1
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Leopold DA. The big mixup: Neural representation during natural modes of primate visual behavior. Curr Opin Neurobiol 2024; 88:102913. [PMID: 39214044 PMCID: PMC11392606 DOI: 10.1016/j.conb.2024.102913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 08/06/2024] [Accepted: 08/07/2024] [Indexed: 09/04/2024]
Abstract
The primate brain has evolved specialized visual capacities to navigate complex physical and social environments. Researchers studying cortical circuits underlying these capacities have traditionally favored the use of simplified tasks and brief stimulus presentations in order to isolate cognitive variables with tight experimental control. As a result, operational theories about visual brain function have come to emphasize feature detection, hierarchical stimulus encoding, top-down task modulation, and functional segregation in distinct cortical areas. Recently, however, experimental paradigms combining natural behavior with electrophysiological recordings have begun to offer a distinctly different portrait of how the brain takes in and analyzes its visual surroundings. The present article reviews recent work in this area, highlighting some of the more surprising findings in domains of social vision and spatial navigation along with shifts in thinking that have begun to emanate from this approach.
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Affiliation(s)
- David A Leopold
- Section on Cognitive Neurophysiology and Imaging, Systems Neurodevelopment Laboratory, National Institute of Mental Health, Bethesda, MD 20892, USA; National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
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2
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Brucklacher M, Pezzulo G, Mannella F, Galati G, Pennartz CMA. Learning to segment self-generated from externally caused optic flow through sensorimotor mismatch circuits. Neural Netw 2024; 181:106716. [PMID: 39383679 DOI: 10.1016/j.neunet.2024.106716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 06/09/2024] [Accepted: 09/07/2024] [Indexed: 10/11/2024]
Abstract
Efficient sensory detection requires the capacity to ignore task-irrelevant information, for example when optic flow patterns created by egomotion need to be disentangled from object perception. To investigate how this is achieved in the visual system, predictive coding with sensorimotor mismatch detection is an attractive starting point. Indeed, experimental evidence for sensorimotor mismatch signals in early visual areas exists, but it is not understood how they are integrated into cortical networks that perform input segmentation and categorization. Our model advances a biologically plausible solution by extending predictive coding models with the ability to distinguish self-generated from externally caused optic flow. We first show that a simple three neuron circuit produces experience-dependent sensorimotor mismatch responses, in agreement with calcium imaging data from mice. This microcircuit is then integrated into a neural network with two generative streams. The motor-to-visual stream consists of parallel microcircuits between motor and visual areas and learns to spatially predict optic flow resulting from self-motion. The second stream bidirectionally connects a motion-selective higher visual area (mHVA) to V1, assigning a crucial role to the abundant feedback connections to V1: the maintenance of a generative model of externally caused optic flow. In the model, area mHVA learns to segment moving objects from the background, and facilitates object categorization. Based on shared neurocomputational principles across species, the model also maps onto primate visual cortex. Our work extends Hebbian predictive coding to sensorimotor settings, in which the agent actively moves - and learns to predict the consequences of its own movements.
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Affiliation(s)
- Matthias Brucklacher
- Cognitive and Systems Neuroscience, University of Amsterdam, 1098XH Amsterdam, Netherlands.
| | - Giovanni Pezzulo
- Institute of Cognitive Sciences and Technologies, National Research Council, 00196 Rome, Italy
| | - Francesco Mannella
- Institute of Cognitive Sciences and Technologies, National Research Council, 00196 Rome, Italy
| | - Gaspare Galati
- Brain Imaging Laboratory, Department of Psychology, Sapienza University, 00185 Rome, Italy
| | - Cyriel M A Pennartz
- Cognitive and Systems Neuroscience, University of Amsterdam, 1098XH Amsterdam, Netherlands
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3
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Tariq MF, Sterrett SC, Moore S, Lane, Perkel DJ, Gire DH. Dynamics of odor-source localization: Insights from real-time odor plume recordings and head-motion tracking in freely moving mice. PLoS One 2024; 19:e0310254. [PMID: 39325742 PMCID: PMC11426488 DOI: 10.1371/journal.pone.0310254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Accepted: 08/27/2024] [Indexed: 09/28/2024] Open
Abstract
Animals navigating turbulent odor plumes exhibit a rich variety of behaviors, and employ efficient strategies to locate odor sources. A growing body of literature has started to probe this complex task of localizing airborne odor sources in walking mammals to further our understanding of neural encoding and decoding of naturalistic sensory stimuli. However, correlating the intermittent olfactory information with behavior has remained a long-standing challenge due to the stochastic nature of the odor stimulus. We recently reported a method to record real-time olfactory information available to freely moving mice during odor-guided navigation, hence overcoming that challenge. Here we combine our odor-recording method with head-motion tracking to establish correlations between plume encounters and head movements. We show that mice exhibit robust head-pitch motions in the 5-14Hz range during an odor-guided navigation task, and that these head motions are modulated by plume encounters. Furthermore, mice reduce their angles with respect to the source upon plume contact. Head motions may thus be an important part of the sensorimotor behavioral repertoire during naturalistic odor-source localization.
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Affiliation(s)
- Mohammad F. Tariq
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington, United States of America
- Department of Psychology, University of Washington, Seattle, Washington, United States of America
| | - Scott C. Sterrett
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington, United States of America
- Department of Psychology, University of Washington, Seattle, Washington, United States of America
| | - Sidney Moore
- Department of Psychology, University of Washington, Seattle, Washington, United States of America
| | - Lane
- Department of Psychology, University of Washington, Seattle, Washington, United States of America
- Department of Psychology, Seattle University, Seattle, Washington, United States of America
| | - David J. Perkel
- Departments of Biology & Otolaryngology, University of Washington, Seattle, Washington, United States of America
| | - David H. Gire
- Department of Psychology, University of Washington, Seattle, Washington, United States of America
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4
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Nigro M, Tortorelli LS, Yang H. Distinct roles of prefrontal cortex neurons in set shifting. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.08.20.608808. [PMID: 39229035 PMCID: PMC11370324 DOI: 10.1101/2024.08.20.608808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
Cognitive flexibility, the ability to adjust behavioral strategies in response to changing environmental contingencies, requires adaptive processing of internal states and contextual cues to guide goal-oriented behavior, and is dependent on prefrontal cortex (PFC) functions. However, the neurophysiological underpinning of how the PFC supports cognitive flexibility is not well understood and has been under active investigation. We recorded spiking activity from single PFC neurons in mice performing the attentional set-shifting task, where mice learned to associate different contextually relevant sensory stimuli to reward. We identified subgroups of PFC neurons encoding task context, choice and trial outcome. Putative fast-spiking neurons were more involved in representing outcome and choice than putative regular-spiking neurons. Regression model further revealed that task context and trial outcome modulated the activity of choice-encoding neurons in rule-dependent and cell type-dependent manners. Together, our data provide new evidence to elucidate PFC's role in cognitive flexibility, suggesting differential cell type-specific engagement during set shifting, and that both contextual rule representation and trial outcome monitoring underlie PFC's unique capacity to support flexible behavioral switching.
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Affiliation(s)
- Marco Nigro
- Department of Molecular, Cell and Systems Biology, University of California, Riverside, CA 92521, USA
| | - Lucas Silva Tortorelli
- Department of Molecular, Cell and Systems Biology, University of California, Riverside, CA 92521, USA
| | - Hongdian Yang
- Department of Molecular, Cell and Systems Biology, University of California, Riverside, CA 92521, USA
- Neuroscience Graduate Program, University of California, Riverside, CA 92521, USA
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5
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Mai J, Gargiullo R, Zheng M, Esho V, Hussein OE, Pollay E, Bowe C, Williamson LM, McElroy AF, Saunders JL, Goolsby WN, Brooks KA, Rodgers CC. Sound-seeking before and after hearing loss in mice. Sci Rep 2024; 14:19181. [PMID: 39160202 PMCID: PMC11333604 DOI: 10.1038/s41598-024-67577-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 07/11/2024] [Indexed: 08/21/2024] Open
Abstract
How we move our bodies affects how we perceive sound. For instance, head movements help us to better localize the source of a sound and to compensate for asymmetric hearing loss. However, many auditory experiments are designed to restrict head and body movements. To study the role of movement in hearing, we developed a behavioral task called sound-seeking that rewarded freely moving mice for tracking down an ongoing sound source. Over the course of learning, mice more efficiently navigated to the sound. Next, we asked how sound-seeking was affected by hearing loss induced by surgical removal of the malleus from the middle ear. After bilateral hearing loss sound-seeking performance drastically declined and did not recover. In striking contrast, after unilateral hearing loss mice were only transiently impaired and then recovered their sound-seek ability over about a week. Throughout recovery, unilateral mice increasingly relied on a movement strategy of sequentially checking potential locations for the sound source. In contrast, the startle reflex (an innate auditory behavior) was preserved after unilateral hearing loss and abolished by bilateral hearing loss without recovery over time. In sum, mice compensate with body movement for permanent unilateral damage to the peripheral auditory system. Looking forward, this paradigm provides an opportunity to examine how movement enhances perception and enables resilient adaptation to sensory disorders.
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Affiliation(s)
- Jessica Mai
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Rowan Gargiullo
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Megan Zheng
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Valentina Esho
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Osama E Hussein
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Eliana Pollay
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Cedric Bowe
- Neuroscience Graduate Program, Emory University, Atlanta, GA, 30322, USA
| | - Lucas M Williamson
- Neuroscience Graduate Program, Emory University, Atlanta, GA, 30322, USA
| | - Abigail F McElroy
- Neuroscience Graduate Program, Emory University, Atlanta, GA, 30322, USA
| | - Jonny L Saunders
- Department of Neurology, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - William N Goolsby
- Department of Cell Biology, Emory University School of Medicine, Atlanta, GA, 30322, USA
| | - Kaitlyn A Brooks
- Department of Otolaryngology-Head and Neck Surgery, Emory University School of Medicine, Atlanta, GA, 30308, USA
| | - Chris C Rodgers
- Department of Neurosurgery, Emory University School of Medicine, Atlanta, GA, 30322, USA.
- Department of Cell Biology, Emory University School of Medicine, Atlanta, GA, 30322, USA.
- Department of Biomedical Engineering, Georgia Tech and Emory University School of Medicine, Atlanta, GA, 30322, USA.
- Department of Biology, Emory College of Arts and Sciences, Atlanta, GA, 30322, USA.
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6
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Horrocks EAB, Rodrigues FR, Saleem AB. Flexible neural population dynamics govern the speed and stability of sensory encoding in mouse visual cortex. Nat Commun 2024; 15:6415. [PMID: 39080254 PMCID: PMC11289260 DOI: 10.1038/s41467-024-50563-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 07/15/2024] [Indexed: 08/02/2024] Open
Abstract
Time courses of neural responses underlie real-time sensory processing and perception. How these temporal dynamics change may be fundamental to how sensory systems adapt to different perceptual demands. By simultaneously recording from hundreds of neurons in mouse primary visual cortex, we examined neural population responses to visual stimuli at sub-second timescales, during different behavioural states. We discovered that during active behavioural states characterised by locomotion, single-neurons shift from transient to sustained response modes, facilitating rapid emergence of visual stimulus tuning. Differences in single-neuron response dynamics were associated with changes in temporal dynamics of neural correlations, including faster stabilisation of stimulus-evoked changes in the structure of correlations during locomotion. Using Factor Analysis, we examined temporal dynamics of latent population responses and discovered that trajectories of population activity make more direct transitions between baseline and stimulus-encoding neural states during locomotion. This could be partly explained by dampening of oscillatory dynamics present during stationary behavioural states. Functionally, changes in temporal response dynamics collectively enabled faster, more stable and more efficient encoding of new visual information during locomotion. These findings reveal a principle of how sensory systems adapt to perceptual demands, where flexible neural population dynamics govern the speed and stability of sensory encoding.
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Affiliation(s)
- Edward A B Horrocks
- Institute of Behavioural Neuroscience, University College London, London, WC1V 0AP, UK.
| | - Fabio R Rodrigues
- Institute of Behavioural Neuroscience, University College London, London, WC1V 0AP, UK
| | - Aman B Saleem
- Institute of Behavioural Neuroscience, University College London, London, WC1V 0AP, UK.
