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Guo X, Li J, Li M, Zhou B, Zheng S, Li L. A molecular module connects abscisic acid with auxin signals to facilitate seasonal wood formation in Populus. PLANT, CELL & ENVIRONMENT 2024. [PMID: 38963121 DOI: 10.1111/pce.15027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 06/09/2024] [Accepted: 06/25/2024] [Indexed: 07/05/2024]
Abstract
Perennial trees have a recurring annual cycle of wood formation in response to environmental fluctuations. However, the precise molecular mechanisms that regulate the seasonal formation of wood remain poorly understood. Our prior study indicates that VCM1 and VCM2 play a vital role in regulating the activity of the vascular cambium by controlling the auxin homoeostasis of the cambium zone in Populus. This study indicates that abscisic acid (ABA) affects the expression of VCM1 and VCM2, which display seasonal fluctuations in relation to photoperiod changes. ABA-responsive transcription factors AREB4 and AREB13, which are predominantly expressed in stem secondary vascular tissue, bind to VCM1 and VCM2 promoters to induce their expression. Seasonal changes in the photoperiod affect the ABA amount, which is linked to auxin-regulated cambium activity via the functions of VCM1 and VCM2. Thus, the study reveals that AREB4/AREB13-VCM1/VCM2-PIN5b acts as a molecular module connecting ABA and auxin signals to control vascular cambium activity in seasonal wood formation.
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Affiliation(s)
- Xulei Guo
- Yuelushan Laboratory, College of Life and Environmental Sciences, Central South University of Forestry and Technology, Changsha, China
- Key Laboratory of Plant Carbon Capture, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Jian Li
- Yuelushan Laboratory, College of Life and Environmental Sciences, Central South University of Forestry and Technology, Changsha, China
- Key Laboratory of Plant Carbon Capture, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Meng Li
- Yuelushan Laboratory, College of Life and Environmental Sciences, Central South University of Forestry and Technology, Changsha, China
| | - Bo Zhou
- Yuelushan Laboratory, College of Life and Environmental Sciences, Central South University of Forestry and Technology, Changsha, China
| | - Shuai Zheng
- Key Laboratory of Plant Carbon Capture, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Laigeng Li
- Key Laboratory of Plant Carbon Capture, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China
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2
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Cheng A, Sadali NM, Rejab NA, Uludag A. Piece and parcel of gymnosperm organellar genomes. PLANTA 2024; 260:14. [PMID: 38829418 DOI: 10.1007/s00425-024-04449-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Accepted: 05/28/2024] [Indexed: 06/05/2024]
Abstract
MAIN CONCLUSION Significant past, present, and potential future research into the organellar (plastid and mitochondrial) genomes of gymnosperms that can provide insight into the unknown origin and evolution of plants is highlighted. Gymnosperms are vascular seed plants that predominated the ancient world before their sister clade, angiosperms, took over during the Late Cretaceous. The divergence of gymnosperms and angiosperms took place around 300 Mya, with the latter evolving into the diverse group of flowering plants that dominate the plant kingdom today. Although gymnosperms have reportedly made some evolutionary innovations, the literature on their genome advances, particularly their organellar (plastid and mitochondrial) genomes, is relatively scattered and fragmented. While organellar genomes can shed light on plant origin and evolution, they are frequently overlooked, due in part to their limited contribution to gene expression and lack of evolutionary dynamics when compared to nuclear genomes. A better understanding of gymnosperm organellar genomes is critical because they reveal genetic changes that have contributed to their unique adaptations and ecological success, potentially aiding in plant survival, enhancement, and biodiversity conservation in the face of climate change. This review reveals significant information and gaps in the existing knowledge base of organellar genomes in gymnosperms, as well as the challenges and research needed to unravel their complexity.
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Affiliation(s)
- Acga Cheng
- Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Najiah Mohd Sadali
- Centre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, 50603, Kuala Lumpur, Malaysia
| | - Nur Ardiyana Rejab
- Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia
- Centre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, 50603, Kuala Lumpur, Malaysia
| | - Ahmet Uludag
- Institute of Biological Sciences, Faculty of Science, Universiti Malaya, 50603, Kuala Lumpur, Malaysia
- Faculty of Agriculture, Canakkale Onsekiz Mart University, 17100, Canakkale, Türkiye
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3
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Zlobin IE. Tree post-drought recovery: scenarios, regulatory mechanisms and ways to improve. Biol Rev Camb Philos Soc 2024. [PMID: 38581143 DOI: 10.1111/brv.13083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Revised: 03/28/2024] [Accepted: 04/01/2024] [Indexed: 04/08/2024]
Abstract
Efficient post-drought recovery of growth and assimilation enables a plant to return to its undisturbed state and functioning. Unlike annual plants, trees suffer not only from the current drought, but also from cumulative impacts of consecutive water stresses which cause adverse legacy effects on survival and performance. This review provides an integrated assessment of ecological, physiological and molecular evidence on the recovery of growth and photosynthesis in trees, with a view to informing the breeding of trees with a better ability to recover from water stress. Suppression of recovery processes can result not only from stress damage but also from a controlled downshift of recovery as part of tree acclimation to water-limited conditions. In the latter case, recovery processes could potentially be activated by turning off the controlling mechanisms, but several obstacles make this unlikely. Tree phenology, and specifically photoperiodic constraints, can limit post-drought recovery of growth and photosynthesis, and targeting these constraints may represent a promising way to breed trees with an enhanced ability to recover post-drought. The mechanisms of photoperiod-dependent regulation of shoot, secondary and root growth and of assimilation processes are reviewed. Finally, the limitations and trade-offs of altering the photoperiodic regulation of growth and assimilation processes are discussed.
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Affiliation(s)
- Ilya E Zlobin
- K.A. Timiryazev Institute of Plant Physiology, RAS, 35 Botanicheskaya St, Moscow, 127276, Russia
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4
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Rauschkolb R, Bucher SF, Hensen I, Ahrends A, Fernández-Pascual E, Heubach K, Jakubka D, Jiménez-Alfaro B, König A, Koubek T, Kehl A, Khuroo AA, Lindstädter A, Shafee F, Mašková T, Platonova E, Panico P, Plos C, Primack R, Rosche C, Shah MA, Sporbert M, Stevens AD, Tarquini F, Tielbörger K, Träger S, Vange V, Weigelt P, Bonn A, Freiberg M, Knickmann B, Nordt B, Wirth C, Römermann C. Spatial variability in herbaceous plant phenology is mostly explained by variability in temperature but also by photoperiod and functional traits. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2024; 68:761-775. [PMID: 38285109 DOI: 10.1007/s00484-024-02621-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 01/05/2024] [Accepted: 01/05/2024] [Indexed: 01/30/2024]
Abstract
Whereas temporal variability of plant phenology in response to climate change has already been well studied, the spatial variability of phenology is not well understood. Given that phenological shifts may affect biotic interactions, there is a need to investigate how the variability in environmental factors relates to the spatial variability in herbaceous species' phenology by at the same time considering their functional traits to predict their general and species-specific responses to future climate change. In this project, we analysed phenology records of 148 herbaceous species, which were observed for a single year by the PhenObs network in 15 botanical gardens. For each species, we characterised the spatial variability in six different phenological stages across gardens. We used boosted regression trees to link these variabilities in phenology to the variability in environmental parameters (temperature, latitude and local habitat conditions) as well as species traits (seed mass, vegetative height, specific leaf area and temporal niche) hypothesised to be related to phenology variability. We found that spatial variability in the phenology of herbaceous species was mainly driven by the variability in temperature but also photoperiod was an important driving factor for some phenological stages. In addition, we found that early-flowering and less competitive species characterised by small specific leaf area and vegetative height were more variable in their phenology. Our findings contribute to the field of phenology by showing that besides temperature, photoperiod and functional traits are important to be included when spatial variability of herbaceous species is investigated.
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Affiliation(s)
- Robert Rauschkolb
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.
- Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Jena, Germany.
| | - Solveig Franziska Bucher
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Jena, Germany
| | - Isabell Hensen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | | | | | - Katja Heubach
- Palmengarten and Botanical Garden Frankfurt, Frankfurt am Main, Germany
| | - Desiree Jakubka
- Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Jena, Germany
| | - Borja Jiménez-Alfaro
- Biodiversity Research Institute, IMIB (Univ.Oviedo-CSIC-Princ.Asturias), Mieres, Spain
| | - Andreas König
- Palmengarten and Botanical Garden Frankfurt, Frankfurt am Main, Germany
| | - Tomáš Koubek
- Department of Botany, Faculty of Science, Charles University, Prague, Czech Republic
| | - Alexandra Kehl
- Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Anzar A Khuroo
- Department of Botany, University of Kashmir, Srinagar, Jammu & Kashmir, India
| | - Anja Lindstädter
- Institute of Biochemistry and Biology, Department of Biodiversity Research/Systematic Botany with Botanical Garden, University of Potsdam, Potsdam, Germany
| | - Faizan Shafee
- Department of Botany, University of Kashmir, Srinagar, Jammu & Kashmir, India
| | - Tereza Mašková
- Institute of Plant Sciences, Ecology and Conservation Biology, University of Regensburg, Regensburg, Germany
| | | | - Patrizia Panico
- Department of Environmental Biology, Sapienza University of Rome, Rome, Italy
| | - Carolin Plos
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | | | - Christoph Rosche
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Manzoor A Shah
- Department of Botany, University of Kashmir, Srinagar, Jammu & Kashmir, India
| | - Maria Sporbert
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | | | - Flavio Tarquini
- Department of Environmental Biology, Sapienza University of Rome, Rome, Italy
| | - Katja Tielbörger
- Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Sabrina Träger
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biology/Geobotany and Botanical Garden, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - Vibekke Vange
- Ringve Botanical Garden, NTNU University Museum, Norwegian University of Science and Technology, Trondheim, Norway
| | - Patrick Weigelt
- Biodiversity, Macroecology and Biogeography, University of Goettingen, Goettingen, Germany
- Centre of Biodiversity and Sustainable Land Use, University of Goettingen, Goettingen, Germany
- Campus Institute Data Science, University of Goettingen, Goettingen, Germany
| | - Aletta Bonn
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Ecosystem Services, Helmholtz-Centre for Environmental Research-UFZ, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Martin Freiberg
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Systematic Botany and Functional Biodiversity, Life Science, Leipzig University, Leipzig, Germany
| | | | - Birgit Nordt
- Botanic Garden Berlin, Freie Universität Berlin, Berlin, Germany
| | - Christian Wirth
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Systematic Botany and Functional Biodiversity, Life Science, Leipzig University, Leipzig, Germany
- Max-Planck-Institute for Biogeochemistry, Jena, Germany
| | - Christine Römermann
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Ecology and Evolution with Herbarium Haussknecht and Botanical Garden, Friedrich Schiller University Jena, Jena, Germany
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Chu X, Wang M, Fan Z, Li J, Yin H. Molecular Mechanisms of Seasonal Gene Expression in Trees. Int J Mol Sci 2024; 25:1666. [PMID: 38338945 PMCID: PMC10855862 DOI: 10.3390/ijms25031666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 01/22/2024] [Accepted: 01/25/2024] [Indexed: 02/12/2024] Open
Abstract
In trees, the annual cycling of active and dormant states in buds is closely regulated by environmental factors, which are of primary significance to their productivity and survival. It has been found that the parallel or convergent evolution of molecular pathways that respond to day length or temperature can lead to the establishment of conserved periodic gene expression patterns. In recent years, it has been shown in many woody plants that change in annual rhythmic patterns of gene expression may underpin the adaptive evolution in forest trees. In this review, we summarize the progress on the molecular mechanisms of seasonal regulation on the processes of shoot growth, bud dormancy, and bud break in response to day length and temperature factors. We focus on seasonal expression patterns of genes involved in dormancy and their associated epigenetic modifications; the seasonal changes in the extent of modifications, such as DNA methylation, histone acetylation, and histone methylation, at dormancy-associated loci have been revealed for their actions on gene regulation. In addition, we provide an outlook on the direction of research on the annual cycle of tree growth under climate change.
