Interplay of hydrology, community ecology and pollutant attenuation in the hyporheic zone

Combined effects of micropollutants and their degradation on prokaryotic communities at the sediment-water interface

Pesticides and pharmaceuticals enter aquatic ecosystems as complex mixtures. Various processes govern their dissipation and effect on the sediment and surface waters. These micropollutants often show persistence and can adversely affect microorganisms even at low concentrations. We investigated the dissipation and effects on procaryotic communities of metformin (antidiabetic drug), metolachlor (agricultural herbicide), and terbutryn (herbicide in building materials). These contaminants were introduced individually or as a mixture (17.6 µM per micropollutant) into laboratory microcosms mimicking the sediment-water interface. Metformin and metolachlor completely dissipated within 70 days, whereas terbutryn persisted. Dissipation did not differ whether the micropollutants were introduced individually or as part of a mixture. Sequence analysis of 16S rRNA gene amplicons evidenced distinct responses of prokaryotic communities in both sediment and water. Prokaryotic community variations were mainly driven by matrix composition and incubation time. Micropollutant exposure played a secondary but influential role, with pronounced effects of recalcitrant metolachlor and terbutryn within the micropollutant mixture. Antagonistic and synergistic non-additive effects were identified for specific taxa across taxonomic levels in response to the micropollutant mixture. This study underscores the importance of considering the diversity of interactions between micropollutants, prokaryotic communities, and their respective environments when examining sediment-water interfaces affected by multiple contaminants.

Using compound-specific isotope analysis to identify the mechanism of acetochlor degradation during oxygenation of hyporheic zone sediment

Biodegradation is recognized as the main pathway for acetochlor attenuation in aquatic environments. However, the potential abiotic degradation of acetochlor by hydroxyl radicals (•OH) generated during oxygenation of hyporheic zone sediments has not been investigated. This study aims to examine the production of •OH during oxygenation of hyporheic zone sediments and its effects on acetochlor attenuation. A significant decrease of acetochlor, ranging from 77.9% to 100%, was observed in the water-sediment systems with extensive •OH production. The primary sources of •OH production were found to be the oxidation of Fe(II) and reduced humic acids. Furthermore, a •OH quenching experiment suggests that •OH driven oxidation is the dominant pathway for acetochlor attenuation. Carbon isotope fractionation of acetochlor degradation during oxygenation of sediments (εbulk,C ranged from -1.5‰ to -0.5 ± 0.3‰) was close to that during acetochlor degradation by •OH in a H2O2-Fe3O4 Fenton system (εbulk,C = -0.5 ± 0.1‰), but significantly smaller than that during acetochlor biodegradation (εbulk,C = -5.8 ± 0.9‰). Compound-specific isotope analysis (CSIA) further suggests that •OH produced by sediment oxygenation plays a critical role in acetochlor attenuation in aquatic environments. Results of calculated apparent kinetic isotope effect of carbon (AKIEC) and transformation products indicate that SN1 and SN2-type nucleophilic substitution are the first steps in acetochlor attenuation through •OH driven oxidation (AKIEC = 1.007 ± 0.001) and aerobic biodegradation (AKIEC = 1.088 ± 0.013), respectively. Our findings highlight the potential of CSIA to assess the acetochlor degradation in water-sediment system, which can help to elucidate the fate of herbicide in aquatic environments.

Hydrolysis of sulfamethoxazole in the hyporheic zone: kinetics, factors and pathways

ABSTRACTIt is unknown how antibiotics would behave after entering the hyporheic zone (HZ), which is an area where groundwater and surface water alternate continuously. In this study, the hydrolysis process in the HZ was investigated based on the intermediates identified by HPLC-Q-TOF-MS and FTIR, and the active sites of sulfamethoxazole (SMX) were predicted by density functional theory (DFT). The results showed that the hydrolysis rate of SMX during surface water recharged groundwater reached 38.94%, and the contribution rate of hydroxyl radicals reached 48.35%. In neutral and alkaline environments, SMX hydrolysed more quickly. This is due to the fact that ·OH, as the main precursor of OH-, is much higher in quantity under alkaline conditions. Inorganic anions such as NO3-, HCO3- and CO 3 2 - may inhibit the hydrolysis of SMX by eliminating the reactive oxygen species generated in the HZ. In the process of groundwater recharging to surface water, the concentration of dissolved oxygen (DO) and the rate of SMX hydrolysis gradually reduced. Nitrification, hydroxylation and polymerisation are the main hydrolysis pathways of SMX. The hydrolysis products of SMX in the HZ are more plentiful and have a higher hydrolysis rate compared to the single oxygen environment. The study on the hydrolysis mechanism of SMX in this paper will provide a theoretical basis for the treatment of antibiotic pollution.

Geochemical processes of phosphorus‑iron on sediment-water interface during discharge of groundwater to freshwater lakes: Kinetic and mechanistic insights

Groundwater is widely recognized as a source of lake materials. When it discharges into lakes, phosphorus(P)‑iron(Fe) geochemical reactions occur due to environmental changes, affecting P discharge from groundwater. However, redox kinetics of Fe and associated P geochemical processes at the sediment-water interface are not fully understood. Taking Dongting Lake as an example, this study explored Fe and P geochemical processes at the sediment-water interface under groundwater discharge with high Fe and P concentrations. We incubated sediments from Dongting Lake under anoxic-oxic conditions with different initial aqueous P/Fe ratios and pH. Aqueous PO43--P and Fe2+, and solid P and Fe phases in sediments were analyzed, and experimental data were further simulated using numerical reactive models. At the beginning of the experiment, aqueous P and Fe were adsorbed rapidly on sediments. Under anoxic conditions, the Fe reduction rate decreased with decreasing content of poorly crystalline ferric (oxyhydr)oxides, and the addition of aqueous P and Fe at neutral pH enhanced the reduction rate. The increased aqueous P was dominated by desorption caused by sediment Fe reduction and then fixed by gibbsite adsorption and hydroxyapatite precipitation. Under oxic conditions, Fe(II) oxidation under was pH- and (P:Fe)ini-independent, with a sharp rate decline. Furthermore, the final sediment Fe(II) content was higher than the initial content, indicating the formation of a low-oxidizability Fe(II) phase. The P dynamics were dominated by adsorption on the produced Fe-oxides. The numerical models also suggested that heterogeneity in natural sediments promotes hydroxyapatite formation at low pH, but restricts it at high pH. The findings reveal that although aqueous P concentration decreased during groundwater discharge to lakes, PO43--P concentration remained much higher than that in natural lake water, increasing the risk of lake eutrophication. The paper provides references for further understanding of P loading from groundwater discharge into lakes.

Nitrogen removal in freshwater sediments of riparian zone: N-loss pathways and environmental controls

The riparian zone is an important location of nitrogen removal in the terrestrial and aquatic ecosystems. Many studies have focused on the nitrogen removal efficiency and one or two nitrogen removal processes in the riparian zone, and less attention has been paid to the interaction of different nitrogen transformation processes and the impact of in situ environmental conditions. The molecular biotechnology, microcosm culture experiments and 15N stable isotope tracing techniques were used in this research at the riparian zone in Weinan section of the Wei River, to reveal the nitrogen removal mechanism of riparian zone with multi-layer lithologic structure. The results showed that the nitrogen removal rate in the riparian zone was 4.14-35.19 μmol·N·kg-1·h-1. Denitrification, dissimilatory reduction to ammonium (DNRA) and anaerobic ammonium oxidation (anammox) jointly achieved the natural attenuation process of nitrogen in the riparian zone, and denitrification was the dominant process (accounting for 59.6%). High dissolved organic nitrogen and nitrate ratio (DOC:NO3-) would promote denitrification, but when the NO3- content was less than 0.06 mg/kg, DNRA would occur in preference to denitrification. Furthermore, the abundances of functional genes (norB, nirS, nrfA) and anammox bacterial 16S rRNA gene showed similar distribution patterns with the corresponding nitrogen transformation rates. Sedimentary NOX-, Fe(II), dissolved organic carbon (DOC) and the nitrogen transformation functional microbial abundance were the main factors affecting nitrogen removal in the riparian zone. Fe (II) promoted NO3- attenuation through nitrate dependent ferrous oxidation process under microbial mediation, and DOC promotes NO3- attenuation through enhancing DNRA effect. The results of this study can be used for the management of the riparian zone and the prevention and control of global nitrogen pollution.