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7
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Barnes L, Davidson MJ, Alais D. The speed and phase of locomotion dictate saccade probability and simultaneous low-frequency power spectra. Atten Percept Psychophys 2024:10.3758/s13414-024-02932-4. [PMID: 39048846 DOI: 10.3758/s13414-024-02932-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/14/2024] [Indexed: 07/27/2024]
Abstract
Every day we make thousands of saccades and take thousands of steps as we explore our environment. Despite their common co-occurrence in a typical active state, we know little about the coordination between eye movements, walking behaviour and related changes in cortical activity. Technical limitations have been a major impediment, which we overcome here by leveraging the advantages of an immersive wireless virtual reality (VR) environment with three-dimensional (3D) position tracking, together with simultaneous recording of eye movements and mobile electroencephalography (EEG). Using this approach with participants engaged in unencumbered walking along a clear, level path, we find that the likelihood of eye movements at both slow and natural walking speeds entrains to the rhythm of footfall, peaking after the heel-strike of each step. Compared to previous research, this entrainment was captured in a task that did not require visually guided stepping - suggesting a persistent interaction between locomotor and visuomotor functions. Simultaneous EEG recordings reveal a concomitant modulation entrained to heel-strike, with increases and decreases in oscillatory power for a broad range of frequencies. The peak of these effects occurred in the theta and alpha range for slow and natural walking speeds, respectively. Together, our data show that the phase of the step-cycle influences other behaviours such as eye movements, and produces related modulations of simultaneous EEG following the same rhythmic pattern. These results reveal gait as an important factor to be considered when interpreting saccadic and time-frequency EEG data in active observers, and demonstrate that saccadic entrainment to gait may persist throughout everyday activities.
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Affiliation(s)
- Lydia Barnes
- School of Psychology, The University of Sydney, Sydney, NSW, Australia
| | | | - David Alais
- School of Psychology, The University of Sydney, Sydney, NSW, Australia
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8
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Quass GL, Rogalla MM, Ford AN, Apostolides PF. Mixed Representations of Sound and Action in the Auditory Midbrain. J Neurosci 2024; 44:e1831232024. [PMID: 38918064 PMCID: PMC11270520 DOI: 10.1523/jneurosci.1831-23.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 06/05/2024] [Accepted: 06/14/2024] [Indexed: 06/27/2024] Open
Abstract
Linking sensory input and its consequences is a fundamental brain operation. During behavior, the neural activity of neocortical and limbic systems often reflects dynamic combinations of sensory and task-dependent variables, and these "mixed representations" are suggested to be important for perception, learning, and plasticity. However, the extent to which such integrative computations might occur outside of the forebrain is less clear. Here, we conduct cellular-resolution two-photon Ca2+ imaging in the superficial "shell" layers of the inferior colliculus (IC), as head-fixed mice of either sex perform a reward-based psychometric auditory task. We find that the activity of individual shell IC neurons jointly reflects auditory cues, mice's actions, and behavioral trial outcomes, such that trajectories of neural population activity diverge depending on mice's behavioral choice. Consequently, simple classifier models trained on shell IC neuron activity can predict trial-by-trial outcomes, even when training data are restricted to neural activity occurring prior to mice's instrumental actions. Thus, in behaving mice, auditory midbrain neurons transmit a population code that reflects a joint representation of sound, actions, and task-dependent variables.
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Affiliation(s)
- Gunnar L Quass
- Department of Otolaryngology-Head & Neck Surgery, Kresge Hearing Research Institute, University of Michigan Medical School, Ann Arbor, Michigan 48109
| | - Meike M Rogalla
- Department of Otolaryngology-Head & Neck Surgery, Kresge Hearing Research Institute, University of Michigan Medical School, Ann Arbor, Michigan 48109
| | - Alexander N Ford
- Department of Otolaryngology-Head & Neck Surgery, Kresge Hearing Research Institute, University of Michigan Medical School, Ann Arbor, Michigan 48109
| | - Pierre F Apostolides
- Department of Otolaryngology-Head & Neck Surgery, Kresge Hearing Research Institute, University of Michigan Medical School, Ann Arbor, Michigan 48109
- Department of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan 48109
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9
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Oram TB, Tenzer A, Saraf-Sinik I, Yizhar O, Ahissar E. Co-coding of head and whisker movements by both VPM and POm thalamic neurons. Nat Commun 2024; 15:5883. [PMID: 39003286 PMCID: PMC11246487 DOI: 10.1038/s41467-024-50039-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 06/27/2024] [Indexed: 07/15/2024] Open
Abstract
Rodents continuously move their heads and whiskers in a coordinated manner while perceiving objects through whisker-touch. Studies in head-fixed rodents showed that the ventroposterior medial (VPM) and posterior medial (POm) thalamic nuclei code for whisker kinematics, with POm involvement reduced in awake animals. To examine VPM and POm involvement in coding head and whisker kinematics in awake, head-free conditions, we recorded thalamic neuronal activity and tracked head and whisker movements in male mice exploring an open arena. Using optogenetic tagging, we found that in freely moving mice, both nuclei equally coded whisker kinematics and robustly coded head kinematics. The fraction of neurons coding head kinematics increased after whisker trimming, ruling out whisker-mediated coding. Optogenetic activation of thalamic neurons evoked overt kinematic changes and increased the fraction of neurons leading changes in head kinematics. Our data suggest that VPM and POm integrate head and whisker information and can influence head kinematics during tactile perception.
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Affiliation(s)
- Tess Baker Oram
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Alon Tenzer
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Inbar Saraf-Sinik
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Ofer Yizhar
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Ehud Ahissar
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
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10
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Tariq MF, Sterrett SC, Moore S, Lane L, Perkel DJ, Gire DH. Dynamics of odor-source localization: Insights from real-time odor plume recordings and head-motion tracking in freely moving mice. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.11.10.566539. [PMID: 38014041 PMCID: PMC10680624 DOI: 10.1101/2023.11.10.566539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
Animals navigating turbulent odor plumes exhibit a rich variety of behaviors, and employ efficient strategies to locate odor sources. A growing body of literature has started to probe this complex task of localizing airborne odor sources in walking mammals to further our understanding of neural encoding and decoding of naturalistic sensory stimuli. However, correlating the intermittent olfactory information with behavior has remained a long-standing challenge due to the stochastic nature of the odor stimulus. We recently reported a method to record real-time olfactory information available to freely moving mice during odor-guided navigation, hence overcoming that challenge. Here we combine our odor-recording method with head-motion tracking to establish correlations between plume encounters and head movements. We show that mice exhibit robust head-pitch motions in the 5-14Hz range during an odor-guided navigation task, and that these head motions are modulated by plume encounters. Furthermore, mice reduce their angles with respect to the source upon plume contact. Head motions may thus be an important part of the sensorimotor behavioral repertoire during naturalistic odor-source localization.
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Affiliation(s)
- Mohammad F. Tariq
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington, USA
- Department of Psychology, University of Washington, Seattle, Washington, USA
| | - Scott C. Sterrett
- Graduate Program in Neuroscience, University of Washington, Seattle, Washington, USA
- Department of Psychology, University of Washington, Seattle, Washington, USA
| | - Sidney Moore
- Department of Psychology, University of Washington, Seattle, Washington, USA
| | - Lane Lane
- Department of Psychology, University of Washington, Seattle, Washington, USA
- Department of Psychology, Seattle University, Seattle, Washington, USA
| | - David J. Perkel
- Departments of Biology & Otolaryngology, University of Washington, Seattle, Washington, USA
| | - David H. Gire
- Department of Psychology, University of Washington, Seattle, Washington, USA
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11
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Federman N, Romano SA, Amigo-Duran M, Salomon L, Marin-Burgin A. Acquisition of non-olfactory encoding improves odour discrimination in olfactory cortex. Nat Commun 2024; 15:5572. [PMID: 38956072 PMCID: PMC11220071 DOI: 10.1038/s41467-024-49897-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 06/20/2024] [Indexed: 07/04/2024] Open
Abstract
Olfaction is influenced by contextual factors, past experiences, and the animal's internal state. Whether this information is integrated at the initial stages of cortical odour processing is not known, nor how these signals may influence odour encoding. Here we revealed multiple and diverse non-olfactory responses in the primary olfactory (piriform) cortex (PCx), which dynamically enhance PCx odour discrimination according to behavioural demands. We performed recordings of PCx neurons from mice trained in a virtual reality task to associate odours with visual contexts to obtain a reward. We found that learning shifts PCx activity from encoding solely odours to a regime in which positional, contextual, and associative responses emerge on odour-responsive neurons that become mixed-selective. The modulation of PCx activity by these non-olfactory signals was dynamic, improving odour decoding during task engagement and in rewarded contexts. This improvement relied on the acquired mixed-selectivity, demonstrating how integrating extra-sensory inputs in sensory cortices can enhance sensory processing while encoding the behavioural relevance of stimuli.
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Grants
- 108878 Canadian International Development Agency (Agence Canadienne de Développement International)
- PICT2018-0880 Ministry of Science, Technology and Productive Innovation, Argentina | National Agency for Science and Technology, Argentina | Fondo para la Investigación Científica y Tecnológica (Fund for Scientific and Technological Research)
- PICT2020-0360 Ministry of Science, Technology and Productive Innovation, Argentina | National Agency for Science and Technology, Argentina | Fondo para la Investigación Científica y Tecnológica (Fund for Scientific and Technological Research)
- PICT2020-1536 Ministry of Science, Technology and Productive Innovation, Argentina | National Agency for Science and Technology, Argentina | Fondo para la Investigación Científica y Tecnológica (Fund for Scientific and Technological Research)
- PICT2016-2758 Ministry of Science, Technology and Productive Innovation, Argentina | National Agency for Science and Technology, Argentina | Fondo para la Investigación Científica y Tecnológica (Fund for Scientific and Technological Research)
- PICT2017-4023 Ministry of Science, Technology and Productive Innovation, Argentina | National Agency for Science and Technology, Argentina | Fondo para la Investigación Científica y Tecnológica (Fund for Scientific and Technological Research)
- PIP2787 Ministerio de Ciencia, Tecnología e Innovación Productiva (Ministry of Science, Technology and Productive Innovation, Argentina)
- SPIRIT 216044 Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation)
- Fondo para la convergencia estructural del Mercosur–FOCEM grant cOF 03/11
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Affiliation(s)
- Noel Federman
- Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA)-CONICET-Partner Institute of the Max Planck Society, Godoy Cruz 2390, C1425FQD, Buenos Aires, Argentina.
| | - Sebastián A Romano
- Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA)-CONICET-Partner Institute of the Max Planck Society, Godoy Cruz 2390, C1425FQD, Buenos Aires, Argentina.
| | - Macarena Amigo-Duran
- Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA)-CONICET-Partner Institute of the Max Planck Society, Godoy Cruz 2390, C1425FQD, Buenos Aires, Argentina
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, PhD Program, Buenos Aires, Argentina
| | - Lucca Salomon
- Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA)-CONICET-Partner Institute of the Max Planck Society, Godoy Cruz 2390, C1425FQD, Buenos Aires, Argentina
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, PhD Program, Buenos Aires, Argentina
| | - Antonia Marin-Burgin
- Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA)-CONICET-Partner Institute of the Max Planck Society, Godoy Cruz 2390, C1425FQD, Buenos Aires, Argentina.
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12
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Cisek P, Green AM. Toward a neuroscience of natural behavior. Curr Opin Neurobiol 2024; 86:102859. [PMID: 38583263 DOI: 10.1016/j.conb.2024.102859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 03/04/2024] [Indexed: 04/09/2024]
Abstract
One of the most exciting new developments in systems neuroscience is the progress being made toward neurophysiological experiments that move beyond simplified laboratory settings and address the richness of natural behavior. This is enabled by technological advances such as wireless recording in freely moving animals, automated quantification of behavior, and new methods for analyzing large data sets. Beyond new empirical methods and data, however, there is also a need for new theories and concepts to interpret that data. Such theories need to address the particular challenges of natural behavior, which often differ significantly from the scenarios studied in traditional laboratory settings. Here, we discuss some strategies for developing such novel theories and concepts and some example hypotheses being proposed.
