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Miller ML, Rota C, Welsh A. Transforming gastrointestinal helminth parasite identification in vertebrate hosts with metabarcoding: a systematic review. Parasit Vectors 2024; 17:311. [PMID: 39030625 PMCID: PMC11265005 DOI: 10.1186/s13071-024-06388-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2024] [Accepted: 07/03/2024] [Indexed: 07/21/2024] Open
Abstract
BACKGROUND Gastrointestinal helminths are a very widespread group of intestinal parasites that can cause major health issues in their hosts, including severe illness or death. Traditional methods of helminth parasite identification using microscopy are time-consuming and poor in terms of taxonomic resolution, and require skilled observers. DNA metabarcoding has emerged as a powerful alternative for assessing community composition in a variety of sample types over the last few decades. While metabarcoding approaches have been reviewed for use in other research areas, the use of metabarcoding for parasites has only recently become widespread. As such, there is a need to synthesize parasite metabarcoding methodology and highlight the considerations to be taken into account when developing a protocol. METHODS We reviewed published literature that utilized DNA metabarcoding to identify gastrointestinal helminth parasites in vertebrate hosts. We extracted information from 62 peer-reviewed papers published between 2014 and 2023 and created a stepwise guide to the metabarcoding process. RESULTS We found that studies in our review varied in technique and methodology, such as the sample type utilized, genetic marker regions targeted and bioinformatic databases used. The main limitations of metabarcoding are that parasite abundance data may not be reliably attained from sequence read numbers, metabarcoding data may not be representative of the species present in the host and the cost and bioinformatic expertise required to utilize this method may be prohibitive to some groups. CONCLUSIONS Overall, using metabarcoding to assess gastrointestinal parasite communities is preferable to traditional methods, yielding higher taxonomic resolution, higher throughput and increased versatility due to its utility in any geographical location, with a variety of sample types, and with virtually any vertebrate host species. Additionally, metabarcoding has the potential for exciting new discoveries regarding host and parasite evolution.
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Affiliation(s)
- Madison L Miller
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA.
| | - Christopher Rota
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA
| | - Amy Welsh
- Division of Forestry and Natural Resources, West Virginia University, Morgantown, WV, USA
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Phetla V, Chaisi M, Malatji MP. Epidemiology and diversity of gastrointestinal tract helminths of wild ruminants in sub-Saharan Africa: a review. J Helminthol 2024; 98:e45. [PMID: 38828717 DOI: 10.1017/s0022149x24000361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
Abstract
This review summarises studies on distribution, diversity, and prevalence of gastrointestinal helminth infections in wild ruminants in sub-Saharan Africa. The results showed that 109 gastrointestinal tract (GIT) helminth species or species complexes were recorded in 10 sub-Saharan African countries. South Africa reported the highest number of species because most studies were carried out in this country. Eighty-eight nematode species or species complexes were recorded from 30 wild ruminant species across eight countries. The genus Trichostrongylus recorded the highest number of species and utilised the highest number of wild ruminant species, and along with Haemonchus spp., was the most widely distributed geographically. Fifteen trematode species or species complexes were reported from seven countries. The genus Paramphistomum recorded the highest number of species, and Calicophoron calicophoron was the most commonly occurring species in sub-Saharan African countries and infected the highest number of hosts. Six cestode species or species complexes from one family were documented from 14 wild hosts in seven countries. Moniezia spp. were the most commonly distributed in terms of host range and geographically. Impala were infected by the highest number of nematodes, whilst Nyala were infected by the highest number of trematode species. Greater kudu and Impala harbored the largest number of cestodes. The prevalence amongst the three GIT helminths taxa ranged between 1.4% and 100% for nematodes, 0.8% and 100% for trematodes, and 1.4% and 50% for cestodes. There is still limited information on the distribution and diversity of GIT helminths in wild ruminants in most sub-Saharan African countries.
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Affiliation(s)
- V Phetla
- Foundational Biodiversity Science, South African National Biodiversity Institute, P.O. Box 754, Pretoria0001, South Africa
| | - M Chaisi
- Foundational Biodiversity Science, South African National Biodiversity Institute, P.O. Box 754, Pretoria0001, South Africa
- Department of Veterinary Tropical Diseases, University of Pretoria, Onderstepoort0110, South Africa
| | - M P Malatji
- School of Life Science, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Westville Campus, Durban4001, South Africa
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Antonopoulos A, Gilleard JS, Charlier J. Next-generation sequencing technologies for helminth diagnostics and surveillance in ruminants: shifting diagnostic barriers. Trends Parasitol 2024; 40:511-526. [PMID: 38760257 DOI: 10.1016/j.pt.2024.04.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 04/16/2024] [Accepted: 04/17/2024] [Indexed: 05/19/2024]
Abstract
Helminth infections in grazing ruminants are a major issue for livestock farming globally, but are unavoidable in outdoor grazing systems and must be effectively managed to avoid deleterious effects to animal health, and productivity. Next-generation sequencing (NGS) technologies are transforming our understanding of the genetic basis of anthelmintic resistance (AR) and epidemiological studies of ruminant gastrointestinal parasites. They also have the potential to not only help develop and validate molecular diagnostic tests but to be directly used in routine diagnostics integrating species-specific identification and AR into a single test. Here, we review how these developments have opened the pathway for the development of multi-AR and multispecies identification in a single test, with widespread implications for sustainable livestock farming for the future.
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Affiliation(s)
- Alistair Antonopoulos
- Kreavet, Kruibeke, Belgium; School of Biodiversity, One Health, and Veterinary Medicine, University of Glasgow, Glasgow, UK.