Prediction models and major controlling factors of antibiotics bioavailability in hyporheic zone

Recently, antibiotics have been frequently detected in the hyporheic zone (HZ) as a novel contaminant. Bioavailability assessment has gradually attracted more attention in order to provide a more realistic assessment of human health risks. In this study, two typical antibiotics, oxytetracycline (OTC) and sulfamethoxazole (SMZ), were used as target pollutants in the HZ of the Zaohe-Weihe River, and the polar organics integrated sampler was used to analyze the variation of antibiotics bioavailability. According to the characteristics of the HZ, the total concentration of pollutants, pH, and dissolved oxygen (DO) were selected as major predictive factors to analyze their correlation with the antibiotics bioavailability. Then the predictive antibiotic bioavailability models were constructed by stepwise multiple linear regression method. The results showed that there was a highly significant negative correlation between OTC bioavailability and DO (P < 0.001), while SMZ bioavailability showed a highly significant negative correlation with total concentration of pollutants (P < 0.001) and a significant negative correlation with DO (P < 0.01). The results of correlation analysis were further verified by Principal Component Analysis. Based on the experimental data, we constructed eight prediction models for the bioavailability of two antibiotics and verified them. The data points of the six prediction models were distributed in the 95% prediction band, indicating that the models were more reliable and accurate. The prediction models in this study provide reference for the accurate ecological risk assessment of the bioavailability of pollutants in the HZ, and also provide a new idea for predicting the bioavailability of pollutants in practical applications.

Distribution and risk assessment of antibiotics under water level fluctuation in the riparian zone of the Hanjiang River

The riparian zone (RZ) is an important region connecting surface water and groundwater, and it has widely been acknowledged for its pollutant buffering capacity. However, the decontaminating effect of RZ on trace organic compounds such as antibiotics has received little attention. This study explored the distribution of 21 antibiotics and 4 sulfonamide metabolites in river water and groundwater in the lower reaches of the Hanjiang River. The diffusion and exchange of contaminants between the river and riverbanks under the influence of water conservancy projects (Xinglong Dam and the Yangtze-Hanjiang Water Diversion Project) were investigated. Macrolide antibiotics were prevalent in river water (62.5-100%) and groundwater samples (42.9-80.4%). Ofloxacin and chlortetracycline were detected with the highest concentrations in river water (12.2 ng L^-1) and groundwater (9.3 ng L^-1) respectively. Higher levels of antibiotics were observed in spring and winter than in other seasons. The river-groundwater interaction has a certain interception effect on antibiotics, especially near riverbanks. Redox sensitive element Fe²⁺ showed significantly positive correlations with some tetracycline and macrolide antibiotics (p < 0.05), and thus the migration mechanism between Fe²⁺ and antibiotics under the condition of redox change should be investigated further. Environmental risks posed by antibiotics were assessed for algae, daphnids, and fish in surface water and groundwater. Only clarithromycin and chlortetracycline presented a medium risk to algae (0.1 < RQ < 1), and the rest presented low risk (RQ < 0.1). Nevertheless, the risk range may be further extended by interactions between groundwater and surface water. Accurate understanding of antibiotic transport in RZ is critical for developing management strategies aimed at reducing the pollution load on the watershed.

Metal bioaccumulation in stygophilous amphipod Synurella ambulans in the hyporheic zone: The influence of environmental factors

Given the increasing need to protect vulnerable freshwater ecosystems and make them more resilient to human use and climate change, biomonitoring of the hyporheic zone (HZ), which plays a critical role in pollution attenuation, is essential. The aim of the present study was to assess the potential of the amphipod species Synurella ambulans as a bioindicator of metal contamination in the HZ of the Sava River (Croatia). Amphipods were collected during the four seasons at two sampling sites (average sampling depth 55 cm) differing in type (agricultural and urban) and intensity (diffuse and point source contamination) of anthropogenic influence, one located upstream (Medsave), and the other downstream (Jarun) of the wastewater treatment plant discharge. Concentrations of Al, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, Rb, Sn, Zn, Ca, K, Mg and Na were measured in the interstitial water, sediments and specimens of S. ambulans by HR ICP-MS. Physicochemical parameters (temperature, DO, O₂ saturation, pH, conductivity, alkalinity, total water hardness, COD_KMnO4, nutrients) were measured in the interstitial water, while organic carbon was measured in the interstitial water and sediments. Metal concentrations in interstitial water and sediments were below thresholds set by environmental quality standards. Metal concentrations in S. ambulans were classified as follows: higher at the Jarun site (Al, Cr, Fe, Ni, Pb, Sn), higher at the Medsave site (Cd, Cu, Rb) and mostly comparable at both sites (Co, Mn, Zn). Bioaccumulation factors were generally higher at Jarun, with average values ranging from 322 to 143,278 L kg^-1. Bioaccumulation of metals in S. ambulans depended on various environmental factors, with metal exposure level and dissolved macro elements showing the strongest association with metals accumulated in S. ambulans. The findings provided the first evidence on the suitability of S. ambulans as a good bioindicator of chronic metal contamination in the HZ.

Temporal dynamic of antibiotic resistance genes in the Zaohe-Weihe hyporheic zone: driven by oxygen and bacterial community

The widespread spread of antibiotic resistance genes (ARGs) in hyporheic zone (HZ) has become an emerging environmental problem due to their potentially harmful nature. In this research, three different oxygen treatment systems were set up to study the effects of oxygen changes on the abundance of ARGs in the HZ. In addition, the effects of temperature and salinity on ARGs were investigated under aerobic and anaerobic systems, respectively. The bacterial community composition of sediment samples and the relationship with ARGs were analyzed. The explanation ratio and causality of the driving factors affecting ARGs were analyzed using variation partitioning analysis (VPA) and structural equation model (SEM). The relative abundance of ARGs and mobile genetic elements (MGEs) in the anaerobic system increased significantly, which was higher than that in the aerobic system and the aerobic-anaerobic interaction system. The experiment of salinity and temperature also further proved this result. There were many bacterial communities that affected tetracycline and sulfonamide ARGs in sediments, and these host bacteria are mainly concentrated in Proteobacteria, Firmicutes and Bacteroidetes. VPA and SEM further revealed that the abundance of ARGs was mainly influenced by changes in bacterial communities and oxygen conditions, and horizontal gene transfer (HGT) of MGEs also had a positive effect on the spread of ARGs. Those findings suggest that complex oxygen conditions in the HZ alter bacterial communities and promote MGEs-mediated horizontal transfer, which together lead to the spread of ARGs. This study has value as a reference for formulating effective strategies to minimize the propagation of ARGs in underground environment.

Interactive influences of ecosystem services and socioeconomic factors on watershed eco-compensation standard "popularization" based on natural based solutions

Watershed eco-compensation is a policy tool to realize watershed environment improvement and regional economic development. It is important to eliminate the influence of economic differences between upstream & downstream regions and realize the fairness of regional social development based on Natural based Solutions (NbS). At present, lack of clarity in coupling and coordination analysis of ecosystem services & socioeconomic based on NbS could hamper watershed eco-compensation standards "popularization" and reduce the ability to successfully ecological governance. To meet the needs of economic development and ecological service value realization, dynamic equilibrium game research based on multidimensional relationship coordination and a multi-objective optimization solution of economic benefit distribution was carried out. To achieve the bargaining Bayesian/Nash equilibrium of the watershed eco-compensation standard in the game, the existence conditions of the equilibrium solution of the eco-compensation standard based on the mixed equilibrium game implementation process were studied. To carry out the complete information dynamic game, the equilibrium solution of the watershed eco-compensation standard based on the dynamic transfer payment was solved, and the rational analysis of the dynamic Bayesian equilibrium game of bargaining based on the incentive compatibility mechanism was also discussed. Water quantity and quality eco-compensation can ensure balanced development between ecological protection and the social economy in the Mihe River Basin. Combined with the variation law of socioeconomic water intake-utilization standards and the water use value, the city of Shouguang City & Qingzhou City should pay Linqu County 4.78 million US$ and 1.29 million US$ as watershed eco-compensation standards per year based on NbS, respectively. To verify the rationality of the results derived from the economically optimal model, two modes of "bargaining" & "perfect competition", were used to study the characteristics of the protocols generated by the equilibrium game, and the applicable conditions of the nonzero-sum game solution upstream and downstream of the watershed were also explored. Based on the nonzero-sum processing of the survey results, the current relationship between the input value of eco-compensation and the willingness to pay satisfies v ≥ c + 1 / 4 . Based on the dynamic game & Bayesian equilibrium solution of bargaining, the watershed eco-compensation quota of water quantity & quality is 6.07 million US$, the willingness to pay is 65.63 US$/month. These findings contribute to the quantifying process of bargaining & dynamic equilibrium by transforming "ambiguous" information to achieve sustainable ecosystem service management and develop socioeconomic strategies associated with different compensation features based on NbS, thus helping to inform watershed management.