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Affiliation(s)
- Paul Cisek
- Department of Neuroscience, University of Montréal, Montréal, Québec, Canada.
| | - Andrea M Green
- Department of Neuroscience, University of Montréal, Montréal, Québec, Canada
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13
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Ambrad Giovannetti E, Rancz E. Behind mouse eyes: The function and control of eye movements in mice. Neurosci Biobehav Rev 2024; 161:105671. [PMID: 38604571 DOI: 10.1016/j.neubiorev.2024.105671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 03/12/2024] [Accepted: 04/08/2024] [Indexed: 04/13/2024]
Abstract
The mouse visual system has become the most popular model to study the cellular and circuit mechanisms of sensory processing. However, the importance of eye movements only started to be appreciated recently. Eye movements provide a basis for predictive sensing and deliver insights into various brain functions and dysfunctions. A plethora of knowledge on the central control of eye movements and their role in perception and behaviour arose from work on primates. However, an overview of various eye movements in mice and a comparison to primates is missing. Here, we review the eye movement types described to date in mice and compare them to those observed in primates. We discuss the central neuronal mechanisms for their generation and control. Furthermore, we review the mounting literature on eye movements in mice during head-fixed and freely moving behaviours. Finally, we highlight gaps in our understanding and suggest future directions for research.
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Affiliation(s)
| | - Ede Rancz
- INMED, INSERM, Aix-Marseille University, Marseille, France.
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14
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Steinfeld R, Tacão-Monteiro A, Renart A. Differential representation of sensory information and behavioral choice across layers of the mouse auditory cortex. Curr Biol 2024; 34:2200-2211.e6. [PMID: 38733991 DOI: 10.1016/j.cub.2024.04.040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2023] [Revised: 03/22/2024] [Accepted: 04/18/2024] [Indexed: 05/13/2024]
Abstract
The activity of neurons in sensory areas sometimes covaries with upcoming choices in decision-making tasks. However, the prevalence, causal origin, and functional role of choice-related activity remain controversial. Understanding the circuit-logic of decision signals in sensory areas will require understanding their laminar specificity, but simultaneous recordings of neural activity across the cortical layers in forced-choice discrimination tasks have not yet been performed. Here, we describe neural activity from such recordings in the auditory cortex of mice during a frequency discrimination task with delayed report, which, as we show, requires the auditory cortex. Stimulus-related information was widely distributed across layers but disappeared very quickly after stimulus offset. Choice selectivity emerged toward the end of the delay period-suggesting a top-down origin-but only in the deep layers. Early stimulus-selective and late choice-selective deep neural ensembles were correlated, suggesting that the choice-selective signal fed back to the auditory cortex is not just action specific but develops as a consequence of the sensory-motor contingency imposed by the task.
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Affiliation(s)
- Raphael Steinfeld
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal.
| | - André Tacão-Monteiro
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal
| | - Alfonso Renart
- Champalimaud Research, Champalimaud Foundation, Avenida Brasília, 1400-038 Lisbon, Portugal.
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15
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Finkel EA, Chang YT, Dasgupta R, Lubin EE, Xu D, Minamisawa G, Chang AJ, Cohen JY, O'Connor DH. Tactile processing in mouse cortex depends on action context. Cell Rep 2024; 43:113991. [PMID: 38573855 PMCID: PMC11097894 DOI: 10.1016/j.celrep.2024.113991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Revised: 12/08/2023] [Accepted: 03/07/2024] [Indexed: 04/06/2024] Open
Abstract
The brain receives constant tactile input, but only a subset guides ongoing behavior. Actions associated with tactile stimuli thus endow them with behavioral relevance. It remains unclear how the relevance of tactile stimuli affects processing in the somatosensory (S1) cortex. We developed a cross-modal selection task in which head-fixed mice switched between responding to tactile stimuli in the presence of visual distractors or to visual stimuli in the presence of tactile distractors using licking movements to the left or right side in different blocks of trials. S1 spiking encoded tactile stimuli, licking actions, and direction of licking in response to tactile but not visual stimuli. Bidirectional optogenetic manipulations showed that sensory-motor activity in S1 guided behavior when touch but not vision was relevant. Our results show that S1 activity and its impact on behavior depend on the actions associated with a tactile stimulus.
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Affiliation(s)
- Eric A Finkel
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Yi-Ting Chang
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Rajan Dasgupta
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Emily E Lubin
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Duo Xu
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Genki Minamisawa
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Anna J Chang
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Jeremiah Y Cohen
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Daniel H O'Connor
- Solomon H. Snyder Department of Neuroscience, Krieger Mind/Brain Institute, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA.
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16
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A Dehaqani A, Michelon F, Patella P, Petrucco L, Piasini E, Iurilli G. A mechanosensory feedback that uncouples external and self-generated sensory responses in the olfactory cortex. Cell Rep 2024; 43:114013. [PMID: 38551962 DOI: 10.1016/j.celrep.2024.114013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 12/20/2023] [Accepted: 03/13/2024] [Indexed: 04/28/2024] Open
Abstract
Sampling behaviors have sensory consequences that can hinder perceptual stability. In olfaction, sniffing affects early odor encoding, mimicking a sudden change in odor concentration. We examined how the inhalation speed affects the representation of odor concentration in the main olfactory cortex. Neurons combine the odor input with a global top-down signal preceding the sniff and a mechanosensory feedback generated by the air passage through the nose during inhalation. Still, the population representation of concentration is remarkably sniff invariant. This is because the mechanosensory and olfactory responses are uncorrelated within and across neurons. Thus, faster odor inhalation and an increase in concentration change the cortical activity pattern in distinct ways. This encoding strategy affords tolerance to potential concentration fluctuations caused by varying inhalation speeds. Since mechanosensory reafferences are widespread across sensory systems, the coding scheme described here may be a canonical strategy to mitigate the sensory ambiguities caused by movements.
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Affiliation(s)
- Alireza A Dehaqani
- Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy; CIMeC, University of Trento, 38068 Rovereto, Italy
| | - Filippo Michelon
- Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy; CIMeC, University of Trento, 38068 Rovereto, Italy
| | - Paola Patella
- Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy
| | - Luigi Petrucco
- Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy
| | - Eugenio Piasini
- International School for Advanced Studies (SISSA), Trieste, Italy
| | - Giuliano Iurilli
- Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy.
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17
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Hasnain MA, Birnbaum JE, Nunez JLU, Hartman EK, Chandrasekaran C, Economo MN. Separating cognitive and motor processes in the behaving mouse. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.08.23.554474. [PMID: 37662199 PMCID: PMC10473744 DOI: 10.1101/2023.08.23.554474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
The cognitive processes supporting complex animal behavior are closely associated with ubiquitous movements responsible for our posture, facial expressions, ability to actively sample our sensory environments, and other critical processes. These movements are strongly related to neural activity across much of the brain and are often highly correlated with ongoing cognitive processes, making it challenging to dissociate the neural dynamics that support cognitive processes from those supporting related movements. In such cases, a critical issue is whether cognitive processes are separable from related movements, or if they are driven by common neural mechanisms. Here, we demonstrate how the separability of cognitive and motor processes can be assessed, and, when separable, how the neural dynamics associated with each component can be isolated. We establish a novel two-context behavioral task in mice that involves multiple cognitive processes and show that commonly observed dynamics taken to support cognitive processes are strongly contaminated by movements. When cognitive and motor components are isolated using a novel approach for subspace decomposition, we find that they exhibit distinct dynamical trajectories. Further, properly accounting for movement revealed that largely separate populations of cells encode cognitive and motor variables, in contrast to the 'mixed selectivity' often reported. Accurately isolating the dynamics associated with particular cognitive and motor processes will be essential for developing conceptual and computational models of neural circuit function and evaluating the function of the cell types of which neural circuits are composed.
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Affiliation(s)
- Munib A. Hasnain
- Department of Biomedical Engineering, Boston University, Boston, MA
- Center for Neurophotonics, Boston University, Boston, MA
| | - Jaclyn E. Birnbaum
- Graduate Program for Neuroscience, Boston University, Boston, MA
- Center for Neurophotonics, Boston University, Boston, MA
| | | | - Emma K. Hartman
- Department of Biomedical Engineering, Boston University, Boston, MA
| | - Chandramouli Chandrasekaran
- Department of Psychological and Brain Sciences, Boston University, Boston, MA
- Department of Neurobiology & Anatomy, Boston University, Boston, MA
- Center for Systems Neuroscience, Boston University, Boston, MA
| | - Michael N. Economo
- Department of Biomedical Engineering, Boston University, Boston, MA
- Center for Neurophotonics, Boston University, Boston, MA
- Center for Systems Neuroscience, Boston University, Boston, MA
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18
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Davidson MJ, Verstraten FAJ, Alais D. Walking modulates visual detection performance according to stride cycle phase. Nat Commun 2024; 15:2027. [PMID: 38453900 PMCID: PMC10920920 DOI: 10.1038/s41467-024-45780-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 02/05/2024] [Indexed: 03/09/2024] Open
Abstract
Walking is among our most frequent and natural of voluntary behaviours, yet the consequences of locomotion upon perceptual and cognitive function remain largely unknown. Recent work has highlighted that although walking feels smooth and continuous, critical phases exist within each step for the successful coordination of perceptual and motor function. Here, we test whether these phasic demands impact upon visual perception, by assessing performance in a visual detection task during natural unencumbered walking. We finely sample visual performance over the stride cycle as participants walk along a smooth linear path at a comfortable speed in a wireless virtual reality environment. At the group-level, accuracy, reaction times, and response likelihood show strong oscillations, modulating at approximately 2 cycles per stride (~2 Hz) with a marked phase of optimal performance aligned with the swing phase of each step. At the participant level, Bayesian inference of population prevalence reveals highly prevalent oscillations in visual detection performance that cluster in two idiosyncratic frequency ranges (2 or 4 cycles per stride), with a strong phase alignment across participants.
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Affiliation(s)
| | | | - David Alais
- School of Psychology, The University of Sydney, Sydney, Australia
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19
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Hulsey D, Zumwalt K, Mazzucato L, McCormick DA, Jaramillo S. Decision-making dynamics are predicted by arousal and uninstructed movements. Cell Rep 2024; 43:113709. [PMID: 38280196 PMCID: PMC11016285 DOI: 10.1016/j.celrep.2024.113709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 10/05/2023] [Accepted: 01/10/2024] [Indexed: 01/29/2024] Open
Abstract
During sensory-guided behavior, an animal's decision-making dynamics unfold through sequences of distinct performance states, even while stimulus-reward contingencies remain static. Little is known about the factors that underlie these changes in task performance. We hypothesize that these decision-making dynamics can be predicted by externally observable measures, such as uninstructed movements and changes in arousal. Here, using computational modeling of visual and auditory task performance data from mice, we uncovered lawful relationships between transitions in strategic task performance states and an animal's arousal and uninstructed movements. Using hidden Markov models applied to behavioral choices during sensory discrimination tasks, we find that animals fluctuate between minutes-long optimal, sub-optimal, and disengaged performance states. Optimal state epochs are predicted by intermediate levels, and reduced variability, of pupil diameter and movement. Our results demonstrate that externally observable uninstructed behaviors can predict optimal performance states and suggest that mice regulate their arousal during optimal performance.
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Affiliation(s)
- Daniel Hulsey
- Institute of Neuroscience, University of Oregon, Eugene, OR 97405, USA
| | - Kevin Zumwalt
- Institute of Neuroscience, University of Oregon, Eugene, OR 97405, USA
| | - Luca Mazzucato
- Institute of Neuroscience, University of Oregon, Eugene, OR 97405, USA; Department of Biology, University of Oregon, Eugene, OR 97405, USA; Departments of Physics and Mathematics, University of Oregon, Eugene, OR 97405, USA.
| | - David A McCormick
- Institute of Neuroscience, University of Oregon, Eugene, OR 97405, USA; Department of Biology, University of Oregon, Eugene, OR 97405, USA.
| | - Santiago Jaramillo
- Institute of Neuroscience, University of Oregon, Eugene, OR 97405, USA; Department of Biology, University of Oregon, Eugene, OR 97405, USA.
