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Xu Z, Tsang DC. Mineral-mediated stability of organic carbon in soil and relevant interaction mechanisms. ECO-ENVIRONMENT & HEALTH (ONLINE) 2024; 3:59-76. [PMID: 38318344 PMCID: PMC10840363 DOI: 10.1016/j.eehl.2023.12.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 11/24/2023] [Accepted: 12/13/2023] [Indexed: 02/07/2024]
Abstract
Soil, the largest terrestrial carbon reservoir, is central to climate change and relevant feedback to environmental health. Minerals are the essential components that contribute to over 60% of soil carbon storage. However, how the interactions between minerals and organic carbon shape the carbon transformation and stability remains poorly understood. Herein, we critically review the primary interactions between organic carbon and soil minerals and the relevant mechanisms, including sorption, redox reaction, co-precipitation, dissolution, polymerization, and catalytic reaction. These interactions, highly complex with the combination of multiple processes, greatly affect the stability of organic carbon through the following processes: (1) formation or deconstruction of the mineral-organic carbon association; (2) oxidative transformation of the organic carbon with minerals; (3) catalytic polymerization of organic carbon with minerals; and (4) varying association stability of organic carbon according to the mineral transformation. Several pieces of evidence related to the carbon turnover and stability during the interaction with soil minerals in the real eco-environment are then demonstrated. We also highlight the current research gaps and outline research priorities, which may map future directions for a deeper mechanisms-based understanding of the soil carbon storage capacity considering its interactions with minerals.
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Affiliation(s)
- Zibo Xu
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
| | - Daniel C.W. Tsang
- Department of Civil and Environmental Engineering, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, China
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2
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Wang J, Wu Y, Zhang C, Geng A, Sun Z, Yang J, Xi J, Wang L, Yang B. Effect of weak electrical stimulation on m-dichlorobenzene biodegradation in biotrickling filters: Insights from performance and microbial community analysis. BIORESOURCE TECHNOLOGY 2023; 390:129881. [PMID: 37852508 DOI: 10.1016/j.biortech.2023.129881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 10/14/2023] [Accepted: 10/14/2023] [Indexed: 10/20/2023]
Abstract
The microbial electrolysis cell coupled with the biotrickling filters (MEC-BTF) was developed for enhancing the biodegradation of gaseous m-dichlorobenzene (m-DCB) through weak electrical stimulation. The maximum removal efficiency and elimination capacity in MEC-BTF were 1.48 and 1.65 times higher than those in open-circuit BTF (OC-BTF), respectively. Weak electrical stimulation had a positive impact on the characteristics of the biofilm. Additionally, microbial community analysis revealed that weak electrical stimulation increased the abundance of key functional genera (e.g., Rhodanobacter and Bacillus) and genes (e.g., catA/E and E1.3.1.32), thereby accelerating reductive dechlorination and ring-opening of m-DCB. Macrogenomic sequencing further revealed that electron transfer pathway in MEC-BTF might be mediated through extracellular electroactive mediators and cytochromes.
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Affiliation(s)
- Jiajie Wang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Yu Wu
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Xuzhou 221116, China
| | - Caiyun Zhang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Anqi Geng
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Zhuqiu Sun
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Jiawei Yang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China
| | - Jinying Xi
- Environmental Simulation and Pollution Control State Key Joint Laboratory, School of Environment, Tsinghua University, Beijing 100084, China
| | - Liping Wang
- School of Environment Science and Spatial Informatics, China University of Mining and Technology, Xuzhou 221116, China
| | - Bairen Yang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng 224051, China.
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3
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Zou C, Wang M, Chen Y, Qin Y, Zhao Y, Qiao L, Zhu S, Chen T, Yuan Y. Effects of different cathodic potentials on performance, microbial community structure and function for bioelectrochemical-stimulated dechlorination of 2,4,6-trichlorophenol in sediments. ENVIRONMENTAL RESEARCH 2023; 216:114477. [PMID: 36202244 DOI: 10.1016/j.envres.2022.114477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Revised: 09/27/2022] [Accepted: 09/29/2022] [Indexed: 06/16/2023]
Abstract
Bioelectrochemical systems with biocathodes constitute a promising means to enhance the biological dechlorination of 2,4,6-trichlorophenol (2,4,6-TCP) in constructed wetland (CW) sediments. However, the effect of different cathodic potentials on the structure and function of 2,4,6-TCP-reducing biocathode communities in CW sediments is largely unknown. Here, we evaluated the performance and microbial community structure of 2,4,6-TCP-reducing biocathode systems at different cathodic potentials (- 0.5, - 0.7, - 0.9, and - 1.1 V vs. saturated calomel electrode). The dechlorination efficiency of 2,4,6-TCP with the biocathode relatively increased by 16.02%-33.17% compared to that in the open circuit. The highest 2,4,6-TCP dechlorination efficiency (92.34 ± 0.86%) was observed at - 0.7 V in sediment, which may be due to the highest abundance of functional genera (e.g., Pseudomonas, Spirochaeta) at - 0.7 V. Metagenomic analysis provided new insights into the metabolic potential of microorganisms in CW sediments and suggested possible 2,4,6-TCP conversion pathways in sediments. 2,4,6-TCP was gradually dechlorinated to form 4-chlorophenol, followed by a ring-opening step via the activities of chlorophenol reductive dehalogenase and oxygenase (e.g., cprA, tfdB). Interestingly, micro-electrical stimulation enhanced the expression of chlorophenol reductive dehalogenase (cprA). Therefore, our findings at the molecular and gene expression levels provide insights into the effects of different cathodic potentials on the performance and community structure of 2,4,6-TCP-reducing biocathode systems in CW sediments.