Drivers of functional diversity in the hyporheic zone of a large river

The effects of regional (hydrogeology and geomorphology) and local (sediment and hydrology) characteristics on hyporheic assemblages were studied along a 40-km reach of a large gravel-bed river. Hyporheic water and fauna were sampled at the upstream and downstream positions of 15 large gravel bars. The resulting 30 stations varied in their sediment grain size, stability and direction of river-aquifer exchanges. The study concludes that at the 40-km (sector) scale, the longitudinal distribution of hyporheic fauna was controlled by 1) the hydrogeology of the valley (i.e. gaining vs loosing sectors) that modifies abundance and taxonomic richness of stygobites 2) current channel morphometry of the river (i.e. shape and location of meanders), and 3) historical changes (i.e. river incision) which modify abundance and richness of assemblages. At the local scale, we found that surface grain size and stability of the sediment evaluated by visual observation were poor predictors of hyporheos composition. In contrast, the local hydrology (i.e. downwellings, upwellings, low vertical exchanges) explained a large part of the abundance, taxonomic richness and composition of the hyporheic assemblages. Stations with low vertical exchanges were found poorly colonized, while the upwelling zones were rich in stygobites and downwelling areas harbor abundant and species-rich temporary hyporheos. It was also observed that functional diversity was controlled by the same parameters, with high relative abundances of stygobites in upwelling zones and POM feeders in downwelling zones. The heterogeneity of hydrological patterns, with alternation of upwellings and downwellings may represent the optimal spatial structure for hyporheic biodiversity conservation and resilience in rivers.

Intermediate Levels of Predation and Nutrient Enrichment Enhance the Activity of Ibuprofen-Degrading Bacteria

Water is the most indispensable natural resource; yet, organic pollution of freshwater sources is widespread. In recent years, there has been increasing concern over the vast array of emerging organic contaminants (EOCs) in the effluent of wastewater treatment plants (WWTPs). Several of these EOCs are degraded within the pore space of riverbeds by active microbial consortia. However, the mechanisms behind this ecosystem service are largely unknown. Here, we report how phosphate concentration and predator-prey interactions drive the capacity of bacteria to process a model EOC (ibuprofen). The presence of phosphate had a significant positive effect on the population growth rate of an ibuprofen-degrading strain. Thus, when phosphate was present, ibuprofen removal efficiency increased. Moreover, low and medium levels of predation, by a ciliated protozoan, stimulated bacterial population growth. This unimodal effect of predation was lost under high phosphate concentration, resulting in the flattening of the relationships between predator density and population growth of ibuprofen degraders. Our results suggest that moderate nutrient and predation levels promote the growth rate of bacterial degraders and, consequently, the self-purifying capability of the system. These findings enhance our understanding of the mechanisms by which riverbed communities drive the processing of EOCs.

Degradation potential of MCPA, metolachlor and propiconazole in the hyporheic sediments of an agriculturally impacted river

Hyporheic sediments are influenced by physical, biological, and chemical processes due to the interactions with river water and has been shown to play an important role in the environmental fate of pesticides. Therefore, this study evaluated the bacterial degradation potential of MCPA, metolachlor and propiconazole in hyporheic sediments sampled along a 20 km long stretch of an agriculturally impacted river dominated primarily by water losing conditions. Water physicochemical parameters in the river and nearby groundwater wells were assessed along with pesticide sorption to sediments and bacterial community composition. Degradation and mineralisation batch experiments were set up from six locations (five water losing, one water gaining) using environmentally relevant concentrations of pesticides (10 μg kg^-1). Highly variable DT₅₀ values from 11 to 44 days for MCPA, 11-27 days for metolachlor (MTC) and 60-147 days for propiconazole were calculated based on ~140 day studies. Degradation of MTC led to accumulation of the transformation products MOA and MESA in batch experiments. Noteworthy, MESA was detected in the groundwater wells adjacent to the part of the river impacted by losing conditions suggesting that degradation processes in hyporheic sediments may lead to the formation of transformation products (TP) leaching towards groundwater. Further, from propiconazole was identified a persistent transformation product being different from 1,2,4-triazole. Specific calculated DT₅₀ values could not the linked to bacterial diversity. However, generally all sediment samples were characterised by high bacterial diversity, where approximately 80% of the relative sequence abundances were < 1%, which may increase the likelihood of finding contaminant-degrading genes, thereby explaining the general high contaminant-degrading activity. The studied sediments revealed a high potential to degrade pesticides despite only being exposed to low diffuse pollutant concentrations that is similar to calculated DT₅₀ values in agricultural soils.

Streambed pollution: A comprehensive review of its sources, eco-hydro-geo-chemical impacts, assessment, and mitigation strategies

Streambeds are an integral part of the river ecosystem. They provide habitat to a vast array of aquatic and benthic organisms as well as facilitate the bio-degradation and transformation of organic matter and vital nutrients. Increasing anthropogenic influence introduces multiple stressors to the stream networks resulting in pollution of streambeds, which in turn, have detrimental effects on the overall stream ecosystem health. There is a huge gap in the current understanding of streambed pollution and its impacts, and the widely practiced streambed pollution mitigation strategies lack a holistic approach. In this comprehensive review, we first synthesize the state-of-the-art knowledge of conventional and emerging forms of contaminants, their overall impacts on stream ecosystem functions, and present future directions to comprehend the problem of streambed pollution. We highlight that fine sediments and plastics (found especially in urban streambeds) are among the major physical pollutants causing streambed pollution and the chemical pollutants generally comprise hydrophobic compounds including various legacy contaminants such as polychlorinated biphenyl (PCB), dichlorodiphenyltrichloroethane (DDT), a wide range of pesticides and a variety of heavy metals. Moreover, in recent years, highly polar and hydrophilic emerging contaminants such as micro-plastics, pharmaceutical waste and personal care products have been identified in riverbeds and streambeds across the world. We stress that the impacts of streambed pollution have been largely studied with discipline-driven perspectives amongst which the ecological impacts have received a lot of attention in the past. To present a comprehensive outlook, this review also synthesizes and discusses most of the understudied hydrological, geomorphological and biochemical impacts of different forms of streambed pollution. Subsequently, we also present a global inventory by compiling information from the published literature to highlight the status of streambed pollution around the globe. In the end, we endorse the positive and negative aspects of the current impact assessment methodologies and also highlight various physical, chemical and biological remediation measures that could be undertaken to alleviate streambed pollution.

Insight into microbial degradation of hexabromocyclododecane (HBCD) in lake sediments under different hydrodynamic conditions

Hexabromocyclododecane (HBCD), an emerging persistent organic pollutant, has been widely detected in aquatic ecosystems with various hydrodynamic conditions, however, the effects of hydrodynamic changes on microbial degradation of HBCD in aquatic sediment remains unclear. Here, we conducted an annular flume experiment to characterize variation in HBCD removal from contaminated sediment under three hydrodynamic conditions with different flow velocities, as well as clarify the underlying microbial mechanisms. We detected significant HBCD removal and bromine ion generation in all contaminated sediments, and microbial reduction debromination was an important process for HBCD removal. At the end of the 49-day experiment, both HBCD removal percentage and the bromine ion concentration were significantly lower under dynamic water condition with higher sediment redox potential, compared with static water conditions. The dynamic water conditions resulted a relatively high sediment redox potential and decreased the iron reduction rate and the abundance of organohalide-respiring bacteria (OHRB) in the genera Geobatcer, Dehalogenimonas, Dehalobacter, and Dehalococcoide, which reduced the microbial degradation of HBCD in contaminated sediments. The community composition of both total bacteria and OHRB also differed significantly among hydrodynamic conditions. Some bacterial groups with HBCD degradation abilities such as Pseudomonas and Sulfuricurvum were less abundant under dynamic water conditions, and the HBCD degradation efficiencies were lower. These findings enhance our understanding of the bioremediation potential of HBCD-contaminated sediments in different hydrodynamic areas.