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20
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Matsumoto A, Toyoshima Y, Zhang C, Isozaki A, Goda K, Iino Y. Neuronal sensorimotor integration guiding salt concentration navigation in Caenorhabditis elegans. Proc Natl Acad Sci U S A 2024; 121:e2310735121. [PMID: 38252838 PMCID: PMC10835141 DOI: 10.1073/pnas.2310735121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Accepted: 12/14/2023] [Indexed: 01/24/2024] Open
Abstract
Animals navigate their environment by manipulating their movements and adjusting their trajectory which requires a sophisticated integration of sensory data with their current motor status. Here, we utilize the nematode Caenorhabditis elegans to explore the neural mechanisms of processing the sensory and motor information for navigation. We developed a microfluidic device which allows animals to freely move their heads while receiving temporal NaCl stimuli. We found that C. elegans regulates neck bending direction in response to temporal NaCl concentration changes in a way which is consistent with a C. elegans' navigational strategy which regulates traveling direction toward preferred NaCl concentrations. Our analysis also revealed that the activity of a neck motor neuron is significantly correlated with neck bending and activated by the decrease in NaCl concentration in a phase-dependent manner. By combining the analysis of behavioral and neural response to NaCl stimuli and optogenetic perturbation experiments, we revealed that NaCl decrease during ventral bending activates the neck motor neuron which counteracts ipsilateral bending. Simulations further suggest that this phase-dependent response of neck motor neurons can facilitate curving toward preferred salt concentrations.
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Grants
- JP17H06113 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
- JP22H00416 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
- JP20K21805 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
- JP19H04980 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
- JPMJCR22N4 MEXT | JST | Core Research for Evolutional Science and Technology (CREST)
- JPMJPR1947 MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO)
- JP26830006 MEXT | Japan Society for the Promotion of Science (JSPS)
- JP18K14848 MEXT | Japan Society for the Promotion of Science (JSPS)
- JP22H04838 MEXT | Japan Society for the Promotion of Science (JSPS)
- JP17H05970 MEXT | Japan Society for the Promotion of Science (JSPS)
- 19H04928 MEXT | Japan Society for the Promotion of Science (JSPS)
- JPMXP09F19UT0122 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
- JPMXP09F20UT0123 Ministry of Education, Culture, Sports, Science and Technology (MEXT)
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Affiliation(s)
- Ayaka Matsumoto
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
| | - Yu Toyoshima
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
| | - Chenqi Zhang
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
| | - Akihiro Isozaki
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
- Department of Mechanical Engineering, College of Science and Engineering, Ritsumeikan University, Shiga525-8577, Japan
| | - Keisuke Goda
- Department of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
- Department of Bioengineering, University of California, Los Angeles, CA90095
- Institute of Technological Sciences, Wuhan University, Wuhan430072, China
| | - Yuichi Iino
- Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo113-0033, Japan
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21
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Chai Y, Qi K, Wu Y, Li D, Tan G, Guo Y, Chu J, Mu Y, Shen C, Wen Q. All-optical interrogation of brain-wide activity in freely swimming larval zebrafish. iScience 2024; 27:108385. [PMID: 38205255 PMCID: PMC10776927 DOI: 10.1016/j.isci.2023.108385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 09/22/2023] [Accepted: 10/30/2023] [Indexed: 01/12/2024] Open
Abstract
We introduce an all-optical technique that enables volumetric imaging of brain-wide calcium activity and targeted optogenetic stimulation of specific brain regions in unrestrained larval zebrafish. The system consists of three main components: a 3D tracking module, a dual-color fluorescence imaging module, and a real-time activity manipulation module. Our approach uses a sensitive genetically encoded calcium indicator in combination with a long Stokes shift red fluorescence protein as a reference channel, allowing the extraction of Ca2+ activity from signals contaminated by motion artifacts. The method also incorporates rapid 3D image reconstruction and registration, facilitating real-time selective optogenetic stimulation of different regions of the brain. By demonstrating that selective light activation of the midbrain regions in larval zebrafish could reliably trigger biased turning behavior and changes of brain-wide neural activity, we present a valuable tool for investigating the causal relationship between distributed neural circuit dynamics and naturalistic behavior.
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Affiliation(s)
- Yuming Chai
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Kexin Qi
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Yubin Wu
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Daguang Li
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Guodong Tan
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Yuqi Guo
- Guangdong Provincial Key Laboratory of Biomedical Optical Imaging Technology and Center for Biomedical Optics and Molecular Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Jun Chu
- Guangdong Provincial Key Laboratory of Biomedical Optical Imaging Technology and Center for Biomedical Optics and Molecular Imaging, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Yu Mu
- Institute of Neuroscience, State Key Laboratory of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai, China
| | - Chen Shen
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
| | - Quan Wen
- Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
- Hefei National Research Center for Physical Sciences at the Microscale, Center for Integrative Imaging, University of Science and Technology of China, Hefei, China
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22
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Mai J, Gargiullo R, Zheng M, Esho V, Hussein OE, Pollay E, Bowe C, Williamson LM, McElroy AF, Goolsby WN, Brooks KA, Rodgers CC. Sound-seeking before and after hearing loss in mice. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.08.574475. [PMID: 38260458 PMCID: PMC10802496 DOI: 10.1101/2024.01.08.574475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2024]
Abstract
How we move our bodies affects how we perceive sound. For instance, we can explore an environment to seek out the source of a sound and we can use head movements to compensate for hearing loss. How we do this is not well understood because many auditory experiments are designed to limit head and body movements. To study the role of movement in hearing, we developed a behavioral task called sound-seeking that rewarded mice for tracking down an ongoing sound source. Over the course of learning, mice more efficiently navigated to the sound. We then asked how auditory behavior was affected by hearing loss induced by surgical removal of the malleus from the middle ear. An innate behavior, the auditory startle response, was abolished by bilateral hearing loss and unaffected by unilateral hearing loss. Similarly, performance on the sound-seeking task drastically declined after bilateral hearing loss and did not recover. In striking contrast, mice with unilateral hearing loss were only transiently impaired on sound-seeking; over a recovery period of about a week, they regained high levels of performance, increasingly reliant on a different spatial sampling strategy. Thus, even in the face of permanent unilateral damage to the peripheral auditory system, mice recover their ability to perform a naturalistic sound-seeking task. This paradigm provides an opportunity to examine how body movement enables better hearing and resilient adaptation to sensory deprivation.
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Affiliation(s)
- Jessica Mai
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Rowan Gargiullo
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Megan Zheng
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Valentina Esho
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Osama E Hussein
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Eliana Pollay
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
| | - Cedric Bowe
- Neuroscience Graduate Program, Emory University, Atlanta GA 30322
| | | | | | - William N Goolsby
- Department of Cell Biology, Emory University School of Medicine, Atlanta GA 30322
| | - Kaitlyn A Brooks
- Department of Otolaryngology - Head and Neck Surgery, Emory University School of Medicine, Atlanta GA 30308
| | - Chris C Rodgers
- Department of Neurosurgery, Emory University School of Medicine, Atlanta GA 30322
- Department of Cell Biology, Emory University School of Medicine, Atlanta GA 30322
- Department of Biomedical Engineering, Georgia Tech and Emory University School of Medicine, Atlanta GA 30322
- Department of Biology, Emory College of Arts and Sciences, Atlanta GA 30322
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23
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Barreiro AK, Fontenele AJ, Ly C, Raju PC, Gautam SH, Shew WL. Sensory input to cortex encoded on low-dimensional periphery-correlated subspaces. PNAS NEXUS 2024; 3:pgae010. [PMID: 38250515 PMCID: PMC10798852 DOI: 10.1093/pnasnexus/pgae010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 12/29/2023] [Indexed: 01/23/2024]
Abstract
As information about the world is conveyed from the sensory periphery to central neural circuits, it mixes with complex ongoing cortical activity. How do neural populations keep track of sensory signals, separating them from noisy ongoing activity? Here, we show that sensory signals are encoded more reliably in certain low-dimensional subspaces. These coding subspaces are defined by correlations between neural activity in the primary sensory cortex and upstream sensory brain regions; the most correlated dimensions were best for decoding. We analytically show that these correlation-based coding subspaces improve, reaching optimal limits (without an ideal observer), as noise correlations between cortex and upstream regions are reduced. We show that this principle generalizes across diverse sensory stimuli in the olfactory system and the visual system of awake mice. Our results demonstrate an algorithm the cortex may use to multiplex different functions, processing sensory input in low-dimensional subspaces separate from other ongoing functions.
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Affiliation(s)
- Andrea K Barreiro
- Department of Mathematics, Southern Methodist University, Dallas, TX 75275, USA
| | - Antonio J Fontenele
- Department of Physics, UA Integrative Systems Neuroscience, University of Arkansas, Fayetteville, AR 72701, USA
| | - Cheng Ly
- Department of Statistical Sciences and Operations Research, Virginia Commonwealth University, Richmond, VA 23284, USA
| | - Prashant C Raju
- Department of Physics, UA Integrative Systems Neuroscience, University of Arkansas, Fayetteville, AR 72701, USA
| | - Shree Hari Gautam
- Department of Physics, UA Integrative Systems Neuroscience, University of Arkansas, Fayetteville, AR 72701, USA
| | - Woodrow L Shew
- Department of Physics, UA Integrative Systems Neuroscience, University of Arkansas, Fayetteville, AR 72701, USA
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24
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Xu A, Hou Y, Niell CM, Beyeler M. Multimodal Deep Learning Model Unveils Behavioral Dynamics of V1 Activity in Freely Moving Mice. ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 2023; 36:15341-15357. [PMID: 39005944 PMCID: PMC11242920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Despite their immense success as a model of macaque visual cortex, deep convolutional neural networks (CNNs) have struggled to predict activity in visual cortex of the mouse, which is thought to be strongly dependent on the animal's behavioral state. Furthermore, most computational models focus on predicting neural responses to static images presented under head fixation, which are dramatically different from the dynamic, continuous visual stimuli that arise during movement in the real world. Consequently, it is still unknown how natural visual input and different behavioral variables may integrate over time to generate responses in primary visual cortex (V1). To address this, we introduce a multimodal recurrent neural network that integrates gaze-contingent visual input with behavioral and temporal dynamics to explain V1 activity in freely moving mice. We show that the model achieves state-of-the-art predictions of V1 activity during free exploration and demonstrate the importance of each component in an extensive ablation study. Analyzing our model using maximally activating stimuli and saliency maps, we reveal new insights into cortical function, including the prevalence of mixed selectivity for behavioral variables in mouse V1. In summary, our model offers a comprehensive deep-learning framework for exploring the computational principles underlying V1 neurons in freely-moving animals engaged in natural behavior.
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Affiliation(s)
- Aiwen Xu
- Department of Computer Science University of California, Santa Barbara Santa Barbara, CA 93117
| | - Yuchen Hou
- Department of Computer Science University of California, Santa Barbara Santa Barbara, CA 93117
| | - Cristopher M Niell
- Department of Biology, Institute of Neuroscience University of Oregon Eugene, OR 97403
| | - Michael Beyeler
- Department of Computer Science Department of Psychological & Brain Sciences University of California, Santa Barbara Santa Barbara, CA 93117
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25
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Parker PRL, Martins DM, Leonard ESP, Casey NM, Sharp SL, Abe ETT, Smear MC, Yates JL, Mitchell JF, Niell CM. A dynamic sequence of visual processing initiated by gaze shifts. Nat Neurosci 2023; 26:2192-2202. [PMID: 37996524 PMCID: PMC11270614 DOI: 10.1038/s41593-023-01481-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 10/04/2023] [Indexed: 11/25/2023]
Abstract
Animals move their head and eyes as they explore the visual scene. Neural correlates of these movements have been found in rodent primary visual cortex (V1), but their sources and computational roles are unclear. We addressed this by combining head and eye movement measurements with neural recordings in freely moving mice. V1 neurons responded primarily to gaze shifts, where head movements are accompanied by saccadic eye movements, rather than to head movements where compensatory eye movements stabilize gaze. A variety of activity patterns followed gaze shifts and together these formed a temporal sequence that was absent in darkness. Gaze-shift responses resembled those evoked by sequentially flashed stimuli, suggesting a large component corresponds to onset of new visual input. Notably, neurons responded in a sequence that matches their spatial frequency bias, consistent with coarse-to-fine processing. Recordings in freely gazing marmosets revealed a similar sequence following saccades, also aligned to spatial frequency preference. Our results demonstrate that active vision in both mice and marmosets consists of a dynamic temporal sequence of neural activity associated with visual sampling.
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Affiliation(s)
- Philip R L Parker
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
- Behavioral and Systems Neuroscience, Department of Psychology, Rutgers University, New Brunswick, NJ, USA
| | - Dylan M Martins
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Emmalyn S P Leonard
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Nathan M Casey
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Shelby L Sharp
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Elliott T T Abe
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Matthew C Smear
- Institute of Neuroscience and Department of Psychology, University of Oregon, Eugene, OR, USA
| | - Jacob L Yates
- Department of Biology and Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD, USA
- Herbert Wertheim School of Optometry and Vision Science, University of California, Berkeley, CA, USA
| | - Jude F Mitchell
- Department of Brain and Cognitive Sciences and Center for Visual Sciences, University of Rochester, Rochester, NY, USA.
| | - Cristopher M Niell
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA.