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Affiliation(s)
- Chao Zou
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China; Wuxi Huicheng Water Group Co., Ltd, Wuxi, 214174, PR China
| | - Mansi Wang
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Yixin Chen
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Yu Qin
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Yun Zhao
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Liang Qiao
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Shasha Zhu
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China
| | - Tianming Chen
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
| | - Ye Yuan
- School of Environmental Science and Engineering, Yancheng Institute of Technology, Yancheng, 224051, PR China; Jiangsu Province Engineering Research Center of Intelligent Environmental Protection Equipment, Yancheng Institute of Technology, Yancheng, 224051, PR China.
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4
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Su G, Wang Y, Ma B, Deng F, Lin D. Nanoscale zero-valent iron changes microbial co-occurrence pattern in pentachlorophenol-contaminated soil. JOURNAL OF HAZARDOUS MATERIALS 2022; 438:129482. [PMID: 35785734 DOI: 10.1016/j.jhazmat.2022.129482] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Revised: 06/24/2022] [Accepted: 06/25/2022] [Indexed: 06/15/2023]
Abstract
Nanoscale zero-valent iron (nZVI) is a prominent nanomaterial for the remediation of organochlorine-contaminated soil and groundwater. However, a knowledge gap regarding the effects of the coexistence of nZVI and pollutants on soil microorganisms remains. Here, we studied the effects of nZVI on the microbial community structure, co-occurrence network, and keystone taxa in pentachlorophenol (PCP, a typical organochlorine pesticide) contaminated soils. The addition of nZVI (1000 mg/kg) had no obvious recovery effect on the microbial community structure of PCP-contaminated soil, but enhanced the connection and lowered the modularity of the microbial network. These changes were mainly present in the bacterial network rather than in the fungal or archaeal network. Moreover, the addition of nZVI increased the number of keystone taxa in the PCP-contaminated soil from 29 to 76. These keystone taxa are related to the degradation of organochlorine pollutants, carbon metabolism, and nitrogen metabolism and may thus be helpful in recovering soil ecological functions. These findings provide new insights into the interaction among nanomaterials, microorganisms, and pollutants.
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Affiliation(s)
- Gangping Su
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Yanlong Wang
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Bin Ma
- Institute of Soil, Water Resource, and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Fucai Deng
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China; Guangdong Provincial Key Laboratory of Petrochemical Pollution Process and Control, School of Environmental Science and Engineering, Guangdong University of Petrochemical Technology, Maoming 525000, China.
| | - Daohui Lin
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China.
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Gan CD, Cui SF, Wu ZZ, Yang JY. Multiple heavy metal distribution and microbial community characteristics of vanadium-titanium magnetite tailing profiles under different management modes. JOURNAL OF HAZARDOUS MATERIALS 2022; 429:128032. [PMID: 35077965 DOI: 10.1016/j.jhazmat.2021.128032] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 11/27/2021] [Accepted: 12/06/2021] [Indexed: 06/14/2023]
Abstract
Vanadium-titanium (V-Ti) magnetite tailings have caused great concern due to their safety hazards and environmental risks. However, the microbial community structure and the key geochemical factors of V-Ti magnetite tailing profiles under different management modes remain unclear. Therefore, we investigated the heavy metal distribution and the microbial community structure of the soils and tailings at varied depths of V-Ti magnetite tailing profiles with and without soil coverage. The results indicated that the topsoil covering measures retarded the acidification of tailings during stockpiling. However, As, Mn, and V in tailings have the ability to migrate to the overlying soil. Based on 16S rRNA gene amplicon sequencing, Proteobacteria was the dominant genus in the topsoil-covered tailings, whereas the most abundant genus in the exposed tailings was Betaproteobacteria. Furthermore, Rhodobacter, Hydrogenophaga, Novosphingobium, and Geobacter enriched in tailings may potentially contribute to V(V) biotransformation and the development of mine bioreremediation technologies. RDA and Spearman correlation analysis showed that pH, EC, Cd, Mn, Pb, and V were the main influencing factors regulating microbial community composition. Overall, this study provides insights for evaluating the soil covering management mode and the engineering applications of microbial technologies to manage V-Ti magnetite tailings.
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Affiliation(s)
- Chun-Dan Gan
- College of Architecture and Environment, Sichuan University, Chengdu 610065, China; Yibin Institute of Industrial Technology, Sichuan University Yibin Park, Yibin 644000, China
| | - Si-Fan Cui
- College of Architecture and Environment, Sichuan University, Chengdu 610065, China
| | - Zhen-Zhong Wu
- College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Jin-Yan Yang
- College of Architecture and Environment, Sichuan University, Chengdu 610065, China; Yibin Institute of Industrial Technology, Sichuan University Yibin Park, Yibin 644000, China.