The biogeochemical responses of hyporheic groundwater to the long-run managed aquifer recharge: Linking microbial communities to hydrochemistry and micropollutants

Interactions of surface water and groundwater (SW-GW) in hyporheic zones produce biogeochemical hotspots. However, response patterns of hyporheic groundwater to external influences remain unclear. In this study, three datasets (hydrochemistry, antibiotics, and microbiome) were collected over a hydrological year to explore the influence of a 12-year managed aquifer recharge (MAR) project. We observed that the long-term MAR practice elevated nutrient and antibiotic levels while reduced redox potential in hyporheic groundwater, and these impacts depended on decreasing SW-GW interaction intensity with aquifer depth. In contrast, the long-term MAR practice increased community dissimilarity of 30-m groundwater but had little impact on 50-m or 80-m groundwater. Moreover, hyporheic community assembly was dominated by dispersal limitation, and thereby co-varied hydrochemistry and antibiotics only attributed to small community variability. The long-term MAR practice decreased species-interaction intensity and changed the abundance of metabolic functions in hyporheic groundwater. Furthermore, predicted community functions involving carbon, nitrogen, sulfur, and manganese cycles for 30-m groundwater showed higher abundances than those for 50- and 80-m groundwater. Collectively, we showed that hyporheic groundwater was sensitive to the SW-GW interaction and human activities, with the interactions of hydrochemistry, contaminants, and microbiome linking to hyporheic groundwater quality and ecosystem functioning.

Influence of the In-Stream Structure on Solute Transport in the Hyporheic Zone

The hyporheic zone (HZ) plays an important role in the river ecosystem, and hyporheic exchange and solute transport in the HZ are important ecological functions. However, the relationship between the design parameters of river structure and solute transport is still poorly understood. In this study, we combined flume experiments and numerical simulations to systematically evaluate how in-stream structures impact the solute transport depth (D_P), hyporheic vertical exchange flux (Q), and solute flux (Qs). The results showed that the in-stream structure had a significant influence on solute transport in the HZ and could obviously increase the intensity of hyporheic exchange and promote solute transport. Model results indicated that D_P, Q, and Qs increased with the ratio of ground height to underground height of structure (H/D) and structure number (N), while Q, D_P, and Qs increased with the structural spacing (S) to begin with; then, Q remained constant, and D_P and Qs decreased as S continued to increase. This study deepened our understanding of the influence of in-stream structural design parameters on HZ solute transport, which is helpful to provide a theoretical basis for ecological restoration projects in the river HZ.

Efficiency of the bank filtration technique for diclofenac removal: A review

Bank filtration (BF) has been employed for more than a century for the production of water with a better quality, and it has been showing satisfactory results in diclofenac attenuation. Considered the most administered analgesic in the world, diclofenac has been frequently detected in water bodies. Besides being persistent in the environment, this compound is not completely removed by the conventional water treatments, drinking water treatment plants (DWTPs) and wastewater treatment plant (WWTPs). BF has a high complexity, whose efficiency depends on the characteristics of the observed pollutant and on the environment where the system in installed, which is why this is a topic that has been constantly studied. Nevertheless, studies present the behavior of diclofenac during the BF process. In this context, this research performed the evaluation of the factors and the biogeochemical processes that influence the efficiency of the BF technique in diclofenac removal. The aerobic conditions, higher temperatures, microbial biomass density, hydrogen potential close to neutrality and sediments with heterogeneous fractions are considered the ideal conditions in the aquifer for diclofenac removal. Nonetheless, there is no consensus on which of these factors has the greatest contribution on the mechanism of attenuation during BF. Studies with columns in laboratory and modeling affirm that the highest degradation rates occur in the first centimeters (5-50 cm) of the passage of water through the porous medium, in the environment known as hyporheic zone, where intense biogeochemical activities occur. Research has shown 100% removal efficiency for diclofenac persistent to compounds not removed during the BF process. However, half of the studies had removal efficiency that ranged between 80 and 100%. Therefore, the performance of more in-depth studies on the degradation and mobility of this compound becomes necessary for a better understanding of the conditions and biogeochemical processes which act in its attenuation.

Predation increases multiple components of microbial diversity in activated sludge communities

Protozoan predators form an essential component of activated sludge communities that is tightly linked to wastewater treatment efficiency. Nonetheless, very little is known how protozoan predation is channelled via bacterial communities to affect ecosystem functioning. Therefore, we experimentally manipulated protozoan predation pressure in activated-sludge communities to determine its impacts on microbial diversity, composition and putative functionality. Different components of bacterial diversity such as taxa richness, evenness, genetic diversity and beta diversity all responded strongly and positively to high protozoan predation pressure. These responses were non-linear and levelled off at higher levels of predation pressure, supporting predictions of hump-shaped relationships between predation pressure and prey diversity. In contrast to predation intensity, the impact of predator diversity had both positive (taxa richness) and negative (evenness and phylogenetic distinctiveness) effects on bacterial diversity. Furthermore, predation shaped the structure of bacterial communities. Reduction in top-down control negatively affected the majority of taxa that are generally associated with increased treatment efficiency, compromising particularly the potential for nitrogen removal. Consequently, our findings highlight responses of bacterial diversity and community composition as two distinct mechanisms linking protozoan predation with ecosystem functioning in activated sludge communities.

Dynamics of microbiotic patterns reveal surface water groundwater interactions in intermittent and perennial streams

Exchange between groundwater (GW), hyporheic zone waters (HZ) and surface waters (SW) is critical for water quality, quantity, and the ecological health and functioning of all three ecosystems. Hydrological exchange is particularly important in intermittent creeks, such as in the Murray Darling Basin, Australia, where stream reaches shift from losing to gaining depending on the volume of surface flows. In this study we used hydrochemistry to identify SW-GW exchange and combined this with eDNA data to analyse the response of eukaryote and prokaryote communities to differing flow conditions within intermittent and perennial stream reaches. Our study suggested that SW and GW microbial communities were only around 30% similar. Differences in microbiota between SW, HZ and GW habitats were driven by changes in relative abundances of surface water dominant organisms (such as those capable of photosynthesis) as well as anaerobic taxa typical of GW environments (e.g., methanogens), with GW and HZ microbial communities becoming increasingly different to those in SW as flow ceased in intermittent creeks. Fine-scale hydrologic changes were identified through microbial communities in the perennial Maules Creek, indicating the importance of GW-SW exchange to biotic communities. This study highlights the importance of flow in shaping microbial communities and biogeochemical cycling within intermittent creeks and their connected alluvial aquifers. Our results suggest that microbiota may prove a useful indicator of SW-GW exchange, and in some circumstances, may be more sensitive in demonstrating fine-scale changes in SW-GW interactions than water chemistry. This knowledge furthers our understanding of GW-SW exchange and its impacts on ecological health.

Role of River–Lake System Sediments and Microbial Activity in the Hyporheic Zone

The effect of river–lake systems on the surface water self-purification process is a significant and not fully recognised scientific issue. The conditions prevailing in the hyporheic zone of these ecosystems are of great importance in the process of component exchange between water and sediments. The aim of this study was to investigate the influence of the type of sediments located at the bottom of the riverbed being part of a river–lake system on microbial activity in the hyporheic zone. An ex situ experiment was used to study the microbiological activity and the transformation of components in the collected river sediments. It was found that the specific properties of sediments varied depending on their location in the riverbed between the lakes comprising the system and that the prevailing meteorological conditions can also have an effect on microbial activity in the hyporheic zone, e.g., aerobic conditions. These conditions determined the intensity of component conversion in the sediments due to microbial metabolism. A closer understanding of the processes occurring in the hyporheic zone may allow the processes of water self-purification within river–lake systems to be supported in the future, which will contribute to the improvement of surface water quality.

Effects of chronic exposure of antibiotics on microbial community structure and functions in hyporheic zone sediments

Microbial communities in hyporheic zones (HZ) provide vital biogeochemical functions such as contaminant degradation for river ecosystems. Antibiotics are contaminants that have been increasingly detected in HZ sediments. In this study, sediments from different HZ locations in a contaminated river, Maozhou river, China were sampled and analyzed using qPCR and high-throughput sequencing to investigate the effect of antibiotic contamination on microbial community structures and functions in HZ sediments. Results indicated that types and concentrations of antibiotics in HZ sediments were heterogeneously distributed that were largely consistent with the distribution of antibiotic sources. Sediments near animal farm and hospital contained higher antibiotic concentrations compared with those from mainstream. The distribution of ARGs was well correlated with antibiotics. Bacterial indicator genera indicating differences between mainstream area and other sampling areas were positively correlated with antibiotics, suggesting the influences of antibiotics on reshaping microbial community structures. PICRUSt revealed positive relationships between antibiotics and predicted functional genes involved in defense, signal transduction, and recombination and repair. This imply the defensive response of microbial communities on antibiotic attack. These results indicated that antibiotic contamination in the watershed posed a potential risk on HZ microbial community structures and functions, which may further threaten river ecosystem functions.