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26
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Talluri BC, Kang I, Lazere A, Quinn KR, Kaliss N, Yates JL, Butts DA, Nienborg H. Activity in primate visual cortex is minimally driven by spontaneous movements. Nat Neurosci 2023; 26:1953-1959. [PMID: 37828227 PMCID: PMC10620084 DOI: 10.1038/s41593-023-01459-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 09/08/2023] [Indexed: 10/14/2023]
Abstract
Organisms process sensory information in the context of their own moving bodies, an idea referred to as embodiment. This idea is important for developmental neuroscience, robotics and systems neuroscience. The mechanisms supporting embodiment are unknown, but a manifestation could be the observation in mice of brain-wide neuromodulation, including in the primary visual cortex, driven by task-irrelevant spontaneous body movements. We tested this hypothesis in macaque monkeys (Macaca mulatta), a primate model for human vision, by simultaneously recording visual cortex activity and facial and body movements. We also sought a direct comparison using an analogous approach to those used in mouse studies. Here we found that activity in the primate visual cortex (V1, V2 and V3/V3A) was associated with the animals' own movements, but this modulation was largely explained by the impact of the movements on the retinal image, that is, by changes in visual input. These results indicate that visual cortex in primates is minimally driven by spontaneous movements and may reflect species-specific sensorimotor strategies.
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Affiliation(s)
- Bharath Chandra Talluri
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD, USA
| | - Incheol Kang
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD, USA
| | - Adam Lazere
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD, USA
| | - Katrina R Quinn
- Center for Integrative Neuroscience, University of Tübingen, Tübingen, Germany
| | - Nicholas Kaliss
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD, USA
| | - Jacob L Yates
- Herbert Wertheim School of Optometry & Vision Science, University of California, Berkeley, Berkeley, CA, USA
- Department of Biology and Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD, USA
| | - Daniel A Butts
- Department of Biology and Program in Neuroscience and Cognitive Science, University of Maryland, College Park, MD, USA
| | - Hendrikje Nienborg
- Laboratory of Sensorimotor Research, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
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27
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Quass GL, Rogalla MM, Ford AN, Apostolides PF. Mixed representations of sound and action in the auditory midbrain. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.19.558449. [PMID: 37786676 PMCID: PMC10541616 DOI: 10.1101/2023.09.19.558449] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
Linking sensory input and its consequences is a fundamental brain operation. Accordingly, neural activity of neo-cortical and limbic systems often reflects dynamic combinations of sensory and behaviorally relevant variables, and these "mixed representations" are suggested to be important for perception, learning, and plasticity. However, the extent to which such integrative computations might occur in brain regions upstream of the forebrain is less clear. Here, we conduct cellular-resolution 2-photon Ca2+ imaging in the superficial "shell" layers of the inferior colliculus (IC), as head-fixed mice of either sex perform a reward-based psychometric auditory task. We find that the activity of individual shell IC neurons jointly reflects auditory cues and mice's actions, such that trajectories of neural population activity diverge depending on mice's behavioral choice. Consequently, simple classifier models trained on shell IC neuron activity can predict trial-by-trial outcomes, even when training data are restricted to neural activity occurring prior to mice's instrumental actions. Thus in behaving animals, auditory midbrain neurons transmit a population code that reflects a joint representation of sound and action.
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Affiliation(s)
- GL Quass
- Kresge Hearing Research Institute, Department of Otolaryngology – Head & Neck Surgery, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - MM Rogalla
- Kresge Hearing Research Institute, Department of Otolaryngology – Head & Neck Surgery, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - AN Ford
- Kresge Hearing Research Institute, Department of Otolaryngology – Head & Neck Surgery, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
| | - PF Apostolides
- Kresge Hearing Research Institute, Department of Otolaryngology – Head & Neck Surgery, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
- Department of Molecular and Integrative Physiology, University of Michigan Medical School, Ann Arbor, Michigan 48109, United States
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28
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Davidson MJ, Keys RT, Szekely B, MacNeilage P, Verstraten F, Alais D. Continuous peripersonal tracking accuracy is limited by the speed and phase of locomotion. Sci Rep 2023; 13:14864. [PMID: 37684285 PMCID: PMC10491677 DOI: 10.1038/s41598-023-40655-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 08/16/2023] [Indexed: 09/10/2023] Open
Abstract
Recent evidence suggests that perceptual and cognitive functions are codetermined by rhythmic bodily states. Prior investigations have focused on the cardiac and respiratory rhythms, both of which are also known to synchronise with locomotion-arguably our most common and natural of voluntary behaviours. Compared to the cardiorespiratory rhythms, walking is easier to voluntarily control, enabling a test of how natural and voluntary rhythmic action may affect sensory function. Here we show that the speed and phase of human locomotion constrains sensorimotor performance. We used a continuous visuo-motor tracking task in a wireless, body-tracking virtual environment, and found that the accuracy and reaction time of continuous reaching movements were decreased at slower walking speeds, and rhythmically modulated according to the phases of the step-cycle. Decreased accuracy when walking at slow speeds suggests an advantage for interlimb coordination at normal walking speeds, in contrast to previous research on dual-task walking and reach-to-grasp movements. Phasic modulations of reach precision within the step-cycle also suggest that the upper limbs are affected by the ballistic demands of motor-preparation during natural locomotion. Together these results show that the natural phases of human locomotion impose constraints on sensorimotor function and demonstrate the value of examining dynamic and natural behaviour in contrast to the traditional and static methods of psychological science.
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Affiliation(s)
| | | | - Brian Szekely
- Department of Psychology, University of Nevada, Reno, USA
| | | | - Frans Verstraten
- School of Psychology, The University of Sydney, Sydney, Australia
| | - David Alais
- School of Psychology, The University of Sydney, Sydney, Australia
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29
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Vivaldo CA, Lee J, Shorkey M, Keerthy A, Rothschild G. Auditory cortex ensembles jointly encode sound and locomotion speed to support sound perception during movement. PLoS Biol 2023; 21:e3002277. [PMID: 37651461 PMCID: PMC10499203 DOI: 10.1371/journal.pbio.3002277] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 09/13/2023] [Accepted: 07/26/2023] [Indexed: 09/02/2023] Open
Abstract
The ability to process and act upon incoming sounds during locomotion is critical for survival and adaptive behavior. Despite the established role that the auditory cortex (AC) plays in behavior- and context-dependent sound processing, previous studies have found that auditory cortical activity is on average suppressed during locomotion as compared to immobility. While suppression of auditory cortical responses to self-generated sounds results from corollary discharge, which weakens responses to predictable sounds, the functional role of weaker responses to unpredictable external sounds during locomotion remains unclear. In particular, whether suppression of external sound-evoked responses during locomotion reflects reduced involvement of the AC in sound processing or whether it results from masking by an alternative neural computation in this state remains unresolved. Here, we tested the hypothesis that rather than simple inhibition, reduced sound-evoked responses during locomotion reflect a tradeoff with the emergence of explicit and reliable coding of locomotion velocity. To test this hypothesis, we first used neural inactivation in behaving mice and found that the AC plays a critical role in sound-guided behavior during locomotion. To investigate the nature of this processing, we used two-photon calcium imaging of local excitatory auditory cortical neural populations in awake mice. We found that locomotion had diverse influences on activity of different neurons, with a net suppression of baseline-subtracted sound-evoked responses and neural stimulus detection, consistent with previous studies. Importantly, we found that the net inhibitory effect of locomotion on baseline-subtracted sound-evoked responses was strongly shaped by elevated ongoing activity that compressed the response dynamic range, and that rather than reflecting enhanced "noise," this ongoing activity reliably encoded the animal's locomotion speed. Decoding analyses revealed that locomotion speed and sound are robustly co-encoded by auditory cortical ensemble activity. Finally, we found consistent patterns of joint coding of sound and locomotion speed in electrophysiologically recorded activity in freely moving rats. Together, our data suggest that rather than being suppressed by locomotion, auditory cortical ensembles explicitly encode it alongside sound information to support sound perception during locomotion.
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Affiliation(s)
- Carlos Arturo Vivaldo
- Department of Psychology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Joonyeup Lee
- Department of Psychology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - MaryClaire Shorkey
- Department of Psychology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Ajay Keerthy
- Department of Psychology, University of Michigan, Ann Arbor, Michigan, United States of America
| | - Gideon Rothschild
- Department of Psychology, University of Michigan, Ann Arbor, Michigan, United States of America
- Kresge Hearing Research Institute and Department of Otolaryngology—Head and Neck Surgery, University of Michigan, Ann Arbor, Michigan, United States of America
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30
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Buzsáki G, Tingley D. Cognition from the Body-Brain Partnership: Exaptation of Memory. Annu Rev Neurosci 2023; 46:191-210. [PMID: 36917822 PMCID: PMC10793243 DOI: 10.1146/annurev-neuro-101222-110632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
Abstract
Examination of cognition has historically been approached from language and introspection. However, human language-dependent definitions ignore the evolutionary roots of brain mechanisms and constrain their study in experimental animals. We promote an alternative view, namely that cognition, including memory, can be explained by exaptation and expansion of the circuits and algorithms serving bodily functions. Regulation and protection of metabolic and energetic processes require time-evolving brain computations enabling the organism to prepare for altered future states. Exaptation of such circuits was likely exploited for exploration of the organism's niche. We illustrate that exploration gives rise to a cognitive map, and in turn, environment-disengaged computation allows for mental travel into the past (memory) and the future (planning). Such brain-body interactions not only occur during waking but also persist during sleep. These exaptation steps are illustrated by the dual, endocrine-homeostatic and memory, contributions of the hippocampal system, particularly during hippocampal sharp-wave ripples.
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Affiliation(s)
- György Buzsáki
- Neuroscience Institute and Department of Neurology, NYU Grossman School of Medicine, New York University, New York, NY, USA;
- Center for Neural Science, New York University, New York, NY, USA
| | - David Tingley
- Neuroscience Institute and Department of Neurology, NYU Grossman School of Medicine, New York University, New York, NY, USA;
- Division of Endocrinology, Diabetes and Metabolism, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA
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31
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Mimica B, Tombaz T, Battistin C, Fuglstad JG, Dunn BA, Whitlock JR. Behavioral decomposition reveals rich encoding structure employed across neocortex in rats. Nat Commun 2023; 14:3947. [PMID: 37402724 PMCID: PMC10319800 DOI: 10.1038/s41467-023-39520-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 06/16/2023] [Indexed: 07/06/2023] Open
Abstract
The cortical population code is pervaded by activity patterns evoked by movement, but it remains largely unknown how such signals relate to natural behavior or how they might support processing in sensory cortices where they have been observed. To address this we compared high-density neural recordings across four cortical regions (visual, auditory, somatosensory, motor) in relation to sensory modulation, posture, movement, and ethograms of freely foraging male rats. Momentary actions, such as rearing or turning, were represented ubiquitously and could be decoded from all sampled structures. However, more elementary and continuous features, such as pose and movement, followed region-specific organization, with neurons in visual and auditory cortices preferentially encoding mutually distinct head-orienting features in world-referenced coordinates, and somatosensory and motor cortices principally encoding the trunk and head in egocentric coordinates. The tuning properties of synaptically coupled cells also exhibited connection patterns suggestive of area-specific uses of pose and movement signals, particularly in visual and auditory regions. Together, our results indicate that ongoing behavior is encoded at multiple levels throughout the dorsal cortex, and that low-level features are differentially utilized by different regions to serve locally relevant computations.
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Affiliation(s)
- Bartul Mimica
- Princeton Neuroscience Institute, Princeton University, Washington Road, Princeton, 100190, NJ, USA.
| | - Tuçe Tombaz
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Olav Kyrres Gate 9, 7030, Trondheim, Norway
| | - Claudia Battistin
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Olav Kyrres Gate 9, 7030, Trondheim, Norway
- Department of Mathematical Sciences, Norwegian University of Science and Technology, 7491, Trondheim, Norway
| | - Jingyi Guo Fuglstad
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Olav Kyrres Gate 9, 7030, Trondheim, Norway
| | - Benjamin A Dunn
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Olav Kyrres Gate 9, 7030, Trondheim, Norway
- Department of Mathematical Sciences, Norwegian University of Science and Technology, 7491, Trondheim, Norway
| | - Jonathan R Whitlock
- Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Olav Kyrres Gate 9, 7030, Trondheim, Norway.
