Dual roles of AQDS as electron shuttles for microbes and dissolved organic matter involved in arsenic and iron mobilization in the arsenic-rich sediment

Colloidal fraction on pomelo peel-derived biochar plays a dual role as electron shuttle and adsorbent in controlling arsenic transformation in anoxic paddy soil

Arsenic release and reduction in anoxic environments can be mitigated or facilitated by biochar amendment. However, the key fractions in biochars and how they control arsenic transformation remain poorly understood. In this study, a biochar produced from pomelo peel was rich in colloids and was used to evaluate the roles of the colloidal and residual fractions of biochar in arsenic transformation in anoxic paddy soil. Bulk biochar showed a markedly higher maximum adsorption capacity for As(III) at 1732 mg/kg than for As(V) at 75.7 mg/kg, mainly because of the colloidal fraction on the surface. When compared with the control and treatments with the colloidal/residual fraction, the addition of bulk biochar facilitated As(V) reduction and release in the soil during days 0-12, but decreased the dissolved As(III) concentration during days 12-20. The colloidal fraction revealed significantly higher electron donating capacity (8.26 μmole-/g) than that of bulk biochar (0.88 μmole-/g) and residual fraction (0.65 μmole-/g), acting as electron shuttle to promote As(V) reduction. Because the colloidal fraction was rich in aliphatic carbon, fulvic acid-like compounds, potassium, and calcium, it favored As(III) adsorption when more As(III) was released, probably via organic-cation-As(III) complexation. These findings provide deeper insight into the role of the colloidal fraction of biochar in controlling anaerobic arsenic transformation, which will be helpful for the practical application of biochar in arsenic-contaminated environments.

Synergistic effects of warming and humic substances on driving arsenic reduction and methanogenesis in flooded paddy soil

Microbially-driven arsenic reduction and methane emissions in anaerobic soils are regulated by widespread humic substances (HS), while how this effect responds to climate change remains unknown. We investigated potential synergistic effects of HS in response to temperature changes in arsenic-contaminated paddy soils treated with humic acid (HA) and fulvic acid (FA) at temperatures ranging from 15 to 45 °C. Our results reveal a significant increase in arsenic reduction (5.6 times) and methane emissions (178 times) driven by HS, which can be exponentially stimulated at 45 °C. Acting as a electron shuttle, HS determines microbial arsenic reduction, further stimulated by warming. The top three sensitive genera are Geobacter, Anaeromyxobacter, and Gaiella which are responsible for enhanced arsenic reduction, as well as for the reduction of iron and HS with their functional genes; arrA and Geobacter spp. The top three sensitive methanogens are Methanosarsina, Methanocella, and Methanoculleus. Our study suggests notable synergistic effects between HS and warming in stimulating arsenic reduction and methanogenesis in paddy soils. Overall, the findings of this work highlight the high sensitivity of HS-mediated microbial arsenic transformation and methanogenesis in response to warming, which add potential value in predicting the biogeochemical cycling of arsenic and methane in soil under the context of climate change.

Transformation of dissolved organic matter during groundwater arsenite removal using air cathode iron electrocoagulation

Dissolve organic matters (DOM) usually showed negative effect on the removal of inorganic arsenic (As) in groundwater by electrochemical approaches, yet which parts of sub-component within DOM played the role was lack of evidence. Herein, we investigated the effects of land-source humic-like acid (HA) on groundwater As(III) removal using air cathode iron electrocoagulation, based on the parallel factor analysis of three-dimensional excitation-emission matrix and statistical methods. Our results showed that the land-source HA contained five kinds of components and all components presented significantly negative correlations with the removal of both As(III) and As(V). However, the high aromatic fulvic-like acid and low aromatic humic-like acid components of land-source HA presented the opposite correlations with the concentration of As(III) during the reaction. The high aromaticity fulvic-like components of land-source HA (Sigma-Aldrich HA, SAHA) produced during the reaction facilitated the oxidation of As(III) due to its high electron transfer capacities and good solubility in wide pH range, but the low aromaticity humic-like ones worked against the oxidation of As(III). Our findings offered the novel insights for the flexible activities of DOM in electron Fenton system.

Simultaneous suppression of As mobilization and N2O emission from NH4+/As-rich paddy soils by combined nitrate and birnessite amendment

The environmental impacts of As mobilization and nitrous oxide (N2O) emission in flooded paddy soils are serious issues for food safety and agricultural greenhouse gas emissions. Several As immobilization strategies utilizing microbially-mediated nitrate reducing-As(III) oxidation (NRAO) and birnessite (δ-MnO2)-induced oxidation/adsorption have proven effective for mitigating As bioavailability in flooded paddy soils. However, several inefficiency and unsustainability issues still exist in these remediation approaches. In this study, the effects of a combined treatment of nitrate and birnessite were assessed for the simultaneous suppression of As(III) mobilization and N2O emission from flooded paddy soils. Microcosm incubations confirmed that the combined treatment achieved an effective suppression of As(III) mobilization and N2O emission, with virtually no As(T) released and at least a 87% decrease in N2O emission compared to nitrate treatment alone after incubating for 8 days. When nitrate and birnessite are co-amended to flooded paddy soils, the activities of denitrifying enzymes within the denitrification electron transport pathway were suppressed by MnO2. As a result, the majority of applied nitrate participated in nitrate-dependent microbial Mn(II) oxidation. The regenerated biogenetic MnO2 was available to facilitate subsequent cycles of As(III) immobilization and concomitant N2O emission suppression, sustainable remediation strategy. Moreover, the combined nitrate-birnessite amendment promoted the enrichment of Pseudomonas, Achromobacter and Cupriavidu, which are known to participate in the oxidation of As(III)/Mn(II). Our findings document strong efficacy for the combined nitrate/birnessite treatment as a remediation strategy to simultaneously mitigate As-pollution and N2O emission, thereby improving food safety and reducing greenhouse gas emissions from flooded paddy soils enriched with NH4+ and As.

Illuminated fulvic acid stimulates denitrification and As(III) immobilization in flooded paddy soils via an enhanced biophotoelectrochemical pathway

Fulvic acid (FA) is a representative photosensitive dissolved organic matter (DOM) compound that occurs naturally in paddy soils. In this study, the effect of a FA + nitrate treatment (0, 4 and 8 mg/L FA + 20 mmol/L nitrate) on denitrification and As(III) immobilization in flooded paddy soils was assessed under dark and intermittently illuminated conditions (12 h light+12 h dark). The FA input stimulated denitrification in illuminated soils (~100 % of nitrate removal within 6 days) compared to dark conditions (~92 % nitrate removal after 6 days). Meanwhile, As(III) (initial concentration of 0.1 mmol/L) was nearly completely immobilized (~100 %) under illuminated conditions after 4 days for the FA + nitrate treatment compared to 90- 93 % retention in the dark. Denitrification and As immobilization were positively related to the FA dosage in the illuminated assays. The stronger denitrification in illuminated soils was ascribed to denitrifiers harvesting photoelectrons from photosensitive substrates/semiconducting minerals. FA addition also increased the activities of denitrifying enzymes (e.g., NAR, NIR and NOR) and the denitrification electron transport system by nearly 0.6-0.7 and 1.5-1.8 times that of the nitrate-alone treatment under illuminated and dark conditions, thereby fostering stronger denitrification. Upon irradiation, As(III) immobilization was not only stimulated by the interactions with the denitrification pathway whereby As(III) acts as an electron donor for denitrifiers, but was also modulated by Fe(III)/oxidative reactive species-derived photooxidation of As(III). Moreover, the FA + nitrate treatment promoted the enrichment of metal-oxidizing bacteria (e.g., Stenotrophomonas and Acidovorax) that are responsible for nitrate-dependent As(III)/Fe(II) oxidation. The results of this study enhance our understanding of interactions among the biogeochemical cycles of As, Fe, N and C, which are intricately linked by a biophotoelectrochemical pathway in flooded paddy soils.

Soil Humic Acid Stimulates Potentially Active Dissimilatory Arsenate-Reducing Bacteria in Flooded Paddy Soil as Revealed by Metagenomic Stable Isotope Probing

Dissimilatory arsenate reduction contributes a large proportion of arsenic flux from flooded paddy soil, which is closely linked to soil organic carbon input and efflux. Humic acid (HA) represents a natural ingredient in soil and is shown to enhance microbial arsenate respiration to promote arsenic mobility. However, the community and function profiles of metabolically active arsenate-respiring bacteria and their interactions with HA in paddy soil remain unclear. To probe this linkage, we performed a genome-centric comparison of potentially active arsenate-respiring bacteria in anaerobic microcosms amended with 13C-lactate and HA by combining stable-isotope probing with genome-resolved metagenomics. Indeed, HA greatly accelerated the microbial reduction of arsenate to arsenite. Enrichment of bacteria that harbor arsenate-respiring reductase genes (arrA) in HA-enriched 13C-DNA was confirmed by metagenomic binning, which are affiliated with Firmicutes (mainly Desulfitobacterium, Bacillus, Brevibacillus, and Clostridia) and Acidobacteria. Characterization of reference extracellular electron transfer (EET)-related genes in these arrA-harboring bacteria supports the presence of EET-like genes, with partial electron-transport chain genes identified. This suggests that Gram-positive Firmicutes- and Acidobacteria-related members may harbor unspecified EET-associated genes involved in metal reduction. Our findings highlight the link between soil HA and potentially active arsenate-respiring bacteria, which can be considered when using HA for arsenic removal.