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6
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Liu Y, Wang Y, Wu T, Xu J, Lin D. Synergistic Effect of Soil Organic Matter and Nanoscale Zero-Valent Iron on Biodechlorination. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:4915-4925. [PMID: 35389637 DOI: 10.1021/acs.est.1c05986] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Nanoscale zero-valent iron (nZVI) provides a promising solution for organochlorine (OC)-contaminated soil remediation. However, the interactions among nZVI, soil organic matter (SOM), and indigenous dechlorinating bacteria are intricate, which may result in unascertained effects on the reductive degradation of OCs and merits specific investigation. Herein, we isolated an indigenous dehalogenation bacterium (Burkholderia ambifaria strain L3) from a paddy soil and further investigated the biodechlorination of pentachlorophenol (PCP) with individual and a combination of SOM and nZVI. In comparison with individual-strain L3 treatment, the cotreatment with nZVI or SOM increased the removal efficiency of PCP from 34.4 to 44.3-54.2% after 15 day cultivation. More importantly, a synergistic effect of SOM and nZVI was observed on the PCP removal by strain L3, and the PCP removal efficiency reached up to 75.3-84.5%. Other than the biodegradation through ortho- and meta-substitution under the individual application of SOM or nZVI, PCP was further biodegraded to 2,4,6-trichlorophenol (TCP) through para-substitution by the isolated bacteria with the cotreatment of SOM and nZVI. The main roles of the nZVI-SOM cotreatment in the biodegradation included the SOM-facilitated microbial proliferation, the nZVI-promoted microbial transformation of SOM, and the induced higher electron transport capacity of redox Fe-PCP biocycling. These findings provide a novel insight into the action of nZVI in environmental remediations.
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Affiliation(s)
- Yangzhi Liu
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
- The Institute of Environment, Resources, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Yanlong Wang
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Ting Wu
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Jiang Xu
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Daohui Lin
- Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Department of Environmental Science, Zhejiang University, Hangzhou 310058, China
- Zhejiang Ecological Civilization Academy, Anji 313300, China
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7
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Fei Y, Zhang B, He J, Chen C, Liu H. Dynamics of vertical vanadium migration in soil and interactions with indigenous microorganisms adjacent to tailing reservoir. JOURNAL OF HAZARDOUS MATERIALS 2022; 424:127608. [PMID: 34749229 DOI: 10.1016/j.jhazmat.2021.127608] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/10/2021] [Accepted: 10/24/2021] [Indexed: 06/13/2023]
Abstract
Severe vanadium pollution in deep soil through surface infiltration during mining activities has been particularly concerned, but little is known about vanadium migration dynamics in vertical soil profile. Indigenous microorganisms widely exist in soil, however, their functions and suffered impacts during vertical vanadium migration have rarely been investigated. In this study, 100 cm height columns were constructed with undisturbed soil around vanadium tailing reservoir were constructed to describe vertical vanadium transport process and corresponding interactions between vanadium and indigenous microorganisms. 91 d continuous leaching with pentavalent vanadium [V(V)] showed that V(V) gradually downward migrated. Soil microorganisms slowed down vertical V(V) migration rate by transferring V(V) to insoluble tetravalent vanadium. Enriched Gemmatimonadaceae and Actinobacteria were identified to contribute to microbial V(V) transformation. Co-existing nitrate weakened the soil's ability to intercept V(V) via electron competition. Microbial communities were reshaped by vanadium during leaching, while enzyme activities increased slightly due to vanadium stimulation. This work advances the understanding of vertical vanadium migration characteristics in soil, which is essential to risk management and effective remediation of vanadium-polluted sites.
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Affiliation(s)
- Yangmei Fei
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Baogang Zhang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China.
| | - Jinxi He
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Cuibai Chen
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Hui Liu
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
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8
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Insoluble carbonaceous materials as electron shuttles enhance the anaerobic/anoxic bioremediation of redox pollutants: Recent advances. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2021.06.064] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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9
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Girones L, Oliva AL, Negrin VL, Marcovecchio JE, Arias AH. Persistent organic pollutants (POPs) in coastal wetlands: A review of their occurrences, toxic effects, and biogeochemical cycling. MARINE POLLUTION BULLETIN 2021; 172:112864. [PMID: 34482253 DOI: 10.1016/j.marpolbul.2021.112864] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 08/10/2021] [Accepted: 08/12/2021] [Indexed: 06/13/2023]
Abstract
Coastal wetlands, such as mangroves, seagrass beds, and salt marshes, are highly threatened by increasing anthropic pressures, including chemical pollution. Persistent organic pollutants (POPs) have attracted attention in these particularly vulnerable ecosystems, due to their bioaccumulative, pervasive, and ecotoxic behavior. This article reviews and summarizes available information regarding current levels, biogeochemical cycling, and effects of POPs on coastal wetlands. Sediment POP levels were compared with international quality guidelines, revealing many areas where compounds could cause damage to biota. Despite this, toxicological studies on some coastal wetland plants and microorganisms showed a high tolerance to those levels. These taxonomic groups are likely to play a key role in the cycling of the POPs, with an active role in their accumulation, immobilization, and degradation. Toxicity and biogeochemical processes varied markedly along three main axes; namely species, environmental conditions, and type of pollutant. While more focused research on newly and unintentionally produced POPs is needed, mainly in salt marshes and seagrass beds, with the information available so far, the environmental behavior, spatial distribution, and toxicity level of the studied POPs showed similar patterns across the three studied ecosystems.