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32
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Saleem AB, Busse L. Interactions between rodent visual and spatial systems during navigation. Nat Rev Neurosci 2023:10.1038/s41583-023-00716-7. [PMID: 37380885 DOI: 10.1038/s41583-023-00716-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/31/2023] [Indexed: 06/30/2023]
Abstract
Many behaviours that are critical for animals to survive and thrive rely on spatial navigation. Spatial navigation, in turn, relies on internal representations about one's spatial location, one's orientation or heading direction and the distance to objects in the environment. Although the importance of vision in guiding such internal representations has long been recognized, emerging evidence suggests that spatial signals can also modulate neural responses in the central visual pathway. Here, we review the bidirectional influences between visual and navigational signals in the rodent brain. Specifically, we discuss reciprocal interactions between vision and the internal representations of spatial position, explore the effects of vision on representations of an animal's heading direction and vice versa, and examine how the visual and navigational systems work together to assess the relative distances of objects and other features. Throughout, we consider how technological advances and novel ethological paradigms that probe rodent visuo-spatial behaviours allow us to advance our understanding of how brain areas of the central visual pathway and the spatial systems interact and enable complex behaviours.
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Affiliation(s)
- Aman B Saleem
- UCL Institute of Behavioural Neuroscience, Department of Experimental Psychology, University College London, London, UK.
| | - Laura Busse
- Division of Neuroscience, Faculty of Biology, LMU Munich, Munich, Germany.
- Bernstein Centre for Computational Neuroscience Munich, Munich, Germany.
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33
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Xu A, Hou Y, Niell CM, Beyeler M. Multimodal Deep Learning Model Unveils Behavioral Dynamics of V1 Activity in Freely Moving Mice. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.05.30.542912. [PMID: 37398256 PMCID: PMC10312557 DOI: 10.1101/2023.05.30.542912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/04/2023]
Abstract
Despite their immense success as a model of macaque visual cortex, deep convolutional neural networks (CNNs) have struggled to predict activity in visual cortex of the mouse, which is thought to be strongly dependent on the animal's behavioral state. Furthermore, most computational models focus on predicting neural responses to static images presented under head fixation, which are dramatically different from the dynamic, continuous visual stimuli that arise during movement in the real world. Consequently, it is still unknown how natural visual input and different behavioral variables may integrate over time to generate responses in primary visual cortex (V1). To address this, we introduce a multimodal recurrent neural network that integrates gaze-contingent visual input with behavioral and temporal dynamics to explain V1 activity in freely moving mice. We show that the model achieves state-of-the-art predictions of V1 activity during free exploration and demonstrate the importance of each component in an extensive ablation study. Analyzing our model using maximally activating stimuli and saliency maps, we reveal new insights into cortical function, including the prevalence of mixed selectivity for behavioral variables in mouse V1. In summary, our model offers a comprehensive deep-learning framework for exploring the computational principles underlying V1 neurons in freely-moving animals engaged in natural behavior.
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Affiliation(s)
- Aiwen Xu
- Department of Computer Science University of California, Santa Barbara Santa Barbara, CA 93117
| | - Yuchen Hou
- Department of Computer Science University of California, Santa Barbara Santa Barbara, CA 93117
| | - Cristopher M Niell
- Department of Biology, Institute of Neuroscience University of Oregon Eugene, OR 97403
| | - Michael Beyeler
- Department of Computer Science, Department of Psychological and Brain Sciences University of California, Santa Barbara Santa Barbara, CA 93117
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34
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Weiser SC, Mullen BR, Ascencio D, Ackman JB. Data-driven segmentation of cortical calcium dynamics. PLoS Comput Biol 2023; 19:e1011085. [PMID: 37126531 PMCID: PMC10174627 DOI: 10.1371/journal.pcbi.1011085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 05/11/2023] [Accepted: 04/09/2023] [Indexed: 05/02/2023] Open
Abstract
Demixing signals in transcranial videos of neuronal calcium flux across the cerebral hemispheres is a key step before mapping features of cortical organization. Here we demonstrate that independent component analysis can optimally recover neural signal content in widefield recordings of neuronal cortical calcium dynamics captured at a minimum sampling rate of 1.5×106 pixels per one-hundred millisecond frame for seventeen minutes with a magnification ratio of 1:1. We show that a set of spatial and temporal metrics obtained from the components can be used to build a random forest classifier, which separates neural activity and artifact components automatically at human performance. Using this data, we establish functional segmentation of the mouse cortex to provide a map of ~115 domains per hemisphere, in which extracted time courses maximally represent the underlying signal in each recording. Domain maps revealed substantial regional motifs, with higher order cortical regions presenting large, eccentric domains compared with smaller, more circular ones in primary sensory areas. This workflow of data-driven video decomposition and machine classification of signal sources can greatly enhance high quality mapping of complex cerebral dynamics.
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Affiliation(s)
- Sydney C. Weiser
- Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
| | - Brian R. Mullen
- Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
| | - Desiderio Ascencio
- Department of Psychology, University of California Santa Cruz, Santa Cruz, California, United States of America
| | - James B. Ackman
- Department of Molecular, Cell, and Developmental Biology, University of California Santa Cruz, Santa Cruz, California, United States of America
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35
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Aimon S, Cheng KY, Gjorgjieva J, Grunwald Kadow IC. Global change in brain state during spontaneous and forced walk in Drosophila is composed of combined activity patterns of different neuron classes. eLife 2023; 12:e85202. [PMID: 37067152 PMCID: PMC10168698 DOI: 10.7554/elife.85202] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Accepted: 04/13/2023] [Indexed: 04/18/2023] Open
Abstract
Movement-correlated brain activity has been found across species and brain regions. Here, we used fast whole brain lightfield imaging in adult Drosophila to investigate the relationship between walk and brain-wide neuronal activity. We observed a global change in activity that tightly correlated with spontaneous bouts of walk. While imaging specific sets of excitatory, inhibitory, and neuromodulatory neurons highlighted their joint contribution, spatial heterogeneity in walk- and turning-induced activity allowed parsing unique responses from subregions and sometimes individual candidate neurons. For example, previously uncharacterized serotonergic neurons were inhibited during walk. While activity onset in some areas preceded walk onset exclusively in spontaneously walking animals, spontaneous and forced walk elicited similar activity in most brain regions. These data suggest a major contribution of walk and walk-related sensory or proprioceptive information to global activity of all major neuronal classes.
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Affiliation(s)
- Sophie Aimon
- School of Life Sciences, Technical University of MunichFreisingGermany
| | - Karen Y Cheng
- School of Life Sciences, Technical University of MunichFreisingGermany
- University of Bonn, Medical Faculty (UKB), Institute of Physiology IIBonnGermany
| | - Julijana Gjorgjieva
- School of Life Sciences, Technical University of MunichFreisingGermany
- Max Planck Institute for Brain Research, Computation in Neural CircuitsFrankfurtGermany
| | - Ilona C Grunwald Kadow
- School of Life Sciences, Technical University of MunichFreisingGermany
- University of Bonn, Medical Faculty (UKB), Institute of Physiology IIBonnGermany
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36
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Stults-Kolehmainen MA. Humans have a basic physical and psychological need to move the body: Physical activity as a primary drive. Front Psychol 2023; 14:1134049. [PMID: 37113126 PMCID: PMC10128862 DOI: 10.3389/fpsyg.2023.1134049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 03/13/2023] [Indexed: 04/29/2023] Open
Abstract
Physical activity, while less necessary for survival in modern times, is still essential for thriving in life, and low levels of movement are related to numerous physical and mental health problems. However, we poorly understand why people move on a day-to-day basis and how to promote greater energy expenditure. Recently, there has been a turn to understand automatic processes with close examination of older theories of behavior. This has co-occurred with new developments in the study of non-exercise activity thermogenesis (NEAT). In this narrative review, it is hypothesized that psycho-physiological drive is important to understand movement in general and NEAT, specifically. Drive, in short, is a motivation state, characterized by arousal and felt tension, energizing the organism to acquire a basic need. Movement is a biological necessity, like food, water, and sleep, but varies across the lifespan and having the greatest impact before adolescence. Movement meets various criteria for a primary drive: (a) deprivation of it produces feelings of tension, such as an urge or craving, known as affectively-charged motivation states, and particularly the feelings of being antsy, restless, hyper or cooped up, (b) provision of the need quickly reduces tension - one can be satiated, and may even over-consume, (c) it can be provoked by qualities of the environment, (d) it is under homeostatic control, (e) there is an appetite (i.e., appetence) for movement but also aversion, and (f) it has a developmental time course. Evidence for drive has mainly come from children and populations with hyperkinetic disorders, such as those with anorexia nervosa, restless legs syndrome, and akathisia. It is also stimulated in conditions of deprivation, such as bed rest, quarantine, long flights, and physical restraint. It seems to be lacking in the hypokinetic disorders, such as depression and Parkinson's. Thus, drive is associated with displeasure and negative reinforcement, subsuming it within the theory of hedonic drive, but it may fit better within new paradigms, such as the WANT model (Wants and Aversions for Neuromuscular Tasks). Recently developed measurement tools, such as the CRAVE scale, may permit the earnest investigation of movement drive, satiation, and motivation states in humans.
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Affiliation(s)
- Matthew A. Stults-Kolehmainen
- Division of Digestive Health, Yale New Haven Hospital, New Haven, CT, United States
- Department of Biobehavioral Sciences, Teachers College – Columbia University, New York, NY, United States
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37
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West SL, Gerhart ML, Ebner TJ. Wide-field calcium imaging of cortical activation and functional connectivity in externally- and internally-driven locomotion. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.04.10.536261. [PMID: 37090567 PMCID: PMC10120686 DOI: 10.1101/2023.04.10.536261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
Abstract
The neural dynamics underlying self-initiated versus sensory driven movements is central to understanding volitional action. Upstream motor cortices are associated with the generation of internally-driven movements over externally-driven. Here we directly compare cortical dynamics during internally- versus externally-driven locomotion using wide-field Ca2+ imaging. We find that secondary motor cortex (M2) plays a larger role in internally-driven spontaneous locomotion transitions, with increased M2 functional connectivity during starting and stopping than in the externally-driven, motorized treadmill locomotion. This is not the case in steady-state walk. In addition, motorized treadmill and spontaneous locomotion are characterized by markedly different patterns of cortical activation and functional connectivity at the different behavior periods. Furthermore, the patterns of fluorescence activation and connectivity are uncorrelated. These experiments reveal widespread and striking differences in the cortical control of internally- and externally-driven locomotion, with M2 playing a major role in the preparation and execution of the self-initiated state.
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Affiliation(s)
- Sarah L. West
- Department of Neuroscience, University of Minnesota, Minneapolis, MN, USA
- Graduate Program in Neuroscience, University of Minnesota, Minneapolis, MN, USA
| | - Morgan L. Gerhart
- Department of Neuroscience, University of Minnesota, Minneapolis, MN, USA
| | - Timothy J. Ebner
- Department of Neuroscience, University of Minnesota, Minneapolis, MN, USA
- Graduate Program in Neuroscience, University of Minnesota, Minneapolis, MN, USA
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38
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Hulsey D, Zumwalt K, Mazzucato L, McCormick DA, Jaramillo S. Decision-making dynamics are predicted by arousal and uninstructed movements. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.02.530651. [PMID: 37034793 PMCID: PMC10081205 DOI: 10.1101/2023.03.02.530651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
During sensory-guided behavior, an animal's decision-making dynamics unfold through sequences of distinct performance states, even while stimulus-reward contingencies remain static. Little is known about the factors that underlie these changes in task performance. We hypothesize that these decision-making dynamics can be predicted by externally observable measures, such as uninstructed movements and changes in arousal. Here, combining behavioral experiments in mice with computational modeling, we uncovered lawful relationships between transitions in strategic task performance states and an animal's arousal and uninstructed movements. Using hidden Markov models applied to behavioral choices during sensory discrimination tasks, we found that animals fluctuate between minutes-long optimal, sub-optimal and disengaged performance states. Optimal state epochs were predicted by intermediate levels, and reduced variability, of pupil diameter, along with reduced variability in face movements and locomotion. Our results demonstrate that externally observable uninstructed behaviors can predict optimal performance states, and suggest mice regulate their arousal during optimal performance.