The use of urea hydrogen peroxide as an alternative N-fertilizer to reduce accumulation of arsenic in rice grains

A greenhouse experiment was conducted to examine the effects of urea hydrogen peroxide (UHP) on reducing the accumulation of As in rice grains. The results show that UHP effectively triggered Fenton-like reaction by reacting with Fe2+ in the paddy soils. This significantly inhibited the activities of As(V)-reducing microbes, causing impediment of As(V)-As(III) conversion following inundation of dryland crop soils for paddy rice cultivation. As-methylating microbes were also inhibited, adversely affecting As methylation in the soils. These processes led to the reduction in phyto-availability of As in the soil solutions for uptake by rice plant roots, and consequently reduced the accumulation of As in the rice grains. In this study, an UHP application rate of 0.0625% on three occasions (tillering, heading and filling) during the rice growth period was sufficient to lower the rice grain-borne As concentration to below 0.2 mg/kg, meeting the quality standard set by the Chinese government. No additive effect on reducing grain-borne As was observed for the joint application of UHP and biochar or biochar composite. The use of UHP for soil fertilization had no adverse impact on rice yield in comparison with the application of urea at an equal amount of nitrogen.

Co-occurrence of arsenic and iodine in the middle-deep groundwater of the Datong Basin: From the perspective of optical properties and isotopic characteristics

Redox processes can induce arsenic (As) and iodine (I) transformation and thus change As and I co-occurrence, yet there is no evidence that Fe-C-S coupled redox processes have such an impact on the co-occurrence of As and I. To fill this gap, middle-deep groundwater from the Datong Basin were samples for the purpose of exploring how dissolved organic matter (DOM) reactivity affects As and I enrichment and how iron reduction and sulfate reduction processes influence As and I co-occurrence. We identified three DOM components: reduced and oxidized quinone compounds (C1 and C3) and a labile DOM from terrestrial inputs (C2). Two pathways of DOM processing take place in the aquifer, including the degradation of labile DOM to HCO₃^- and the transformation of oxidized quinone compounds to reduced quinone compounds. Electrons transfer drives the reduction of the terminal electron acceptors. The supply of electrons promotes the reduction of iron and sulfate by microbes, enhancing As and I co-enrichment in groundwater. Thus, the reduction processes of iron and sulfate triggered by the dual roles of DOM affect dissolved As and I co-enrichment. As and I biogeochemical cycling interacts with C, Fe, and S cycling. These results provide isotopic and fluorescence evidence that explains the co-occurrence of arsenic and iodine in middle-deep aquifers.

Organic matter degradation and arsenic enrichment in different floodplain aquifer systems along the middle reaches of Yangtze River: A thermodynamic analysis

Geogenic arsenic (As) contaminated groundwater has been widely accepted associating with dissolved organic matter (DOM) in aquifers, but the underlying enrichment mechanism at molecular-level from a thermodynamic perspective is poorly evidenced. To fill this gap, we contrasted the optical properties and molecular compositions of DOM coupled with hydrochemical and isotopic data in two floodplain aquifer systems with significant As variations along the middle reaches of Yangtze River. Optical properties of DOM indicate that groundwater As concentration is mainly associated with terrestrial humic-like components rather than protein-like components. Molecular signatures show that high As groundwater has lower H/C ratios, but greater DBE, AI_mod, and NOSC values. With the increase of groundwater As concentration, the relative abundance of CHON3 formulas gradually decreased while that of CHON2 and CHON1 increased, indicating the importance of N-containing organics in As mobility, which is also evidenced by nitrogen isotope and groundwater chemistry. Thermodynamic calculation demonstrated that organic matter with higher NOSC values preferentially favored the reductive dissolution of As-bearing Fe(III) (hydro)oxides minerals and thus promoted As mobility. These findings could provide new insights to decipher organic matter bioavailability in As mobilization from a thermodynamical perspective and are applicable to similar geogenic As-affected floodplain aquifer systems.

Lysogenic bacteriophages encoding arsenic resistance determinants promote bacterial community adaptation to arsenic toxicity

Emerging evidence from genomics gives us a glimpse into the potential contribution of lysogenic bacteriophages (phages) to the environmental adaptability of their hosts. However, it is challenging to quantify this kind of contribution due to the lack of appropriate genetic markers and the associated controllable environmental factors. Here, based on the unique transformable nature of arsenic (the controllable environmental factor), a series of flooding microcosms was established to investigate the contribution of arsM-bearing lysogenic phages to their hosts' adaptation to trivalent arsenic [As(III)] toxicity, where arsM is the marker gene associated with microbial As(III) detoxification. In the 15-day flooding period, the concentration of As(III) was significantly increased, and this elevated As(III) toxicity visibly inhibited the bacterial population, but the latter quickly adapted to As(III) toxicity. During the flooding period, some lysogenic phages re-infected new hosts after an early burst, while others persistently followed the productive cycle (i.e., lytic cycle). The unique phage-host interplay contributed to the rapid spread of arsM among soil microbiota, enabling the quick recovery of the bacterial community. Moreover, the higher abundance of arsM imparted a greater arsenic methylation capability to soil microbiota. Collectively, this study provides experimental evidence for lysogenic phages assisting their hosts in adapting to an extreme environment, which highlights the ecological perspectives on lysogenic phage-host mutualism.

Linking DOM characteristics to microbial community: The potential role of DOM mineralization for arsenic release in shallow groundwater

Dissolved organic matter (DOM) play critical roles in arsenic (As) biotransformation in groundwater, but its compositional characteristics and interactions with indigenous microbial communities remain unclear. In this study, DOM signatures coupled with taxonomy and functions of microbial community were characterized in As-enriched groundwater by excitation-emission matrix, Fourier transform ion cyclotron resonance mass spectrometry and metagenomic sequencing. Results showed that As concentrations were significantly positively correlated with DOM humification (r = 0.707, p < 0.01) and the most dominant humic acid-like DOM components (r = 0.789, p < 0.01). Molecular characterization further demonstrated high DOM oxidation degree, with the prevalence of unsaturated oxygen-low aromatics, nitrogen (N₁/N₂)-containing compounds and unique CHO molecules in high As groundwater. These DOM properties were consistent with microbial composition and functional potentials. Both taxonomy and binning analyses demonstrated the dominance of Pseudomonas stutzeri, Microbacterium and Sphingobium xenophagum in As-enriched groundwater which possessed abundant As-reducing gene, with organic carbon degrading genes capable of labile to recalcitrant compounds degradation and high potentials of organic nitrogen mineralization to generate ammonium. Besides, most assembled bins in high As groundwater presented strong fermentation potentials which could facilitate carbon utilization by heterotrophic microbes. This study provides better insight into the potential role of DOM mineralization for As release in groundwater system.

Variable effects of soil organic matter on arsenic behavior in the vadose zone under different bulk densities

The nonstationary nature of water and oxygen content in the vadose zone determines various biogeochemical reactions regarding arsenic (As) therein, which affects the groundwater vulnerability to As contamination at a site. In the present study, we evaluated the effect of soil organic matter (OM) on the behavior of As using specifically designed soil columns that simulated the vadose zone. Three wet-dry cycles were applied to each of the four columns with different OM contents and bulk densities. OM was found to exhibit variable effects, either inhibiting or accelerating the mobilization of As, depending on bulk density. At a moderate bulk density (< 1.27 g/cm³), OM slightly lowered the pH of pore water, which enhanced the sorption of As onto the iron (Fe) oxides, promoting the retention of As in soil. In the soil column with a relatively higher bulk density (1.36 g/cm³), however, the dissimilatory reduction of iron oxides was triggered by rich OM under oxygen-limited conditions. X-ray absorption spectroscopy analysis revealed that alternate wetting and drying transformed the Fe oxides in the soil by reductive dissolution and subsequent re-precipitation. Consequently, As was not stably retained in the soil, and its mobilization downwards was further accelerated.