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Affiliation(s)
- Lautaro Girones
- Instituto Argentino de Oceanografía (IADO - CONICET/UNS), Camino La Carrindanga km 7.5, 8000 Bahía Blanca, Argentina.
| | - Ana L Oliva
- Instituto Argentino de Oceanografía (IADO - CONICET/UNS), Camino La Carrindanga km 7.5, 8000 Bahía Blanca, Argentina
| | - Vanesa L Negrin
- Instituto Argentino de Oceanografía (IADO - CONICET/UNS), Camino La Carrindanga km 7.5, 8000 Bahía Blanca, Argentina; Departamento de Biología, Bioquímica y Farmacia, Universidad Nacional del Sur, Bahía Blanca, Argentina
| | - Jorge E Marcovecchio
- Instituto Argentino de Oceanografía (IADO - CONICET/UNS), Camino La Carrindanga km 7.5, 8000 Bahía Blanca, Argentina; Universidad Tecnológica Nacional (UTN)-FRBB, Bahía Blanca, Argentina; Universidad FASTA, Mar del Plata, Argentina
| | - Andrés H Arias
- Instituto Argentino de Oceanografía (IADO - CONICET/UNS), Camino La Carrindanga km 7.5, 8000 Bahía Blanca, Argentina; Departamento de Química, Universidad Nacional del Sur, Bahía Blanca, Argentina
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10
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Yuan J, Li S, Cheng J, Guo C, Shen C, He J, Yang Y, Hu P, Xu J, He Y. Potential Role of Methanogens in Microbial Reductive Dechlorination of Organic Chlorinated Pollutants In Situ. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:5917-5928. [PMID: 33856788 DOI: 10.1021/acs.est.0c08631] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Previous studies often attribute microbial reductive dechlorination to organohalide-respiring bacteria (OHRB) or cometabolic dechlorination bacteria (CORB). Even though methanogenesis frequently occurs during dechlorination of organic chlorinated pollutants (OCPs) in situ, the underestimated effect of methanogens and their interactions with dechlorinators remains unknown. We investigated the association between dechlorination and methanogenesis, as well as the performance of methanogens involved in reductive dechlorination, through the use of meta-analysis, incubation experiment, untargeted metabolomic analysis, and thermodynamic modeling approaches. The meta-analysis indicated that methanogenesis is largely synchronously associated with OCP dechlorination, that OHRB are not the sole degradation engineers that maintain OCP bioremediation, and that methanogens are fundamentally needed to sustain microenvironment functional balance. Laboratory results further confirmed that Methanosarcina barkeri (M. barkeri) promotes the dechlorination of γ-hexachlorocyclohexane (γ-HCH). Untargeted metabolomic analysis revealed that the application of γ-HCH upregulated the metabolic functioning of chlorocyclohexane and chlorobenzene degradation in M. barkeri, further confirming that M. barkeri potentially possesses an auxiliary dechlorination function. Finally, quantum analysis based on density functional theory (DFT) indicated that the methanogenic coenzyme F430 significantly reduces the activation barrier to dechlorination. Collectively, this work suggests that methanogens are highly involved in microbial reductive dechlorination at OCP-contaminated sites and may even directly favor OCP degradation.
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Affiliation(s)
- Jing Yuan
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Shuyao Li
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jie Cheng
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Chenxi Guo
- School of Chemistry and Chemical Engineering, The Queen's University of Belfast, Belfast BT9 5AG, United Kingdom
| | - Chaofeng Shen
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jianzhong He
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576, Singapore
| | - Yi Yang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, Liaoning, China
| | - Peijun Hu
- School of Chemistry and Chemical Engineering, The Queen's University of Belfast, Belfast BT9 5AG, United Kingdom
| | - Jianming Xu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Yan He
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
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11
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Alkylphenols and Chlorophenols Remediation in Vertical Flow Constructed Wetlands: Removal Efficiency and Microbial Community Response. WATER 2021. [DOI: 10.3390/w13050715] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
This study aims to investigate the effect of two different groups of phenolic compounds (the alkylphenols nonylphenol (NP) and octylphenol (OP), and the chlorophenol pentachlorophenol (PCP)) on constructed wetlands (CWs) performance, including on organic matter, nutrients and contaminants removal efficiency, and on microbial community structure in the plant bed substrate. CWs were assembled at lab scale simulating a vertical flow configuration and irrigated along eight weeks with Ribeira de Joane (an urban stream) water not doped (control) or doped with a mixture of NP and OP or with PCP (at a 100 μg·L−1 concentration each). The presence of the phenolic contaminants did not interfere in the removal of organic matter or nutrients in CWs in the long term. Removals of NP and OP were >99%, whereas PCP removals varied between 87% and 98%, mainly due to biodegradation. Microbial richness, diversity and dominance in CWs substrate were generally not affected by phenolic compounds, with only PCP decreasing diversity. Microbial community structure, however, showed that there was an adaptation of the microbial community to the presence of each contaminant, with several specialist genera being enriched following exposure. The three more abundant specialist genera were Methylotenera and Methylophilus (methylophilaceae family) and Hyphomicrobium (hyphomicrobiaceae family) when the systems were exposed to a mixture of NP and OP. When exposed to PCP, the three more abundant genera were Denitromonas (Rhodocyclaceae family), Xenococcus_PCC_7305 (Xenococcaceae family) and Rhodocyclaceae_uncultured (Rhodocyclaceae family). To increase CWs efficiency in the elimination of phenolic compounds, namely PCP which was not totally removed, strategies to stimulate (namely biostimulation) or increase (namely bioaugmentation) the presence of these bacteria should be explore. This study clearly shows the potential of vertical flow CWs for the removal of phenolic compounds, a still little explored subject, contributing to promote the use of CWs as nature-based solutions to remediate water contaminated with different families of persistent and/or emergent contaminants.