| | - John S Gilleard
- Faculty of Veterinary Medicine, Host-Parasite Interactions Program, University of Calgary, Calgary, Alberta, Canada
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Brown TL, Morgan ER. Helminth Prevalence in European Deer with a Focus on Abomasal Nematodes and the Influence of Livestock Pasture Contact: A Meta-Analysis. Pathogens 2024; 13:378. [PMID: 38787230 PMCID: PMC11123710 DOI: 10.3390/pathogens13050378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/21/2024] [Accepted: 04/24/2024] [Indexed: 05/25/2024] Open
Abstract
Deer are susceptible to infection with parasitic helminths, including species which are of increasing economic concern to the livestock industry due to anthelmintic drug resistance. This paper systematically collates helminth prevalence data from deer across Europe and explores patterns in relation to host and parasite species, as well as landscape factors. A livestock pasture contact index (LPCI) is developed to predict epidemiological overlap between deer and livestock, and hence to examine deer helminth fauna in the context of their surrounding environment. Fifty-eight studies comprising fallow (Dama dama), red (Cervus elaphus), roe (Capreolus capreolus) and sika (Cervus nippon) deer were identified. Deer populations in "likely" contact with livestock pasture had a higher mean prevalence of the abomasal nematodes Haemonchus contortus, Ostertagia ostertagi, Teladorsagia circumcincta and Trichostrongylus axei (p = 0.01), which are common in livestock and not primarily associated with deer. Roe deer populations had a higher prevalence of T. circumcincta (p = 0.02) and T. axei (p = 0.01) than fallow deer and a higher prevalence of H. contortus than both red (p = 0.01) and fallow deer (p = 0.02). Liver fluke and lungworm species were present sporadically at low prevalence, while the abomasal nematode Ashworthius sidemi occurred locally at high prevalence. Insights from this research suggest that deer helminth fauna is reflective of their surrounding environment, including the livestock species which inhabit areas of shared grazing. This is explored from an epidemiological perspective, and the prospect of helminth transmission between wild and domestic hosts is discussed, including drug-resistant strains, alongside the role of helminths as indicators relevant to the transmission of other pathogens at the wildlife-livestock interface.
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Affiliation(s)
| | - Eric R. Morgan
- School of Biological Sciences, Queen’s University Belfast, Belfast BT9 5DL, UK
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Wangboon C, Martviset P, Jamklang M, Chumkiew S, Penkhrue W, Rangdist S, Jirojwong R, Phadungsil W, Chantree P, Grams R, Krenc D, Piyatadsananon P, Geadkaew-Krenc A. Microscopic and molecular epidemiology of gastrointestinal nematodes in dairy and beef cattle in Pak Chong district, Nakhon Ratchasima province, Thailand. Vet World 2024; 17:1035-1043. [PMID: 38911081 PMCID: PMC11188888 DOI: 10.14202/vetworld.2024.1035-1043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Accepted: 04/18/2024] [Indexed: 06/25/2024] Open
Abstract
Background and Aim Gastrointestinal (GI) nematode infection remains an important problem in livestock, particularly cattle. The infection may lead to serious health complications and affect animal products. The objective of this study was to investigate GI nematode infection and its associated risk factors in dairy and beef cattle farmed in Pak Chong District of Nakhon Ratchasima Province, northeast Thailand. Materials and Methods Fecal specimens were collected from 101 dairy cattle and 100 beef cattle. Formalin-ethyl acetate concentration techniques were used to process the samples and the samples were observed under a light microscope. Samples were subjected to molecular identification of specific genera using conventional polymerase chain reaction and DNA sequencing. Results The overall prevalence of GI nematode infection was 33.3%. The strongyle nematode was the most significant GI nematode in this area with a prevalence of 28.4%. The prevalence of strongyle nematodes was 58.0% in beef cattle and only 7.9% in dairy cattle. Trichuris spp. was another nematode found in both types of cattle with an overall prevalence of 5.0% with 9.0% in beef cattle and 1.0% in dairy cattle. The results of the epidemiological study indicate that the age of cattle, food, water sources, farming system, and housing floor are the most important risk factors. Among the strongyle nematodes, Ostertagia spp. was the most prevalent (82.0%), followed by Haemonchus spp. (62.3%) and Trichostrongylus spp. (8.2%), respectively. Conclusion Infection with GI nematodes still exists in this area, particularly in beef cattle. Our reported data may benefit local parasitic control policies in the future.
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Affiliation(s)
- Chompunoot Wangboon
- School of Preclinical Sciences, Institute of Science, Suranaree University of Technology, Muang, Nakhon Ratchasima 30000, Thailand
| | - Pongsakorn Martviset
- Department of Preclinical Science, Faculty of Medicine, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
| | - Mantana Jamklang
- School of Preclinical Sciences, Institute of Science, Suranaree University of Technology, Muang, Nakhon Ratchasima 30000, Thailand
| | - Sirilak Chumkiew
- School of Biology, Institute of Science, Suranaree University of Technology, Muang, Nakhon Ratchasima 30000, Thailand
| | - Watsana Penkhrue
- School of Preclinical Sciences, Institute of Science, Suranaree University of Technology, Muang, Nakhon Ratchasima 30000, Thailand
| | - Sainamthip Rangdist
- School of Preclinical Sciences, Institute of Science, Suranaree University of Technology, Muang, Nakhon Ratchasima 30000, Thailand
| | - Ruttiroj Jirojwong
- Department of Livestock Development, Bureau of Veterinary Biologics, Pak Chong, Nakhon Ratchasima, 30130, Thailand
| | - Wansika Phadungsil
- Graduate Program in Biomedical Sciences, Faculty of Allied Health Sciences, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
| | - Pathanin Chantree
- Department of Preclinical Science, Faculty of Medicine, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
| | - Rudi Grams
- Graduate Program in Biomedical Sciences, Faculty of Allied Health Sciences, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
| | - Dawid Krenc
- Chulabhorn International College of Medicine, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
| | - Pantip Piyatadsananon
- School of Geoinformatics, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - Amornrat Geadkaew-Krenc
- Graduate Program in Biomedical Sciences, Faculty of Allied Health Sciences, Thammasat University, Khlong Luang, Pathum Thani 12120, Thailand
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Lyons M, Brown TL, Lahuerta-Marin A, Morgan ER, Airs PM. A molecular assessment of Ostertagia leptospicularis and Spiculopteragia asymmetrica among wild fallow deer in Northern Ireland and implications for false detection of livestock-associated species. Parasit Vectors 2024; 17:141. [PMID: 38500187 PMCID: PMC10949651 DOI: 10.1186/s13071-024-06147-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 01/18/2024] [Indexed: 03/20/2024] Open
Abstract
BACKGROUND Wild deer populations utilizing livestock grazing areas risk cross-species transmission of gastrointestinal nematode parasites (GINs), including GINs with anthelmintic resistance (AR) traits. Wild deer have been shown to carry problematic GIN species such as Haemonchus contortus and Trichostrongylus species in the UK, but the presence of livestock GINs in Northern Ireland deer populations is unknown. Also, is it not known whether AR traits exist among GINs of deer such as Ostertagia leptospicularis and Spiculopteragia asymmetrica in pastureland where anthelmintics are heavily used. METHODS Adult-stage GIN samples were retrieved from Northern Irish wild fallow deer abomasa. Individual specimens were subject to a species-specific PCR analysis for common sheep and cattle GIN species with ITS-2 sequence analysis to validate species identities. In addition, the beta-tubulin gene was subject to sequencing to identify benzimidazole (BZ) resistance markers. RESULTS ITS-2 sequencing revealed O. leptospicularis and S. asymmetrica, but species-specific PCR yielded false-positive hits for H. contortus, Teladorsagia circimcincta, Trichostrongylus axei, T. colubriformis, T. vitrinus and Ostertagia ostertagi. For beta-tubulin, O. leptospicularis and S. asymmetrica yielded species-specific sequences at the E198 codon, but no resistance markers were identified in either species at positions 167, 198 or 200 of the coding region. DISCUSSION From this report, no GIN species of significance in livestock were identified among Northern Ireland fallow deer. However, false-positive PCR hits for sheep and cattle-associated GINs is concerning as the presence of deer species in livestock areas could impact both deer and livestock diagnostics and lead to overestimation of both GIN burden in deer and the role as of deer as drivers of these pathogens. ITS-2 sequences from both O. leptospicularis and S. asymmetrica show minor sequence variations to geographically distinct isolates. AR has been noted among GINs of deer but molecular analyses are lacking for GINs of wildlife. In producing the first beta-tubulin sequences for both O. leptospicularis and S. asymmetrica, we report no BZ resistance in this cohort. CONCLUSIONS This work contributes to genetic resources for wildlife species and considers the implications of such species when performing livestock GIN diagnostics.