Arsenic release from microbial reduction of scorodite in the presence of electron shuttle in flooded soil

Scorodite (FeAsO₄·H₂O) is a common arsenic-bearing (As-bearing) iron mineral in near-surface environments that could immobilize or store As in a bound state. In flooded soils, microbe induced Fe(III) or As(V) reduction can increase the mobility and bioavailability of As. Additionally, humic substances can act as electron shuttles to promote this process. The dynamics of As release and diversity of putative As(V)-reducing bacteria during scorodite reduction have yet to be investigated in detail in flooded soils. Here, the microbial reductive dissolution of scorodite was conducted in an flooded soil in the presence of anthraquinone-2,6-disulfonate (AQDS). Anaeromyxobacter, Dechloromonas, Geothrix, Geobacter, Ideonella, and Zoogloea were found to be the dominant indigenous bacteria during Fe(III) and As(V) reduction. AQDS increased the relative abundance of dominant species, but did not change the diversity and microbial community of the systems with scorodite. Among these bacteria, Geobacter exhibited the greatest increase and was the dominant Fe(III)- and As(V)-reducing bacteria during the incubation with AQDS and scorodite. AQDS promoted both Fe(III) and As(V) reduction, and over 80% of released As(V) was microbially transformed to As(III). The increases in the abundance of arrA gene and putative arrA sequences of Geobacter were higher with AQDS than without AQDS. As a result, the addition of AQDS promoted microbial Fe(III) and As(V) release and reduction from As-bearing iron minerals into the environment. These results contribute to exploration of the transformation of As from As-bearing iron minerals under anaerobic conditions, thus providing insights into the bioremediation of As-contaminated soil.

Humic acid and fulvic acid facilitate the formation of vivianite and the transformation of cadmium via microbially-mediated iron reduction

The effects of humic acids (HA) and fulvic acids (FA) on the fate of Cd in anaerobic environment upon microbial reduction of Cd-bearing ferrihydrite (Fh) with Geobacter metallireducens were investigated. The results showed that HA and FA could promote the reductive dissolution of Fh and the formation of vivianite. After incubation of 38 d, vivianite accounted for 47.19%, 59.22%, and 48.53% of total Fe in biological control batch (BCK), HA and FA batches (C/Fe molar ratio of 1.0), respectively, by Mössbauer spectroscopy analysis. In terms of Cd, HA and FA could promote the release of adsorbed Cd during the initial bioreduction process, but reassuringly, after 38 d the dissolved Cd with HA and FA addition batches were 0.58-0.91 and 0.99-1.08 times of the BCK, respectively. The proportions of residual Cd in HA batches were higher than FA and BCK batches, indicating that HA was better than FA in immobilizing Cd. This might be because the quinone groups in HA could act as electron shuttle. This study showed that HA facilitated the transformation of vivianite better than FA, and Cd can be stabilized by resorption or co-precipitation with vivianite, providing a theoretical support for the translocation of Cd in sediment-water interface.

Synchronous response of arsenic methylation and methanogenesis in paddy soils with rice straw amendment

Rice straw (RS) amendment promotes arsenic (As) methylation and methane (CH₄) emissions from paddy soils, which can cause straighthead disease and climate warming. Although methanogens have been identified as critical regulators of methylated As concentrations in flooded soils, the mechanism of these microbial groups on As methylation in paddy soils with RS amendment remains unknown. In this study, paddy soil was incubated to test the response in As methylation and methanogenesis in flooded soil with RS amendment. Our results showed that RS amendment increased the accumulation of monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA) whether methanogenesis was inhibited or not. The methanogens in the genera of Methanocella probably played critical role in promoting As methylation in flooded soil with RS amendment. With the RS amendment, inhibition of methanogenesis led to the accumulation MMA and DMA by suppressing DMA demethylation. The demethylation of DMA was driven by methanogens possibly belonging to the genera of Methanobacterium. This study revealed a wealth of methanogens that dominate As methylation with RS amendment. It will provide guidance to RS amendment in As contaminated paddy soil and has important implications for rice quality and global climate change.

Study on the effect of Cr(VI) removal by stimulating indigenous microorganisms using molasses

Molasses have a prominent effect on the bioremediation of Cr(VI) contaminated groundwater. However, its reaction mechanism is not detailed. In this paper, the removal of Cr(VI) with different carbon sources was compared to explore the effect and mechanism of the molasses. The addition of molasses can completely remove 25 mg/L Cr(VI), while the removal efficiency by glucose or emulsified vegetable oil was only 20%. Molasses could rapidly stimulate the reduction of Cr(VI) by indigenous microorganisms and weakened the toxicity on bacteria. The average removal rate of Cr(VI) was 0.42 mg/L·h, 10 times that of glucose system. Compared with glucose, molasses can remediate Cr(VI) at a higher concentration (50 mg/L), and the carbohydrate acted as microbial nutrients. Direct and indirect reduction acted together, the Fe(II) content in the aquifer medium increased from 1.7% to 4.7%. The addition of molasses extract into glucose system could increased the removal rate of Cr(VI) by 2-3 times, and the ions of molasses had no significant effect on the reduction. Excitation emission matrix fluorescence spectra and electrochemical analysis proved that the molasses contained humic acid-like substances, which had the ability of electron shuttle and improved the reduction rate of Cr(VI). In the process of bioreduction, the composition of molasses changed and the electron transport capacity increased from 104.2 to 446.5 μmol/(g C), but these substances could not be used as electron transport media to continuously enhance the reduction effect. This study is of great significance to fully understand the role and application of molasses.

Effect of humic acid on bioreduction of facet-dependent hematite by Shewanella putrefaciens CN-32

Interfacial reactions between iron (Fe) (hydr)oxide surfaces and the activity of bacteria during dissimilatory Fe reduction affect extracellular electron transfer. The presence of organic matter (OM) and exposed facets of Fe (hydr)oxides influence this process. However, the underlying interfacial mechanism of facet-dependent hematite and its toxicity toward microbes during bioreduction in the presence of OM remains unknown. Herein, humic acid (HA), as typical OM, was selected to investigate its effect on the bioreduction of hematite {100} and {001}. When HA concentration was increased from 0 to 500 mg L^-1, the bioreduction rates increased from 0.02 h^-1 to 0.04 h^-1 for hematite {100} and from 0.026 h^-1 to 0.05 h^-1 for hematite {001}. Since hematite {001} owned lower resistance than hematite {100} irrespective of the HA concentration, and hematite {100} was less favorable for reduction. Microscopy-based analysis showed that more hematite {001} nanoparticles adhered to the cell surface and were bound more closely to the bacteria. Moreover, less cell damage was observed in the HA-hematite {001} treatments. As the reaction progressed, some bacterial cells died or were inactivated; confocal laser scanning microscopy showed that bacterial survival was higher in the HA-hematite {001} treatments than in the HA-hematite {100} treatments after bioreduction. Spectroscopic analysis revealed that facet-dependent binding was primarily realized by surface complexation of carboxyl functional groups with structural Fe atoms, and that the binding order of HA functional groups and hematite was affected by the exposed facets. The exposed facets of hematite could influence the electrochemical properties and activity of bacteria, as well as the binding of bacteria and Fe oxides in the presence of OM, thereby governing the extracellular electron transfer and concomitant bioreduction of Fe (hydr)oxides. These results provide new insights into the interfacial reactions between OM and facet-dependent Fe oxides in anoxic, OM-rich soil and sediment environments.

Efficient bioelectricity generation and carbazole biodegradation using an electrochemically active bacterium Sphingobium yanoikuyae XLDN2-5

Carbazole and its derivatives are polycyclic aromatic heterocycles with unusual toxicity and mutagenicity. However, disposal of these polycyclic aromatic heterocycles remains a significant challenge. This study focused on efficient resource recovery from carbazole using an obligate aerobe, Sphingobium yanoikuyae XLDN2-5, in microbial fuel cells (MFCs). S. yanoikuyae XLDN2-5 successfully achieved carbazole degradation and simultaneously electricity generation in MFCs with a maximum power density of 496.8 mW m^-2 and carbazole degradation rate of 100%. It is the first time that S. yanoikuyae XLDN2-5 was discovered as an electrochemically active bacterium with high extracellular electron transfer (EET) capability. Redox mediator analysis indicated that no self-produced redox mediators were found for S. yanoikuyae XLDN2-5 under analysis conditions, and the exogenous redox mediators used in this study did not promote its EET. The nanowires produced by S. yanoikuyae XLDN2-5 cells were found in the biofilm by morphology characterization and the growth process of the nanowires was consistent with the discharge process of the MFC. Conductivity determination further verified that the nanowires produced by S. yanoikuyae XLDN2-5 cells were electrically conductive. Based on these results, it is speculated that S. yanoikuyae XLDN2-5 may mainly utilize conductive nanowires produced by itself rather than redox mediators to meet the requirements of normal energy metabolism when it grows in the low dissolved oxygen zone of the anodic biofilm. These novel findings on the EET mechanism of S. yanoikuyae XLDN2-5 lay a foundation for further exploration of polycyclic aromatic heterocyclic pollutants treatment in electrochemical devices, which may create new biotechnology processes for these pollutants control.