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12
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Chen Z, Tang X, Qiao W, Puentes Jácome LA, Edwards EA, He Y, Xu J. Nanoscale zero-valent iron reduction coupled with anaerobic dechlorination to degrade hexachlorocyclohexane isomers in historically contaminated soil. JOURNAL OF HAZARDOUS MATERIALS 2020; 400:123298. [PMID: 32947703 DOI: 10.1016/j.jhazmat.2020.123298] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 06/21/2020] [Accepted: 06/22/2020] [Indexed: 06/11/2023]
Abstract
Hexachlorocyclohexane (HCH) isomers pose potential threats to the environment and to public health due to their persistence and high toxicity. In this study, nanoscale zero-valent iron (nZVI) coupled with microbial degradation by indigenous microorganisms with and without biostimulation was employed to remediate soils highly polluted with HCH. The degradation efficiency of total HCHs in both the "nZVI-only" and "Non-amendment" treatments was approximately 50 %, while in the treatment amended with nZVI and acetate, 85 % of total HCHs was removed. Addition of nZVI and acetate resulted in enrichment of anaerobic microorganisms. The results of quantitative PCR (qPCR) and 16S rRNA gene amplicon sequencing revealed that Desulfotomaculum, Dehalobacter, Geobacter, and Desulfuromonas likely contributed to the depletion of HCH isomers. Moreover, some abiotic factors also favored this removal process, including pH, and the generation of iron sulfides as revealed by the result of Mössbauer spectrometer analysis. Our research provides an improved remediation strategy for soils polluted with HCH isomers and an understanding of the synergistic effect of nZVI and indigenous microorganisms.
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Affiliation(s)
- Zhengzheng Chen
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xianjin Tang
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Wenjing Qiao
- Department of Microbiology, Key Lab of Microbiology for Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Luz A Puentes Jácome
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario M5S 3E5, Canada
| | - Elizabeth A Edwards
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Ontario M5S 3E5, Canada
| | - Yan He
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
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13
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Jin D, Zhang F, Shi Y, Kong X, Xie Y, Du X, Li Y, Zhang R. Diversity of bacteria and archaea in the groundwater contaminated by chlorinated solvents undergoing natural attenuation. ENVIRONMENTAL RESEARCH 2020; 185:109457. [PMID: 32247910 DOI: 10.1016/j.envres.2020.109457] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 03/27/2020] [Accepted: 03/27/2020] [Indexed: 06/11/2023]
Abstract
Chlorinated solvents (CS)-contaminated groundwater poses serious risks to the environment and public health. Microorganisms play a vital role in efficient remediation of CS. In this study, the microbial community (bacterial and archaeal) composition of three CS-contaminated groundwater wells located at an abandoned chemical factory which covers three orders of magnitude in concentration (0.02-16.15 mg/L) were investigated via 16S rRNA gene high-throughput sequencing. The results indicated that Proteobacteria and Thaumarchaeota were the most abundant bacterial and archaeal groups at the phylum level in groundwater, respectively. The major bacterial genera (Flavobacterium sp., Mycobacterium sp. and unclassified Parcubacteria taxa, etc.) and archaeal genera (Thaumarchaeota Group C3, Miscellaneous Crenarchaeotic Group and Miscellaneous Euryarchaeotic Group, etc.) might be involved in the dechlorination processes. In addition, Pearson's correlation analyses showed that alpha diversity of the bacterial community was not significantly correlated with CS concentration, while alpha diversity of archaeal community greatly decreased with the increased contamination of CS. Moreover, partial Mantel test indicated that oxidation-reduction potential, dissolved oxygen, temperature and methane concentration were major drivers of bacterial and archaeal community composition, whereas CS concentration had no significant impact, indicating that both indigenous bacterial and archaeal community compositions are capable of withstanding elevated CS contamination. This study improves our understanding of how the natural microbial community responds to high CS-contaminated groundwater.