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Affiliation(s)
- Maggie Lyons
- School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
- Agri-Food and Biosciences Institute Northern Ireland, 12 Stoney Road, Belfast, Co Antrim, BT4 3SD, UK
| | - Tony L Brown
- School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
| | - Angela Lahuerta-Marin
- Agri-Food and Biosciences Institute Northern Ireland, 12 Stoney Road, Belfast, Co Antrim, BT4 3SD, UK
| | - Eric R Morgan
- School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK
| | - Paul M Airs
- School of Biological Sciences, Queen's University Belfast, 19 Chlorine Gardens, Belfast, BT9 5DL, UK.
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Zazay J, Bhat BA, Tak H, Lone AN. Gastrointestinal parasites of the wild ungulates (Mammalia: Cetartiodactyla) in the Hemis National Park, Ladakh, India. J Parasit Dis 2024; 48:134-140. [PMID: 38440757 PMCID: PMC10908697 DOI: 10.1007/s12639-024-01652-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 01/23/2024] [Indexed: 03/06/2024] Open
Abstract
We evaluated the gastrointestinal parasitic prevalence and intensity of wild ungulates in the Hemis National Park of Ladakh by examining their fresh faecal samples. A total of 327 fresh faecal samples from three wild ungulates, blue sheep Pseudois nayaur (n = 127), Ladakh urial Ovis vignei vignei (n = 110), and Himalayan ibex Ibex siberica (n = 90) were collected between June 2021 and May 2022. The techniques of flotation and sedimentation were used to find parasite eggs and oocysts from the faecal samples. Out of 327 samples examined, 165 samples were infected with gastrointestinal parasites making an overall prevalence of 50.45%. Seven parasitic taxa, including one protozoan (Eimeria spp.), five nematodes (Nematodirus spp., Strongyloides spp., Haemonchus sp., Trichuris sp., and Trichostrongylus spp.), and one cestode (Monezia spp.), were found during the current investigation. Mixed infection was reported in 36 (11%) of the total examined samples. The prevalence of gastrointestinal parasites was found to be highest in blue sheep (55.11%), followed by Ladakh urial (49.09%) and Himalayan ibex (45.55%). The highest prevalence was recorded in the summer (64.42%), and the lowest in the winter (33.82%). A significant difference in parasitic prevalence was observed across seasons in each of the three wild ungulate hosts. However, there was no significant difference in the prevalence of parasites between these hosts.
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Affiliation(s)
- Jigmet Zazay
- Department of Zoology, University of Kashmir, Hazratbal, Srinagar, 190006 India
| | - Bilal A. Bhat
- Department of Zoology, University of Kashmir, Hazratbal, Srinagar, 190006 India
| | - Hidayatullah Tak
- Department of Zoology, University of Kashmir, Hazratbal, Srinagar, 190006 India
| | - Arif Nabi Lone
- Department of Zoology, University of Kashmir, Hazratbal, Srinagar, 190006 India
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González S, del Rio ML, Díez-Baños N, Martínez A, Hidalgo MDR. Contribution to the Knowledge of Gastrointestinal Nematodes in Roe Deer ( Capreolus capreolus) from the Province of León, Spain: An Epidemiological and Molecular Study. Animals (Basel) 2023; 13:3117. [PMID: 37835723 PMCID: PMC10571729 DOI: 10.3390/ani13193117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 09/14/2023] [Accepted: 09/20/2023] [Indexed: 10/15/2023] Open
Abstract
A study of gastrointestinal nematodes in roe deer was carried out in the regional hunting reserves of Riaño and Mampodre, Province of León, Spain, to provide information on their prevalence and intensity of infection in relation to the sampling areas, age of the animals, and body weight. Through a regulated necropsy of the animals, all of them harbored gastrointestinal nematodes in their digestive tract, with a mean intensity of parasitism of 638 ± 646.1 nematodes/infected animal. Eleven genera were found and 18 species of gastrointestinal nematodes were identified, three of them polymorphic: Trichostrongylus axei, Trichostrongylus vitrinus, Trichostrongylus capricola, Trichostrongylus colubriformis, Haemonchus contortus, Spiculopteragia spiculoptera/Spiculopteragia mathevossiani, Ostertagia leptospicularis/Ostertagia kolchida, Ostertagia (Grosspiculopteragia) occidentalis, Teladorsagia circumcincta/Teladorsagia trifurcate, Marshallagia marshalli, Nematodirus europaeus, Cooperia oncophora, Capillaria bovis, Oesophagostomum venulosum, and Trichuris ovis. All of them have already been cited in roe deer in Europe, but Marshallagia marshalli, Capillaria bovis, and Ostertagia (Grosspiculopteragia) occidentalis are reported for the first time in Spain in this host. The abomasum was the intestinal section, where the prevalence (98.9%) and mean intensity (x¯ = 370.7 ± 374.4 worms/roe deer; range 3-1762) were significantly higher, but no statistically significant differences were found when comparing the sampling areas and age of animals. The animals with lower body weight had a higher parasite load than those in better physical condition, finding, in this case, statistically significant differences (p = 0.0020). Seven genera and 14 species were identified. In the small intestine, 88% of the animals examined presented gastrointestinal nematodes, with an average intensity of x¯ = 131.7 ± 225.6 parasites/infected animal, ranging between 4-1254 worms. No statistically significant differences were found when the three parameters studied were compared. Four genera and seven species were identified. In the large intestine/cecum, 78.3% of the examined roe deer presented adult worms, with an average intensity of 6.3 ± 5.5 worms/infected animal; range 1-26 worms. Only statistically significant differences were observed when considering the mean intensity of parasitism and the sampling area (p = 0.0093). Two genera and two species were identified. Several of the species found in the study were studied molecularly, and with the sequences obtained compared with those deposited in GenBank, phylogenetic trees were prepared to determine their taxonomic status. Using coprological techniques, the existing correlation in the shedding of gastrointestinal nematode eggs in roe deer was investigated with that of semi-extensive sheep farms in the same study area to verify the existence of cross-transmission of these parasites between wild and domestic animals. The high values found in the studied parameters show that northern Spain is an area of high-intensity infection for roe deer.