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Affiliation(s)
- Xian Chu
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China; (X.C.); (M.W.); (Z.F.); (J.L.)
- College of Information Science and Technology, Nanjing Forestry University, Nanjing 210037, China
| | - Minyan Wang
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China; (X.C.); (M.W.); (Z.F.); (J.L.)
| | - Zhengqi Fan
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China; (X.C.); (M.W.); (Z.F.); (J.L.)
| | - Jiyuan Li
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China; (X.C.); (M.W.); (Z.F.); (J.L.)
| | - Hengfu Yin
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China; (X.C.); (M.W.); (Z.F.); (J.L.)
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6
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Zhao B, Wang JW. Perenniality: From model plants to applications in agriculture. MOLECULAR PLANT 2024; 17:141-157. [PMID: 38115580 DOI: 10.1016/j.molp.2023.12.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 12/04/2023] [Accepted: 12/14/2023] [Indexed: 12/21/2023]
Abstract
To compensate for their sessile nature, plants have evolved sophisticated mechanisms enabling them to adapt to ever-changing environments. One such prominent feature is the evolution of diverse life history strategies, particularly such that annuals reproduce once followed by seasonal death, while perennials live longer by cycling growth seasonally. This intrinsic phenology is primarily genetic and can be altered by environmental factors. Although evolutionary transitions between annual and perennial life history strategies are common, perennials account for most species in nature because they survive well under year-round stresses. This proportion, however, is reversed in agriculture. Hence, perennial crops promise to likewise protect and enhance the resilience of agricultural ecosystems in response to climate change. Despite significant endeavors that have been made to generate perennial crops, progress is slow because of barriers in studying perennials, and many developed species await further improvement. Recent findings in model species have illustrated that simply rewiring existing genetic networks can lead to lifestyle variation. This implies that engineering plant life history strategy can be achieved by manipulating only a few key genes. In this review, we summarize our current understanding of genetic basis of perenniality and discuss major questions and challenges that remain to be addressed.
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Affiliation(s)
- Bo Zhao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences (CEMPS), Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai 200032, China
| | - Jia-Wei Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences (CEMPS), Institute of Plant Physiology and Ecology (SIPPE), Chinese Academy of Sciences (CAS), Shanghai 200032, China; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China; Key Laboratory of Plant Carbon Capture, CAS, Shanghai 200032, China; New Cornerstone Science Laboratory, Shanghai 200032, China.
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7
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Chang CY, Unda F, Mansfield SD, Ensminger I. Rapid response of nonstructural carbohydrate allocation and photosynthesis to short photoperiod, low temperature, or elevated CO 2 in Pinus strobus. PHYSIOLOGIA PLANTARUM 2023; 175:e14095. [PMID: 38148184 DOI: 10.1111/ppl.14095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 10/16/2023] [Accepted: 10/24/2023] [Indexed: 12/28/2023]
Abstract
During autumn, decreasing photoperiod and temperature temporarily perturb the balance between carbon uptake and carbon demand in overwintering plants, requiring coordinated adjustments in photosynthesis and carbon allocation to re-establish homeostasis. Here we examined adjustments of photosynthesis and allocation of nonstructural carbohydrates (NSCs) following a sudden shift to short photoperiod, low temperature, and/or elevated CO2 in Pinus strobus seedlings. Seedlings were initially acclimated to 14 h photoperiod (22/15°C day/night) and ambient CO2 (400 ppm) or elevated CO2 (800 ppm). Seedlings were then shifted to 8 h photoperiod for one of three treatments: no temperature change at ambient CO2 (22/15°C, 400 ppm), low temperature at ambient CO2 (12/5°C, 400 ppm), or no temperature change at elevated CO2 (22/15°C, 800 ppm). Short photoperiod caused all seedlings to exhibit partial nighttime depletion of starch. Short photoperiod alone did not affect photosynthesis. Short photoperiod combined with low temperature caused hexose accumulation and repression of photosynthesis within 24 h, followed by a transient increase in nonphotochemical quenching (NPQ). Under long photoperiod, plants grown under elevated CO2 exhibited significantly higher NSCs and photosynthesis compared to ambient CO2 plants, but carbon uptake exceeded sink capacity, leading to elevated NPQ; carbon sink capacity was restored and NPQ relaxed within 24 h after shift to short photoperiod. Our findings indicate that P. strobus rapidly adjusts NSC allocation, not photosynthesis, to accommodate short photoperiod. However, the combination of short photoperiod and low temperature, or long photoperiod and elevated CO2 disrupts the balance between photosynthesis and carbon sink capacity, resulting in increased NPQ to alleviate excess energy.
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Affiliation(s)
- Christine Y Chang
- Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada
- Graduate Department of Cell & Systems Biology, University of Toronto, Toronto, ON, Canada
| | - Faride Unda
- Department of Wood Science, University of British Columbia, Vancouver, BC, Canada
| | - Shawn D Mansfield
- Department of Wood Science, University of British Columbia, Vancouver, BC, Canada
- Department of Botany, University of British Columbia, Vancouver, BC, Canada
| | - Ingo Ensminger
- Department of Biology, University of Toronto Mississauga, Mississauga, ON, Canada
- Graduate Department of Cell & Systems Biology, University of Toronto, Toronto, ON, Canada
- Graduate Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada
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8
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Wood structure explained by complex spatial source-sink interactions. Nat Commun 2022; 13:7824. [PMID: 36535928 PMCID: PMC9763502 DOI: 10.1038/s41467-022-35451-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 12/04/2022] [Indexed: 12/23/2022] Open
Abstract
Wood is a remarkable material with great cultural, economic, and biogeochemical importance. However, our understanding of its formation is poor. Key properties that have not been explained include the anatomy of growth rings (with consistent transitions from low-density earlywood to high density latewood), strong temperature-dependence of latewood density (used for historical temperature reconstructions), the regulation of cell size, and overall growth-temperature relationships in conifer and ring-porous tree species. We have developed a theoretical framework based on observations on Pinus sylvestris L. in northern Sweden. The observed anatomical properties emerge from our framework as a consequence of interactions in time and space between the production of new cells, the dynamics of developmental zone widths, and the distribution of carbohydrates across the developing wood. Here we find that the diffusion of carbohydrates is critical to determining final ring anatomy, potentially overturning current understanding of how wood formation responds to environmental variability and transforming our interpretation of tree rings as proxies of past climates.
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9
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Eckes-Shephard AH, Ljungqvist FC, Drew DM, Rathgeber CBK, Friend AD. Wood Formation Modeling - A Research Review and Future Perspectives. FRONTIERS IN PLANT SCIENCE 2022; 13:837648. [PMID: 35401628 PMCID: PMC8984029 DOI: 10.3389/fpls.2022.837648] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 01/24/2022] [Indexed: 05/29/2023]
Abstract
Wood formation has received considerable attention across various research fields as a key process to model. Historical and contemporary models of wood formation from various disciplines have encapsulated hypotheses such as the influence of external (e.g., climatic) or internal (e.g., hormonal) factors on the successive stages of wood cell differentiation. This review covers 17 wood formation models from three different disciplines, the earliest from 1968 and the latest from 2020. The described processes, as well as their external and internal drivers and their level of complexity, are discussed. This work is the first systematic cataloging, characterization, and process-focused review of wood formation models. Remaining open questions concerning wood formation processes are identified, and relate to: (1) the extent of hormonal influence on the final tree ring structure; (2) the mechanism underlying the transition from earlywood to latewood in extratropical regions; and (3) the extent to which carbon plays a role as "active" driver or "passive" substrate for growth. We conclude by arguing that wood formation models remain to be fully exploited, with the potential to contribute to studies concerning individual tree carbon sequestration-storage dynamics and regional to global carbon sequestration dynamics in terrestrial vegetation models.
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Affiliation(s)
| | - Fredrik Charpentier Ljungqvist
- Department of History, Stockholm University, Stockholm, Sweden
- Bolin Centre for Climate Research, Stockholm University, Stockholm, Sweden
- Swedish Collegium for Advanced Study, Uppsala, Sweden
| | - David M. Drew
- Department of Forest and Wood Science, Stellenbosch University, Stellenbosch, South Africa
| | - Cyrille B. K. Rathgeber
- Université de Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
- Swiss Federal Research Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Andrew D. Friend
- Department of Geography, University of Cambridge, Cambridge, United Kingdom
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Bevacqua D, Melià P, Cividini M, Mattioli F, Lescourret F, Génard M, Casagrandi R. A parsimonious mechanistic model of reproductive and vegetative growth in fruit trees predicts consequences of fruit thinning and branch pruning. TREE PHYSIOLOGY 2021; 41:1794-1807. [PMID: 33847363 DOI: 10.1093/treephys/tpab050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 03/11/2021] [Accepted: 04/07/2021] [Indexed: 06/12/2023]
Abstract
Productivity of fruit tree crops depends on the interaction between plant physiology, environmental conditions and agricultural practices. We develop a mechanistic model of fruit tree crops that reliable simulates the dynamics of variables of interest for growers and consequences of agricultural practices while relying on a minimal number of inputs and parameters. The temporal dynamics of carbon content in the different organs (i.e., shoots-S, roots-R and fruits-F) are the result of photosynthesis by S, nutrient supply by R, respiration by S, R and F, competition among different organs, photoperiod and initial system conditions partially controlled by cultural practices. We calibrate model parameters and evaluate model predictions using unpublished data from a peach (Prunus persica) experimental orchard with trees subjected to different levels of branch pruning and fruit thinning. Fiinally, we evaluate the consequences of different combinations of pruning and thinning intensities within a multi-criteria analysis. The predictions are in good agreement with the experimental measurements and for the different conditions (pruning and thinning). Our simulations indicate that thinning and pruning practices actually used by growers provide the best compromise between total shoot production, which impacts next year's abundance of shoots and fruits, and current year's fruit production in terms of quantity (yield) and quality (average fruit size). This suggests that growers are not only interested in maximizing current year's yield but also in its quality and its durability. The present work provides for modelers a system of equations based on acknowledged principles of plant science easily modifiable for different purposes. For horticulturists, it gives insights on the potentialities of pruning and thinning. For ecologists, it provides a transparent quantitative framework that can be coupled with biotic and abiotic stressors.