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Affiliation(s)
- Decai Jin
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fengsong Zhang
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China.
| | - Yi Shi
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - Xiao Kong
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yunfeng Xie
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China.
| | - Xiaoming Du
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, China
| | - Yanxia Li
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, China
| | - Ruiyong Zhang
- Federal Institute for Geosciences and Natural Resources (BGR), Hannover, 30655, Germany
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14
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Wang S, Zhang B, Li T, Li Z, Fu J. Soil vanadium(V)-reducing related bacteria drive community response to vanadium pollution from a smelting plant over multiple gradients. ENVIRONMENT INTERNATIONAL 2020; 138:105630. [PMID: 32163768 DOI: 10.1016/j.envint.2020.105630] [Citation(s) in RCA: 75] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 02/25/2020] [Accepted: 03/01/2020] [Indexed: 05/13/2023]
Abstract
The mining and smelting of navajoite has resulted in a serious vanadium pollution in regional geological environments and significant influence on soil microorganisms. However, the core microbiome responsible for adjusting community response to vanadium pollution and the driving pattern have been kept unclear. In this study, a suite of surface and profile soil samples over multiple gradients were collected in four directions and distances of 10-2000 m from a vanadium smelting plant in Panzhihua, China. The indigenous microbial communities and vanadium(V)-reducing related bacteria (VRB) were profiled by 16S rRNA gene high-throughput sequencing technique. Five VRB were detected in the original collected soil samples including Bacillus, Geobacter, Clostridium, Pseudomonas and Comamonadaceae based on high-throughput sequencing data analysis, and their abundances were significantly related with the content of vanadium. Low vanadium concentration promoted the growth of VRB, while high vanadium concentration would inhibit VRB multiplication. The Gaussian equation could be used to quantitatively describe the nonlinear relationship between VRB and vanadium. Network analysis demonstrated that the microbial communities were significantly influenced by VRB assemblage, and 1.32-52.77% of microbes in the community showed a close association with VRB. A laboratory incubation experiment also confirmed the core role of VRB to drive community response to vanadium pressure.
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Affiliation(s)
- Song Wang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China; Department of Environmental Engineering, Technical University of Denmark, DK-2800 Lyngby, Denmark
| | - Baogang Zhang
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China.
| | - Tingting Li
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Zongyan Li
- School of Water Resources and Environment, MOE Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing 100083, PR China
| | - Jie Fu
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200438, PR China; School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, PR China.
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15
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Xu Y, Liu J, Cai W, Feng J, Lu Z, Wang H, Franks AE, Tang C, He Y, Xu J. Dynamic processes in conjunction with microbial response to disclose the biochar effect on pentachlorophenol degradation under both aerobic and anaerobic conditions. JOURNAL OF HAZARDOUS MATERIALS 2020; 384:121503. [PMID: 31708286 DOI: 10.1016/j.jhazmat.2019.121503] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2019] [Revised: 10/05/2019] [Accepted: 10/18/2019] [Indexed: 06/10/2023]
Abstract
Organochlorines are critical soil contaminants and the use of biochar has recently shown potential to improve soil remediation. However, little is known about biochar-microbe interactions nor the impact on environmental processes such as the immobilization and biodegradation of organochlorine compounds. In this study, we performed microcosm experiments to elucidate how biochar affected the biodegradation and sequestration of pentachlorophenol (PCP). Our results showed that the amendment of biochar markedly inhibited PCP biodegradation due to a strong sorption affinity for PCP under both aerobic and anaerobic conditions. Notably, the inhibitory effect was relatively weaker under anaerobic conditions than under aerobic conditions. The addition of biochar can dramatically shift the bacterial community diversity in the PCP-spiked soils. Under aerobic conditions, biochar significantly stimulated the growth of PCP-degrading bacteria Bacillus and Sphingomonas, but reduced the opportunities for microbes to contact with PCP directly. Under anaerobic conditions, the non-strict organohalide-respiring bacteria Desulfovibrio, Anaeromyxobacter, Geobacter and Desulfomonile were the main drivers of PCP transformation. Our results imply that the use of biochar as a soil remediation strategy for organochlorine compounds should be cautious.
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Affiliation(s)
- Yan Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Jiaqi Liu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Wenshan Cai
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Jiayin Feng
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Zhijiang Lu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Haizhen Wang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
| | - Ashley E Franks
- Department of Physiology, Anatomy and Microbiology, School of Life Sciences, La Trobe University, Victoria, 3086, Australia; Centre for Future Landscapes, La Trobe University, Victoria 3086, Australia
| | - Caixian Tang
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Victoria, 3086, Australia
| | - Yan He
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China.