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Affiliation(s)
- Sara González
- Department of Animal Health, Parasitology and Parasitic Diseases, Faculty of Veterinary Science, University of León, 24007 León, Spain; (S.G.); (M.d.R.H.)
| | - María Luisa del Rio
- Department of Animal Health, Section of Immunobiology, Faculty of Veterinary Science, University of León, 24007 León, Spain;
| | - Natividad Díez-Baños
- Department of Animal Health, Parasitology and Parasitic Diseases, Faculty of Veterinary Science, University of León, 24007 León, Spain; (S.G.); (M.d.R.H.)
| | - Angélica Martínez
- Department of Biotechnology and Food Science, Faculty of Sciences, University of Burgos, 09001 Burgos, Spain;
| | - María del Rosario Hidalgo
- Department of Animal Health, Parasitology and Parasitic Diseases, Faculty of Veterinary Science, University of León, 24007 León, Spain; (S.G.); (M.d.R.H.)
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Beltrame MO, Moviglia GS, De Tommaso D, Quintana S. Gastrointestinal parasites of domestic sheep from Patagonia throughout historical times: A paleoparasitological approach. Vet Parasitol Reg Stud Reports 2023; 44:100915. [PMID: 37652634 DOI: 10.1016/j.vprsr.2023.100915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 07/19/2023] [Accepted: 07/25/2023] [Indexed: 09/02/2023]
Abstract
Sheep husbandry in Patagonia, Argentina, started at the beginning of the 20th century from European settlers. Sanitary management is minimal, which has serious implications for the sheep health. Sheep can be infested by diverse parasites, with well over 150 species of internal and external parasites reported worldwide. Gastrointestinal parasitism is one of the most common and important infections in sheep concerning the health status, and is the cause of significant morbidity and mortality, which generates considerable production losses. The present work is the first paleoparasitological study of sheep coprolites from Patagonia throughout historical times. Fifty-seven coprolites from the 'Cueva Peligro' archaeological site (Patagonia, Argentina) were analyzed using the Lutz spontaneous sedimentation technique and the modified Faust flotation technique. Ancient DNA (aDNA) study was carried out in order to identify the zoological origin of coprolites. The results obtained from Cytb analysis confirmed the identity of the host as Ovis aries (domestic sheep). A total of 39 coprolites examined were positive for parasites by at least one of the studied methods. Thirty eight samples were positive by spontaneous sedimentation and 10 samples were positive by the modified Faust technique. The parasitic fauna found was Trichuris sp. (Trichinellida: Trichuridae), Nematodirus sp., Nematodirus spathiger (Strongylida, Trichostrongyloidea), two unidentified Strongylida-type egg morphotypes, Fasciola hepatica (Trematoda: Digenea) and coccidia oocysts of Eimeria spp. (Apicomplexa: Eimeriidae). The modified Faust technique provided satisfactory results in terms of sensitivity for the detection of Eimeria spp. The use of this methodology as a routine procedure enables the processing of ancient samples, in order to increase recoveries. These results show the importance of integrating different diagnostic approaches in order to optimize parasitic findings. The recorded parasite diversity appears to have not changed over the last 120 years. The study displayed the presence of different parasitic species which suggests potential exposure to parasitic diseases through the historical times, both for sheep and for other domestic and wild mammals from Patagonia. Also, suggests the presence of fasciolosis, a zoonotic disease that implies a potential risk for Patagonian populations in the past.
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Affiliation(s)
- María Ornela Beltrame
- Instituto de Investigaciones en Producción, Sanidad y Ambiente (IIPROSAM), Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Buenos Aires, Argentina.
| | - Gloria Sofía Moviglia
- Instituto de Investigaciones en Producción, Sanidad y Ambiente (IIPROSAM), Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Buenos Aires, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
| | - Daniela De Tommaso
- Grupo de Investigación en Gestión, Desarrollo Territorial y Ambiente (GesDTA), Facultad Regional Chubut, Universidad Tecnológica Nacional (FRCh-UTN)
| | - Silvina Quintana
- Instituto de Investigaciones en Producción, Sanidad y Ambiente (IIPROSAM), Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Buenos Aires, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina
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Gałązka M, Klich D, Filip-Hutsch K, Olech W, Anusz K, Pyziel AM. Endoparasite loads and the efficacy of conventional anthelmintics against gastrointestinal nematodes in captive European bison. Int J Parasitol Parasites Wildl 2023; 21:224-231. [PMID: 37415923 PMCID: PMC10319643 DOI: 10.1016/j.ijppaw.2023.06.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 05/17/2023] [Accepted: 06/17/2023] [Indexed: 07/08/2023]
Abstract
Although little information exists on the efficacy of deworming in wild ruminants, gastrointestinal nematodes have been found to demonstrate increasing drug resistance. The spread of drug-resistant strains may be increased by transmission among livestock and susceptible wildlife species, thus posing a potential threat to endangered species, such as the European bison. The aim of the study was twofold: to identify the parasite loads in captive European bison with the use of coprological techniques, and to test the influence of other nearby ungulates on the richness of bison parasitofauna. Additionally, the efficacy of deworming procedures against gastrointestinal nematodes in bison was evaluated. The survey was based on a coprological investigation of 285 fecal samples from 156 European bison in 15 enclosures. The parasitofauna of the captive European bison was consistent with those of free-ranging populations. The highest prevalence was noted for Eimeria spp. oocysts (60.7%), strongyle eggs (50.9%), Fasciola hepatica eggs (13.1%), Dictyocaulus viviparus larvae (12.3%) and Trichuris sp. Eggs (9.47%). Moreover, the close proximity of other ungulate species resulted in a higher diversity of parasite species. In all cases, deworming with albendazole, fenbendazole and ivermectin proved to be ineffective against strongylids and Trichuris sp. The results of fecal egg count reduction test (FECRT) ranged from 37.2 to 99.6% (95% CI <90%) for albendazole; values >95% (95% CI = 41-100) were noted for fenbendazole, and FECRT ranged from 63.2 to 97.5 (95% CI = 0-99) for ivermectin. As the results of anthelmintic treatment are unsatisfactory, it seems justified to continue study in this area. Our study is the first large-scale attempt to evaluate the efficacy of anthelminthics in captive European bison. The potential sharing of parasite species between bison and other ungulates should also be further investigated from the perspective of minimizing the risk of the spread of drug-resistant parasite strains.