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Affiliation(s)
- Daniele Bevacqua
- French National Research Institute for Agriculture, Food and Environment (INRAe), UR 1115 Plantes et Systèmes de Culture Horticoles, F-84914 Avignon, France
| | - Paco Melià
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, via Ponzio 34/5, 20133 Milano, Italy
| | - Martina Cividini
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, via Ponzio 34/5, 20133 Milano, Italy
| | - Francesca Mattioli
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, via Ponzio 34/5, 20133 Milano, Italy
| | - Françoise Lescourret
- French National Research Institute for Agriculture, Food and Environment (INRAe), UR 1115 Plantes et Systèmes de Culture Horticoles, F-84914 Avignon, France
| | - Michel Génard
- French National Research Institute for Agriculture, Food and Environment (INRAe), UR 1115 Plantes et Systèmes de Culture Horticoles, F-84914 Avignon, France
| | - Renato Casagrandi
- Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, via Ponzio 34/5, 20133 Milano, Italy
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11
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Vimont N, Schwarzenberg A, Domijan M, Donkpegan ASL, Beauvieux R, le Dantec L, Arkoun M, Jamois F, Yvin JC, Wigge PA, Dirlewanger E, Cortijo S, Wenden B. Fine tuning of hormonal signaling is linked to dormancy status in sweet cherry flower buds. TREE PHYSIOLOGY 2021; 41:544-561. [PMID: 32975290 DOI: 10.1093/treephys/tpaa122] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 12/10/2019] [Accepted: 09/13/2020] [Indexed: 05/21/2023]
Abstract
In temperate trees, optimal timing and quality of flowering directly depend on adequate winter dormancy progression, regulated by a combination of chilling and warm temperatures. Physiological, genetic and functional genomic studies have shown that hormones play a key role in bud dormancy establishment, maintenance and release. We combined physiological and transcriptional analyses, quantification of abscisic acid (ABA) and gibberellins (GAs), and modeling to further investigate how these signaling pathways are associated with dormancy progression in the flower buds of two sweet cherry cultivars. Our results demonstrated that GA-associated pathways have distinct functions and may be differentially related with dormancy. In addition, ABA levels rise at the onset of dormancy, associated with enhanced expression of ABA biosynthesis PavNCED genes, and decreased prior to dormancy release. Following the observations that ABA levels are correlated with dormancy depth, we identified PavUG71B6, a sweet cherry UDP-GLYCOSYLTRANSFERASE gene that up-regulates active catabolism of ABA to ABA glucosyl ester (ABA-GE) and may be associated with low ABA content in the early cultivar. Subsequently, we modeled ABA content and dormancy behavior in three cultivars based on the expression of a small set of genes regulating ABA levels. These results strongly suggest the central role of ABA pathway in the control of dormancy progression and open up new perspectives for the development of molecular-based phenological modeling.
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Affiliation(s)
- Noémie Vimont
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
- Agro Innovation International - Centre Mondial d'Innovation - Groupe Roullier, 35400 St Malo, France
- The Sainsbury Laboratory, University of Cambridge, Bateman St., Cambridge CB2 1LR, United Kingdom
| | - Adrian Schwarzenberg
- Agro Innovation International - Centre Mondial d'Innovation - Groupe Roullier, 35400 St Malo, France
| | - Mirela Domijan
- Dept. of Mathematical Sciences, University of Liverpool, Peach St., Liverpool L69 7ZL, United Kingdom
| | - Armel S L Donkpegan
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Rémi Beauvieux
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Loïck le Dantec
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Mustapha Arkoun
- Agro Innovation International - Centre Mondial d'Innovation - Groupe Roullier, 35400 St Malo, France
| | - Frank Jamois
- Agro Innovation International - Centre Mondial d'Innovation - Groupe Roullier, 35400 St Malo, France
| | - Jean-Claude Yvin
- Agro Innovation International - Centre Mondial d'Innovation - Groupe Roullier, 35400 St Malo, France
| | - Philip A Wigge
- Leibniz-Institut für Gemüse- und Zierpflanzenbau (IGZ), Department for Plant Adaptation, Theodor-Echtermeyer-Weg 1, 14979 Groβbeeren, Germany
| | - Elisabeth Dirlewanger
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
| | - Sandra Cortijo
- The Sainsbury Laboratory, University of Cambridge, Bateman St., Cambridge CB2 1LR, United Kingdom
| | - Bénédicte Wenden
- Univ. Bordeaux, INRAE, Biologie du Fruit et Pathologie, UMR 1332, av. Edouard Bourlaux, 33140 Villenave d'Ornon, France
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12
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Ettinger AK, Buonaiuto DM, Chamberlain CJ, Morales-Castilla I, Wolkovich EM. Spatial and temporal shifts in photoperiod with climate change. THE NEW PHYTOLOGIST 2021; 230:462-474. [PMID: 33421152 DOI: 10.1111/nph.17172] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 12/08/2020] [Indexed: 05/28/2023]
Abstract
Climate change causes both temporal (e.g. advancing spring phenology) and geographic (e.g. range expansion poleward) species shifts, which affect the photoperiod experienced at critical developmental stages ('experienced photoperiod'). As photoperiod is a common trigger of seasonal biological responses - affecting woody plant spring phenology in 87% of reviewed studies that manipulated photoperiod - shifts in experienced photoperiod may have important implications for future plant distributions and fitness. However, photoperiod has not been a focus of climate change forecasting to date, especially for early-season ('spring') events, often assumed to be driven by temperature. Synthesizing published studies, we find that impacts on experienced photoperiod from temporal shifts could be orders of magnitude larger than from spatial shifts (1.6 h of change for expected temporal vs 1 min for latitudinal shifts). Incorporating these effects into forecasts is possible by leveraging existing experimental data; we show that results from growth chamber experiments on woody plants often have data relevant for climate change impacts, and suggest that shifts in experienced photoperiod may increasingly constrain responses to additional warming. Further, combining modeling approaches and empirical work on when, where and how much photoperiod affects phenology could rapidly advance our understanding and predictions of future spatio-temporal shifts from climate change.
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Affiliation(s)
- A K Ettinger
- The Nature Conservancy, Washington Field Office, Seattle, WA, 98121, USA
- Arnold Arboretum of Harvard University, Boston, MA, 02130, USA
| | - D M Buonaiuto
- Arnold Arboretum of Harvard University, Boston, MA, 02130, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
| | - C J Chamberlain
- Arnold Arboretum of Harvard University, Boston, MA, 02130, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
| | - I Morales-Castilla
- Arnold Arboretum of Harvard University, Boston, MA, 02130, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
- Global Change Ecology and Evolution (GloCEE) Research Group, Department of Life Sciences, University of Alcalá, Alcalá de Henares, MA, 28805, Spain
- Department of Environmental Science and Policy, George Mason University, Fairfax, VA, 22030, USA
| | - E M Wolkovich
- Arnold Arboretum of Harvard University, Boston, MA, 02130, USA
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
- Forest & Conservation Sciences, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
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13
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Li Z, Liu N, Zhang W, Wu C, Jiang Y, Ma J, Li M, Sui S. Integrated transcriptome and proteome analysis provides insight into chilling-induced dormancy breaking in Chimonanthus praecox. HORTICULTURE RESEARCH 2020; 7:198. [PMID: 33328461 PMCID: PMC7704649 DOI: 10.1038/s41438-020-00421-x] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 09/14/2020] [Accepted: 09/16/2020] [Indexed: 05/06/2023]
Abstract
Chilling has a critical role in the growth and development of perennial plants. The chilling requirement (CR) for dormancy breaking largely depends on the species. However, global warming is expected to negatively affect chilling accumulation and dormancy release in a wide range of perennial plants. Here, we used Chimonanthus praecox as a model to investigate the CR for dormancy breaking under natural and artificial conditions. We determined the minimum CR (570 chill units, CU) needed for chilling-induced dormancy breaking and analyzed the transcriptomes and proteomes of flowering and non-flowering flower buds (FBs, anther and ovary differentiation completed) with different CRs. The concentrations of ABA and GA3 in the FBs were also determined using HPLC. The results indicate that chilling induced an upregulation of ABA levels and significant downregulation of SHORT VEGETATIVE PHASE (SVP) and FLOWERING LOCUS T (FT) homologs at the transcript level in FBs when the accumulated CR reached 570 CU (IB570) compared to FBs in November (FB.Nov, CK) and nF16 (non-flowering FBs after treatment at 16 °C for -300 CU), which suggested that dormancy breaking of FBs could be regulated by the ABA-mediated SVP-FT module. Overexpression in Arabidopsis was used to confirm the function of candidate genes, and early flowering was induced in 35S::CpFT1 transgenic lines. Our data provide insight into the minimum CR (570 CU) needed for chilling-induced dormancy breaking and its underlying regulatory mechanism in C. praecox, which provides a new tool for the artificial regulation of flowering time and a rich gene resource for controlling chilling-induced blooming.
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Affiliation(s)
- Zhineng Li
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Ning Liu
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Wei Zhang
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Chunyu Wu
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Yingjie Jiang
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Jing Ma
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Mingyang Li
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China
| | - Shunzhao Sui
- Key Laboratory of Horticulture Science for Southern Mountains Regions, Ministry of Education, Chongqing Engineering Research Center for Floriculture, College of Horticulture and Landscape Architecture, Southwest University, 400715, Chongqing, China.
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Small fluctuations in cell wall thickness in pine and spruce xylem: Signal from cambium? PLoS One 2020; 15:e0233106. [PMID: 32437374 PMCID: PMC7241711 DOI: 10.1371/journal.pone.0233106] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 04/28/2020] [Indexed: 11/19/2022] Open
Abstract
In the conifer tree rings, each tracheid goes through three phases of differentiation before becoming an element of the stem water-conducting structure: division, extension, and cell wall thickening. These phases are long-lasting and separated temporally, especially cell wall thickening. Despite the numerous lines of evidence that external conditions affect the rate of growth processes and the final anatomical dimensions during the respective phases of tracheid differentiation, the influence of the environment on anatomical dimensions during the cell division phase (cambial activity) has not yet been experimentally confirmed. In this communication, we provide indirect evidence of such an effect through observations of the small fluctuations in the latewood cell wall thickness of rapidly growing tree rings, which exhibit a high cell production rate (more than 0.4 cells per day on average). Such small fluctuations in the cell wall thickness cannot be driven by variations in external factors during the secondary wall deposition phase, since this phase overlaps for several tens of latewood cells in the rings of fast-growing trees due to its long duration.
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15
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Abstract
How do perennial plants adapt their growth to seasonal changes? A new study in the hybrid aspen reveals that, in short days, repression of a growth-promoting genetic pathway leads to upregulation of the BRANCHED1 genes, which in turn induce growth cessation.
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Affiliation(s)
- Pilar Cubas
- Plant Molecular Genetics Department, Centro Nacional de Biotecnología-CSIC, Campus Universidad Autónoma de Madrid, Madrid, Spain.