Humin and biochar accelerated microbial reductive dechlorination of 2,4,6-trichlorophenol under weak electrical stimulation

The extracellular electron transfer (EET) is regarded as one of the crucial factors that limit the application of the bioelectrochemical system (BES). In this study, two different solid-phase redox mediators (RMs), biochar (1.2 g/L, T-B) and humin (1.2 g/L, T-H) were used for boosting the microorganisms accessing the electrons required for 2,4,6-TCP dechlorination under weak electrical stimulation (-0.278 V vs. Standard hydrogen electrode). BES with dissolved RM anthraquinone-2,6-disulfonate (AQDS 0.5 mmol/L, T-A) was used as a comparison. The results showed that dechlorination of 2,4,6-TCP could be greatly accelerated by biochar (1.78 d^-1) and humin (1.50 d^-1) than AQDS (0.24 d^-1) and no RM control (T-M, 0.27 d^-1). Moreover, phenol became the predominant dechlorination product in T-H (78.5 %) and T-B (63.0 %) instead of 4-CP in T-M (67.1 %) and T-A (89.8 %). Pseudomonas, Sulfurospirillum, Desulfuromonas, Dehalobacter, Anaeromyxobacter, and Dechloromonas belonging to Proteobacteria or Firmicutes rather than Chloroflexi might be responsible for the dechlorination activity. Notably, different RMs tended to stimulate distinct electroactive bacteria. Pseudomonas was the most abundant microorganism in T-M (41.92 %) and T-A (17.24 %), while Rhodobacter was most prevalent in T-H (20.04 %) and Azonexus was predominant in T-B (48.48 %). This study is essential in advancing the understanding of EET in BES for microbial degradation of organohalide contaminants under weak electrical stimulation.

Control the greenhouse gas emission via mediating the dissimilatory iron reduction: Fulvic acid inhibit secondary mineralization of ferrihydrite

Reducing methane emission is of great importance to control the global greenhouse effect. Dissimilatory iron reduction (DIR) coupling of organic matter decomposition may suppress methane production via reducing primary electron donors available for methanogenesis. However, during DIR, the amorphous iron oxides (e.g., ferrihydrite) are easy to transform into more stable crystalline iron minerals, which slowdowns the rate of DIR. Humic substance (HS) with redox activity has been extensively reported to facilitate DIR via "electron shuttles" mechanism, yet little known about the effect of HS on mediating the mineralization of iron oxides and the subsequent influences on DIR and methanogenesis. To clarify this, ferrihydrite and fulvic acid (FA) (as the model substance of HS) were supplied to anaerobic methanogenesis systems. Results showed that FA could significantly decrease the formation of crystalline iron oxides, enhance DIR rate by 13.72% and suppress methanogenesis by 25.13% compared to ferrihydrite supplemented only. By X-ray absorption spectra analysis, it was found that FA could complex with ferrihydrite via forming a Fe-C/O structure on the second shell of Fe atom. Quantum chemical calculation further confirmed that FA reduced the adsorption energy between Fe(II) and ferrihydrite. Our study suggested that rational use of HS to mediate mineralization pathway of iron oxides could efficiently improve the availability of iron oxides to drive DIR and control the conversion of organics into CH₄ in natural or engineered systems.

Diversity and biogenesis contribution of sulfate-reducing bacteria in arsenic-contaminated soils from realgar deposits

Microbial sulfate reduction, a vital mechanism for microorganisms living in anaerobic, sulfate-rich environments, is an essential aspect of the sulfur biogeochemical cycle. However, there has been no detailed investigation of the diversity and biogenesis contribution of sulfate-reducing bacteria in arsenic-contaminated soils from realgar deposits. To elucidate this issue, soil samples from representative abandoned realgar deposits were collected. Microcosm assays illustrated that all three samples (2-1, 2-2, and 2-3) displayed efficient sulfate and As(V)-respiring activities. Furthermore, a total of 28 novel sequence variants of dissimilatory sulfite reductase genes and 2 new families of dsrAB genes were successfully identified. A novel dissimilatory sulfate-reducing bacterium, Desulfotomaculum sp. JL1, was also isolated from soils, and can efficiently respiratory reduce As(V) and sulfate in 4 and 5 days, respectively. JL1 can promote the generation of yellow precipitates in the presence of multiple electron acceptors (both contain sulfate and As(V) in the cultures), which indicated the biogenesis contribution of sulfate-reducing bacteria to the realgar mine. Moreover, this area had unique microbial communities; the most abundant populations belonged to the phyla Proteobacteria, Chloroflexi, and Acidobacteriota, which were attributed to the unique geochemistry characteristics, such as total organic carbon, total As, NO₃^-, and SO₄^2-. The results of this study provide new insight into the diversity and biogenesis contributions of sulfate-reducing bacteria in arsenic-contaminated soils from realgar deposits.

The Effect of Manure Application on Arsenic Mobilization and Methylation in Different Paddy Soils

Organic matter plays an important role in controlling arsenic(As) release and transformation in soil, however, little is known about the effect of manure application on As behavior in soils with different As contents. In this study, waterlogged incubations using various As-contaminated paddy soils with manure amendment were conducted to investigate how manure application influence As mobilization and methylation in different paddy soils. The results indicated that manure application increased As release in paddy soils with high As (> 30 mg kg^-1) contents. Moreover, our findings also showed that manure application increased the relative abundance of arsM-harboring Euryacheota and Planctomycetes at the phylum level and arsM-harbouring Methanocellaceae, Anaerolinea and Bellinea at genus level, thereby promoting As methylation. These results provide important insights for the significant variation in As mobilization and methylation in paddy soils amended with manure. Moreover, our results suggest that serious consideration should be given to the manure application in As-contaminated paddy soil.

A Hyperthermoactive-Cas9 Editing Tool Reveals the Role of a Unique Arsenite Methyltransferase in the Arsenic Resistance System of Thermus thermophilus HB27

Arsenic detoxification systems can be found in a wide range of organisms, from bacteria to humans. In a previous study, we discovered an arsenic-responsive transcriptional regulator in the thermophilic bacterium Thermus thermophilus HB27 (TtSmtB). Here, we characterize the arsenic resistance system of T. thermophilus in more detail. We employed TtSmtB-based pulldown assays with protein extracts from cultures treated with arsenate and arsenite to obtain an S-adenosyl-l-methionine (SAM)-dependent arsenite methyltransferase (TtArsM). In vivo and in vitro analyses were performed to shed light on this new component of the arsenic resistance network and its peculiar catalytic mechanism. Heterologous expression of TtarsM in Escherichia coli resulted in arsenite detoxification at mesophilic temperatures. Although TtArsM does not contain a canonical arsenite binding site, the purified protein does catalyze SAM-dependent arsenite methylation with formation of monomethylarsenites (MMAs) and dimethylarsenites (DMAs). In addition, in vitro analyses confirmed the unique interaction between TtArsM and TtSmtB. Next, a highly efficient ThermoCas9-based genome-editing tool was developed to delete the TtArsM-encoding gene on the T. thermophilus genome and to confirm its involvement in the arsenite detoxification system. Finally, the TtarsX efflux pump gene in the T. thermophilus ΔTtarsM genome was substituted by a gene encoding a stabilized yellow fluorescent protein (sYFP) to create a sensitive genome-based bioreporter system for the detection of arsenic ions.

Effects of Magnetic Minerals Exposure and Microbial Responses in Surface Sediment across the Bohai Sea

Extensive production and application of magnetic minerals introduces significant amounts of magnetic wastes into the environment. Exposure to magnetic minerals could affect microbial community composition and geographic distribution. Here, we report that magnetic susceptibility is involved in determining bacterial α-diversity and community composition in surface sediment across the Bohai Sea by high-throughput sequencing analysis of the 16S rRNA gene. The results showed that environmental factors (explained 9.80%) played a larger role than spatial variables (explained 6.72%) in conditioning the bacterial community composition. Exposure to a magnetite center may shape the geographical distribution of five dissimilatory iron reducing bacteria. The microbial iron reduction ability and electroactive activity in sediment close to a magnetite center are stronger than those far away. Our study provides a novel understanding for the response of DIRB and electroactive bacteria to magnetic minerals exposure.

Insight into heavy metals (Cr and Pb) complexation by dissolved organic matters from biochar: Impact of zero-valent iron

In this study, batch experiments were conducted to investigate the immobilization of HMs (Cr and Pb) by DOM derived from biochar in the presence and absence of zero-valent iron (Fe) in nitrate and HMs co-contaminated groundwater. Both Cr and Pb were removed effectively in biochar-Fe aqueous systems, while only Pb could be mitigated in biochar systems. Excitation-emission spectrophotometry combined with parallel factor analysis (EEM-PARAFAC) revealed that DOM released from biochar mainly contained human-like and tryptophan-like substances. Moreover, the fluorescence of hemic-like components could be quenched differently by the complexation of HMs, which proved the different removal efficiencies of Cr and Pb in biochar aqueous phase. In biochar-Fe aqueous systems, Fe-C micro-electrolysis was formed in prior to the complexation of DOM-Fe hydroxides. Thus, the chemical reduction was the primary way to removal HMs in batch-Fe systems, which was corresponding with the less variation of DOM components when adding Cr and Pb into aqueous systems. Besides, the observed DOM components with higher aromaticity and humification after adding Cr and Pb, further indicated the complexation of DOM-HMs through the analysis of adsorption and fluorescence indices. These results will provide new insights into the HMs retention on biochar, particularly for the role of Fe on the complexation process.