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Affiliation(s)
- Marta Gałązka
- Department of Food Hygiene and Public Health Protection, Institute of Veterinary Medicine, Warsaw University of Life Sciences - WULS, Nowoursynowska 159, 02-776, Warsaw, Poland
- Municipal Zoological Garden in Warsaw, Ratuszowa 1/3, 03-461, Warsaw, Poland
| | - Daniel Klich
- Department of Animal Genetics and Conservation, Institute of Animal Sciences, Warsaw University of Life Sciences - WULS, Ciszewskiego 8, 02-787, Warsaw, Poland
| | - Katarzyna Filip-Hutsch
- Department of Food Hygiene and Public Health Protection, Institute of Veterinary Medicine, Warsaw University of Life Sciences - WULS, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Wanda Olech
- Department of Animal Genetics and Conservation, Institute of Animal Sciences, Warsaw University of Life Sciences - WULS, Ciszewskiego 8, 02-787, Warsaw, Poland
| | - Krzysztof Anusz
- Department of Food Hygiene and Public Health Protection, Institute of Veterinary Medicine, Warsaw University of Life Sciences - WULS, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Anna M. Pyziel
- Department of Food Hygiene and Public Health Protection, Institute of Veterinary Medicine, Warsaw University of Life Sciences - WULS, Nowoursynowska 159, 02-776, Warsaw, Poland
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11
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Francis EK, Šlapeta J. Refugia or reservoir? Feral goats and their role in the maintenance and circulation of benzimidazole-resistant gastrointestinal nematodes on shared pastures. Parasitology 2023; 150:672-682. [PMID: 37165895 PMCID: PMC10410396 DOI: 10.1017/s0031182023000380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 03/07/2023] [Accepted: 04/12/2023] [Indexed: 05/12/2023]
Abstract
Gastrointestinal nematodes threaten the productivity of grazing livestock and anthelmintic resistance has emerged globally. It is broadly understood that wild ruminants living in sympatry with livestock act as a positive source of refugia for anthelmintic-susceptible nematodes. However, they might also act as reservoirs of anthelmintic-resistant nematodes, contributing to the spread of anthelmintic resistance at a regional scale. Here, we sampled managed sheep and cattle together with feral goats within the same property in New South Wales, Australia. Internal transcribed spacer 2 (ITS-2) nemabiome metabarcoding identified 12 gastrointestinal nematodes (Cooperia oncophora, Cooperia punctata, Haemonchus contortus, Haemonchus placei, Nematodirus spathiger, Ostertagia ostertagi, Teladorsagia circumcincta, Oesophagostomum radiatum, Oesophagostomum venulosum, Trichostrongylus axei, Trichostrongylus colubriformis and Trichostrongylus rugatus). Isotype-1 β-tubulin metabarcoding targeting benzimidazole resistance polymorphisms identified 6 of these nematode species (C. oncophora, C. punctata, H. contortus, H. placei, O. ostertagi and T. circumcincta), with the remaining 3 genera unable to be identified to the species level (Nematodirus, Oesophagostomum, Trichostrongylus). Both ITS-2 and β-tubulin metabarcoding showed the presence of a cryptic species of T. circumcincta, known from domestic goats in France. Of the gastrointestinal nematodes detected via β-tubulin metabarcoding, H. contortus, T. circumcincta, Nematodirus and Trichostrongylus exhibited the presence of at least one resistance genotype. We found that generalist gastrointestinal nematodes in untreated feral goats had a similarly high frequency of the benzimidazole-resistant F200Y polymorphism as those nematodes in sheep and cattle. This suggests cross-transmission and maintenance of the resistant genotype within the wild ruminant population, affirming that wild ruminants should be considered potential reservoirs of anthelmintic resistance.
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Affiliation(s)
- Emily Kate Francis
- Sydney School of Veterinary Science, Faculty of Science, The University of Sydney, New South Wales 2006, Australia
| | - Jan Šlapeta
- Sydney School of Veterinary Science, Faculty of Science, The University of Sydney, New South Wales 2006, Australia
- The University of Sydney Institute for Infectious Diseases, New South Wales 2006, Australia
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12
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Davey ML, Kamenova S, Fossøy F, Solberg EJ, Davidson R, Mysterud A, Rolandsen CM. Faecal metabarcoding provides improved detection and taxonomic resolution for non-invasive monitoring of gastrointestinal nematode parasites in wild moose populations. Parasit Vectors 2023; 16:19. [PMID: 36653864 PMCID: PMC9847159 DOI: 10.1186/s13071-022-05644-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 12/28/2022] [Indexed: 01/19/2023] Open
Abstract
BACKGROUND Although wild ungulate populations are heavily monitored throughout Europe, we understand little of how parasites affect population dynamics, and there is no systematic, long-term monitoring of parasite diversity and parasite loads. Such monitoring is in part hampered by a lack of time- and cost-effective assay methodologies with high sensitivity and good taxonomic resolution. DNA metabarcoding has been successfully used to characterize the parasitic nemabiome with high taxonomic resolution in a variety of wild and domestic hosts. However, in order to implement this technique in large-scale, potentially non-invasive monitoring of gastrointestinal parasitic nematodes (GIN), protocol optimization is required to maximize biodiversity detection, whilst maintaining time- and cost-effectiveness. METHODS Faecal samples were collected from a wild moose population and GIN communities were characterized and quantified using both parasitological techniques (egg and larva counting) and DNA metabarcoding of the ITS2 region of rDNA. Three different isolation methods were compared that differed in the volume of starting material and cell lysis method. RESULTS Similar nematode faunas were recovered from all samples using both parasitological and metabarcoding methods, and the approaches were largely congruent. However, metabarcoding assays showed better taxonomic resolution and slightly higher sensitivity than egg and larvae counts. The metabarcoding was not strictly quantitative, but the proportion of target nematode sequences recovered was correlated with the parasitologically determined parasite load. Species detection rates in the metabarcoding assays were maximized using a DNA isolation method that included mechanical cell disruption and maximized the starting material volume. CONCLUSIONS DNA metabarcoding is a promising technique for the non-invasive, large-scale monitoring of parasitic GINs in wild ungulate populations, owing to its high taxonomic resolution, increased assay sensitivity, and time- and cost-effectiveness. Although metabarcoding is not a strictly quantitative method, it may nonetheless be possible to create a management- and conservation-relevant index for the host parasite load from this data. To optimize the detection rates and time- and cost-effectiveness of metabarcoding assays, we recommend choosing a DNA isolation method that involves mechanical cell disruption and maximizes the starting material volume.