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16
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De La Torre AR, Piot A, Liu B, Wilhite B, Weiss M, Porth I. Functional and morphological evolution in gymnosperms: A portrait of implicated gene families. Evol Appl 2020; 13:210-227. [PMID: 31892953 PMCID: PMC6935586 DOI: 10.1111/eva.12839] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Revised: 04/25/2019] [Accepted: 07/02/2019] [Indexed: 12/12/2022] Open
Abstract
Gymnosperms diverged from their sister plant clade of flowering plants 300 Mya. Morphological and functional divergence between the two major seed plant clades involved significant changes in their reproductive biology, water-conducting systems, secondary metabolism, stress defense mechanisms, and small RNA-mediated epigenetic silencing. The relatively recent sequencing of several gymnosperm genomes and the development of new genomic resources have enabled whole-genome comparisons within gymnosperms, and between angiosperms and gymnosperms. In this paper, we aim to understand how genes and gene families have contributed to the major functional and morphological differences in gymnosperms, and how this information can be used for applied breeding and biotechnology. In addition, we have analyzed the angiosperm versus gymnosperm evolution of the pleiotropic drug resistance (PDR) gene family with a wide range of functionalities in plants' interaction with their environment including defense mechanisms. Some of the genes reviewed here are newly studied members of gene families that hold potential for biotechnological applications related to commercial and pharmacological value. Some members of conifer gene families can also be exploited for their potential in phytoremediation applications.
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Affiliation(s)
| | - Anthony Piot
- Department of Wood and Forest SciencesLaval UniversityQuebec CityQuebecCanada
- Institute for System and Integrated Biology (IBIS)Laval UniversityQuebec CityQuebecCanada
- Centre for Forest Research (CEF)Laval UniversityQuebec CityQuebecCanada
| | - Bobin Liu
- School of ForestryNorthern Arizona UniversityFlagstaffAZUSA
- College of ForestryFujian Agricultural and Forestry UniversityFuzhouFujianChina
| | | | - Matthew Weiss
- School of ForestryNorthern Arizona UniversityFlagstaffAZUSA
| | - Ilga Porth
- Department of Wood and Forest SciencesLaval UniversityQuebec CityQuebecCanada
- Institute for System and Integrated Biology (IBIS)Laval UniversityQuebec CityQuebecCanada
- Centre for Forest Research (CEF)Laval UniversityQuebec CityQuebecCanada
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17
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Wang R, Zhu L, Zhang Y, Fan J, Li L. Genome-wide analysis of poplar NF-YB gene family and identified PtNF-YB1 important in regulate flowering timing in transgenic plants. BMC PLANT BIOLOGY 2019; 19:251. [PMID: 31185907 PMCID: PMC6560884 DOI: 10.1186/s12870-019-1863-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Accepted: 06/03/2019] [Indexed: 05/13/2023]
Abstract
BACKGROUND Compared with annual herbaceous plants, woody perennials require a longer period of juvenile phase to flowering, and many traits can be only expressed in adulthood, which seriously makes the breeding efficiency of new varieties slower. For the study of poplar early flowering, the main focus is on the study Arabidopsis homologue gene CO/FT. Based on studies of Arabidopsis, rice and other plant species, some important research progress has been made on the regulation of flowering time by NF-Y subunits. However, little is known about the function of NF-Y regulating flowering in poplar. RESULTS In the present study, we have identified PtNF-YB family members in poplar and focus on the function of the PtNF-YB1 regulate flowering timing using transgenic Arabidopsis and tomato. To understand this mechanisms, the expression levels of three known flowering genes (CO, FT and SOC1) were examined with RT-PCR in transgenic Arabidopsis. We used the Y2H and BiFC to assay the interactions between PtNF-YB1 and PtCO (PtCO1 and PtCO2) proteins. Finally, the potential molecular mechanism model in which PtNF-YB1 play a role in regulating flowering in poplar was discussed. CONCLUSIONS In this study, we have characterized the poplar NF-YB gene family and confirmed the function of the PtNF-YB1 regulate flowering timing. At the same time, we found that the function of PtNF-YB1 to improve early flowering can overcome species barriers. Therefore, PtNF-YB1 can be used as a potential candidate gene to improve early flowering by genetic transformation in poplar and other crops.
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Affiliation(s)
- Rongkai Wang
- College of Forestry, Northwest A&F University, Yangling, 712100, China
| | - Ling Zhu
- College of Forestry, Northwest A&F University, Yangling, 712100, China
| | - Yi Zhang
- College of Forestry, Northwest A&F University, Yangling, 712100, China
| | - Junfeng Fan
- College of Forestry, Northwest A&F University, Yangling, 712100, China
| | - Lingli Li
- College of Forestry, Northwest A&F University, Yangling, 712100, China.
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18
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Delpierre N, Lireux S, Hartig F, Camarero JJ, Cheaib A, Čufar K, Cuny H, Deslauriers A, Fonti P, Gričar J, Huang JG, Krause C, Liu G, de Luis M, Mäkinen H, Del Castillo EM, Morin H, Nöjd P, Oberhuber W, Prislan P, Rossi S, Saderi SM, Treml V, Vavrick H, Rathgeber CBK. Chilling and forcing temperatures interact to predict the onset of wood formation in Northern Hemisphere conifers. GLOBAL CHANGE BIOLOGY 2019; 25:1089-1105. [PMID: 30536724 DOI: 10.1111/gcb.14539] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Accepted: 11/04/2018] [Indexed: 05/17/2023]
Abstract
The phenology of wood formation is a critical process to consider for predicting how trees from the temperate and boreal zones may react to climate change. Compared to leaf phenology, however, the determinism of wood phenology is still poorly known. Here, we compared for the first time three alternative ecophysiological model classes (threshold models, heat-sum models and chilling-influenced heat-sum models) and an empirical model in their ability to predict the starting date of xylem cell enlargement in spring, for four major Northern Hemisphere conifers (Larix decidua, Pinus sylvestris, Picea abies and Picea mariana). We fitted models with Bayesian inference to wood phenological data collected for 220 site-years over Europe and Canada. The chilling-influenced heat-sum model received most support for all the four studied species, predicting validation data with a 7.7-day error, which is within one day of the observed data resolution. We conclude that both chilling and forcing temperatures determine the onset of wood formation in Northern Hemisphere conifers. Importantly, the chilling-influenced heat-sum model showed virtually no spatial bias whichever the species, despite the large environmental gradients considered. This suggests that the spring onset of wood formation is far less affected by local adaptation than by environmentally driven plasticity. In a context of climate change, we therefore expect rising winter-spring temperature to exert ambivalent effects on the spring onset of wood formation, tending to hasten it through the accumulation of forcing temperature, but imposing a higher forcing temperature requirement through the lower accumulation of chilling.
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Affiliation(s)
- Nicolas Delpierre
- Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
| | - Ségolène Lireux
- Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
| | - Florian Hartig
- Theoretical Ecology, University of Regensburg, Regensburg, Germany
| | | | - Alissar Cheaib
- Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
- Département des Sciences de la Vie et de la Terre, Faculté des Sciences - Section IV, Université libanaise Hoch Al Oumara, Zahlé, Liban
| | - Katarina Čufar
- Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Henri Cuny
- Institut National de l'Information Géographique et Forestière (IGN), Champigneulles, France
| | - Annie Deslauriers
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
| | - Patrick Fonti
- Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
| | | | - Jian-Guo Huang
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems of the Chinese Academy of Sciences, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden of the Chinese Academy of Sciences, Guangzhou, China
| | - Cornelia Krause
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
| | - Guohua Liu
- Ecologie Systématique Evolution, Univ. Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Orsay, France
- College of Urban and Environmental Sciences, Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, China
| | - Martin de Luis
- Department of Geography and Regional Planning, University of Zaragoza, Zaragoza, Spain
| | | | | | - Hubert Morin
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
| | - Pekka Nöjd
- Natural Resources Institute Finland, Espoo, Finland
| | - Walter Oberhuber
- Department of Botany, University of Innsbruck, Innsbruck, Austria
| | | | - Sergio Rossi
- Département des Sciences Fondamentales, Université du Québec à Chicoutimi, Chicoutimi, QC, Canada
- Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems of the Chinese Academy of Sciences, Guangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden of the Chinese Academy of Sciences, Guangzhou, China
| | | | - Vaclav Treml
- Department of Physical Geography and Geoecology, Faculty of Science, Charles University, Prague, Czech Republic
| | - Hanus Vavrick
- Department of Wood Science, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czech Republic
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Conde D, Perales M, Sreedasyam A, Tuskan GA, Lloret A, Badenes ML, González-Melendi P, Ríos G, Allona I. Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification. FRONTIERS IN PLANT SCIENCE 2019; 10:412. [PMID: 31024588 PMCID: PMC6459980 DOI: 10.3389/fpls.2019.00412] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2018] [Accepted: 03/19/2019] [Indexed: 05/21/2023]
Abstract
In temperate and boreal regions, perennial trees arrest cell division in their meristematic tissues during winter dormancy until environmental conditions become appropriate for their renewed growth. Release from the dormant state requires exposure to a period of chilling temperatures similar to the vernalization required for flowering in Arabidopsis. Over the past decade, genomic DNA (gDNA) methylation and transcriptome studies have revealed signatures of chromatin regulation during active growth and winter dormancy. To date, only a few chromatin modification genes, as candidate regulators of these developmental stages, have been functionally characterized in trees. In this work, we summarize the major findings of the chromatin-remodeling role during growth-dormancy cycles and we explore the transcriptional profiling of vegetative apical bud and stem tissues during dormancy. Finally, we discuss genetic strategies designed to improve the growth and quality of forest trees.
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Affiliation(s)
- Daniel Conde
- Centro de Biotecnología y Genómica de Plantas, Instituto de Investigación y Tecnología Agraria y Alimentaria, Universidad Politécnica de Madrid, Madrid, Spain
| | - Mariano Perales
- Centro de Biotecnología y Genómica de Plantas, Instituto de Investigación y Tecnología Agraria y Alimentaria, Universidad Politécnica de Madrid, Madrid, Spain
| | | | - Gerald A. Tuskan
- Oak Ridge National Laboratory, Center for Bioenergy Innovation, Oak Ridge, TN, United States
| | - Alba Lloret
- Instituto Valenciano de Investigaciones Agrarias, Moncada, Spain
| | - María L. Badenes
- Instituto Valenciano de Investigaciones Agrarias, Moncada, Spain
| | - Pablo González-Melendi
- Centro de Biotecnología y Genómica de Plantas, Instituto de Investigación y Tecnología Agraria y Alimentaria, Universidad Politécnica de Madrid, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Madrid, Spain
| | - Gabino Ríos
- Instituto Valenciano de Investigaciones Agrarias, Moncada, Spain
| | - Isabel Allona
- Centro de Biotecnología y Genómica de Plantas, Instituto de Investigación y Tecnología Agraria y Alimentaria, Universidad Politécnica de Madrid, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Madrid, Spain
- *Correspondence: Isabel Allona, orcid.org/0000-0002-7012-2850
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20
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Artlip T, McDermaid A, Ma Q, Wisniewski M. Differential gene expression in non-transgenic and transgenic "M.26" apple overexpressing a peach CBF gene during the transition from eco-dormancy to bud break. HORTICULTURE RESEARCH 2019; 6:86. [PMID: 31666956 PMCID: PMC6804898 DOI: 10.1038/s41438-019-0168-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 05/16/2019] [Accepted: 05/22/2019] [Indexed: 05/13/2023]
Abstract
The CBF signal pathway is responsible for a significant portion of plant responses to low temperature and freezing. Overexpression of CBF genes in model organisms such as Arabidopsis thaliana enhances abiotic stress tolerance but also reduces growth. In addition to these effects, overexpression of the peach (Prunus persica [L.] Batsch) CBF1 gene in transgenic apple (Malus x domestica Borkh.) line T166 also results in early entry into and late exit from dormancy. Although the regulation of dormancy-induction and dormancy-release occur while the CBF regulon is operative in perennial, woody plants, how overexpression of CBF1 affects these dormancy-related changes in gene expression is incompletely understood. The objective of the present study was to characterize global changes in gene expression in peach CBF1-overexpressing and non-transformed apple bark tissues at different states of dormancy via RNA-seq. RNA-seq bioinformatics data was confirmed by RT-qPCR on a number of genes. Results indicate that the greatest number of significantly differentially expressed genes (DEGs) occurred in April when dormancy release and bud break normally occur but are delayed in Line T166. Genes involved in storage and inactivation of auxin, GA, and cytokinin were generally upregulated in T166 in April, while those for biosynthesis, uptake or signal transduction were generally downregulated in T166. Genes for cell division and cambial growth were also downregulated in T166 relative to the non-transformed line. These data suggest that overexpression of the peach CBF1 gene impacts growth hormone homeostasis and as a result the activation of growth in the spring, and most likely growth cessation in the fall as well.