Synergy between indigenous bacteria and extracellular electron shuttles enhances transformation and mobilization of Fe(III)/As(V)

The reduction of Fe(III) by metal-reducing bacteria through extracellular electron transfer (EET) is a critical link in the biogeochemical cycle of As/Fe, and humic substances are believed to play a role in this process. In this study, the indigenous As-resistant bacterium Bacillus D2201 isolated from the Datong Basin was responsible for the valence transition of Fe and As in the groundwater environment. The bacterium has both the arsC gene for intracellular arsenate reduction and an EET pathway for transferring electrons to an electrode or Fe(III). Chronoamperometry showed that 3.0- and 10.2-fold increases in the output current density were achieved by injecting 0.05 and 0.5 mM AQDS with an inoculation of Bacillus D2201. Interestingly, Fe(III) bio-reduction is not only regulated by AQDS, but also by As(V) stimulation. The increase in pyruvate consumption and levels of intracellular glutathione (GSH) suggest that As pressure promotes cell metabolism and the consumption of electron donors for Fe(III) reduction with strain D2201. The reduction and dissolution of Fe(III) mineral regulated by AQDS dominated the release and mobilization of As. Compared with the AQDS-free treatment, 5.5-, 6.6-, and 7.2-fold increases in the amounts of Fe(II) were released with the addition of 0.1, 0.5, and 1 mM AQDS, respectively, and approximately 2.6-, 2.8-, and 3.2-fold increases in the As(V) levels were observed under the same conditions. These insights have profound environmental implications with respect to the effect of AQDS and As stress on EET and Fe(III) reduction in arsenic-resistant bacteria.

Identification of processes mobilizing organic molecules and arsenic in geothermal confined groundwater from Pliocene aquifers

Organic matter (OM) has been accepted as an important trigger fueling Fe(III) oxide reduction and arsenic release in the late Pleistocene-Holocene anoxic aquifers, whereas its fates and roles on arsenic mobility in the Pliocene aquifer are unclear. To fill this gap, groundwaters from a confined Pliocene aquifer (CG) and an unconfined Holocene aquifer (UG) were sampled in the Guide Basin, China, to monitor evolutions of groundwater geochemistry and OM molecular signatures along the groundwater flow path. The outcomes showed that groundwater pH, temperature, and arsenic concentrations in the CG samples generally increased along the groundwater flow path, which were much higher than those in the UG samples. The numbers and intensities of recalcitrant molecules (polycyclic aromatics and polyphenols) in the CG samples remarkably increased along the path, but relatively labile molecules (highly unsaturated and phenolic compounds and aliphatic compounds) showed the opposite trends. The arsenic-poor (<10 μg/L) UG samples contained more labile molecules than the arsenic-rich CG samples. High groundwater pH, temperature, and sediment age in the confined aquifers may be responsible for the selective mobilization of the unique polycyclic aromatics and polyphenols. The mobilized recalcitrant organic molecules may enhance arsenic release via electron shuttling, complexation, and competition. Furthermore, high temperature and pH may also facilitate arsenic desorption. The study provides molecular-scale evidences that the mobilization of recalcitrant organic molecules and arsenic were concurrent in the geothermal confined groundwater.

Unraveling roles of dissolved organic matter in high arsenic groundwater based on molecular and optical signatures

Dissolved organic matter (DOM) is a crucial controlling factor in mobilizing arsenic. However, direct delineations of DOM regarding both optical properties and molecular signatures were rarely conducted in high-arsenic groundwater. Here, both groundwater and surface water were taken from the Hetao Basin, China, to decipher DOM properties with both optical spectrophotometer and Fourier transform ion cyclotron resonance mass spectrometry. The tryptophan-like component (C4) was averagely less than 30% in groundwater DOM, being positively associated with high H/C-ratio molecules (H/C > 1.2) and mainly grouped as highly unsaturated and phenolic compounds and aliphatic compounds. Other three humic-like components (C1, C2, C3) had positive associations with low H/C-ratio molecules (H/C < 1.2), which mainly consisted of highly unsaturated and phenolic compounds, polyphenols, and polycyclic aromatics. Groundwater arsenic concentrations were positively correlated with humic-like, low H/C-ratio, and recalcitrant organic compounds, which may be the consequence of labile organic matter degradation. The degradation caused Fe(III) oxide reduction and mobilized the solid arsenic. In addition, high abundances of these recalcitrant organic compounds in high-arsenic groundwater may contribute to arsenic enrichment via electron shuttling, competition for surface sites, and complexation process. It suggested that groundwater proxies would be either the result or the cause of biogeochemical processes in aquifers.

Impact of Organic Matter on Microbially-Mediated Reduction and Mobilization of Arsenic and Iron in Arsenic(V)-Bearing Ferrihydrite

Under anoxic conditions, the interactions between As-bearing ferrihydrite (Fh) and As(V)-reducing bacteria are known to cause Fh transformations and As mobilization. However, the impact of different types of organic matter (OM) on microbial As/Fe transformation in As-bearing Fh-organic associations remains unclear. In our study, we therefore exposed arsenate-adsorbed ferrihydrite, ferrihydrite-PGA (polygalacturonic acid), and ferrihydrite-HA (humic acid) complexes to two typical Fe(III)- and As(V)-reducing bacteria, and followed the fate of Fe and As in the solid and aqueous phases. Results show that PGA and HA promoted the reductive dissolution of Fh, resulting in 0.7-1.6 and 0.8-1.9 times more As release than in the OM-free Fh, respectively. This was achieved by higher cell numbers in the presence of PGA, and through Fe-reduction via electron-shuttling facilitated by HA. Arsenic-XAS results showed that the solid-phase arsenite fraction in Fh-PGA and Fh-HA was 15-19% and 27-28% higher than in pure Fh, respectively. The solid-associated arsenite fraction likely increased because PGA promoted cell growth and As(V) reduction, while HA provided electron shuttling compounds for direct microbial As(V)-reduction. Collectively, our findings demonstrate that As speciation and partitioning during microbial reduction of Fh-organic associations are strongly influenced by PGA and HA, as well as the strains' abilities to utilize electron-shuttling compounds.

Role of MnO2 in controlling iron and arsenic mobilization from illuminated flooded arsenic-enriched soils

This study examined the role of intermittent illumination/dark conditions coupled with MnO₂-ammendments to regulate the mobility of As and Fe in flooded arsenic-enriched soils. Addition of MnO₂ particles with intermittent illumination led to a pronounced increase in the reductive-dissolution of Fe(III) and As(V) from flooded soils compared to a corresponding dark treatments. A higher MnO₂ dosage (0.10 vs 0.02 g) demonstrated a greater effect. Over a 49-day incubation, maximum Fe concentrations mobilized from the flooded soils amended with 0.10 and 0.02 g MnO₂ particles were 2.39 and 1.85-fold higher than for non-amended soils under dark conditions. The corresponding maximum amounts of mobilized As were at least 92 % and 65 % higher than for non-amended soils under dark conditions, respectively. Scavenging of excited holes by soil humic/fulvic compounds increased mineral photoelectron production and boosted Fe(III)/As(V) reduction in MnO₂-amended, illuminated soils. Additionally, MnO₂ amendments shifted soil microbial community structure by enriching metal-reducing bacteria (e.g., Anaeromyxobacter, Bacillus and Geobacter) and increasing c-type cytochrome production. This microbial diversity response to MnO₂ amendment facilitated direct contact extracellular electron transfer processes, which further enhanced Fe/As reduction. Subsequently, the mobility of released Fe(II) and As(III) was partially attenuated by adsorption, oxidation, complexation and/or coprecipitation on active sites generated on MnO₂ surfaces during MnO₂ dissolution. These results illustrated the impact of a semiconducting MnO₂ mineral in regulating the biogeochemical cycles of As/Fe in soil and demonstrated the potential for MnO₂-based bioremediation strategies for arsenic-polluted soils.

Effects of Dissolved Organic Matter on the Bioavailability of Heavy Metals During Microbial Dissimilatory Iron Reduction: A Review

Dissolved organic matter (DOM), a type of mixture containing complex structures and interactions, has important effects on environmental processes such as the complexation and interface reactions of soil heavy metals. Furthermore, microbial dissimilatory iron reduction (DIR), a key process of soil biogeochemical cycle, is closely related to the migration and transformation of heavy metals and causes the release of DOM by carbon-ferrihydrite associations. This chapter considers the structural properties and characterization techniques of DOM and its interaction with microbial dissimilated iron. The effect of DOM on microbial DIR is specifically manifested as driving force properties, coprecipitation, complexation, and electronic shuttle properties. The study, in addition, further explored the influence of pH, microorganisms, salinity, and light conditions, mechanism of DOM and microbial DIR on the toxicity and bioavailability of different heavy metals. The action mechanism of these factors on heavy metals can be summarized as adsorption coprecipitation, methylation, and redox. Based on the findings of the review, future research is expected to focus on: (1) The combination of DOM functional group structure analysis with high-resolution mass spectrometry technology and electrochemical methods to determine the electron supply in the mechanism of DOM action on DIR; (2) Impact of DOM on differences in structure and functions of plant rhizosphere in heavy metal contaminated soil; and (3) Bioavailability of DOM-dissociative iron-reducing bacteria-heavy metal ternary binding on rhizosphere heavy metals under dynamic changes of water level from the perspective of the differences in DOM properties, such as polarity, molecular weight, and functional group.