Biodegradation of metoprolol in oxic and anoxic hyporheic zone sediments: unexpected effects on microbial communities

Abstract

Metoprolol is widely used as a beta-blocker and considered an emerging contaminant of environmental concern due to pseudo persistence in wastewater effluents that poses a potential ecotoxicological threat to aquatic ecosystems. Microbial removal of metoprolol in the redox-delineated hyporheic zone (HZ) was investigated using streambed sediments supplemented with 15 or 150 μM metoprolol in a laboratory microcosm incubation under oxic and anoxic conditions. Metoprolol disappeared from the aqueous phase under oxic and anoxic conditions within 65 and 72 days, respectively. Metoprolol was refed twice after initial depletion resulting in accelerated disappearance under both conditions. Metoprolol disappearance was marginal in sterile control microcosms with autoclaved sediment. Metoprolol was transformed mainly to metoprolol acid in oxic microcosms, while metoprolol acid and α-hydroxymetoprolol were formed in anoxic microcosms. Transformation products were transient and disappeared within 30 days under both conditions. Effects of metoprolol on the HZ bacterial community were evaluated using DNA- and RNA-based time-resolved amplicon Illumina MiSeq sequencing targeting the 16S rRNA gene and 16S rRNA, respectively, and were prominent on 16S rRNA rather than 16S rRNA gene level suggesting moderate metoprolol-induced activity-level changes. A positive impact of metoprolol on Sphingomonadaceae and Enterobacteriaceae under oxic and anoxic conditions, respectively, was observed. Nitrifiers were impaired by metoprolol under oxic and anoxic conditions. Collectively, our findings revealed high metoprolol biodegradation potentials in the hyporheic zone under contrasting redox conditions associated with changes in the active microbial communities, thus contributing to the attenuation of micropollutants.

Key points

• High biotic oxic and anoxic metoprolol degradation potentials in the hyporheic zone.

• Key metoprolol-associated taxa included Sphingomonadaceae, Enterobacteraceae, and Promicromonosporaceae.

• Negative impact of metoprolol on nitrifiers.

Supplementary Information

The online version contains supplementary material available at 10.1007/s00253-021-11466-w.

Transformation of organic micropollutants along hyporheic flow in bedforms of river-simulating flumes

Urban streams receive increasing loads of organic micropollutants from treated wastewaters. A comprehensive understanding of the in-stream fate of micropollutants is thus of high interest for water quality management. Bedforms induce pumping effects considerably contributing to whole stream hyporheic exchange and are hotspots of biogeochemical turnover processes. However, little is known about the transformation of micropollutants in such structures. In the present study, we set up recirculating flumes to examine the transformation of a set of micropollutants along single flowpaths in two triangular bedforms. We sampled porewater from four locations in the bedforms over 78 days and analysed the resulting concentration curves using the results of a hydrodynamic model in combination with a reactive transport model accounting for advection, dispersion, first-order removal and retardation. The four porewater sampling locations were positioned on individual flowpaths with median solute travel times ranging from 11.5 to 43.3 h as shown in a hydrodynamic model previously. Highest stability was estimated for hydrochlorothiazide on all flowpaths. Lowest detectable half-lives were estimated for sotalol (0.7 h) and sitagliptin (0.2 h) along the shortest flowpath. Also, venlafaxine, acesulfame, bezafibrate, irbesartan, valsartan, ibuprofen and naproxen displayed lower half-lives at shorter flowpaths in the first bedform. However, the behavior of many compounds in the second bedform deviated from expectations, where particularly transformation products, e.g. valsartan acid, showed high concentrations. Flowpath-specific behavior as observed for metformin or flume-specific behavior as observed for metoprolol acid, for instance, was attributed to potential small-scale or flume-scale heterogeneity of microbial community compositions, respectively. The results of the study indicate that the shallow hyporheic flow field and the small-scale heterogeneity of the microbial community are major controlling factors for the transformation of relevant micropollutants in river sediments.

The riverine bioreactor: An integrative perspective on biological decomposition of organic matter across riverine habitats

Riverine ecosystems can be conceptualized as 'bioreactors' (the riverine bioreactor) which retain and decompose a wide range of organic substrates. The metabolic performance of the riverine bioreactor is linked to their community structure, the efficiency of energy transfer along food chains, and complex interactions among biotic and abiotic environmental factors. However, our understanding of the mechanistic functioning and capacity of the riverine bioreactor remains limited. We review the state of knowledge and outline major gaps in the understanding of biotic drivers of organic matter decomposition processes that occur in riverine ecosystems, across habitats, temporal dimensions, and latitudes influenced by climate change. We propose a novel, integrative analytical perspective to assess and predict decomposition processes in riverine ecosystems. We then use this model to analyse data to demonstrate that the size-spectra of a community can be used to predict decomposition rates by analysing an illustrative dataset. This modelling methodology allows comparison of the riverine bioreactor's performance across habitats and at a global scale. Our integrative analytical approach can be applied to advance understanding of the functioning and efficiency of the riverine bioreactor as hotspots of metabolic activity. Application of insights gained from such analyses could inform the development of strategies that promote the functioning of the riverine bioreactor across global ecosystems.

Invertebrate Responses to Restoration across Benthic and Hyporheic Stream Compartments

River restoration is a multi-billion-dollar business, yet it is unclear whether benthic community health, which is routinely monitored, can be used as a proxy for the health of the hyporheos. Applying a Before-After-Control-Impact approach to a UK case study, we compared the effects of removing an impoundment on the hyporheos with effects on the benthos. We compared invertebrate biological traits that we expected to respond to the restoration. We constructed sample-size based diversity curves and determined β-diversity between compartments and reaches. Two years post-restoration, hyporheic taxon richness was significantly lower in the restored reach compared to the control. However, three years post-restoration taxon richness was significantly higher in the impact reach. The composition of the control and impact reach hyporheos was most dissimilar at the first sampling time point post-restoration and at this time there was a universal decrease in the relative abundance of burrowing organisms respiring through gills. We did not detect a signal of restoration on benthic assemblage diversity and composition, perhaps because reach-scale restorations can be overwhelmed by catchment-scale disturbances. Thus, the hyporheos and the benthos responded differently to restoration. Given the importance of the hyporheic zone in the provision of ecosystem function and services, it is clear that it should be included in future monitoring protocols that aim to assess river restoration success.

Simultaneous attenuation of trace organics and change in organic matter composition in the hyporheic zone of urban streams

Trace organic compounds (TrOCs) enter rivers with discharge of treated wastewater. These effluents can contain high loads of dissolved organic matter (DOM). In a 48 h field study, we investigated changes in molecular composition of seven DOM compound classes (FTICR-MS) and attenuation of 17 polar TrOCs in a small urban stream receiving treated wastewater. Correlations between TrOCs and DOM were used to identify simultaneous changes in surface water and the hyporheic zone. Changes in TrOC concentrations in surface water ranged between a decrease of 29.2% for methylbenzotriazole and an increase of 152.2% for the transformation product gabapentin-lactam. In the hyporheic zone, only decreasing TrOC concentrations were observed, ranging from 4.9% for primidone to 93.8% for venlafaxine . TrOC attenuation coincided with a decline of molecular diversity of easily biodegradable DOM compound classes while molecular diversity of poorly biodegradable DOM compound classes increased. This concurrence indicates similar or linked attenuation pathways for biodegradable DOM and TrOCs. Strong correlations between TrOCs and DOM compound classes as well as high attenuation of TrOCs primarily occurred in the hyporheic zone. This suggests high potential for DOM turnover and TrOC mitigation in rivers if hyporheic exchange is sufficient.

Invertebrate and Microbial Response to Hyporheic Restoration of an Urban Stream

All cities face complex challenges managing urban stormwater while also protecting urban water bodies. Green stormwater infrastructure and process-based restoration offer alternative strategies that prioritize watershed connectivity. We report on a new urban floodplain restoration technique being tested in the City of Seattle, USA: an engineered hyporheic zone. The hyporheic zone has long been an overlooked component in floodplain restoration. Yet this subsurface area offers enormous potential for stormwater amelioration and is a critical component of healthy streams. From 2014 to 2017, we measured hyporheic temperature, nutrients, and microbial and invertebrate communities at three paired stream reaches with and without hyporheic restoration. At two of the three pairs, water temperature was significantly lower at the restored reach, while dissolved organic carbon and microbial metabolism were higher. Hyporheic invertebrate density and taxa richness were significantly higher across all three restored reaches. These are some of the first quantified responses of hyporheic biological communities to restoration. Our results complement earlier reports of enhanced hydrologic and chemical functioning of the engineered hyporheic zone. Together, this research demonstrates that incorporation of hyporheic design elements in floodplain restoration can enhance temperature moderation, habitat diversity, contaminant filtration, and the biological health of urban streams.