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Affiliation(s)
- Timothy Artlip
- USDA-ARS-Appalachian Fruit Research Station, Kearneysville, WV 25430 USA
| | - Adam McDermaid
- Agronomy, Horticulture & Plant Science, South Dakota State University, Brookings, SD 57007 USA
- Present Address: Imagenetics, Sanford Health, Sioux Falls, SD 57007 USA
| | - Qin Ma
- Agronomy, Horticulture & Plant Science, South Dakota State University, Brookings, SD 57007 USA
- Present Address: SBS-Biomedical Informatics, The Ohio State University, Columbus, OH 43210 USA
| | - Michael Wisniewski
- USDA-ARS-Appalachian Fruit Research Station, Kearneysville, WV 25430 USA
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Ding J, Böhlenius H, Rühl MG, Chen P, Sane S, Zambrano JA, Zheng B, Eriksson ME, Nilsson O. GIGANTEA-like genes control seasonal growth cessation in Populus. THE NEW PHYTOLOGIST 2018. [PMID: 29532940 DOI: 10.1111/nph.15087] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Survival of trees growing in temperate zones requires cycling between active growth and dormancy. This involves growth cessation in the autumn triggered by a photoperiod shorter than the critical day length. Variations in GIGANTEA (GI)-like genes have been associated with phenology in a range of different tree species, but characterization of the functions of these genes in the process is still lacking. We describe the identification of the Populus orthologs of GI and their critical role in short-day-induced growth cessation. Using ectopic expression and silencing, gene expression analysis, protein interaction and chromatin immunoprecipitation experiments, we show that PttGIs are likely to act in a complex with PttFKF1s (FLAVIN-BINDING, KELCH REPEAT, F-BOX 1) and PttCDFs (CYCLING DOF FACTOR) to control the expression of PttFT2, the key gene regulating short-day-induced growth cessation in Populus. In contrast to Arabidopsis, in which the GI-CONSTANS (CO)-FLOWERING LOCUS T (FT) regulon is a crucial day-length sensor for flowering time, our study suggests that, in Populus, PttCO-independent regulation of PttFT2 by PttGI is more important in the photoperiodic control of growth cessation and bud set.
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Affiliation(s)
- Jihua Ding
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Henrik Böhlenius
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, 230 53, Alnarp, Sweden
| | - Mark Georg Rühl
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Peng Chen
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, China
| | - Shashank Sane
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Jose A Zambrano
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
| | - Bo Zheng
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, College of Horticulture and Forestry, Huazhong Agricultural University, 430070, Wuhan, China
| | - Maria E Eriksson
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 901 87, Umeå, Sweden
| | - Ove Nilsson
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, 901 83, Umeå, Sweden
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Peyhardi J, Caraglio Y, Costes E, Lauri PÉ, Trottier C, Guédon Y. Integrative models for joint analysis of shoot growth and branching patterns. THE NEW PHYTOLOGIST 2017; 216:1291-1304. [PMID: 28892159 DOI: 10.1111/nph.14742] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 07/09/2017] [Indexed: 06/07/2023]
Abstract
Plants exhibit dependences between shoot growth and branching that generate highly structured patterns. The characterization of the patterning mechanism is still an open issue because of the developmental processes involved with both succession of events (e.g. internode elongation, axillary shoot initiation and elongation) and complex dependences among neighbouring positions along the parent shoot. Statistical models called semi-Markov switching partitioned conditional generalized linear models were built on the basis of apple and pear tree datasets. In these models, the semi-Markov chain represents both the succession and lengths of branching zones, whereas the partitioned conditional generalized linear models represent the influence of parent shoot growth variables on axillary productions within each branching zone. Parent shoot growth variables were shown to influence specific developmental events. On this basis, the growth and branching patterns of two apple tree (Malus domestica) cultivars, as well as of pear trees (Pyrus spinosa) between two successive growing cycles, were compared. The proposed integrative statistical models were able to decipher the roles of successive developmental events in the growth and branching patterning mechanisms. These models could incorporate other parent shoot explanatory variables, such as the local curvature or the maximum growth rate of the leaf.
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Affiliation(s)
- Jean Peyhardi
- CIRAD, UMR AGAP and Inria, Virtual Plants, 34095, Montpellier, France
- Université de Montpellier, Institut Montpelliérain Alexander Grothendieck, 34095, Montpellier, France
| | | | | | | | - Catherine Trottier
- Université de Montpellier, Institut Montpelliérain Alexander Grothendieck, 34095, Montpellier, France
| | - Yann Guédon
- CIRAD, UMR AGAP and Inria, Virtual Plants, 34095, Montpellier, France
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23
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Chuine I, Régnière J. Process-Based Models of Phenology for Plants and Animals. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2017. [DOI: 10.1146/annurev-ecolsys-110316-022706] [Citation(s) in RCA: 115] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Phenology is a key aspect of plant and animal life strategies that determines the ability to capture seasonally variable resources. It defines the season and duration of growth and reproduction and paces ecological interactions and ecosystem functions. Phenology models have become a key component of models in agronomy, forestry, ecology, and biogeosciences. Plant and animal process-based phenology models have taken different paths that have so far not crossed. Yet, they share many features because plant and animal annual cycles also share many characteristics, from their stepwise progression, including a resting period, to their dependence on similar environmental factors. We review the strengths and shortcomings of these models and the divergences in modeling approaches for plants and animals, which are mostly due to specificities of the questions they tackle. Finally, we discuss the most promising avenues and the challenges phenology modeling needs to address in the upcoming years.
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Affiliation(s)
- Isabelle Chuine
- Centre d'Ecologie Fonctionnelle et Evolutive, UMR 5175 Centre National de la Recherche Scientifique—Université de Montpellier—Université Paul-Valéry Montpellier—EPHE, 34293, Montpellier, France
| | - Jacques Régnière
- Natural Resources Canada, Canadian Forest Service, Québec, Québec, G1V 4C7 Canada
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24
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Conde D, Moreno-Cortés A, Dervinis C, Ramos-Sánchez JM, Kirst M, Perales M, González-Melendi P, Allona I. Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar. PLANT, CELL & ENVIRONMENT 2017; 40:2806-2819. [PMID: 28810288 DOI: 10.1111/pce.13056] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2017] [Revised: 07/26/2017] [Accepted: 08/11/2017] [Indexed: 05/21/2023]
Abstract
The transition from active growth to dormancy is critical for the survival of perennial plants. We identified a DEMETER-like (CsDML) cDNA from a winter-enriched cDNA subtractive library in chestnut (Castanea sativa Mill.), an economically and ecologically important species. Next, we characterized this DNA demethylase and its putative ortholog in the more experimentally tractable hybrid poplar (Populus tremula × alba), under the signals that trigger bud dormancy in trees. We performed phylogenetic and protein sequence analysis, gene expression profiling, and 5-methyl-cytosine methylation immunodetection studies to evaluate the role of CsDML and its homolog in poplar, PtaDML6. Transgenic hybrid poplars overexpressing CsDML were produced and analysed. Short days and cold temperatures induced CsDML and PtaDML6. Overexpression of CsDML accelerated short-day-induced bud formation, specifically from Stages 1 to 0. Buds acquired a red-brown coloration earlier than wild-type plants, alongside with the up-regulation of flavonoid biosynthesis enzymes and accumulation of flavonoids in the shoot apical meristem and bud scales. Our data show that the CsDML gene induces bud formation needed for the survival of the apical meristem under the harsh conditions of winter.
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Affiliation(s)
- Daniel Conde
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Alicia Moreno-Cortés
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Christopher Dervinis
- School of Forest Resources and Conservation, University of Florida, Gainesville, FL, 32611, USA
| | - José M Ramos-Sánchez
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Matias Kirst
- School of Forest Resources and Conservation, University of Florida, Gainesville, FL, 32611, USA
- University of Florida Genetics Institute, University of Florida, Gainesville, FL, 32611, USA
| | - Mariano Perales
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
| | - Pablo González-Melendi
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid (UPM), 28040, Madrid, Spain
| | - Isabel Allona
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo UPM, Pozuelo de Alarcón, 28223, Madrid, Spain
- Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid (UPM), 28040, Madrid, Spain
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25
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Maurya JP, Bhalerao RP. Photoperiod- and temperature-mediated control of growth cessation and dormancy in trees: a molecular perspective. ANNALS OF BOTANY 2017; 120:351-360. [PMID: 28605491 PMCID: PMC5591416 DOI: 10.1093/aob/mcx061] [Citation(s) in RCA: 90] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Indexed: 05/03/2023]
Abstract
BACKGROUND How plants adapt their developmental patterns to regular seasonal changes is an important question in biology. The annual growth cycle in perennial long-lived trees is yet another example of how plants can adapt to seasonal changes. The two main signals that plants rely on to respond to seasonal changes are photoperiod and temperature, and these signals have critical roles in the temporal regulation of the annual growth cycle of trees. SCOPE This review presents the latest findings to provide insight into the molecular mechanisms that underlie how photoperiodic and temperature signals regulate seasonal growth in trees. CONCLUSION The results point to a high level of conservation in the signalling pathways that mediate photoperiodic control of seasonal growth in trees and flowering in annual plants such as arabidopsis. Furthermore, the data indicate that symplastic communication may mediate certain aspects of seasonal growth. Although considerable insight into the control of phenology in model plants such as poplar and spruce has been obtained, the future challenge is extending these studies to other, non-model trees.
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Affiliation(s)
- Jay P Maurya
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
| | - Rishikesh P Bhalerao
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden
- For correspondence. E-mail
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26
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Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, Ståhl PL, Sundström JF, Street NR, Lundeberg J. Spatially resolved transcriptome profiling in model plant species. NATURE PLANTS 2017; 3:17061. [PMID: 28481330 DOI: 10.1038/nplants.2017.61] [Citation(s) in RCA: 103] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 03/31/2017] [Indexed: 05/08/2023]
Abstract
Understanding complex biological systems requires functional characterization of specialized tissue domains. However, existing strategies for generating and analysing high-throughput spatial expression profiles were developed for a limited range of organisms, primarily mammals. Here we present the first available approach to generate and study high-resolution, spatially resolved functional profiles in a broad range of model plant systems. Our process includes high-throughput spatial transcriptome profiling followed by spatial gene and pathway analyses. We first demonstrate the feasibility of the technique by generating spatial transcriptome profiles from model angiosperms and gymnosperms microsections. In Arabidopsis thaliana we use the spatial data to identify differences in expression levels of 141 genes and 189 pathways in eight inflorescence tissue domains. Our combined approach of spatial transcriptomics and functional profiling offers a powerful new strategy that can be applied to a broad range of plant species, and is an approach that will be pivotal to answering fundamental questions in developmental and evolutionary biology.