Arsenic dynamics in paddy soil under traditional manuring practices in Bangladesh

Fertilization with organic matter (farm yard manure and/or rice straw) is thought to enhance arsenic (As) mobilization into soil porewaters, with subsequent As assimilation by rice roots leading to enhanced translocation to the grain. Here, interlinked experiments (field manuring and soil batch culture) were conducted to find the effect of organic matter at a field application rate practiced in Bangladesh (5 t/ha) on As mobilization in soil for paddies impacted by As contaminated groundwater irrigation, a widespread phenomenon in Bangladesh where the experiments were conducted. Total As concentration in a paddy soil (Sonargaon) ranged from 21.9 to 8.1 mg/kg down the soil profile and strongly correlated with TOC content. Arsenic, Fe, Mn, and DOC release into soil solution, and As speciation, are intimately linked to OM amendment, soil depth and temporal variation. Organic matter amendments lead to increased mobilization of As into both soil porewaters and standing surface waters. The As speciation in the porewater was dominated by inorganic As (As_i) (arsenite and arsenate), with traces amounts of methylated species (DMA^V and MMA^V) only being found with OM amendment. It was noted in field trials that OM fertilization greatly enhanced As mobility to surface waters, which may have major implications for the fate of As in paddy agronomic ecosystems.

Cadmium sulfide nanoparticles-assisted intimate coupling of microbial and photoelectrochemical processes: Mechanisms and environmental applications

Intimate coupling of microbial extracellular electron transfer (EET) and photoelectrochemical processes is an emerging research area with great potential to circumvent many disadvantages associated with traditional techniques that depend on independent microbial or photocatalysis treatment. Microbial EET processes involve microorganism oxidation of extracellular electron donors for respiration and synchronous reduction of extracellular electron acceptors to form an integrated respiratory chain. Coupled microbial EET-photoelectrochemical technologies greatly improve energy conversion efficiency providing both economic and environmental benefits. Among substitutes for semiconductor photocatalysts, cadmium sulfide nanoparticles (CdS NPs) possess several attractive properties. Specifically, CdS NPs have suitable electrical conductivity, large specific surface area, visible light-driven photocatalysis capability and robust biocompatibility, enabling them to promote hybrid microbial-photoelectrochemical processes. This review highlights recent advances in intimately coupled CdS NPs-microbial extracellular electron transfer systems and examines the mechanistic pathways involved in photoelectrochemical transformations. Finally, the prospects for emerging applications utilizing hybrid CdS NPs-based microbial-photoelectrochemical technologies are assessed. As such, this review provides a rigorous fundamental analysis of electron transport dynamics for hybrid CdS NPs-microbial photoelectrochemical processes and explores the applicability of engineered CdS NPs-biohybrids for future applications, such as in environmental remediation and clean-energy production.

Microbes involved in arsenic mobilization and respiration: a review on isolation, identification, isolates and implications

Microorganisms play an important role in arsenic (As) cycling in the environment. Microbes mobilize As directly or indirectly, and natural/geochemical processes such as sulphate and iron reduction, oxidative sulphide mineral dissolution, arsenite (AsO₃^3-) oxidation and arsenate (AsO₄^3-) respiration further aid in As cycle in the environment. Arsenate serves as an electron donor for the microbes during anaerobic conditions in the sediment. The present work reviews the recent development in As contamination, various As-metabolizing microbes and their phylogenetic diversity, to understand the role of microbial communities in As respiration and mobilization. It also summarizes the contemporary understanding of the intricate biochemistry and molecular biology of natural As metabolisms. Some successful examples of engineered microbes by harnessing these natural mechanisms for effective remediation are also discussed. The study indicates that there is an exigent need to have a clear understanding of environmental aspects of As mobilization and subsequent oxidation-reduction by a suitable microbial consortium.

Effects of biofilm transfer and electron mediators transfer on Klebsiella quasipneumoniae sp. 203 electricity generation performance in MFCs

BACKGROUND

Extracellular electron transfer (EET) is essential in improving the power generation performance of electrochemically active bacteria (EAB) in microbial fuel cells (MFCs). Currently, the EET mechanisms of dissimilatory metal-reducing (DMR) model bacteria Shewanella oneidensis and Geobacter sulfurreducens have been thoroughly studied. Klebsiella has also been proved to be an EAB capable of EET, but the EET mechanism has not been perfected. This study investigated the effects of biofilm transfer and electron mediators transfer on Klebsiella quasipneumoniae sp. 203 electricity generation performance in MFCs.

RESULTS

Herein, we covered the anode of MFC with a layer of microfiltration membrane to block the effect of the biofilm mechanism, and then explore the EET of the electron mediator mechanism of K. quasipneumoniae sp. 203 and electricity generation performance. In the absence of short-range electron transfer, we found that K. quasipneumoniae sp. 203 can still produce a certain power generation performance, and coated-MFC reached 40.26 mW/m2 at a current density of 770.9 mA/m2, whereas the uncoated-MFC reached 90.69 mW/m2 at a current density of 1224.49 mA/m2. The difference in the electricity generation performance between coated-MFC and uncoated-MFC was probably due to the microfiltration membrane covered in anode, which inhibited the growth of EAB on the anode. Therefore, we speculated that K. quasipneumoniae sp. 203 can also perform EET through the biofilm mechanism. The protein content, the integrity of biofilm and the biofilm activity all proved that the difference in the electricity generation performance between coated-MFC and uncoated-MFC was due to the extremely little biomass of the anode biofilm. To further verify the effect of electron mediators on electricity generation performance of MFCs, 10 µM 2,6-DTBBQ, 2,6-DTBHQ and DHNA were added to coated-MFC and uncoated-MFC. Combining the time-voltage curve and CV curve, we found that 2,6-DTBBQ and 2,6-DTBHQ had high electrocatalytic activity toward the redox reaction of K. quasipneumoniae sp. 203-inoculated MFCs. It was also speculated that K. quasipneumoniae sp. 203 produced 2,6-DTBHQ and 2,6-DTBBQ.

CONCLUSIONS

To the best of our knowledge, the three modes of EET did not exist separately. K. quasipneumoniae sp.203 will adopt the corresponding electron transfer mode or multiple ways to realize EET according to the living environment to improve electricity generation performance.

The effects of biochar as the electron shuttle on the ferrihydrite reduction and related arsenic (As) fate

The effects of electron shuttles (biochar/anthraquinone-2,6-disulphonate (AQDS)) on the process of the Shewanella oneidensis MR-1-induced As(V)-adsorbed ferrihydrite reduction were studied. The results showed that biochar could stimulate Fe(Ⅱ) and As release during the ferrihydrite bioreduction. After the addition of biochar, more dissolved organic matter (DOM) can be consumed as an electron donor to promote the metabolism of microorganisms by the fluorescence excitation-emission matrix spectra analysis. After microbial treatment, cyclic voltammetry (CV) showed that a unique cathodic peak and a distinct anodic peak appeared, which may represent the reduction of Fe(OH)₃ to Fe(OH)₂ and the complexed oxidation of Fe²⁺ to Fe³⁺. No characteristic peak was associated with arsenate reduction or arsenite oxidation. The mineralogical characterization of the final products indicated that AQDS can promote solid-state conversion from ferrihydrite to vivianite (Fe₃(PO₄)₂·8H₂O). However, the addition of biochar inhibited solid-state conversion of ferrihydrite. It was shown that after 6 d, the secondary mineral vivianite production in the bacteria alone and AQDS treatments was 8.12% and 15.6% respectively by mössbauer spectroscopy analysis. Moreover, the XPS indicated that As(V) has no species transformation. It provided new data for understanding the iron-reducing bacteria induced mineralization process and related biogeochemical cycles of Fe and As.

Shewanella oneidensis MR-1 impregnated Ca-alginate capsule for efficient Cr(VI) reduction and Cr(III) adsorption

Shewanella oneidensis MR-1 (MR-1)-impregnated alginate capsules with 3D porous structure were prepared through cation crossing-linking and was used for the Cr(VI) reduction and removal. After being encapsulated by alginate, the endurance of the MR-1 was largely enhanced under conditions of high Cr(VI) concentrations (up to 4 mM) and low pH (pH 5). The Cr(VI) reduction over the MR-1-impregnated alginate capsules could be fitted by pseudo first-order kinetic model. With the Cr(VI) initial concentration increasing from 1 to 4 mM, the first-order rate constant for the encapsulated MR-1 (k_capsules) and free cells (k_cells) fell by 26.3% and 82.4%, respectively. At pH 5, the k_capsules value was 0.19 h^{- 1}, which was about 3.7 times higher than k_cells. Moreover, the encapsulated MR-1 held 90.5% of the Cr(VI) reduction ability after 15 days of resting time, while the free MR-1 held 19.7%. After bioreduction, 73.6% of total chromium was adsorbed on the MR-1 impregnated Ca-alginate capsules. XPS results showed 85% of the adsorbed chromium was Cr(III). The mechanism for chromium removal over the MR-1-impregnated Ca-alginate capsules was proposed with the following steps: (1) Cr(VI) was bioreduced via the encapsulated MR-1; (2) the reduced soluble Cr(III) was adsorbed by alginate selectively. In the study, the Ca-alginate shell of the cabbage-like MR-1 impregnated capsules could be a shelter for encapsulated MR-1 to endure unfavorable conditions (e.g., low pH and high concentration of Cr(VI)) and immobilize the soluble chromium. Considering the obtained capsules derived from biomolecules were environment-friendly, the MR-1-impregnated Ca-alginate capsules were potential for the application in the remediation of environmental pollution. Graphical abstract.