Temporal Temperature Distribution in Shallow Sediments of a Large Shallow Lake and Estimated Hyporheic Flux Using VFLUX 2 Model

Identifying and quantifying exchange flux across sediment-water interface is crucial when considering water and nutrient contributions to a eutrophic lake. In this study, observed temporal temperature distributions in shallow sediment of Lake Taihu (Eastern China) based on three-depth sensors at 14 sites throughout 2016 were used to assess temporal water exchange patterns. Results show that temporal temperature in shallow sediments differed with sampling sites and depths and the temperature amplitudes also clearly shrunk as the offshore distance increasing. Exchange fluxes estimated using the VFLUX 2 model based on temperature amplitude show that alternating-direction temporal flow exists in the eastern zone of Lake Taihu with averages of −13.0, −0.6, and 3.4 mm day−1 (negative represents discharging into the lake) at three nearshore sites (0.5, 2.0, and 6.0 km away from the shoreline, respectively). Whereas downwelling flow occurred throughout almost the entire year with averages of 37.7, 23.5, and 6.6 mm day−1 at the three southern nearshore sites, respectively. However, upwelling flow occurred throughout almost the entire year and varied widely in the western zone with averages of −74.8, 45.9, and −27.0 mm day–1 and in the northern zone with averages of −76.2, −55.3, and −51.1 mm day−1. The estimated fluxes in the central zone were relatively low and varied slightly during the entire year (−15.1 to 22.5 mm day−1 with an average of −0.7 mm day−1). Compared with the sub sensor pair (at 5 and 10 cm), the estimated hyporheic fluxes based on the top sensor pair (at 0 and 5 cm) varied within wider ranges and exhibited relatively larger values. Effects of upwelling flow at the western and northern zones need to be paid attention to on nearshore water quality particularly during winter and spring seasons. Estimated flow patterns at the four zones summarily reflect the seasonal water interaction near the sediment surface of Lake Taihu and are beneficial to improve its comprehensive management. Thermal dispersivity usually used for estimating the thermal diffusivity is more sensitive for upward hyporheic flux estimating even if with a low flux. Temperature amplitude ratio method can be used to estimate the exchange flux and suitable for low flux conditions (either upwelling or downwelling). A better evaluation of the exchange flux near inclined nearshore zones might need an optimized installation of temperature sensors along with the potential flow path and/or a vertical two-dimensional model in the future.

Bedform characteristics and biofilm community development interact to modify hyporheic exchange

The physical and biological attributes of riverine ecosystems interact in a complex manner which can affect the hydrodynamic behaviour of the system. This can alter the mixing characteristics of a river at the sediment-water interface. Research on hyporheic exchange has increased in recent years driven by a greater appreciation for the importance of this dynamic ecotone in connecting and regulating river systems. An understanding of process-based interactions driving hyporheic exchange is still limited, specifically the feedbacks between the physical and biological controlling factors. The interplay between bed morphology and sediment size on biofilm community development and the impact on hyporheic exchange mechanisms, was experimentally considered. Purpose built recirculating flume systems were constructed and three profiles of bedform investigated: i) flat, ii) undulating λ = 1 m, ii) undulating λ = 0.2 m, across two different sized sediments (0.5 mm and 5 mm). The influence of biofilm growth and bedform interaction on hyporheic exchange was explored, over time, using discrete repeat injections of fluorescent dye into the flumes. Hyporheic exchange rates were greatest in systems with larger sediment sizes (5 mm) and with more bedforms (undulating λ = 0.2). Sediment size was a dominant control in governing biofilm growth and hyporheic exchange in systems with limited bedform. In systems where bedform was prevalent, sediment size and biofilm appeared to no longer be a control on exchange due to the physical influence of advective pumping. Here, exchange rates within these environments were more consistent overtime, despite greater microbial growth. As such, bedform has the potential to overcome the rate limiting effects of biotic factors on hyporheic exchange and sediment size on microbial penetration. This has implications for pollutant and nutrient penetration; bedforms increase hydrological connectivity, generating the opportunity to support microbial communities at depth and as such, improve the self-purification ability of river systems.

Fate of Trace Organic Compounds in Hyporheic Zone Sediments of Contrasting Organic Carbon Content and Impact on the Microbiome

The organic carbon in streambed sediments drives multiple biogeochemical reactions, including the attenuation of organic micropollutants. An attenuation assay using sediment microcosms differing in the initial total organic carbon (TOC) revealed higher microbiome and sorption associated removal efficiencies of trace organic compounds (TrOCs) in the high-TOC compared to the low-TOC sediments. Overall, the combined microbial and sorption associated removal efficiencies of the micropollutants were generally higher than by sorption alone for all compounds tested except propranolol whose removal efficiency was similar via both mechanisms. Quantitative real-time PCR and time-resolved 16S rRNA gene amplicon sequencing revealed that higher bacterial abundance and diversity in the high-TOC sediments correlated with higher microbial removal efficiencies of most TrOCs. The bacterial community in the high-TOC sediment samples remained relatively stable against the stressor effects of TrOC amendment compared to the low-TOC sediment community that was characterized by a decline in the relative abundance of most phyla except Proteobacteria. Bacterial genera that were significantly more abundant in amended relative to unamended sediment samples and thus associated with biodegradation of the TrOCs included Xanthobacter, Hyphomicrobium, Novosphingobium, Reyranella and Terrimonas. The collective results indicated that the TOC content influences the microbial community dynamics and associated biotransformation of TrOCs as well as the sorption potential of the hyporheic zone sediments.

Fate of selected neonicotinoid insecticides in soil-water systems: Current state of the art and knowledge gaps

The occurrence of emerging contaminants, such as: personal care products, medicines, pharmaceuticals, pesticides, and their transformation products in the environment is of concern for human health and aquatic ecosystems due to their high persistence, toxicity and potential to bioaccumulation. Among pesticides, the main attention and thus our focus is on neonicotinoids: acetamiprid, clothianidin, imidacloprid, thiacloprid and thiamethoxam, which are widely used classes of insecticides in agriculture. Determining the associated risk to humans and ecosystems from neonicotinoid insecticides requires detailed understanding of their fate and transport in the environment which is complex and includes diverse pathways and processes depending on environmental compartments in which they occur. This paper critically reviews the current state of the art about processes, parameters and phenomena influencing the fate of neonicotinoid insecticides in soil-water systems (i.e. soil and groundwater), and reveals existing knowledge gaps. Sorption, biodegradation, chemical transformations of neonicotinoid insecticides in the soil and leaching to the groundwater, as well as groundwater/surface water interactions are highlighted, as they determine their further migration from sources, through soils to groundwater systems and then to other environmental compartments posing ecological and human risks. A number of key knowledge gaps in fate of neonicotinoid insecticides in soil-water systems are identified, that concern mostly processes and pathways occurring in the groundwater, and require further research to assess the associated risk to humans and ecosystems.

Grain size tunes microbial community assembly and nitrogen transformation activity under frequent hyporheic exchange: A column experiment

Hyporheic zones (HZ) are hotspots for biogeochemical reactions where groundwater and surface water mix. River dam buildings and other hydrologic controls alter the sediment grain size distribution and modify the downstream hyporheic exchange, with cascading effects on geochemical and microbial processes in river corridors. In this lab-scale column experiment, the N transformations in HZ filled with sediments in different grain sizes were investigated with a focus on understanding the interplay among variational hydraulic connectivity, microbial community structure, functional potential under frequent groundwater-surface water exchange. Porosity was identified as the main driver determining bacterial community assembly in HZ sediments. Significant microbial zonation was observed along the columns and the degree of co-occurrence of bacterial communities in the Fine column was lower than that in the Coarse and Mix columns. The Coarse column allowed for almost 2.47 times the exchange flux relative to the Fine column, and generates the fastest DO consumption rate (-6.52 μg O₂/L·s). The enrichment of nitrifiers, i.e., Cytophagaceae and Bacillaceae and nitrification functional genes, i.e., amoA_AOA and amoA_AOB revealed the higher nitrification potential in column filled with coarse sediments. In comparison, the highest NH₄⁺ production rates (2.4 × 10^-3 μg N/L·s) took place in Fine column. The higher abundancies of denitrifiers such as Comamonadaceae and Lysobacter and enrichment of functional genes of nirK and nirS interestingly suggested the elevated denitrification potential in Fine column in a more anaerobic environment. The results implied that variations in microbial functional potential and associated nitrogen transformation may occur in size-fractioned HZ to dynamic hyporheic exchange, which added new knowledge to the underlying biogeochemical and ecological processes in regulated river corridors.