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Affiliation(s)
- Stefania Giacomello
- Division of Gene Technology, School of Biotechnology, KTH Royal Institute of Technology, Science for Life Laboratory, 17165 Solna, Sweden
- Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, 17165 Solna, Sweden
| | - Fredrik Salmén
- Division of Gene Technology, School of Biotechnology, KTH Royal Institute of Technology, Science for Life Laboratory, 17165 Solna, Sweden
| | - Barbara K Terebieniec
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90736 Umeå, Sweden
| | - Sanja Vickovic
- Division of Gene Technology, School of Biotechnology, KTH Royal Institute of Technology, Science for Life Laboratory, 17165 Solna, Sweden
| | | | - Andrey Alexeyenko
- Department of Microbiology, Tumor and Cell Biology (MTC), Karolinska Institutet, 17165 Solna, Sweden
- National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, 17121 Solna, Sweden
| | - Johan Reimegård
- Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, 75237 Uppsala, Sweden
| | - Lauren S McKee
- Division of Glycoscience, School of Biotechnology, KTH Royal Institute of Technology, AlbaNova University Centre, 11421 Stockholm, Sweden
| | - Chanaka Mannapperuma
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90736 Umeå, Sweden
| | - Vincent Bulone
- Division of Glycoscience, School of Biotechnology, KTH Royal Institute of Technology, AlbaNova University Centre, 11421 Stockholm, Sweden
- ARC Centre of Excellence in Plant and Cell Walls and School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, Urrbrae, Adelaide, South Australia 5064, Australia
| | - Patrik L Ståhl
- Department of Cell and Molecular Biology, Karolinska Institute, 17165 Solna, Sweden
| | - Jens F Sundström
- Department of Plant Biology, Uppsala BioCenter, Linnean Center for Plant Biology, Swedish University of Agricultural Sciences, 75007 Uppsala, Sweden
| | - Nathaniel R Street
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, 90736 Umeå, Sweden
| | - Joakim Lundeberg
- Division of Gene Technology, School of Biotechnology, KTH Royal Institute of Technology, Science for Life Laboratory, 17165 Solna, Sweden
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27
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Dong X, Jiang X, Kuang G, Wang Q, Zhong M, Jin D, Hu J. Genetic control of flowering time in woody plants: Roses as an emerging model. PLANT DIVERSITY 2017; 39:104-110. [PMID: 30159498 PMCID: PMC6112279 DOI: 10.1016/j.pld.2017.01.004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Revised: 01/25/2017] [Accepted: 01/25/2017] [Indexed: 05/11/2023]
Abstract
Genetic control of the timing of flowering in woody plants is complex and has yet to be adequately investigated due to their long life-cycle and difficulties in genetic modification. Studies in Populus, one of the best woody plant models, have revealed a highly conserved genetic network for flowering timing in annuals. However, traits like continuous flowering cannot be addressed with Populus. Roses and strawberries have relatively small, diploid genomes and feature enormous natural variation. With the development of new genetic populations and genomic tools, roses and strawberries have become good models for studying the molecular mechanisms underpinning the regulation of flowering in woody plants. Here, we review findings on the molecular and genetic factors controlling continuous flowering in roses and woodland strawberries. Natural variation at TFL1 orthologous genes in both roses and strawberries seems be the key plausible factor that regulates continuous flowering. However, recent efforts suggest that a two-recessive-loci model may explain the controlling of continuous flowering in roses. We propose that epigenetic factors, including non-coding RNAs or chromatin-related factors, might also play a role. Insights into the genetic control of flowering time variation in roses should benefit the development of new germplasm for woody crops and shed light on the molecular genetic bases for the production and maintenance of plant biodiversity.
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Affiliation(s)
- Xue Dong
- Group of Plant Molecular Genetics and Adaptation, Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences. Lanhei Road 132, Heilongtan, Kunming 650201, Yunnan Province, PR China
| | - Xiaodong Jiang
- Group of Plant Molecular Genetics and Adaptation, Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences. Lanhei Road 132, Heilongtan, Kunming 650201, Yunnan Province, PR China
| | - Guoqiang Kuang
- Second High School, Rongcheng 264309, Shandong Province, PR China
| | - Qingbo Wang
- Second High School, Rongcheng 264309, Shandong Province, PR China
| | - Micai Zhong
- Group of Plant Molecular Genetics and Adaptation, Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences. Lanhei Road 132, Heilongtan, Kunming 650201, Yunnan Province, PR China
| | - Dongmin Jin
- Group of Plant Molecular Genetics and Adaptation, Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences. Lanhei Road 132, Heilongtan, Kunming 650201, Yunnan Province, PR China
| | - Jinyong Hu
- Group of Plant Molecular Genetics and Adaptation, Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences. Lanhei Road 132, Heilongtan, Kunming 650201, Yunnan Province, PR China
- Corresponding author.
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28
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Singh RK, Svystun T, AlDahmash B, Jönsson AM, Bhalerao RP. Photoperiod- and temperature-mediated control of phenology in trees - a molecular perspective. THE NEW PHYTOLOGIST 2017; 213:511-524. [PMID: 27901272 DOI: 10.1111/nph.14346] [Citation(s) in RCA: 130] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 10/07/2016] [Indexed: 05/17/2023]
Abstract
Contents 511 I. 511 II. 512 III. 513 IV. 513 V. 517 VI. 517 VII. 521 VIII. 521 Acknowledgements 521 References 521 SUMMARY: Trees growing in boreal and temperate regions synchronize their growth with seasonal climatic changes in adaptive responses that are essential for their survival. These trees cease growth before the winter and establish a dormant state during which growth cessation is maintained by repression of responses to growth-promotive signals. Reactivation of growth in the spring follows the release from dormancy promoted by prolonged exposure to low temperature during the winter. The timing of the key events and regulation of the molecular programs associated with the key stages of the annual growth cycle are controlled by two main environmental cues: photoperiod and temperature. Recently, key components mediating photoperiodic control of growth cessation and bud set have been identified, and striking similarities have been observed in signaling pathways controlling growth cessation in trees and floral transition in Arabidopsis. Although less well understood, the regulation of bud dormancy and bud burst may involve cell-cell communication and chromatin remodeling. Here, we discuss current knowledge of the molecular-level regulation of the annual growth cycle of woody trees in temperate and boreal regions, and identify key questions that need to be addressed in the future.
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Affiliation(s)
- Rajesh Kumar Singh
- Department of Forest Genetics and Plant Physiology, SLU, S-901 83, Umeå, Sweden
| | - Tetiana Svystun
- Department of Physical Geography and Ecosystem Science, Lund University, Sölvegatan 12, S-223 62, Lund, Sweden
| | - Badr AlDahmash
- College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Anna Maria Jönsson
- Department of Physical Geography and Ecosystem Science, Lund University, Sölvegatan 12, S-223 62, Lund, Sweden
| | - Rishikesh P Bhalerao
- Department of Forest Genetics and Plant Physiology, SLU, S-901 83, Umeå, Sweden
- College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
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29
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Brunner AM, Varkonyi-Gasic E, Jones RC. Phase Change and Phenology in Trees. COMPARATIVE AND EVOLUTIONARY GENOMICS OF ANGIOSPERM TREES 2017. [DOI: 10.1007/7397_2016_30] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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30
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Bhalerao RP, Fischer U. Environmental and hormonal control of cambial stem cell dynamics. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:79-87. [PMID: 27965368 DOI: 10.1093/jxb/erw466] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Perennial trees have the amazing ability to adjust their growth rate to both adverse and favorable seasonally reoccurring environmental conditions over hundreds of years. In trunks and stems, the basis for the tuning of seasonal growth rate is the regulation of cambial stem cell activity. Cambial stem cell quiescence and dormancy protect the tree from potential physiological and genomic damage caused by adverse growing conditions and may permit a long lifespan. Cambial dormancy and longevity are both aspects of a tree's life for which the study of cambial stem cell behavior in the annual model plant Arabidopsis is inadequate. Recent functional analyses of hormone perception and catabolism mutants in Populus indicate that shoot-derived long-range signals, as well as local cues, steer cambial activity. Auxin is central to the regulation of cambial activity and probably also maintenance. Emerging genome editing and phenotyping technologies will enable the identification of down-stream targets of hormonal action and facilitate the genetic dissection of complex traits of cambial biology.
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Affiliation(s)
- Rishikesh P Bhalerao
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
| | - Urs Fischer
- Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University of Agricultural Sciences, Umeå, SE-90183, Sweden
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31
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Hamilton JA, El Kayal W, Hart AT, Runcie DE, Arango-Velez A, Cooke JEK. The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca). TREE PHYSIOLOGY 2016; 36:1432-1448. [PMID: 27449791 DOI: 10.1093/treephys/tpw061] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 05/23/2016] [Indexed: 06/06/2023]
Abstract
Timely responses to environmental cues enable the synchronization of phenological life-history transitions essential for the health and survival of north-temperate and boreal tree species. While photoperiodic cues will remain persistent under climate change, temperature cues may vary, contributing to possible asynchrony in signals influencing developmental and physiological transitions essential to forest health. Understanding the relative contribution of photoperiod and temperature as determinants of the transition from active growth to dormancy is important for informing adaptive forest management decisions that consider future climates. Using a combination of photoperiod (long = 20 h or short = 8 h day lengths) and temperature (warm = 22 °C/16 °C and cool = 8 °C/4 °C day/night, respectively) treatments, we used microscopy, physiology and modeling to comprehensively examine hallmark traits of the growth-dormancy transition-including bud formation, growth cessation, cold hardiness and gas exchange-within two provenances of white spruce [Picea glauca (Moench) Voss] spanning a broad latitude in Alberta, Canada. Following exposure to experimental treatments, seedlings were transferred to favorable conditions, and the depth of dormancy was assessed by determining the timing and ability of spruce seedlings to resume growth. Short photoperiods promoted bud development and growth cessation, whereas longer photoperiods extended the growing season through the induction of lammas growth. In contrast, cool temperatures under both photoperiodic conditions delayed bud development. Photoperiod strongly predicted the development of cold hardiness, whereas temperature predicted photosynthetic rates associated with active growth. White spruce was capable of attaining endodormancy, but its release was environmentally determined. Dormancy depth varied substantially across experimental treatments suggesting that environmental cues experienced within one season could affect growth in the following season, which is particularly important for a determinate species such as white spruce. The joint influence of these environmental cues points toward the importance of including local constant photoperiod and shifting temperature cues into predictive models that consider how climate change may affect northern forests.