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou 310058, China
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16
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Song J, Zhao Q, Guo J, Yan N, Chen H, Sheng F, Lin Y, An D. The microbial community responsible for dechlorination and benzene ring opening during anaerobic degradation of 2,4,6‑trichlorophenol. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 651:1368-1376. [PMID: 30360268 DOI: 10.1016/j.scitotenv.2018.09.300] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2018] [Revised: 09/22/2018] [Accepted: 09/22/2018] [Indexed: 06/08/2023]
Abstract
This study describes the dechlorination ability of acclimated biomass, the high-throughput sequencing of the 16S ribosomal RNA (rRNA) gene of such microorganisms, and the analysis of their community structure in relation to special functions. Two types of acclimated biomass (AB-1 and AB-2) were obtained via different acclimated treatment processes and were used to degrade 2,4,6‑trichlorophenol. The degradation pathway and characteristics of trichlorophenol degradation were different between the two groups. AB-1 degraded trichlorophenol only to 4-chlorophenol. AB-2 completely dechlorinated trichlorophenol and opened the benzene ring. The 16S rRNA high-throughput sequencing method was employed to examine the microbial diversity. It was found that the microbial richness and diversity of AB-1 were higher than those of AB-2. Firmicutes and Bacteroidetes were 2.7-fold and 4.3-fold more abundant, respectively, in AB-1 than in AB-2. Dechlorination bacteria in AB-1 mainly included Desulfobulbus, Desulfovibrio, Dechloromonas, and Geobacter. The above-mentioned bacteria were less abundant in AB-2, but the abundance of Desulfomicrobium was twofold higher in AB-2 than in AB-1. The two types of acclimated biomass contained different hydrogen (H2)-producing bacteria. AB-2 showed higher abundance and diversity of hydrogen-producing bacteria. There was no Ignavibacteriae in AB-1, whereas its abundance in AB-2 was 8.4%. In this biomass, Ignavibacteriae was responsible for opening of the benzene ring. This study indicates that the abundance and diversity of microorganisms are not necessarily beneficial to the formation of a functional dechlorinating community. The H2-producing bacteria (which showed greater abundance and diversity) and Ignavibacterium were assumed to be core functional populations that gave AB-2 stronger dechlorination and phenol-degradation abilities. Control of lower oxidation reduction potential (Eh) and higher temperatures by means of fresh aerobic activated sludge as the starting microbial group, caused rapid complete dechlorination of 2,4,6‑trichlorophenol and benzene ring opening.
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Affiliation(s)
- Jiaxiu Song
- College of Life and Environmental Science, Shanghai Normal University, 100 Guilin Road, Shanghai 200234, PR China
| | - Qi Zhao
- College of Life and Environmental Science, Shanghai Normal University, 100 Guilin Road, Shanghai 200234, PR China
| | - Jun Guo
- College of Life and Environmental Science, Shanghai Normal University, 100 Guilin Road, Shanghai 200234, PR China
| | - Ning Yan
- College of Life and Environmental Science, Shanghai Normal University, 100 Guilin Road, Shanghai 200234, PR China
| | - Huidong Chen
- College of Life and Environmental Science, Shanghai Normal University, 100 Guilin Road, Shanghai 200234, PR China
| | - Fanfan Sheng
- School of Marxism, Tongji University, 1239 Siping road, Shanghai 200092, PR China
| | - Yujin Lin
- Department of Environmental Science & Engineering, Fudan University, 2205 Songhu Road, Shanghai 200438, PR China
| | - Dong An
- Department of Environmental Science & Engineering, Fudan University, 2205 Songhu Road, Shanghai 200438, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China.
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17
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Cheng J, Xue L, Zhu M, Feng J, Shen-Tu J, Xu J, Brookes PC, Tang C, He Y. Nitrate supply and sulfate-reducing suppression facilitate the removal of pentachlorophenol in a flooded mangrove soil. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 244:792-800. [PMID: 30390452 DOI: 10.1016/j.envpol.2018.09.143] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 09/05/2018] [Accepted: 09/28/2018] [Indexed: 06/08/2023]
Abstract
An anaerobic incubation was launched with varying nitrate (1, 5, 10 and 20 mM exogenous NaNO3) and molybdate (20 mM Na2MoO4, a sulfate-reducing inhibitor) additions to investigate the characteristics of PCP dechlorination, as well as the reduction of natural co-occurring electron acceptors, including NO3-, Fe(III) and SO42-, and the responses of microbial community structures under a unique reductive mangrove soil. Regardless of exogenous addition, nitrate was rapidly eliminated in the first 12 days. The reduction process of Fe(III) was inhibited, while that of SO42- reduction depended on addition concentration as compared to the control. PCP was mainly degraded from orth-position, forming the only intermediate 2,3,4,5-TeCP by anaerobic microbes, with the highest PCP removal rate of average 21.9% achieved in 1 and 5 mM NaNO3 as well as 20 mM Na2MoO4 treatments and the lowest of 7.5% in 20 mM NaNO3 treatment. The effects of nitrate on PCP dechlorination depended on addition concentration, while molybdate promoted PCP attenuation significantly. Analyses of the Illumina sequencing data and the relative abundance of dominant microorganisms indicated that the core functional groups regulated PCP removal at genera level likely included Bacillus, Pesudomonas, Dethiobacter, Desulfoporosinus and Desulfovbrio in the nitrate treatments; while that was likely Sedimentibacter and Geosporobacter_Thermotalea in the molybdate treatment. Nitrate supplement but not over supplement, or addition of molybdate are suggested as alternative strategies for better remediation in the nitrate-deficient and sulfur-accumulated soil ecosystem contaminated by PCP, through regulating the growth of core functional groups and thereby coordinating the interaction between dechlorination and its coupled soil redox processes due to shifts of more available electrons to dechlorination. Our results broadened the knowledge regarding microbial PCP degradation and their interactions with natural soil redox processes under anaerobic soil ecosystems.