Ibuprofen Degradation and Associated Bacterial Communities in Hyporheic Zone Sediments

Ibuprofen, a non-steroidal anti-inflammatory pain reliever, is among pharmaceutical residues of environmental concern ubiquitously detected in wastewater effluents and receiving rivers. Thus, ibuprofen removal potentials and associated bacteria in the hyporheic zone sediments of an impacted river were investigated. Microbially mediated ibuprofen degradation was determined in oxic sediment microcosms amended with ibuprofen (5, 40, 200, and 400 µM), or ibuprofen and acetate, relative to an un-amended control. Ibuprofen was removed by the original sediment microbial community as well as in ibuprofen-enrichments obtained by re-feeding of ibuprofen. Here, 1-, 2-, 3-hydroxy- and carboxy-ibuprofen were the primary transformation products. Quantitative real-time PCR analysis revealed a significantly higher 16S rRNA abundance in ibuprofen-amended relative to un-amended incubations. Time-resolved microbial community dynamics evaluated by 16S rRNA gene and 16S rRNA analyses revealed many new ibuprofen responsive taxa of the Acidobacteria, Actinobacteria, Bacteroidetes, Gemmatimonadetes, Latescibacteria, and Proteobacteria. Two ibuprofen-degrading strains belonging to the genera Novosphingobium and Pseudomonas were isolated from the ibuprofen-enriched sediments, consuming 400 and 300 µM ibuprofen within three and eight days, respectively. The collective results indicated that the hyporheic zone sediments sustain an efficient biotic (micro-)pollutant degradation potential, and hitherto unknown microbial diversity associated with such (micro)pollutant removal.

Groundwater–Surface Water Interaction—Analytical Approach

Modelling of water flow in the hyporheic zone and calculations of water exchange between groundwater and surface waters are important issues in modern environmental research. The article presents the Analytical Hyporheic Flux approach (AHF) permitting calculation of the amount of water exchange in the hyporheic zone, including vertical water seepage through the streambed and horizontal seepage through river banks. The outcome of the model, namely water fluxes, is compared with the corresponding results from the numerical model SEEP2D and simple Darcy-type model. The errors of the AHF model, in a range of 11–16%, depend on the aspect ratio of water depth to river width, and the direction of the river–aquifer water exchange, i.e., drainage or infiltration. The AHF model errors are significantly lower compared to the often-used model based on vertical water seepage through the streambed described by Darcy’s law.

Optimal In-Stream Structure Design through Considering Nitrogen Removal in Hyporheic Zone

The hyporheic zone (HZ), the region beneath or alongside a streambed, can play a vital role in a stream ecosystem. Previous studies have examined the impacts of in-stream structures on the HZ and river restoration; however, studies on optimizing the design of in-stream structures are still lacking. Therefore, this study aims to propose a method for optimizing the design of in-stream structures (e.g., weirs) through comprehensively considering both nitrogen removal amount (NRA) and nitrogen removal ratio (NRR) in the HZ based on numerical modelling. The Hydrologic Engineering Center’s River Analysis System (HEC-RAS) and COMSOL Multiphysics are employed for surface water and hyporheic flow simulations, respectively, and these two models are coupled by the hydraulic head along the surface of the streambed. The NRA and NRR are both closely related with residence time (RT), while the NRA is also influenced by hyporheic flux. Using the model outputs under different scenarios, regression equations for estimating the relevant variables (e.g., the maximum upstream distance in the subsurface flow influenced by the weir, the RT, and the hyporheic flux) are proposed. Then, the cumulative NRA (CNRA) and NRR can be calculated, and an objective function is formulated as the product of the normalized CNRA and NRR. The results show that the optimal height of the weir can be obtained based on the proposed method, and the validation shows the good general performance of this method. Sensitivity analysis indicates that the optimal height generally can be sensitive to the river discharge, i.e., the optimal height increases when the river discharge increases and vice versa. In addition, it is observed that, in the case of the optimal height, hyporheic flux increases when the slope increases while the influence of depth to bedrock on hyporheic flux is not significant. This study enhances our understanding of the optimal in-stream structure design, and potentially benefits river restoration in the face of continual degradation caused by human activities.

Hydrodynamic Modeling and Simulation of Water Residence Time in the Estuary of the Lower Amazon River

Studies about the hydrodynamic behavior in the lower Amazon River remain scarce, despite their relevance and complexity, and the Water Residence Time (Rt) of this Amazonian estuary remains poorly unknown. Therefore, the present study aims to numerically simulate three seasonal Rt scenarios based on a calibrated hydrodynamic numerical model (SisbaHiA) applied to a representative stretch of the lower Amazon River. The following methodological steps were performed: (a) establishing experimental water flow in natural channels; (b) statistically test numerical predictions (tidal range cycles for different hydrologic periods); and (c) simulating velocity fields and water discharge associated with Rt numerical outputs of the hydrodynamic model varied from 14 ≤ Rt ≤ 22 days among different seasonal periods. This change has shown the significant influence of hydrologic period and geomorphological features on Rt. Rt, in its turn, has shown significant spatial heterogeneity, depending on location and stretch of the channels. Comparative analyses between simulated and experimental parameters evidenced statistical correlations higher than 0.9. We conclude that the generated Rt scenarios were consistent with other similar studies in the literature. Therefore, they depicted the applicability of the hydrodynamics to the conservation of the Amazonian aquatic ecosystem, as well as its relevance for biochemical and pollutant dispersion studies, which still remain scarce in the literature.

Effect of Hyporheic Exchange on Macroinvertebrate Community in the Weihe River Basin, China

The effect of hyporheic exchange on macroinvertebrates is a significant topic in ecohydraulics. A field study was conducted during May and June 2017 to investigate the impacts of magnitude and patterns of hyporheic exchange on the sediment macroinvertebrate community in the Weihe River basin. The results demonstrate that upwelling flows cause resuspension of riverbed sediment, increasing the proportion of swimmer groups (such as Baetidae) in the macroinvertebrate community. However, large resuspension of river bed sediment results in a reduced abundance of macroinvertebrates. By controlling the transport processes of dissolved oxygen (DO), dissolved organic carbon (DOC), nutrients, temperature, and different patterns of hyporheic exchange strongly influence the structure of macroinvertebrate communities. Downwelling is more likely to produce rich invertebrate communities than upwelling. The magnitude for the hyporheic flux of 150–200 mm/d was optimal for the macroinvertebrate community in the Weihe River Basin. Above or below this rate results in a decline in community abundance and diversity. We suggest that research is conducted to better understand the effects of hyporheic exchange across bedforms on macroinvertebrate communities. The study supports any activities to preserve the ecological functions and health of rivers dominated by fine-grained sediments.

Determining the Impact of Riparian Wetlands on Nutrient Cycling, Storage and Export in Permeable Agricultural Catchments

The impact of riparian wetlands on the cycling, retention and export of nutrients from land to water varies according to local environmental conditions and is poorly resolved in catchment management approaches. To determine the role a specific wetland might play in a catchment mitigation strategy, an alternative approach is needed to the high-frequency and spatially detailed monitoring programme that would otherwise be needed. Here, we present a new approach using a combination of novel and well-established geochemical, geophysical and isotope ratio methods. This combined approach was developed and tested against a 2-year high-resolution sampling programme in a lowland permeable wetland in the Lambourn catchment, UK. The monitoring programme identified multiple pathways and water sources feeding into the wetland, generating large spatial and temporal variations in nutrient cycling, retention and export behaviours within the wetland. This complexity of contributing source areas and biogeochemical functions within the wetland were effectively identified using the new toolkit approach. We propose that this technique could be used to determine the likely net source/sink function of riparian wetlands prior to their incorporation into any catchment management plan, with relatively low resource implications when compared to a full high-frequency nutrient speciation and isotope geochemistry-based monitoring approach.

Differential responses of stream water and bed sediment microbial communities to watershed degradation

The importance of microbial communities in the function of lotic ecosystems is unequivocal. However, traditional watershed studies on biodiversity have mostly focused on benthic macroinvertebrates, macroalgae and fish assemblages. Here, we investigated the diversity and interaction patterns of microbial communities in water and bed sediment of streams impacted by intensive watershed activities versus streams with relatively pristine conditions via next-generation sequencing of 16S rRNA amplicons using Illumina HiSeq platform. Both water and sediment microbial communities at forested sites had higher mean alpha-diversity than developed sites. Although microbial alpha-diversity indices were generally higher in bed sediment than water, they were comparable at forested sites. In addition, losses of taxa important in nitrogen cycle were evident particularly in bed sediment of developed sites. Interactions among microorganisms visualized by microbial network were more complex at forested sites versus developed sites, with more keystone taxa predominantly from sediment. Together, these findings suggest stream water and bed sediment microbial communities may be affected by watershed disturbances in distinctive ways, and losses of important functional microbial players and keystone taxa in bed sediment may result in decline of ecosystem functions and services. Therefore, cautions should be taken when implementing remediation strategies such as sediment dredging, and reseeding contaminated sites with key microbial players may catalyze the recovery of ecosystems.