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Affiliation(s)
- Jill A Hamilton
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Biological Sciences, North Dakota State University, Fargo, ND 58102, USA
| | - Walid El Kayal
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada N1G 2W1
| | - Ashley T Hart
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
| | - Daniel E Runcie
- Department of Plant Sciences, University of California, Davis, CA 95616, USA
| | - Adriana Arango-Velez
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
- Department of Forestry and Horticulture, The Connecticut Agricultural Experiment Station, New Haven, CT 06504, USA
| | - Janice E K Cooke
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9
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32
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Seasonal change in xylem growth of Pinus densiflora in central Japan. LANDSCAPE AND ECOLOGICAL ENGINEERING 2016. [DOI: 10.1007/s11355-016-0292-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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33
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Ding J, Nilsson O. Molecular regulation of phenology in trees-because the seasons they are a-changin'. CURRENT OPINION IN PLANT BIOLOGY 2016; 29:73-9. [PMID: 26748352 DOI: 10.1016/j.pbi.2015.11.007] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Revised: 11/05/2015] [Accepted: 11/18/2015] [Indexed: 05/05/2023]
Abstract
The perennial trees, in contrast to the much more studied annual plants, have to adapt their vegetative growth and development to the sometimes extremely contrasting environmental conditions that occur over the different seasons. Recently, studies of the molecular framework underlying this adaptation in Populus trees is reinforcing the notion that the genetic pathways controlling growth and dormancy cycles have a remarkable conservation with the pathways controlling the regulation of flowering time in annual plants. Insight into these mechanisms will be important for our understanding of how trees will respond to various future global climate scenarios.
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Affiliation(s)
- Jihua Ding
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå 901 83, Sweden
| | - Ove Nilsson
- Umeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, Umeå 901 83, Sweden.
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Vergara R, Noriega X, Parada F, Dantas D, Pérez FJ. Relationship between endodormancy, FLOWERING LOCUS T and cell cycle genes in Vitis vinifera. PLANTA 2016; 243:411-419. [PMID: 26438218 DOI: 10.1007/s00425-015-2415-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2015] [Accepted: 09/22/2015] [Indexed: 06/05/2023]
Abstract
In grapevines, the increased expression of VvFT , genes involved in the photoperiodic control of seasonal growth ( VvAP1, VvAIL2 ) and cell cycle genes ( VvCDKA, VvCDKB2, VvCYCA1, VvCYCB, VvCYCD3.2 ) in the shoot apex relative to the latent bud, suggests a high mitotic activity of the apex which could prevent them to enter into endodormancy. Additionally, the up-regulation of these genes by the dormancy-breaking compound hydrogen cyanamide (H 2 CN 2 ) strongly suggests that VvFT plays a key role in regulating transcriptionally cell cycle genes. At the end of the growing season, short-day (SD) photoperiod induces the transition of latent grapevine buds (Vitis vinifera L) from paradormancy (PD) to endodormancy (ED), which allows them to survive the cold temperatures of winter. Meanwhile, the shoot apex gradually decreases its growth without entering into ED, and as a result of the fall of temperatures at the beginning of autumn, dies. To understand developmental differences and contrasting responses to environmental cues between both organs, the expression of cell cycle genes, and of genes involved in photoperiodic control of seasonal growth in trees, such as FLOWERING LOCUS T (FT), APETALA1 (AP1) and AINTEGUMENTA-like (AIL) was analyzed at the shoot apex and latent buds of vines during the transition from PD to ED. After shift to SD photoperiod, increased expression of cell cycle genes in the shoot apex suggests a high mitotic activity in this organ which could prevent them from entering into ED. Additionally, the increased expression of VvFT, VvAP1and VvAIL2 in the shoot apex, and the up-regulation of VvFT, VvAP1and cell cycle genes VvCDKA, VvCDKB2, VvCYCA.1, by the dormancy-breaking compound hydrogen cyanamide (H2CN2), strongly suggests that VvFT plays a key role in regulating transcriptionally cell cycle genes, giving thus, more support to the model for photoperiodic control of seasonal growth in trees. Furthermore, downregulation of VvFT by the SD photoperiod detected in leaves and buds of grapevines highlights the importance of VvFT in the induction of growth cessation and in ED development, probably by regulating the expression of cell cycle genes.
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Affiliation(s)
- Ricardo Vergara
- Facultad de Ciencias, Laboratorio de Bioquímica Vegetal, Universidad de Chile, Casilla 653, Santiago, Chile
- Programa Doctorado en Ciencias Silvoagropecuarias y Veterinarias, Universidad de Chile, Santiago, Chile
| | - Ximena Noriega
- Facultad de Ciencias, Laboratorio de Bioquímica Vegetal, Universidad de Chile, Casilla 653, Santiago, Chile
| | - Francisca Parada
- Facultad de Ciencias, Laboratorio de Bioquímica Vegetal, Universidad de Chile, Casilla 653, Santiago, Chile
| | - Débora Dantas
- Centro de Ciencias e Tecnologías Agropecuarias, Universidade Estadual do Norte Fluminense, Avda Alberto Lamego 2000, Campos Dos Goytacazes, RJ, Brazil
| | - Francisco J Pérez
- Facultad de Ciencias, Laboratorio de Bioquímica Vegetal, Universidad de Chile, Casilla 653, Santiago, Chile.
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Porth I, Klápště J, McKown AD, La Mantia J, Guy RD, Ingvarsson PK, Hamelin R, Mansfield SD, Ehlting J, Douglas CJ, El-Kassaby YA. Evolutionary Quantitative Genomics of Populus trichocarpa. PLoS One 2015; 10:e0142864. [PMID: 26599762 PMCID: PMC4658102 DOI: 10.1371/journal.pone.0142864] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Accepted: 10/27/2015] [Indexed: 11/23/2022] Open
Abstract
Forest trees generally show high levels of local adaptation and efforts focusing on understanding adaptation to climate will be crucial for species survival and management. Here, we address fundamental questions regarding the molecular basis of adaptation in undomesticated forest tree populations to past climatic environments by employing an integrative quantitative genetics and landscape genomics approach. Using this comprehensive approach, we studied the molecular basis of climate adaptation in 433 Populus trichocarpa (black cottonwood) genotypes originating across western North America. Variation in 74 field-assessed traits (growth, ecophysiology, phenology, leaf stomata, wood, and disease resistance) was investigated for signatures of selection (comparing QST -FST) using clustering of individuals by climate of origin (temperature and precipitation). 29,354 SNPs were investigated employing three different outlier detection methods and marker-inferred relatedness was estimated to obtain the narrow-sense estimate of population differentiation in wild populations. In addition, we compared our results with previously assessed selection of candidate SNPs using the 25 topographical units (drainages) across the P. trichocarpa sampling range as population groupings. Narrow-sense QST for 53% of distinct field traits was significantly divergent from expectations of neutrality (indicating adaptive trait variation); 2,855 SNPs showed signals of diversifying selection and of these, 118 SNPs (within 81 genes) were associated with adaptive traits (based on significant QST). Many SNPs were putatively pleiotropic for functionally uncorrelated adaptive traits, such as autumn phenology, height, and disease resistance. Evolutionary quantitative genomics in P. trichocarpa provides an enhanced understanding regarding the molecular basis of climate-driven selection in forest trees and we highlight that important loci underlying adaptive trait variation also show relationship to climate of origin. We consider our approach the most comprehensive, as it uncovers the molecular mechanisms of adaptation using multiple methods and tests. We also provide a detailed outline of the required analyses for studying adaptation to the environment in a population genomics context to better understand the species’ potential adaptive capacity to future climatic scenarios.
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Affiliation(s)
- Ilga Porth
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Département des Sciences du Bois et de la Forêt, Faculté de Foresterie, de Géographie et de Géomatique, Université Laval, Québec, QC, G1V 0A6 Canada
| | - Jaroslav Klápště
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Department of Genetics and Physiology of Forest Trees, Czech University of Life Sciences, Prague, 165 21, Czech Republic
| | - Athena D. McKown
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Jonathan La Mantia
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Corn, Soybean and Wheat Quality Research Unit, United States Department of Agriculture, Wooster, Ohio, 44691 United States of America
| | - Robert D. Guy
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Pär K. Ingvarsson
- Department of Ecology and Environmental Science, Umeå University, Umeå, SE-901 87, Sweden
| | - Richard Hamelin
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Shawn D. Mansfield
- Department of Wood Science, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Jürgen Ehlting
- Department of Biology and Centre for Forest Biology, University of Victoria, Victoria, BC V8W 3N5, Canada
| | - Carl J. Douglas
- Department of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
| | - Yousry A. El-Kassaby
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- * E-mail:
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Way DA, Montgomery RA. Photoperiod constraints on tree phenology, performance and migration in a warming world. PLANT, CELL & ENVIRONMENT 2015; 38:1725-36. [PMID: 25142260 DOI: 10.1111/pce.12431] [Citation(s) in RCA: 130] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2014] [Revised: 07/30/2014] [Accepted: 08/07/2014] [Indexed: 05/10/2023]
Abstract
Increasing temperatures should facilitate the poleward movement of species distributions through a variety of processes, including increasing the growing season length. However, in temperate and boreal latitudes, temperature is not the only cue used by trees to determine seasonality, as changes in photoperiod provide a more consistent, reliable annual signal of seasonality than temperature. Here, we discuss how day length may limit the ability of tree species to respond to climate warming in situ, focusing on the implications of photoperiodic sensing for extending the growing season and affecting plant phenology and growth, as well as the potential role of photoperiod in controlling carbon uptake and water fluxes in forests. We also review whether there are patterns across plant functional types (based on successional strategy, xylem anatomy and leaf morphology) in their sensitivity to photoperiod that we can use to predict which species or groups might be more successful in migrating as the climate warms, or may be more successfully used for forestry and agriculture through assisted migration schemes.
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Affiliation(s)
- Danielle A Way
- Department of Biology, Western University, London, Ontario, Canada, N6A 5B7
- Nicholas School of the Environment, Duke University, Durham, NC, 27708, USA
| | - Rebecca A Montgomery
- Department of Forest Resources, University of Minnesota, St. Paul, MN, 55108, USA
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Estiarte M, Peñuelas J. Alteration of the phenology of leaf senescence and fall in winter deciduous species by climate change: effects on nutrient proficiency. GLOBAL CHANGE BIOLOGY 2015; 21:1005-17. [PMID: 25384459 DOI: 10.1111/gcb.12804] [Citation(s) in RCA: 126] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2014] [Accepted: 09/29/2014] [Indexed: 05/07/2023]
Abstract
Leaf senescence in winter deciduous species signals the transition from the active to the dormant stage. The purpose of leaf senescence is the recovery of nutrients before the leaves fall. Photoperiod and temperature are the main cues controlling leaf senescence in winter deciduous species, with water stress imposing an additional influence. Photoperiod exerts a strict control on leaf senescence at latitudes where winters are severe and temperature gains importance in the regulation as winters become less severe. On average, climatic warming will delay and drought will advance leaf senescence, but at varying degrees depending on the species. Warming and drought thus have opposite effects on the phenology of leaf senescence, and the impact of climate change will therefore depend on the relative importance of each factor in specific regions. Warming is not expected to have a strong impact on nutrient proficiency although a slower speed of leaf senescence induced by warming could facilitate a more efficient nutrient resorption. Nutrient resorption is less efficient when the leaves senesce prematurely as a consequence of water stress. The overall effects of climate change on nutrient resorption will depend on the contrasting effects of warming and drought. Changes in nutrient resorption and proficiency will impact production in the following year, at least in early spring, because the construction of new foliage relies almost exclusively on nutrients resorbed from foliage during the preceding leaf fall. Changes in the phenology of leaf senescence will thus impact carbon uptake, but also ecosystem nutrient cycling, especially if the changes are consequence of water stress.