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Affiliation(s)
- Daniel Hulsey
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
| | - Kevin Zumwalt
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
| | - Luca Mazzucato
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
- Department of Biology, University of Oregon, Eugene, OR, USA
- Departments of Physics and Mathematics, University of Oregon, Eugene, OR, USA
| | - David A. McCormick
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
- Department of Biology, University of Oregon, Eugene, OR, USA
| | - Santiago Jaramillo
- Institute of Neuroscience, University of Oregon, Eugene, OR, USA
- Department of Biology, University of Oregon, Eugene, OR, USA
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Horrocks EAB, Mareschal I, Saleem AB. Walking humans and running mice: perception and neural encoding of optic flow during self-motion. Philos Trans R Soc Lond B Biol Sci 2023; 378:20210450. [PMID: 36511417 PMCID: PMC9745880 DOI: 10.1098/rstb.2021.0450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 08/30/2022] [Indexed: 12/15/2022] Open
Abstract
Locomotion produces full-field optic flow that often dominates the visual motion inputs to an observer. The perception of optic flow is in turn important for animals to guide their heading and interact with moving objects. Understanding how locomotion influences optic flow processing and perception is therefore essential to understand how animals successfully interact with their environment. Here, we review research investigating how perception and neural encoding of optic flow are altered during self-motion, focusing on locomotion. Self-motion has been found to influence estimation and sensitivity for optic flow speed and direction. Nonvisual self-motion signals also increase compensation for self-driven optic flow when parsing the visual motion of moving objects. The integration of visual and nonvisual self-motion signals largely follows principles of Bayesian inference and can improve the precision and accuracy of self-motion perception. The calibration of visual and nonvisual self-motion signals is dynamic, reflecting the changing visuomotor contingencies across different environmental contexts. Throughout this review, we consider experimental research using humans, non-human primates and mice. We highlight experimental challenges and opportunities afforded by each of these species and draw parallels between experimental findings. These findings reveal a profound influence of locomotion on optic flow processing and perception across species. This article is part of a discussion meeting issue 'New approaches to 3D vision'.
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Affiliation(s)
- Edward A. B. Horrocks
- Institute of Behavioural Neuroscience, Department of Experimental Psychology, University College London, London WC1H 0AP, UK
| | - Isabelle Mareschal
- School of Biological and Behavioural Sciences, Queen Mary, University of London, London E1 4NS, UK
| | - Aman B. Saleem
- Institute of Behavioural Neuroscience, Department of Experimental Psychology, University College London, London WC1H 0AP, UK
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40
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Orlandi JG, Abdolrahmani M, Aoki R, Lyamzin DR, Benucci A. Distributed context-dependent choice information in mouse posterior cortex. Nat Commun 2023; 14:192. [PMID: 36635318 PMCID: PMC9837177 DOI: 10.1038/s41467-023-35824-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 01/03/2023] [Indexed: 01/14/2023] Open
Abstract
Choice information appears in multi-area brain networks mixed with sensory, motor, and cognitive variables. In the posterior cortex-traditionally implicated in decision computations-the presence, strength, and area specificity of choice signals are highly variable, limiting a cohesive understanding of their computational significance. Examining the mesoscale activity in the mouse posterior cortex during a visual task, we found that choice signals defined a decision variable in a low-dimensional embedding space with a prominent contribution along the ventral visual stream. Their subspace was near-orthogonal to concurrently represented sensory and motor-related activations, with modulations by task difficulty and by the animals' attention state. A recurrent neural network trained with animals' choices revealed an equivalent decision variable whose context-dependent dynamics agreed with that of the neural data. Our results demonstrated an independent, multi-area decision variable in the posterior cortex, controlled by task features and cognitive demands, possibly linked to contextual inference computations in dynamic animal-environment interactions.
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Affiliation(s)
- Javier G Orlandi
- RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan.,Department of Physics and Astronomy, University of Calgary, Calgary, Alberta, T2N 1N4, Canada
| | | | - Ryo Aoki
- RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
| | - Dmitry R Lyamzin
- RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
| | - Andrea Benucci
- RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan. .,University of Tokyo, Graduate School of Information Science and Technology, Department of Mathematical Informatics, 1-1-1 Yayoi, Bunkyo City, Tokyo, 113-0032, Japan.
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41
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Dual-Task Interference Slows Down Proprioception. Motor Control 2023:1-15. [PMID: 36599354 DOI: 10.1123/mc.2022-0075] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 10/28/2022] [Accepted: 10/29/2022] [Indexed: 01/05/2023]
Abstract
It is well-known that multitasking impairs the performance of one or both of the concomitant ongoing tasks. Previous studies have mainly focused on how a secondary task can compromise visual or auditory information processing. However, despite dual tasking being critical to motor performance, the effects of dual-task performance on proprioceptive information processing have not been studied yet. The purpose of the present study was, therefore, to investigate whether sensorimotor task performance would be affected by the dual task and if so, in which phase of the sensorimotor task performance would this negative effect occur. The kinematic variables of passive and active knee movements elicited by the leg drop test were analyzed. Thirteen young adults participated in the study. The dual task consisted of performing serial subtractions. The results showed that the dual task increased both the reaction time to counteract passive knee-joint movements in the leg drop test and the threshold to detect those movements. The dual task did not affect the speed and time during the active knee movement and the absolute angle error between the final and the target knee angles. Furthermore, the results showed that the time to complete the sensorimotor task was prolonged in dual tasking. Our findings suggest that dual tasking reduces motor performance due to slowing down proprioceptive information processing without affecting movement execution.
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42
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Parker PRL, Abe ETT, Leonard ESP, Martins DM, Niell CM. Joint coding of visual input and eye/head position in V1 of freely moving mice. Neuron 2022; 110:3897-3906.e5. [PMID: 36137549 PMCID: PMC9742335 DOI: 10.1016/j.neuron.2022.08.029] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 07/16/2022] [Accepted: 08/30/2022] [Indexed: 12/15/2022]
Abstract
Visual input during natural behavior is highly dependent on movements of the eyes and head, but how information about eye and head position is integrated with visual processing during free movement is unknown, as visual physiology is generally performed under head fixation. To address this, we performed single-unit electrophysiology in V1 of freely moving mice while simultaneously measuring the mouse's eye position, head orientation, and the visual scene from the mouse's perspective. From these measures, we mapped spatiotemporal receptive fields during free movement based on the gaze-corrected visual input. Furthermore, we found a significant fraction of neurons tuned for eye and head position, and these signals were integrated with visual responses through a multiplicative mechanism in the majority of modulated neurons. These results provide new insight into coding in the mouse V1 and, more generally, provide a paradigm for investigating visual physiology under natural conditions, including active sensing and ethological behavior.
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Affiliation(s)
- Philip R L Parker
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Elliott T T Abe
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Emmalyn S P Leonard
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Dylan M Martins
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA
| | - Cristopher M Niell
- Institute of Neuroscience and Department of Biology, University of Oregon, Eugene, OR, USA.
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43
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Lohani S, Moberly AH, Benisty H, Landa B, Jing M, Li Y, Higley MJ, Cardin JA. Spatiotemporally heterogeneous coordination of cholinergic and neocortical activity. Nat Neurosci 2022; 25:1706-1713. [PMID: 36443609 PMCID: PMC10661869 DOI: 10.1038/s41593-022-01202-6] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Accepted: 10/12/2022] [Indexed: 11/30/2022]
Abstract
Variation in an animal's behavioral state is linked to fluctuations in brain activity and cognitive ability. In the neocortex, state-dependent circuit dynamics may reflect neuromodulatory influences such as that of acetylcholine (ACh). Although early literature suggested that ACh exerts broad, homogeneous control over cortical function, recent evidence indicates potential anatomical and functional segregation of cholinergic signaling. In addition, it is unclear whether states as defined by different behavioral markers reflect heterogeneous cholinergic and cortical network activity. Here, we perform simultaneous, dual-color mesoscopic imaging of both ACh and calcium across the neocortex of awake mice to investigate their relationships with behavioral variables. We find that higher arousal, categorized by different motor behaviors, is associated with spatiotemporally dynamic patterns of cholinergic modulation and enhanced large-scale network correlations. Overall, our findings demonstrate that ACh provides a highly dynamic and spatially heterogeneous signal that links fluctuations in behavior to functional reorganization of cortical networks.
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Affiliation(s)
- Sweyta Lohani
- Department of Neuroscience, Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, CT, USA
| | - Andrew H Moberly
- Department of Neuroscience, Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, CT, USA
| | - Hadas Benisty
- Department of Neuroscience, Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, CT, USA
| | - Boris Landa
- Program in Applied Mathematics, Yale University, New Haven, CT, USA
| | - Miao Jing
- Chinese Institute for Brain Research, Beijing, China
| | - Yulong Li
- State Key Laboratory of Membrane Biology, Peking University School of Life Sciences, PKU-IDG/McGovern Institute for Brain Research, Peking-Tsinghua Center for Life Sciences, Beijing, China
| | - Michael J Higley
- Department of Neuroscience, Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, CT, USA.
| | - Jessica A Cardin
- Department of Neuroscience, Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, CT, USA.
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44
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Monsees A, Voit KM, Wallace DJ, Sawinski J, Charyasz E, Scheffler K, Macke JH, Kerr JND. Estimation of skeletal kinematics in freely moving rodents. Nat Methods 2022; 19:1500-1509. [PMID: 36253644 PMCID: PMC9636019 DOI: 10.1038/s41592-022-01634-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 09/02/2022] [Indexed: 11/09/2022]
Abstract
Forming a complete picture of the relationship between neural activity and skeletal kinematics requires quantification of skeletal joint biomechanics during free behavior; however, without detailed knowledge of the underlying skeletal motion, inferring limb kinematics using surface-tracking approaches is difficult, especially for animals where the relationship between the surface and underlying skeleton changes during motion. Here we developed a videography-based method enabling detailed three-dimensional kinematic quantification of an anatomically defined skeleton in untethered freely behaving rats and mice. This skeleton-based model was constrained using anatomical principles and joint motion limits and provided skeletal pose estimates for a range of body sizes, even when limbs were occluded. Model-inferred limb positions and joint kinematics during gait and gap-crossing behaviors were verified by direct measurement of either limb placement or limb kinematics using inertial measurement units. Together we show that complex decision-making behaviors can be accurately reconstructed at the level of skeletal kinematics using our anatomically constrained model.
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Affiliation(s)
- Arne Monsees
- Department of Behavior and Brain Organization, Max Planck Institute for Neurobiology of Behavior, Bonn, Germany.
| | - Kay-Michael Voit
- Department of Behavior and Brain Organization, Max Planck Institute for Neurobiology of Behavior, Bonn, Germany
| | - Damian J Wallace
- Department of Behavior and Brain Organization, Max Planck Institute for Neurobiology of Behavior, Bonn, Germany
| | - Juergen Sawinski
- Department of Behavior and Brain Organization, Max Planck Institute for Neurobiology of Behavior, Bonn, Germany
| | - Edyta Charyasz
- High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany
- Department for Biomedical Magnetic Resonance, Eberhard Karls University of Tübingen, Tübingen, Germany
| | - Klaus Scheffler
- High-Field MR Center, Max Planck Institute for Biological Cybernetics, Tübingen, Germany
- Department for Biomedical Magnetic Resonance, Eberhard Karls University of Tübingen, Tübingen, Germany
| | - Jakob H Macke
- Machine Learning in Science, Eberhard Karls University of Tübingen, Tübingen, Germany
- Empirical Inference, Max Planck Institute for Intelligent Systems, Tübingen, Germany
| | - Jason N D Kerr
- Department of Behavior and Brain Organization, Max Planck Institute for Neurobiology of Behavior, Bonn, Germany.