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Affiliation(s)
- Marie L. Davey
- grid.420127.20000 0001 2107 519XNorwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - Stefaniya Kamenova
- grid.5510.10000 0004 1936 8921University of Oslo, Oslo, Norway ,grid.19477.3c0000 0004 0607 975XNorwegian University of Life Sciences, Ås, Norway
| | - Frode Fossøy
- grid.420127.20000 0001 2107 519XNorwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - Erling J. Solberg
- grid.420127.20000 0001 2107 519XNorwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - Rebecca Davidson
- grid.410549.d0000 0000 9542 2193Norwegian Veterinary Institute, Tromsø, Norway
| | - Atle Mysterud
- grid.420127.20000 0001 2107 519XNorwegian Institute for Nature Research (NINA), Trondheim, Norway ,grid.5510.10000 0004 1936 8921University of Oslo, Oslo, Norway
| | - Christer M. Rolandsen
- grid.420127.20000 0001 2107 519XNorwegian Institute for Nature Research (NINA), Trondheim, Norway
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13
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Khanyari M, Robinson S, Milner-Gulland EJ, Morgan ER, Rana RS, Suryawanshi KR. Pastoralism in the high Himalayas: Understanding changing practices and their implications for parasite transmission between livestock and wildlife. PASTORALISM 2022. [DOI: 10.1186/s13570-022-00257-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
AbstractRangelands are increasingly being affected by climatic variations, fragmentation and changes in livestock management practices. Along with resource competition between livestock and wildlife, disease transmission has implications for people and wildlife in these shared landscapes. We worked with two pastoral communities in the Western Indian Himalayas: the migratory Kinnauras that travel to the Trans-Himalayan Pin valley in summer and the resident herders of Pin Valley. Asiatic ibex (Capra sibirica) is the predominant wild herbivore in Pin. The pastures in Pin are grazed by both livestock (migratory and resident) and ibex, with the potential for disease transmission. We investigate the effects of herding practices on livestock health and disease transmission, while focusing on gastro-intestinal nematodes (GINs) as they can spread by sharing pasture between wild and domestic ungulates. Surveys were carried out between June and August 2019, the period when migratory Kinnauras, local herders and Asiatic Ibex are found in Pin Valley. We found that the Kinnaura flocks share pasture with ibex during their time in Pin, exhibiting significantly higher endo-parasite burdens than sedentary livestock, and the Kinnaura flocks are increasing in number. This suggests GIN cross-transmission is possible, as GINs have low host specificity and a free-living, environmental stage that is trophically acquired. As local (sedentary) sheep and goats rarely share pasture with ibex, have low endo-parasite burdens and are few in number, they are unlikely to transmit parasites to ibex. However, increasingly large local stock numbers may be contributing to pasture degradation which could cause nutritional stress and resource competition, exacerbating GIN impacts. We also find evidence for transhumance persisting, in spite of signs of pasture degradation that are seemingly affecting livestock productivity and potentially disease transmission. It is critical that proactive measures are taken, like participatory disease management with the Kinnauras, to align livelihoods with wildlife and rangeland conservation.
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Beaumelle C, Redman E, Verheyden H, Jacquiet P, Bégoc N, Veyssière F, Benabed S, Cargnelutti B, Lourtet B, Poirel MT, de Rijke J, Yannic G, Gilleard JS, Bourgoin G. Generalist nematodes dominate the nemabiome of roe deer in sympatry with sheep at a regional level. Int J Parasitol 2022; 52:751-761. [PMID: 36183847 DOI: 10.1016/j.ijpara.2022.07.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/19/2022] [Accepted: 07/19/2022] [Indexed: 12/26/2022]
Abstract
The growth of livestock farming and the recent expansion of wild ungulate populations in Europe favor opportunities for direct and/or indirect cross-transmission of pathogens. Comparatively few studies have investigated the epidemiology of gastro-intestinal nematode parasites, an ubiquitous and important community of parasites of ungulates, at the wildlife/livestock interface. In this study, we aimed to assess the influence of livestock proximity on the gastrointestinal nematode community of roe deer in a rural landscape located in southern France. Using ITS-2 rDNA nemabiome metabarcoding on fecal larvae, we analysed the gastrointestinal nematode communities of roe deer and sheep. In addition, we investigated Haemonchus contortus nad4 mtDNA diversity to specifically test parasite circulation among domestic and wild host populations. The dominant gastrointestinal nematode species found in both the roe deer and sheep were generalist species commonly found in small ruminant livestock (e.g. H. contortus), whereas the more specialised wild cervid nematode species (e.g. Ostertagia leptospicularis) were only present at low frequencies. This is in marked contrast with previous studies that found the nemabiomes of wild cervid populations to be dominated by cervid specialist nematode species. In addition, the lack of genetic structure of the nad4 mtDNA of H. contortus populations between host species suggests circulation of gastrointestinal nematodes between roe deer and sheep. The risk of contact with livestock only has a small influence on the nemabiome of roe deer, suggesting the parasite population of roe deer has been displaced by generalist livestock parasites due to many decades of sheep farming, not only for deer grazing close to pastures, but also at a larger regional scale. We also observed some seasonal variation in the nemabiome composition of roe deer. Overall, our results demonstrate significant exchange of gastrointestinal nematodes between domestic and wild ungulates, with generalist species spilling over from domestic ungulates dominating wild cervid parasite communities.
