Psychology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.,Department of Pediatrics, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
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49
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Pritschet L, Santander T, Taylor CM, Layher E, Yu S, Miller MB, Grafton ST, Jacobs EG. Functional reorganization of brain networks across the human menstrual cycle. Neuroimage 2020; 220:117091. [PMID: 32621974 DOI: 10.1016/j.neuroimage.2020.117091] [Citation(s) in RCA: 76] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2019] [Revised: 06/17/2020] [Accepted: 06/23/2020] [Indexed: 02/06/2023] Open
Abstract
The brain is an endocrine organ, sensitive to the rhythmic changes in sex hormone production that occurs in most mammalian species. In rodents and nonhuman primates, estrogen and progesterone's impact on the brain is evident across a range of spatiotemporal scales. Yet, the influence of sex hormones on the functional architecture of the human brain is largely unknown. In this dense-sampling, deep phenotyping study, we examine the extent to which endogenous fluctuations in sex hormones alter intrinsic brain networks at rest in a woman who underwent brain imaging and venipuncture for 30 consecutive days. Standardized regression analyses illustrate estrogen and progesterone's widespread associations with functional connectivity. Time-lagged analyses examined the temporal directionality of these relationships and suggest that cortical network dynamics (particularly in the Default Mode and Dorsal Attention Networks, whose hubs are densely populated with estrogen receptors) are preceded-and perhaps driven-by hormonal fluctuations. A similar pattern of associations was observed in a follow-up study one year later. Together, these results reveal the rhythmic nature in which brain networks reorganize across the human menstrual cycle. Neuroimaging studies that densely sample the individual connectome have begun to transform our understanding of the brain's functional organization. As these results indicate, taking endocrine factors into account is critical for fully understanding the intrinsic dynamics of the human brain.
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Affiliation(s)
- Laura Pritschet
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
| | - Tyler Santander
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
| | - Caitlin M Taylor
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
| | - Evan Layher
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
| | - Shuying Yu
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA
| | - Michael B Miller
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA; Institute for Collaborative Biotechnologies, University of California, Santa Barbara, CA, USA; Neuroscience Research Institute, University of California, Santa Barbara, CA, USA
| | - Scott T Grafton
- Department of Psychological and Brain Sciences, University of California, Santa Barbara, CA, USA; Institute for Collaborative Biotechnologies, University of California, Santa Barbara, CA, USA
| | - Emily G Jacobs
- Neuroscience Research Institute, University of California, Santa Barbara, CA, USA.
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50
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Paul S, Chen Y. A random effects stochastic block model for joint community detection in multiple networks with applications to neuroimaging. Ann Appl Stat 2020. [DOI: 10.1214/20-aoas1339] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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