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45
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Lee JY, You T, Woo CW, Kim SG. Optogenetic fMRI for Brain-Wide Circuit Analysis of Sensory Processing. Int J Mol Sci 2022; 23:ijms232012268. [PMID: 36293125 PMCID: PMC9602603 DOI: 10.3390/ijms232012268] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 10/12/2022] [Accepted: 10/12/2022] [Indexed: 11/20/2022] Open
Abstract
Sensory processing is a complex neurological process that receives, integrates, and responds to information from one's own body and environment, which is closely related to survival as well as neurological disorders. Brain-wide networks of sensory processing are difficult to investigate due to their dynamic regulation by multiple brain circuits. Optogenetics, a neuromodulation technique that uses light-sensitive proteins, can be combined with functional magnetic resonance imaging (ofMRI) to measure whole-brain activity. Since ofMRI has increasingly been used for investigating brain circuits underlying sensory processing for over a decade, we systematically reviewed recent ofMRI studies of sensory circuits and discussed the challenges of optogenetic fMRI in rodents.
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Affiliation(s)
- Jeong-Yun Lee
- Center for Neuroscience Imaging Research (CNIR), Institute for Basic Science (IBS), Suwon 16419, Korea
| | - Taeyi You
- Center for Neuroscience Imaging Research (CNIR), Institute for Basic Science (IBS), Suwon 16419, Korea
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon 16419, Korea
- Department of Intelligent Precision Healthcare Convergence, Sungkyunkwan University, Suwon 16419, Korea
| | - Choong-Wan Woo
- Center for Neuroscience Imaging Research (CNIR), Institute for Basic Science (IBS), Suwon 16419, Korea
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon 16419, Korea
- Department of Intelligent Precision Healthcare Convergence, Sungkyunkwan University, Suwon 16419, Korea
| | - Seong-Gi Kim
- Center for Neuroscience Imaging Research (CNIR), Institute for Basic Science (IBS), Suwon 16419, Korea
- Department of Biomedical Engineering, Sungkyunkwan University, Suwon 16419, Korea
- Department of Intelligent Precision Healthcare Convergence, Sungkyunkwan University, Suwon 16419, Korea
- Correspondence: ; Tel.: +82-31-299-4350; Fax: +82-31-299-4506
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46
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Lipp HP, Wolfer DP. Behavior is movement only but how to interpret it? Problems and pitfalls in translational neuroscience-a 40-year experience. Front Behav Neurosci 2022; 16:958067. [PMID: 36330050 PMCID: PMC9623569 DOI: 10.3389/fnbeh.2022.958067] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 09/07/2022] [Indexed: 09/19/2023] Open
Abstract
Translational research in behavioral neuroscience seeks causes and remedies for human mental health problems in animals, following leads imposed by clinical research in psychiatry. This endeavor faces several problems because scientists must read and interpret animal movements to represent human perceptions, mood, and memory processes. Yet, it is still not known how mammalian brains bundle all these processes into a highly compressed motor output in the brain stem and spinal cord, but without that knowledge, translational research remains aimless. Based on some four decades of experience in the field, the article identifies sources of interpretation problems and illustrates typical translational pitfalls. (1) The sensory world of mice is different. Smell, hearing, and tactile whisker sensations dominate in rodents, while visual input is comparatively small. In humans, the relations are reversed. (2) Mouse and human brains are equated inappropriately: the association cortex makes up a large portion of the human neocortex, while it is relatively small in rodents. The predominant associative cortex in rodents is the hippocampus itself, orchestrating chiefly inputs from secondary sensorimotor areas and generating species-typical motor patterns that are not easily reconciled with putative human hippocampal functions. (3) Translational interpretation of studies of memory or emotionality often neglects the ecology of mice, an extremely small species surviving by freezing or flight reactions that do not need much cognitive processing. (4) Further misinterpretations arise from confounding neuronal properties with system properties, and from rigid mechanistic thinking unaware that many experimentally induced changes in the brain do partially reflect unpredictable compensatory plasticity. (5) Based on observing hippocampal lesion effects in mice indoors and outdoors, the article offers a simplistic general model of hippocampal functions in relation to hypothalamic input and output, placing hypothalamus and the supraspinal motor system at the top of a cerebral hierarchy. (6) Many translational problems could be avoided by inclusion of simple species-typical behaviors as end-points comparable to human cognitive or executive processing, and to rely more on artificial intelligence for recognizing patterns not classifiable by traditional psychological concepts.
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Affiliation(s)
- Hans-Peter Lipp
- Institute of Evolutionary Medicine, University of Zürich, Zürich, Switzerland
| | - David P. Wolfer
- Faculty of Medicine, Institute of Anatomy, University of Zürich, Zürich, Switzerland
- Department of Health Sciences and Technology, Institute of Human Movement Sciences and Sport, ETH Zürich, Zürich, Switzerland
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47
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Parker PRL, Abe ETT, Beatie NT, Leonard ESP, Martins DM, Sharp SL, Wyrick DG, Mazzucato L, Niell CM. Distance estimation from monocular cues in an ethological visuomotor task. eLife 2022; 11:e74708. [PMID: 36125119 PMCID: PMC9489205 DOI: 10.7554/elife.74708] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 08/29/2022] [Indexed: 12/02/2022] Open
Abstract
In natural contexts, sensory processing and motor output are closely coupled, which is reflected in the fact that many brain areas contain both sensory and movement signals. However, standard reductionist paradigms decouple sensory decisions from their natural motor consequences, and head-fixation prevents the natural sensory consequences of self-motion. In particular, movement through the environment provides a number of depth cues beyond stereo vision that are poorly understood. To study the integration of visual processing and motor output in a naturalistic task, we investigated distance estimation in freely moving mice. We found that mice use vision to accurately jump across a variable gap, thus directly coupling a visual computation to its corresponding ethological motor output. Monocular eyelid suture did not affect gap jumping success, thus mice can use cues that do not depend on binocular disparity and stereo vision. Under monocular conditions, mice altered their head positioning and performed more vertical head movements, consistent with a shift from using stereopsis to other monocular cues, such as motion or position parallax. Finally, optogenetic suppression of primary visual cortex impaired task performance under both binocular and monocular conditions when optical fiber placement was localized to binocular or monocular zone V1, respectively. Together, these results show that mice can use monocular cues, relying on visual cortex, to accurately judge distance. Furthermore, this behavioral paradigm provides a foundation for studying how neural circuits convert sensory information into ethological motor output.
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Affiliation(s)
- Philip RL Parker
- Institute of Neuroscience, University of OregonEugeneUnited States
| | - Elliott TT Abe
- Institute of Neuroscience, University of OregonEugeneUnited States
| | - Natalie T Beatie
- Institute of Neuroscience, University of OregonEugeneUnited States
| | | | - Dylan M Martins
- Institute of Neuroscience, University of OregonEugeneUnited States
| | - Shelby L Sharp
- Institute of Neuroscience, University of OregonEugeneUnited States
| | - David G Wyrick
- Institute of Neuroscience, University of OregonEugeneUnited States
| | - Luca Mazzucato
- Institute of Neuroscience, University of OregonEugeneUnited States
- Department of Mathematics, University of OregonEugeneUnited States
| | - Cristopher M Niell
- Institute of Neuroscience, University of OregonEugeneUnited States
- Department of Biology, University of OregonEugeneUnited States
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48
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Ngo V, Gorman JC, De la Fuente MF, Souto A, Schiel N, Miller CT. Active vision during prey capture in wild marmoset monkeys. Curr Biol 2022; 32:3423-3428.e3. [PMID: 35750054 PMCID: PMC10203885 DOI: 10.1016/j.cub.2022.06.028] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 06/08/2022] [Accepted: 06/09/2022] [Indexed: 10/17/2022]
Abstract
A foundational pressure in the evolution of all animals is the ability to travel through the world, inherently coupling the sensory and motor systems. While this relationship has been explored in several species,1-4 it has been largely overlooked in primates, which have typically relied on paradigms in which head-restrained subjects view stimuli on screens.5 Natural visual behaviors, by contrast, are typified by locomotion through the environment guided by active sensing as animals explore and interact with the world,4,6 a relationship well illustrated by prey capture.7-12 Here, we characterized prey capture in wild marmoset monkeys as they negotiated their dynamic, arboreal habitat to illustrate the inherent role of vision as an active process in natural nonhuman primate behavior. Not only do marmosets share the core properties of vision that typify the primate Order,13-18 but they are prolific hunters that prey on a diverse set of prey animals.19-22 Marmosets pursued prey using vision in several different contexts, but executed precise visually guided motor control that predominantly involved grasping with hands for successful capture of prey. Applying markerless tracking for the first time in wild primates yielded novel findings that precisely quantified how marmosets track insects prior to initiating an attack and the rapid visually guided corrections of the hands during capture. These findings offer the first detailed insight into the active nature of vision to guide multiple facets of a natural goal-directed behavior in wild primates and can inform future laboratory studies of natural primate visual behaviors and the supporting neural processes.
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Affiliation(s)
- Victoria Ngo
- Cortical Systems and Behavior Laboratory, University of California, San Diego, La Jolla, CA 92039, USA
| | - Julia C Gorman
- Cortical Systems and Behavior Laboratory, University of California, San Diego, La Jolla, CA 92039, USA; Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA 92039, USA
| | - María Fernanda De la Fuente
- Programa de Pós-graduação em Etnobiologia e Conservação da Natureza, Universidade Estadual da Paraíba, Campina Grande, Paraíba 58429-500, Brazil; Laboratório de Etologia Teórica e Aplicada, Departamento de Biologia, Universidade Federal Rural de Pernambuco, Recife, Pernambuco 52171-900, Brazil
| | - Antonio Souto
- Laboratório de Etologia, Departamento de Zoologia, Universidade Federal de Pernambuco, Recife, Pernambuco 50670-901, Brazil
| | - Nicola Schiel
- Laboratório de Etologia Teórica e Aplicada, Departamento de Biologia, Universidade Federal Rural de Pernambuco, Recife, Pernambuco 52171-900, Brazil
| | - Cory T Miller
- Cortical Systems and Behavior Laboratory, University of California, San Diego, La Jolla, CA 92039, USA; Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA 92039, USA.
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49
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Driscoll LN, Duncker L, Harvey CD. Representational drift: Emerging theories for continual learning and experimental future directions. Curr Opin Neurobiol 2022; 76:102609. [PMID: 35939861 DOI: 10.1016/j.conb.2022.102609] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Revised: 06/08/2022] [Accepted: 06/23/2022] [Indexed: 11/03/2022]
Abstract
Recent work has revealed that the neural activity patterns correlated with sensation, cognition, and action often are not stable and instead undergo large scale changes over days and weeks-a phenomenon called representational drift. Here, we highlight recent observations of drift, how drift is unlikely to be explained by experimental confounds, and how the brain can likely compensate for drift to allow stable computation. We propose that drift might have important roles in neural computation to allow continual learning, both for separating and relating memories that occur at distinct times. Finally, we present an outlook on future experimental directions that are needed to further characterize drift and to test emerging theories for drift's role in computation.
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Affiliation(s)
- Laura N Driscoll
- Department of Electrical Engineering, Stanford University, Stanford, CA, USA.
| | - Lea Duncker
- Howard Hughes Medical Institute, Stanford University, Stanford, CA, USA.
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50
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Tseng SY, Chettih SN, Arlt C, Barroso-Luque R, Harvey CD. Shared and specialized coding across posterior cortical areas for dynamic navigation decisions. Neuron 2022; 110:2484-2502.e16. [PMID: 35679861 PMCID: PMC9357051 DOI: 10.1016/j.neuron.2022.05.012] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 01/31/2022] [Accepted: 05/13/2022] [Indexed: 11/25/2022]
Abstract
Animals adaptively integrate sensation, planning, and action to navigate toward goal locations in ever-changing environments, but the functional organization of cortex supporting these processes remains unclear. We characterized encoding in approximately 90,000 neurons across the mouse posterior cortex during a virtual navigation task with rule switching. The encoding of task and behavioral variables was highly distributed across cortical areas but differed in magnitude, resulting in three spatial gradients for visual cue, spatial position plus dynamics of choice formation, and locomotion, with peaks respectively in visual, retrosplenial, and parietal cortices. Surprisingly, the conjunctive encoding of these variables in single neurons was similar throughout the posterior cortex, creating high-dimensional representations in all areas instead of revealing computations specialized for each area. We propose that, for guiding navigation decisions, the posterior cortex operates in parallel rather than hierarchically, and collectively generates a state representation of the behavior and environment, with each area specialized in handling distinct information modalities.
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Affiliation(s)
- Shih-Yi Tseng
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Selmaan N Chettih
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
| | - Charlotte Arlt
- Department of Neurobiology, Harvard Medical School, Boston, MA 02115, USA
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