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Affiliation(s)
- Camille Beaumelle
- Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, F-69100 Villeurbanne, France; Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, F-69280 Marcy l'Etoile, France; Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 38000 Grenoble, France.
| | - Elizabeth Redman
- Faculty of Veterinary Medicine, Host-Parasite Interactions Program (HPI) University of Calgary, Calgary, Alberta, Canada
| | - Hélène Verheyden
- Université de Toulouse, INRAE, Comportement et Ecologie de la Faune Sauvage, F-31326 Castanet-Tolosan, France; LTSER ZA PYRénées GARonne, F-31326 Auzeville-Tolosane, France
| | - Philippe Jacquiet
- Université de Toulouse, UMT Pilotage de la Santé des Ruminants, Ecole Nationale Vétérinaire de Toulouse, France
| | - Noémie Bégoc
- Université de Toulouse, UMT Pilotage de la Santé des Ruminants, Ecole Nationale Vétérinaire de Toulouse, France
| | - Florence Veyssière
- Université de Toulouse, UMT Pilotage de la Santé des Ruminants, Ecole Nationale Vétérinaire de Toulouse, France
| | - Slimania Benabed
- Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, F-69100 Villeurbanne, France; Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, F-69280 Marcy l'Etoile, France
| | - Bruno Cargnelutti
- Université de Toulouse, INRAE, Comportement et Ecologie de la Faune Sauvage, F-31326 Castanet-Tolosan, France; LTSER ZA PYRénées GARonne, F-31326 Auzeville-Tolosane, France
| | - Bruno Lourtet
- Université de Toulouse, INRAE, Comportement et Ecologie de la Faune Sauvage, F-31326 Castanet-Tolosan, France; LTSER ZA PYRénées GARonne, F-31326 Auzeville-Tolosane, France
| | - Marie-Thérèse Poirel
- Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, F-69100 Villeurbanne, France; Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, F-69280 Marcy l'Etoile, France
| | - Jill de Rijke
- Faculty of Veterinary Medicine, Host-Parasite Interactions Program (HPI) University of Calgary, Calgary, Alberta, Canada
| | - Glenn Yannic
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 38000 Grenoble, France
| | - John S Gilleard
- Faculty of Veterinary Medicine, Host-Parasite Interactions Program (HPI) University of Calgary, Calgary, Alberta, Canada.
| | - Gilles Bourgoin
- Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, F-69100 Villeurbanne, France; Université de Lyon, VetAgro Sup, Campus Vétérinaire de Lyon, F-69280 Marcy l'Etoile, France
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15
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Halvarsson P, Baltrušis P, Kjellander P, Höglund J. Parasitic strongyle nemabiome communities in wild ruminants in Sweden. Parasit Vectors 2022; 15:341. [PMID: 36167594 PMCID: PMC9516825 DOI: 10.1186/s13071-022-05449-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 08/26/2022] [Indexed: 11/10/2022] Open
Abstract
Background Wildlife hosts may serve as reservoirs for strongyles, which can be transmitted to domestic livestock. Therefore, studies evaluating nemabiome compositions in wildlife ruminants are of great use in assessing the possibility of transmission of important nematode pathogens to domestic sheep in Sweden. Methods First, fecal samples were collected from roe deer (n = 125), fallow deer (n = 106), red deer (n = 18) and mouflon (n = 13) in south central Sweden during the hunting season in 2019. Second, after fecal examination samples were cultured and the larvae were harvested, followed by DNA extractions. Third, all samples were barcoded and processed for sequence analysis on the PacBio platform. Finally, bioinformatic sequence analysis was conducted with DADA2, while species diversity and richness, as well as interactions between the different hosts, were calculated and analyzed in R. Results Nematode ITS2 sequences were found in 225 of 262 (86%) samples. In total, 31 taxa were identified, among which 26 (86%) to the species level. These were found in different combinations, among which 24 (77%) occurred in roe deer, 19 (61%) in fallow deer, 20 (65%) in red deer and 10 (32%) in mouflon. Five of the species found are known to be associated with livestock (Chabertia ovina, Haemonchus contortus, Oesophagostomum venulosum, Teladorsagia circumcincta and Trichostrongylus axei). However, in the present study the relative abundance and prevalence of most of these species were low. The most striking exception was T. axei, which was relatively abundant in all wildlife hosts. Mostly a wide range of wildlife specific nematodes such as Ostertagia leptospicularis and Spiculopteragia spp. were identified including the invasive nematode Spiculopteragia houdemeri, which was found for the first time in red deer, fallow deer, and mouflon in Sweden. The difference in the number of shared species between mouflon and all cervids (n = 6) was less than among all three cervids (n = 8). Conclusion In this study, we investigated the community structure of parasitic intestinal nematodes in four wildlife hosts, and we found that the majority of the parasite species identified were wildlife specific. We also found a new, potentially invasive species not reported before. After comparing the nemabiome of the wildlife hosts in this study with a previous study in sheep from the same geographical region, we conclude that the horizontal transmission potential appears to be relatively low. Still, cross-infections of nematodes between game and sheep cannot be completely ignored. Graphical Abstract ![]()
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Affiliation(s)
- Peter Halvarsson
- Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, 7036, 750 05, Uppsala, Sweden.
| | - Paulius Baltrušis
- Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, 7036, 750 05, Uppsala, Sweden
| | - Petter Kjellander
- Department of Ecology, Swedish University of Agricultural Sciences, Grimsö Wildlife Research Station, 739 93, Riddarhyttan, Sweden
| | - Johan Höglund
- Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, 7036, 750 05, Uppsala, Sweden
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16
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Rinaldi L, Krücken J, Martinez-Valladares M, Pepe P, Maurelli MP, de Queiroz C, Castilla Gómez de Agüero V, Wang T, Cringoli G, Charlier J, Gilleard JS, von Samson-Himmelstjerna G. Advances in diagnosis of gastrointestinal nematodes in livestock and companion animals. ADVANCES IN PARASITOLOGY 2022; 118:85-176. [PMID: 36088084 DOI: 10.1016/bs.apar.2022.07.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Diagnosis of gastrointestinal nematodes in livestock and companion animals has been neglected for years and there has been an historical underinvestment in the development and improvement of diagnostic tools, undermining the undoubted utility of surveillance and control programmes. However, a new impetus by the scientific community and the quickening pace of technological innovations, are promoting a renaissance of interest in developing diagnostic capacity for nematode infections in veterinary parasitology. A cross-cutting priority for diagnostic tools is the development of pen-side tests and associated decision support tools that rapidly inform on the levels of infection and morbidity. This includes development of scalable, parasite detection using artificial intelligence for automated counting of parasitic elements and research towards establishing biomarkers using innovative molecular and proteomic methods. The aim of this review is to assess the state-of-the-art in the diagnosis of helminth infections in livestock and companion animals and presents the current advances of diagnostic methods for intestinal parasites harnessing (i) automated methods for copromicroscopy based on artificial intelligence, (ii) immunodiagnosis, and (iii) molecular- and proteome-based approaches. Regardless of the method used, multiple factors need to be considered before diagnostics test results can be interpreted in terms of control decisions. Guidelines on how to apply diagnostics and how to interpret test results in different animal species are increasingly requested and some were recently made available in veterinary parasitology for the different domestic species.