Is the Hyporheic Zone Relevant beyond the Scientific Community?

Rivers are important ecosystems under continuous anthropogenic stresses. The hyporheic zone is a ubiquitous, reactive interface between the main channel and its surrounding sediments along the river network. We elaborate on the main physical, biological, and biogeochemical drivers and processes within the hyporheic zone that have been studied by multiple scientific disciplines for almost half a century. These previous efforts have shown that the hyporheic zone is a modulator for most metabolic stream processes and serves as a refuge and habitat for a diverse range of aquatic organisms. It also exerts a major control on river water quality by increasing the contact time with reactive environments, which in turn results in retention and transformation of nutrients, trace organic compounds, fine suspended particles, and microplastics, among others. The paper showcases the critical importance of hyporheic zones, both from a scientific and an applied perspective, and their role in ecosystem services to answer the question of the manuscript title. It identifies major research gaps in our understanding of hyporheic processes. In conclusion, we highlight the potential of hyporheic restoration to efficiently manage and reactivate ecosystem functions and services in river corridors.

Designing field-based investigations of organic micropollutant fate in rivers

Organic micropollutants in rivers are emitted via diffuse and point sources like from agricultural practice or wastewater treatment plants (WWTP). Extensive laboratory and field experiments have been conducted to understand emissions and fate of these pollutants in freshwaters. Nevertheless, data is often difficult to compare since common protocols for appropriate approaches are largely missing. Thus, interpretation of the observed changes in substance concentrations and of the underlying fate of these compounds downstream of the chemical input into the river is still challenging. To narrow this research gap, (1) process understanding and (2) measurement approaches for field-based investigations are critically reviewed in this article. The review includes, on the one hand, processes that change the volume of the water (hydrological processes) and, on the other hand, processes that affect the substance mass within the water (distribution and transformation). Environmental boundary conditions for the purpose of better comparability of different attenuation studies, as well as promising state-of-the-art measurement approaches from different disciplines, are presented. This overview helps to develop a tailored procedure to assess turnover mechanisms of organic micropollutants under field conditions. In this respect, further research needs to standardize interdisciplinary approaches to increase the informative value of collected data.

Depth and vertical hydrodynamics constrain the size structure of a lowland streambed community

Abundance-body mass (N-M) relationships are prominent macroecological patterns and provide an integrated measurement of the structure and energy flow through natural communities. However, little is known about how N-M relationships are constrained by local environmental conditions. Here, we quantify how sediment depth and direction of surface-groundwater exchange (vertical hydrodynamics), two major drivers of the streambed ecology, determine N-M scaling in a sandy lowland European stream. Streambed assemblages included flagellates, ciliates, meiofauna and macroinvertebrates, and spanned five orders of magnitude in body mass. We detected a significant interaction of body mass with depth and vertical hydrodynamics with a sharp reduction in N-M slopes in the hyporheic zone and under upwelling conditions. These results revealed that streambed assemblages become more size-structured as environmental constraints increase with direct implications for the metabolic capacity and functioning of the system.

Comparing biotic drivers of litter breakdown across stream compartments

Litter breakdown in the streambed is an important pathway in organic carbon cycling and energy transfer in the biosphere that is mediated by a wide range of streambed organisms. However, most research on litter breakdown to date has focused on a small fraction of the taxa that drive it (e.g. microbial vs. macroinvertebrate-mediated breakdown) and has been limited to the benthic zone (BZ). Despite the importance of the hyporheic zone (HZ) as a bioreactor, little is known about what, or who, mediates litter breakdown in this compartment and whether breakdown rates differ between the BZ and HZ. Here, we explore the relationship between litter breakdown and the variation in community structure of benthic and hyporheic communities by deploying two standardized bioassays (cotton strips and two types of commercially available tea bags) in 30 UK streams that encompass a range of environmental conditions. Then, we modelled these assays as a response of the streambed compartment and the biological features of the streambed assemblage (Prokaryota, Protozoa and Eumetazoa invertebrates) to understand the generality and efficiency of litter processing across communities. Litter breakdown was much faster in the BZ compared with the HZ (around 5 times higher for cotton strips and 1.5 times faster for the tea leaves). However, differences in litter breakdown between the BZ and the HZ were mediated by the biological features of the benthos and the hyporheos. Biomass of all the studied biotic groups, α-diversity of Eumetazoa invertebrates and metabolic diversity of Prokaryota were important predictors that were positively related to breakdown coefficients demonstrating their importance in the functioning of the streambed ecosystem. Our study uses a novel multimetric bioassay that is able to disentangle the contribution by Prokaryota, Protozoa and Eumetazoa invertebrates to litter breakdown. In doing so, our study reveals new insights into how organic matter decomposition is partitioned across biota and streambed compartments.

Antibiotic pollution in surface fresh waters: Occurrence and effects

Worldwide, antibiotic usage exceeds 100,000 tons per year and there is increasing concern over the fate of these substances. Antibiotics are ubiquitous in the environment and significant concentrations have been detected in fresh waters. In this review, we highlight important aspects of antibiotic pollution in fresh waters: that concentrations of antibiotics in the environment are substantial, that micro-organisms are susceptible to this, that bacteria can evolve resistance in the environment, and that antibiotic pollution affects natural food webs while interacting with other stressors; which taken together poses a number of challenges for environmental scientists. In the literature, we found examples of considerable antibiotic pollution in fresh waters. In the Americas, antibiotic concentrations of up to 15 μg/L have been measured; with higher concentrations reported from European and African studies (over 10 μg/L and 50 μg/L respectively), and in Asian-pacific countries concentrations over 450 μg/L have been detected. While these concentrations might not be deemed harmful to humans, non-target freshwater organisms could be affected by them. Bioassays show that some of the antibiotics found in surface waters affect microbes at concentrations below 10 μg/L. Among the most potent antibiotics are those that prevail in streams and rivers in these concentrations, such as ciprofloxacin. Sub-lethal concentrations might not kill prokaryotes but contribute to increased bacterial resistance and change the composition of single-celled communities, as demonstrated in laboratory experiments. This has implications for the microbial food web (e.g. interactions among and between bacteria and their protozoan consumers) and by extension, larger organisms and ecosystem health. The fact that the effects of antibiotics are extremely context-dependent represents a challenge, particularly for in vitro research. We suggest future research avenues, taking into account food web experiments, antibiotics interacting with one another (and other stressors) and discuss how these can help to answer multi-layered research questions.

Profiling microbial communities in a watershed undergoing intensive anthropogenic activities

In lotic ecosystems highly susceptible to anthropogenic activities, the influences of environmental variables on microbial communities and their functions remain poorly understood, despite our rapidly increasing sequencing ability. In this study, we profiled the microbial communities in the hyporheic sediments of a watershed undergoing intensive anthropogenic activities via next-generation sequencing of 16S rRNA V4-V5 hypervariable regions on Illumina MiSeq platform. Tidal impacts on microbial communities were investigated via co-occurrence networks. In addition, the influences of physicochemical variables including salinity, and the concentrations of nutrients, organic matter and heavy metals on the microbial communities were explored via canonical correspondence analyses. The sediment samples were collected from 19 sites covering the whole main river stem of the target watershed (n = 19; Maozhou river watershed, Shenzhen, China). The samples were sub-divided in the field for microbiological analyses and measurements of physicochemical variables. The results indicated that core microbiome was associated with archaea methanogens and bacteria members from Proteobacteria, Chloroflexi, Bacteroidetes, Acidobacteria, Synergistetes and Firmicutes, among which, gram-negative and anaerobic bacteria genera contributing to the cycling of carbon, nitrogen and sulfur were predominant. Site-specific microbiomes were revealed that may serve as indicators of local environmental conditions (e.g., members affiliated to Oceanospirillales were abundant at sites with salt intrusion). Distinct microbial co-occurrence networks were identified for non-tidal, inter-tidal and tidal sites. Major environmental factors influencing microbial community composition included the concentrations of nitrate and bicarbonate in river water, pore water concentrations of sulfate, dissolved organic carbon and electrical conductivity, as well as manganese concentrations associated with the solid sediment. Collectively, the results of this study provide fundamental insights into the influence of environmental perturbations on microbial community composition in a lotic system, which may aid in the design of effective remediation and/or restoration strategies in the target watershed and beyond.