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Affiliation(s)
- Jie Cheng
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Lili Xue
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Min Zhu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Jiayin Feng
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Jue Shen-Tu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Philip C Brookes
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China
| | - Caixian Tang
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Department of Agricultural Sciences, La Trobe University, Bundoora, Melbourne, Vic, 3086, Australia
| | - Yan He
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China; Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Hangzhou, 310058, China.
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18
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Du P, Wu X, Xu J, Dong F, Liu X, Zhang Y, Zheng Y. Clomazone influence soil microbial community and soil nitrogen cycling. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 644:475-485. [PMID: 29990898 DOI: 10.1016/j.scitotenv.2018.06.214] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 06/17/2018] [Accepted: 06/17/2018] [Indexed: 06/08/2023]
Abstract
We designed an indoor mesocosm experiment to investigate the long-term effects of exposure to clomazone, a widely used herbicide, on soil microbial communities and their nitrogen (N) cycling functions. Clomazone was applied to two typical soils from China at three concentrations: 0.8 (the recommended dosage), 8 and 80 mg kg-1 soil dry weight, and the mix was incubated for 90 days. Samples were removed periodically for assay with several techniques. The half-lives of clomazone in this experiment were 11-126 d. Results were significant only for the highest clomazone concentration. Next-generation sequencing of the 16S and 18S rDNA genes revealed that bacterial diversity significantly decreased whereas fungal abundance increased after day 60 but with no detectable effect on the microbial community. Hierarchical cluster and principal coordinates analysis revealed that the bacterial community structure was negatively impacted. Linear discriminant analysis of effect size identified Sphingomonas and Arthrobacter as the predominant bacterial species. Finally, we measured soil NH4+ and NO3- concentrations and used real-time PCR to analyze the abundance of the N-cycling genes, nifH and amoA. In the first 30 days, the NO3--N content and the number of ammonia-oxidizing bacteria increased. N2-fixing bacteria were inhibited after 60 days, but the NH4+-N concentration remained unchanged and was likely provided by ammoniation.
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Affiliation(s)
- Pengqiang Du
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; College of Chemistry, Central China Normal University, No. 152 Luoyu Road, Wuhan 430079, China
| | - Xiaohu Wu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; Key Laboratory of Control of Biological Hazard Factors (Plant Origin) for Agri-product Quality and Safety, Ministry of Agriculture and Rural Affairs of the People's Republic of China, China.
| | - Jun Xu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China; Key Laboratory of Control of Biological Hazard Factors (Plant Origin) for Agri-product Quality and Safety, Ministry of Agriculture and Rural Affairs of the People's Republic of China, China
| | - Fengshou Dong
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
| | - Xingang Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
| | - Ying Zhang
- Institute of Plant Protection, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China
| | - Yongquan Zheng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, No. 2 Yuanmingyuan West Road, Beijing 100193, China
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19
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Marcos MS, Barboza AD, Keijzer RM, Laanbroek HJ. Tide as Steering Factor in Structuring Archaeal and Bacterial Ammonia-Oxidizing Communities in Mangrove Forest Soils Dominated by Avicennia germinans and Rhizophora mangle. MICROBIAL ECOLOGY 2018; 75:997-1008. [PMID: 29063148 PMCID: PMC5906487 DOI: 10.1007/s00248-017-1091-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Accepted: 10/07/2017] [Indexed: 05/13/2023]
Abstract
Mangrove species are adapted to grow at specific zones in a tidal gradient. Here we tested the hypothesis that the archaeal and bacterial ammonia-oxidizing microbial communities differ in soils dominated by the mangrove species Avicennia germinans and Rhizophora mangle. Two of the sampling locations were tidal locations, while the other location was impounded. Differences in the community compositions of ammonia-oxidizing archaea (AOA) and bacteria (AOB) were analyzed by denaturing gradient gel electrophoresis (DGGE) of amoA genes and by MiSeq 16S rRNA gene-sequencing. The abundances of AOA and AOB were established by quantitative PCR of amoA genes. In addition, we analyzed the total microbial community composition based on 16S rRNA genes and explored the influence of soil physicochemical properties underneath Avicennia germinans and Rhizophora mangle on microbial communities. AOA were always more abundant than AOB, but the effect of mangrove species on total numbers of ammonia oxidizers was location-specific. The microbial communities including the ammonia oxidizers in soils associated with A. germinans and R. mangle differed only at the tidal locations. In conclusion, potential site-specific effects of mangrove species on soil microbial communities including those of the AOA and AOB are apparently overruled by the absence or presence of tide.
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Affiliation(s)
- Magalí S Marcos
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, the Netherlands
- Laboratorio de Microbiología y Biotecnología, Instituto Patagónico para el Estudio de los Ecosistemas Continentales (IPEEC, CONICET), Puerto Madryn, Argentina
| | - Anthony D Barboza
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, the Netherlands
- Centro Interdisciplinar de Pesquisas em Biotecnologia - CIP-Biotec, Universidade Federal do Pampa, Campus São Gabriel, São Gabriel, Brazil
| | - Rosalinde M Keijzer
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, the Netherlands
| | - Hendrikus J Laanbroek
- Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB, Wageningen, the Netherlands.
- Ecology and Biodiversity Group, Department of Biology, Utrecht University, Utrecht, the Netherlands.
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