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Affiliation(s)
- Marc Estiarte
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Cerdanyola del Vallès, 08193, Barcelona, Catalonia, Spain; CREAF, Cerdanyola del Vallès, 08193, Barcelona, Catalonia, Spain
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Teotia S, Tang G. To bloom or not to bloom: role of microRNAs in plant flowering. MOLECULAR PLANT 2015; 8:359-77. [PMID: 25737467 DOI: 10.1016/j.molp.2014.12.018] [Citation(s) in RCA: 175] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Revised: 12/01/2014] [Accepted: 12/15/2014] [Indexed: 05/02/2023]
Abstract
During the course of their life cycles, plants undergo various morphological and physiological changes underlying juvenile-to-adult and adult-to-flowering phase transitions. To flower or not to flower is a key step of plasticity of a plant toward the start of its new life cycle. In addition to the previously revealed intrinsic genetic programs, exogenous cues, and endogenous cues, a class of small non-coding RNAs, microRNAs (miRNAs), plays a key role in plants making the decision to flower by integrating into the known flowering pathways. This review highlights the age-dependent flowering pathway with a focus on a number of timing miRNAs in determining such a key process. The contributions of other miRNAs which exist mainly outside the age pathway are also discussed. Approaches to study the flowering-determining miRNAs, their interactions, and applications are presented.
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Affiliation(s)
- Sachin Teotia
- Provincial State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China; School of Biotechnology, Gautam Buddha University, Greater Noida, U.P. 201312, India; Department of Biological Sciences and Biotechnology Research Center (BRC), Michigan Technological University, Houghton, MI 49931, USA
| | - Guiliang Tang
- Provincial State Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450002, China; Department of Biological Sciences and Biotechnology Research Center (BRC), Michigan Technological University, Houghton, MI 49931, USA.
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Dual role of tree florigen activation complex component FD in photoperiodic growth control and adaptive response pathways. Proc Natl Acad Sci U S A 2015; 112:3140-5. [PMID: 25713384 DOI: 10.1073/pnas.1423440112] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A complex consisting of evolutionarily conserved FD, flowering locus T (FT) proteins is a regulator of floral transition. Intriguingly, FT orthologs are also implicated in developmental transitions distinct from flowering, such as photoperiodic control of bulbing in onions, potato tuberization, and growth cessation in trees. However, whether an FT-FD complex participates in these transitions and, if so, its mode of action, are unknown. We identified two closely related FD homologs, FD-like 1 (FDL1) and FD-like 2 (FDL2), in the model tree hybrid aspen. Using gain of function and RNAi-suppressed FDL1 and FDL2 transgenic plants, we show that FDL1 and FDL2 have distinct functions and a complex consisting of FT and FDL1 mediates in photoperiodic control of seasonal growth. The downstream target of the FT-FD complex in photoperiodic control of growth is Like AP1 (LAP1), a tree ortholog of the floral meristem identity gene APETALA1. Intriguingly, FDL1 also participates in the transcriptional control of adaptive response and bud maturation pathways, independent of its interaction with FT, presumably via interaction with abscisic acid insensitive 3 (ABI3) transcription factor, a component of abscisic acid (ABA) signaling. Our data reveal that in contrast to its primary role in flowering, FD has dual roles in the photoperiodic control of seasonal growth and stress tolerance in trees. Thus, the functions of FT and FD have diversified during evolution, and FD homologs have acquired roles that are independent of their interaction with FT.
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Stitt M. Chill out with rockcress: quantitative genetics of frost tolerance in the North American wild perennial Boechera stricta. PLANT, CELL & ENVIRONMENT 2014; 37:2453-2455. [PMID: 24905747 DOI: 10.1111/pce.12379] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Affiliation(s)
- Mark Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, Potsdam-Golm, 14476, Germany
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Avia K, Kärkkäinen K, Lagercrantz U, Savolainen O. Association of FLOWERING LOCUS T/TERMINAL FLOWER 1-like gene FTL2 expression with growth rhythm in Scots pine (Pinus sylvestris). THE NEW PHYTOLOGIST 2014; 204:159-170. [PMID: 24942643 DOI: 10.1111/nph.12901] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Accepted: 05/20/2014] [Indexed: 06/03/2023]
Abstract
Understanding the genetic basis of the timing of bud set, an important trait in conifers, is relevant for adaptation and forestry practice. In common garden experiments, both Scots pine (Pinus sylvestris) and Norway spruce (Picea abies) show a latitudinal cline in the trait. We compared the regulation of their bud set biology by examining the expression of PsFTL2, a Pinus sylvestris homolog to PaFTL2, a FLOWERING LOCUS T/TERMINAL FLOWER 1 (FT/TFL1)-like gene, the expression levels of which have been found previously to be associated with the timing of bud set in Norway spruce. In a common garden study, we analyzed the relationship of bud phenology under natural and artificial photoperiods and the expression of PsFTL2 in a set of Scots pine populations from different latitudes. The expression of PsFTL2 increased in the needles preceding bud set and decreased during bud burst. In the northernmost population, even short night periods were efficient to trigger this expression, which also increased earlier under all photoperiodic regimes compared with the southern populations. Despite the different biology, with few limitations, the two conifers that diverged 140 million yr ago probably share an association of FTL2 with bud set, pointing to a common mechanism for the timing of growth cessation in conifers.
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Affiliation(s)
- Komlan Avia
- Department of Biology, University of Oulu, PO Box 3000, FIN-90014, Oulu, Finland
- Biocenter Oulu, University of Oulu, 90014, Oulu, Finland
| | - Katri Kärkkäinen
- Finnish Forest Research Institute, METLA, University of Oulu, PO Box 413, FIN-90014, Oulu, Finland
| | - Ulf Lagercrantz
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752, 36, Uppsala, Sweden
| | - Outi Savolainen
- Department of Biology, University of Oulu, PO Box 3000, FIN-90014, Oulu, Finland
- Biocenter Oulu, University of Oulu, 90014, Oulu, Finland
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Yordanov YS, Ma C, Strauss SH, Busov VB. EARLY BUD-BREAK 1 (EBB1) is a regulator of release from seasonal dormancy in poplar trees. Proc Natl Acad Sci U S A 2014; 111:10001-6. [PMID: 24951507 PMCID: PMC4103365 DOI: 10.1073/pnas.1405621111] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Trees from temperate latitudes transition between growth and dormancy to survive dehydration and freezing stress during winter months. We used activation tagging to isolate a dominant mutation affecting release from dormancy and identified the corresponding gene EARLY BUD-BREAK 1 (EBB1). We demonstrate through positioning of the tag, expression analysis, and retransformation experiments that EBB1 encodes a putative APETALA2/Ethylene responsive factor transcription factor. Transgenic up-regulation of the gene caused early bud-flush, whereas down-regulation delayed bud-break. Native EBB1 expression was highest in actively growing apices, undetectable during the dormancy period, but rapidly increased before bud-break. The EBB1 transcript was localized in the L1/L2 layers of the shoot meristem and leaf primordia. EBB1-overexpressing transgenic plants displayed enlarged shoot meristems, open and poorly differentiated buds, and a higher rate of cell division in the apex. Transcriptome analyses of the EBB1 transgenics identified 971 differentially expressed genes whose expression correlated with the EBB1 expression changes in the transgenic plants. Promoter analysis among the differentially expressed genes for the presence of a canonical EBB1-binding site identified 65 putative target genes, indicative of a broad regulatory context of EBB1 function. Our results suggest that EBB1 has a major and integrative role in reactivation of meristem activity after winter dormancy.
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Affiliation(s)
- Yordan S Yordanov
- School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931; and
| | - Cathleen Ma
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331-5752
| | - Steven H Strauss
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR 97331-5752
| | - Victor B Busov
- School of Forest Resources and Environmental Science, Michigan Technological University, Houghton, MI 49931; and
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Johansson M, Ibáñez C, Takata N, Eriksson ME. The perennial clock is an essential timer for seasonal growth events and cold hardiness. Methods Mol Biol 2014; 1158:297-311. [PMID: 24792060 DOI: 10.1007/978-1-4939-0700-7_20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Over the last several decades, changes in global temperatures have led to changes in local environments affecting the growth conditions for many species. This is a trend that makes it even more important to understand how plants respond to local variations and seasonal changes in climate. To detect daily and seasonal changes as well as acute stress factors such as cold and drought, plants rely on a circadian clock. This chapter introduces the current knowledge and literature about the setup and function of the circadian clock in various tree and perennial species, with a focus on the Populus genus.
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Affiliation(s)
- Mikael Johansson
- Molecular Cell Physiology, Bielefeld University, 100131, 33615, Bielefeld, Germany,
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Azeez A, Miskolczi P, Tylewicz S, Bhalerao RP. A tree ortholog of APETALA1 mediates photoperiodic control of seasonal growth. Curr Biol 2014; 24:717-24. [PMID: 24656832 DOI: 10.1016/j.cub.2014.02.037] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2013] [Revised: 02/06/2014] [Accepted: 02/13/2014] [Indexed: 11/19/2022]
Abstract
BACKGROUND Photoperiodic control of development plays a key role in adaptation of plants to seasonal changes. A signaling module consisting of CONSTANS (CO) and FLOWERING LOCUS T (FT) mediates in photoperiodic control of a variety of developmental transitions (e.g., flowering, tuberization, and seasonal growth cessation in trees). How this conserved CO/FT module can mediate in the photoperiodic control of diverse unrelated developmental programs is poorly understood. RESULTS We show that Like-AP1 (LAP1), a tree ortholog of Arabidopsis floral meristem identity gene APETALA1 (AP1), mediates in photoperiodic control of seasonal growth cessation downstream of the CO/FT module in hybrid aspen. Using LAP1 overexpressors and RNAi-suppressed transgenic trees, we demonstrate that short day (SD)-mediated downregulation of LAP1 expression is required for growth cessation. In contrast with AP1 targets in flowering, LAP1 acts on AINTEGUMENTA-like 1 transcription factor, which is implicated in SD-mediated growth cessation. Intriguingly, unlike AP1 in Arabidopsis, ectopic expression of LAP1 fails to induce early flowering in hybrid aspen trees. CONCLUSIONS These results indicate that AP1 ortholog in trees has acquired a novel function in photoperiodic regulation of seasonal growth. Thus, photoperiodic signaling pathway may have diverged downstream of AP1/LAP1 rather than the CO/FT module during evolution. Moreover, control of flowering by the CO/FT module can be uncoupled from its role in photoperiodic control of seasonal growth in trees. Thus, our findings can explain mechanistically how a conserved signaling module can mediate in the control of a highly diverse set of developmental transitions by a similar input signal, namely photoperiod.
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Affiliation(s)
- Abdul Azeez
- Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, SLU, 90187 Umeå, Sweden
| | - Pál Miskolczi
- Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, SLU, 90187 Umeå, Sweden
| | - Szymon Tylewicz
- Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, SLU, 90187 Umeå, Sweden
| | - Rishikesh P Bhalerao
- Umeå Plant Science Center, Department of Forest Genetics and Plant Physiology, SLU, 90187 Umeå, Sweden.
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