Microbial driven iron reduction affects arsenic transformation and transportation in soil-rice system

The microbe-driven iron cycle plays an important role in speciation transformation and migration of arsenic (As) in soil-rice systems. In this study, pot experiments were used to investigate the effect of bacterial iron (Fe) reduction processes in soils on As speciation and migration, as well as on As uptake in soil-rice system. During the rice growth period, pH and electrical conductivity (EC) in soil solutions initially increased and then decreased, with the ranges of 7.4-8.8 and 116.3-820 mS cm^-1, respectively. The concentrations of Fe, total As and As(III) showed an increasing trend in the rhizosphere and non-rhizosphere soil solutions with the increasing time. Fe concentrations were significantly positively correlated with total As and As(III) concentrations (***p < 0.001) in the soil solutions. The abundances of the arsenate reductase gene (arsC) and the As(III) S-adenosylmethionine methyltransferase gene (arsM) in rhizosphere soils were higher than those in non-rhizosphere soils, while the abundance of the Fe-reducing bacteria (Geo) showed an opposite trend. Moreover, it showed that the Geo abundance was significantly positively correlated with that of the arsC (***p < 0.001) and arsM (**p < 0.01) genes, respectively. The abundances of Geo, arsC and arsM genes were significantly positively correlated with the concentrations of Fe, total As and As(III) in the soil solutions (*p < 0.05). Moreover, the abundances of arsC and arsM genes were significantly negatively correlated with total As and As(III) in rice grains (*P < 0.05). These results showed that the interaction of bacterial Fe reduction process and radial oxygen loss from roots promoted the reduction and methylation of As, and then decreased As uptake by rice, which provided a theoretical basis for alleviating As pollution in paddy soils.

Freezing Facilitates Formation of Silver Nanoparticles under Natural and Simulated Sunlight Conditions

Freezing is essential in the light-mediated transformation of organic pollutants. However, the effects of the freezing process on the reduction of Ag⁺ by natural organic matter (NOM) remains unclear, causing significant uncertainties in the natural formation of silver nanoparticles (AgNPs). This study investigated the sunlight-induced reduction of Ag⁺ by NOM under natural or controlled freezing processes. Natural (outdoor) freezing experiments demonstrated intense aggregation and precipitation of AgNPs in three aqueous media, including a NOM solution and two river water samples, under natural sunlight irradiation. Indoor experiments under simulated sunlight irradiation and controlled freezing processes showed that freezing at -20 °C and repeated freeze-thaw cycles (-20 to 4 °C) drastically accelerated the formation and growth of AgNPs compared to maintenance at 4 °C. Finally, under the natural freezing process, commercial AgNPs were found to influence the redox reduction of Ag⁺ probably through a reduction in dissolution rates and homoaggregation with AgNPs newly formed in the river water samples. Additionally, the enhancement effect of freezing on AgNP formation was confirmed in the presence of Ag⁺ and AgNPs both at environmentally relevant concentration levels, especially upon light irradiation. This work emphasizes the importance of freezing processes on the natural formation of AgNPs.

A review of arsenic interfacial geochemistry in groundwater and the role of organic matter

Recent discoveries on arsenic (As) biogeochemistry in aquifer-sediment system have strongly improved our understanding of As enrichment mechanisms in groundwater. We summarize here the research results since 2015 focusing on the As interfacial geochemistry including As speciation, transformation, and mobilization. We discuss the chemical extraction and speciation of As in environmental matrices, followed by As redox change and (im)mobilization in typical minerals and aquifer system. Then, the microbial-assisted reductive dissolution of Fe (hydr)oxides and As transformation and liberation are summarized from the aspects of bacterial isolates, microbial community and gene analysis by comparing As rich groundwater cases worldwide. Finally, the potential effect of organic matter on As interfacial geochemistry are addressed in the aspects of chemical interactions and microbial respiring activities for Fe and As reductive release.

Evaluation and correction on quinones' quantification errors: Derived from the coexistence of different quinone species and pH-sensitive feature

Quinones are becoming an essential tool for refractory organics treatment, while their quantification may be not well-considered. In this paper, two kinds of potential errors in quantification were evaluated in multiple pH conditions. They were derived from the coexistence of oxidized/reduced quinone species (Type I) and pH-sensitive feature (Type II), respectively. These errors would remarkably influence the accuracy of quantification while they haven't been emphasized. Thus, to elaborate the relationship between the two types of errors and the absorbance or pH conditions, three typical quinones [Anthraquinone-1-sulfonate (α-AQS), anthraquinone-2,6-disulfonate (AQDS) and lawsone] were selected and their acid dissociation coefficients (pKa) as well as UV-Vis spectra were determined. Results revealed that, for Type I, the relative error (RE) of α-AQS concentration would exceed the limit (5%) when reduced α-AQS was below 48% of total α-AQS. Similar results were found for lawsone. However, the RE can be eliminated by the equation established in this paper. For Type II, the pH-sensitive feature was related to the pKa values of quinones. Absorbances of α-AQS and lawsone would change remarkably with pH variation. Therefore, a model for correction was established. Analog data showed high consistency with experimental data [r = 0.995 (n = 25, p < 0.01) and r = 0.997 (n = 36, p < 0.01), for lawsone and α-AQS respectively]. Especially, the determination of AQDS concentrations was noticed to be pH-independent at 437 nm under pH 4.00 to 9.18 conditions. Based on these features, a comprehensive data solution was proposed for handling these errors.

Humic Substances Facilitate Arsenic Reduction and Release in Flooded Paddy Soil

Organic matter is important for controlling arsenic reduction and release under anoxic conditions. Humic substances (HS) represent an important fraction of natural organic matter, yet the manner in which HS affect arsenic transformation in flooded paddy soil has not been thoroughly elucidated. In this study, anaerobic microcosms were established with arsenic-contaminated paddy soil and amended with three extracted humic fractions (fulvic acid, FA; humic acid, HA; and humin, HM). The HS substantially enhanced the extent of arsenic reduction and release in the order FA > HA > HM. It was confirmed that microbially reduced HS acted as an electron shuttle to promote arsenate reduction. HS, particularly FA, provided labile carbon to stimulate microbial activity and increase the relative abundances of Azoarcus, Anaeromyxobacter, and Pseudomonas, all of which may be involved in the reduction of HS, Fe(III), and arsenate. HS also increased the abundance of transcripts for an arsenate-respiring gene ( arrA) and overall transcription in arsenate-respiring Geobacter spp. The increase in both abundances lagged behind the increases in dissolved arsenate levels. These results help to elucidate the pathways of arsenic reduction and release in the presence of HS in flooded paddy soil.

Intermittent light and microbial action of mixed endogenous source DOM affects degradation of 17β-estradiol day after day in a relatively deep natural anaerobic aqueous environment

All kinds of wastewaters containing steroid estrogens (SEs) and mixed endogenous source dissolved organic matter (DOM) enter natural water environments with intermittent illumination where microbial action occurs in a relatively deep natural aqueous environment. The role of mixed endogenous source DOM in SEs' biodegradation and photochemical degradation in such environments was studied using 17β-estradiol (E2) in laboratory experiments under anaerobic conditions. The experimental results show that microbial action can improve the optical properties and electron transfer capability of mixed endogenous source DOM, promoting photodegradation and biodegradation. Intermittent illumination attenuates DOM's electron transfer capacity and its chromophore groups, but it improves the bioavailability of low molecular weight dissolved organic matter which promotes microbial growth under anaerobic conditions. DOM-mediated co-degradation by light and microbial action over three days was better than either individually. The presence of Fe(III) promoted electron transfer, and Fe(III)-DOM complexes accelerated energy transfer under irradiation, enhancing photodegradation. Any remaining estrogens will continue to degrade, most effectively in well-aerated waters with sufficient illumination.

Enhanced removal of Cr(VI) by biochar with Fe as electron shuttles

Biochar is extensively used as an effective soil amendment for environmental remediation. In addition to its strong contaminant sorption capability, biochar also plays an important role in chemical transformation of contaminant due to its inherent redox-active moieties. However, the transformation efficiency of inorganic contaminants is generally very limited when the direct adsorption of contaminants on biochar is inefficient. The present study demonstrates the role of Fe ion as an electron shuttle to enhance Cr(VI) reduction by biochars. Batch experiments were conducted to examine the effects of Fe(III) levels, pyrolysis temperature of biochar, initial solution pH, and biochar dosage on the efficiency of Cr(VI) removal. Results showed a significant enhancement in Cr(VI) reduction with an increase in Fe(III) concentration and a decrease of initial pH. Biochar produced at higher pyrolysis temperatures (e.g., 700°C) favored Cr(VI) removal, especially in the presence of Fe(III), while a higher biochar dosage proved unfavorable likely due to the agglomeration or precipitation of biochar. Speciation analysis of Fe and Cr elements on the surface of biochar and in the solution further confirmed the role of Fe ion as an electron shuttle between biochar and Cr(VI). The present findings provide a potential strategy for the advanced treatment of Cr(VI) at low concentrations as well as an insight into the environmental fate of Cr(VI) and other micro-pollutants in soil or aqueous compartments containing Fe and natural or engineered carbonaceous materials.

Maghemite (γ-Fe2O3) nanoparticles enhance dissimilatory ferrihydrite reduction by Geobacter sulfurreducens: Impacts on iron mineralogical change and bacterial interactions

Microbially mediated bioreduction of iron oxyhydroxide plays an important role in the biogeochemical cycle of iron. Geobacter sulfurreducens is a representative dissimilatory iron-reducing bacterium that assembles electrically conductive pili and cytochromes. The impact of supplementation with γ-Fe₂O₃ nanoparticles (NPs) (0.2 and 0.6 g) on the G. sulfurreducens-mediated reduction of ferrihydrite was investigated. In the overall performance of microbial ferrihydrite reduction mediated by γ-Fe₂O₃ NPs, stronger reduction was observed in the presence of direct contact with γ-Fe₂O₃ NPs than with indirect contact. Compared to the production of Fe(II) derived from biotic modification with ferrihydrite alone, increases greater than 1.6- and 1.4-fold in the production of Fe(II) were detected in the biotic modifications in which direct contact with 0.2 g and 0.6 g γ-Fe₂O₃ NPs, respectively, occurred. X-ray diffraction analysis indicated that magnetite was a unique representative iron mineral in ferrihydrite when active G. sulfurreducens cells were in direct contact with γ-Fe₂O₃ NPs. Because of the sorption of biogenic Fe(II) onto γ-Fe₂O₃ NPs instead of ferrihydrite, the addition of γ-Fe₂O₃ NPs could also contribute to increased duration of ferrihydrite reduction by preventing ferrihydrite surface passivation. Additionally, electron microscopy analysis confirmed that the direct addition of γ-Fe₂O₃ NPs stimulated the electrically conductive pili and cytochromes to stretch, facilitating long-range electron transfer between the cells and ferrihydrite. The obtained findings provide a more comprehensive understanding of the effects of iron oxide NPs on soil biogeochemistry.

Promoting nitrogen removal during Fe(III) reduction coupled to anaerobic ammonium oxidation (Feammox) by adding anthraquinone-2,6-disulfonate (AQDS)

Feammox, i.e., Fe(III) reduction coupled to anaerobic ammonium oxidation, is a potential alternative to ammonium removal in natural and artificial ecosystems. However, the efficiency of Feammox is quite low to restrain its practical application in wastewater/solid disposal. In this study, three batch experiments, including control (Fe₂O₃/AQDS-free), Fe₂O₃ group (25 mM Fe₂O₃ only) and AQDS-Fe₂O₃ group (25 mM Fe₂O₃ and 0.6 mM AQDS), were conducted in 200 mL serum vials to explore whether AQDS can promote Feammox. Results showed that the nitrogen removal efficiency of the AQDS-Fe₂O₃ group was 82.6%, compared with 64.3% of the Fe₂O₃ group and 46.0% in the control. AH₂QDS, the reduced state of AQDS, was detected in the AQDS-Fe₂O₃ group. Another experiment indicated that AH₂QDS was oxidized back to AQDS by Fe₂O₃. These results suggested that AQDS/AH₂QDS had been serving as electron shuttles between ammonium and Fe₂O₃ to successively forward the oxidation of NH₄⁺. X-ray diffraction analysis showed that new Fe(III) species were found in the systems, implying that a Fe(II)/Fe(III) cycle also occurred. In agreement, both iron-reducing and oxidizing bacteria were detected in the systems.

Phosphogypsum stabilization of bauxite residue: Conversion of its alkaline characteristics

Reduction of the high alkalinity of bauxite residue is a key problem to solve to make it suitable for plant growth and comprehensive utilization. In this study, phosphogypsum, a waste product from the phosphate fertilizer industry, was used to drive the alkaline transformation of the bauxite residue. Under optimal water washing conditions (liquid/solid ratio of 2 mL/g, 30°C, 24 hr), the impact of quantity added, reaction time and reaction mechanism during phosphogypsum application were investigated. Phosphogypsum addition effectively lowered pH levels and reduced the soluble alkalinity by 92.2%. It was found that the concentration of soluble Na and Ca ions in the supernatant increased gradually, whilst the exchangeable Na⁺ and Ca²⁺ in solid phase changed 112 mg/kg and 259 mg/kg, respectively. Ca²⁺ became the dominant element in the solid phase (phosphogypsum addition of 2%, liquid/solid ratio of 2 mL/g, 30°C, 12 hr). X-ray diffraction data indicated that cancrinite and hydrogarnet were the primary alkaline minerals. SEM images suggested that phosphogypsum could promote the formation of stable macro-aggregates, whilst the content of Ca²⁺ increased from 5.6% to 18.2% and Na reduced from 6.8% to 2.4%. Treatment with phosphogypsum could significantly promote the transformation of alkalinity cations by neutralization, precipitation and replacement reactions. This research provided a feasible method to promote soil formation of bauxite residue by phosphogypsum amendment.

Influence of monsoonal recharge on arsenic and dissolved organic matter in the Holocene and Pleistocene aquifers of the Bengal Basin

Arsenic (As) mobilization in the Bengal Basin aquifers has been studied for several decades due to the complex redox bio-geochemistry, dynamic hydrogeology and complex nature of dissolved organic matter (DOM). Earlier studies have examined the changes in groundwater As in the dry season before monsoon and during the wet season after monsoonal recharge. To investigate the more immediate influence of recharge during the active monsoon period on As mobilization and DOM character, groundwater samples were analyzed in the pre-monsoon and during the active monsoon period. Groundwater samples were collected from shallow (<40 m) and deep (>40 m) tube-wells in West Bengal, India. Dissolved As_T in shallow groundwater ranged from 50 to 315 μg/L exceeding the WHO guideline of 10 μg/L. Shallow groundwater also showed high total dissolved nitrogen, carbon to nitrogen (C:N) <1, and humic-like DOM with a humic:protein ratio >1. By contrast, deep groundwaters contained As_T between 0.5 and 11 μg/L with carbonaceous and protein-like DOM, C:N >1, and humic:protein <1. Stable isotopes of δ¹⁸O and δ²H and Cl/Br results indicated three recharge scenarios in the shallow aquifer including direct recharge of dilute rainwater, evaporated surface water, and anthropogenically impacted surface water. Monsoonal recharge did not cause notable changes in As_T in deep or shallow groundwater, including two As hotspots in the Pleistocene aquifer. However, the monsoon did result in a two-fold decrease in SUVA₂₅₄, increase in nitrite and nitrate in the shallow groundwater. The DOM in the deep groundwater at the two As hotspots (with As_T 132 and 715 μg/L) had optical properties with much greater humic-like DOM than the surrounding groundwater, which had low As_T and highly protein-like DOM. Overall, these results support that protein-like DOM associated with low groundwater As concentrations and suggest that the monsoonal influence on nitrate and nitrite is limited to shallow aquifers.

Dissolution of realgar by Acidithiobacillus ferrooxidans in the presence and absence of zerovalent iron: Implications for remediation of iron-deficient realgar tailings

Realgar (As₄S₄)-rich tailings are iron-deficient arsenical mine wastes. The mechanisms and products of the dissolution of realgar by Acidithiobacillus ferrooxidans (A. ferrooxidans) in the presence (0.2 g and 2 g) and absence of zerovalent iron (ZVI) are investigated for three stages (each of 7 d with fresh A. ferrooxidans medium addition between the stages). SEM-EDX, FTIR, XPS and selective extraction analysis are used to characterize the solid-phase during the experiments. ZVI addition causes the systems to become more acid-generating, although pH increases are observed in the first day due to ZVI dissolution. Arsenic is released to solution due to realgar oxidation (∼30 mg L^-1 in the 0 g ZVI system in Stage I), but low concentrations are observed in the ZVI-added systems (<5 mg L^-1) and in Stages II and III of the 0 g ZVI system. As(III) dominates the released As(T) at day 1 (83-89% of As(T)), but is largely oxidized to As(V) at day 7 of each stage (53-98% of As(T)). Arsenic attenuation is attributed to the formation of mixed As-Fe oxyhydroxides and oxyhydroxy sulfates that take up released arsenic and are abundant in the 2.0 g ZVI system, and to passivation of the realgar surface. Consequently, a new strategy that combines A. ferrooxidans and exogenous ZVI addition for treating in-situ iron-deficient realgar-rich tailings is proposed, although its long-term effects need to be monitored.