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Affiliation(s)
- Laura Rinaldi
- Department of Veterinary Medicine and Animal Production, University of Naples "Federico II", Naples, Italy.
| | - J Krücken
- Institute for Parasitology and Tropical Veterinary Medicine, Veterinary Centre for Resistance Research, Freie Universität Berlin, Berlin, Germany
| | - M Martinez-Valladares
- Instituto de Ganadería de Montaña (CSIC-Universidad de León), Departamento de Sanidad Animal, Facultad de Veterinaria, Universidad de León, León, Spain
| | - P Pepe
- Department of Veterinary Medicine and Animal Production, University of Naples "Federico II", Naples, Italy
| | - M P Maurelli
- Department of Veterinary Medicine and Animal Production, University of Naples "Federico II", Naples, Italy
| | - C de Queiroz
- Faculty of Veterinary Medicine, 3331 Hospital Drive, Host-Parasite Interactions (HPI) Program University of Calgary, Calgary, Alberta, Canada; Faculty of Veterinary Medicine, St Georges University, Grenada
| | - V Castilla Gómez de Agüero
- Instituto de Ganadería de Montaña (CSIC-Universidad de León), Departamento de Sanidad Animal, Facultad de Veterinaria, Universidad de León, León, Spain
| | - T Wang
- Kreavet, Kruibeke, Belgium
| | - Giuseppe Cringoli
- Department of Veterinary Medicine and Animal Production, University of Naples "Federico II", Naples, Italy
| | | | - J S Gilleard
- Faculty of Veterinary Medicine, 3331 Hospital Drive, Host-Parasite Interactions (HPI) Program University of Calgary, Calgary, Alberta, Canada
| | - G von Samson-Himmelstjerna
- Institute for Parasitology and Tropical Veterinary Medicine, Veterinary Centre for Resistance Research, Freie Universität Berlin, Berlin, Germany
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17
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Brown TL, Airs PM, Porter S, Caplat P, Morgan ER. Understanding the role of wild ruminants in anthelmintic resistance in livestock. Biol Lett 2022; 18:20220057. [PMID: 35506237 PMCID: PMC9065971 DOI: 10.1098/rsbl.2022.0057] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Wild ruminants are susceptible to infection from generalist helminth species, which can also infect domestic ruminants. A better understanding is required of the conditions under which wild ruminants can act as a source of helminths (including anthelmintic-resistant genotypes) for domestic ruminants, and vice versa, with the added possibility that wildlife could act as refugia for drug-susceptible genotypes and hence buffer the spread and development of resistance. Helminth infections cause significant productivity losses in domestic ruminants and a growing resistance to all classes of anthelmintic drug escalates concerns around helminth infection in the livestock industry. Previous research demonstrates that drug-resistant strains of the pathogenic nematode Haemonchus contortus can be transmitted between wild and domestic ruminants, and that gastro-intestinal nematode infections are more intense in wild ruminants within areas of high livestock density. In this article, the factors likely to influence the role of wild ruminants in helminth infections and anthelmintic resistance in livestock are considered, including host population movement across heterogeneous landscapes, and the effects of climate and environment on parasite dynamics. Methods of predicting and validating suspected drivers of helminth transmission in this context are considered based on advances in predictive modelling and molecular tools.
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Affiliation(s)
- Tony L Brown
- School of Biological Sciences, Queen's University Belfast, Belfast, UK.,Veterinary Sciences Division, Agri-food and Biosciences Institute, Belfast, UK
| | - Paul M Airs
- School of Biological Sciences, Queen's University Belfast, Belfast, UK
| | - Siobhán Porter
- Veterinary Sciences Division, Agri-food and Biosciences Institute, Belfast, UK
| | - Paul Caplat
- School of Biological Sciences, Queen's University Belfast, Belfast, UK.,Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Eric R Morgan
- School of Biological Sciences, Queen's University Belfast, Belfast, UK.,Institute for Global Food Security, Queen's University Belfast, Belfast, UK
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18
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Seasonal prevalence of gastrointestinal parasites in desert bighorn sheep ( Ovis canadensis) in northern Mexico. J Helminthol 2022; 96:e26. [DOI: 10.1017/s0022149x22000207] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Abstract
This study aimed to describe the shedding pattern of gastrointestinal parasite eggs by a wild population of desert bighorn sheep (DBS; Ovis canadensis) in northern Mexico. Seventy-five fresh faecal samples were collected from the ground in each season within an hour after being expelled by these animals. The generalized linear mixed model showed that eggs per gram of faeces were highest in winter (577 ± 399) and lowest in summer (260 ± 198). Generalized linear models revealed that Strongyloides spp. predominated during most seasons with a peak in summer (85% of faecal samples analysed) and the absence of this helminth in winter. Nematodirus spp. was another helminth present in three seasons, with the presence of this nematode in 35% of the faecal samples in spring and 0% in summer. Other parasites in DBS faeces included Bunostomun spp., Trichostrongylus spp., Cooperia spp., Mecistocirrus digitatus, Haemonchus contortus, Chabertia ovina and Eimeria ovinoidalis. There were differences among seasons in the percentage of these helminths and coccidia in faecal samples for all these parasites. It was concluded that helminths egg output in DBS in a semi-arid rangeland is lowest in summer and spring and highest in autumn and winter. Furthermore, it was shown that DBS in the study site do not suffer from severe parasite burden. Therefore, this nematode parasite burden is compatible with the conservation and well-being of this particular population.
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Papaiakovou M, Littlewood DTJ, Doyle SR, Gasser RB, Cantacessi C. Worms and bugs of the gut: the search for diagnostic signatures using barcoding, and metagenomics-metabolomics. Parasit Vectors 2022; 15:118. [PMID: 35365192 PMCID: PMC8973539 DOI: 10.1186/s13071-022-05225-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 02/25/2022] [Indexed: 02/07/2023] Open
Abstract
Gastrointestinal (GI) helminth infections cause significant morbidity in both humans and animals worldwide. Specific and sensitive diagnosis is central to the surveillance of such infections and to determine the effectiveness of treatment strategies used to control them. In this article, we: (i) assess the strengths and limitations of existing methods applied to the diagnosis of GI helminth infections of humans and livestock; (ii) examine high-throughput sequencing approaches, such as targeted molecular barcoding and shotgun sequencing, as tools to define the taxonomic composition of helminth infections; and (iii) discuss the current understanding of the interactions between helminths and microbiota in the host gut. Stool-based diagnostics are likely to serve as an important tool well into the future; improved diagnostics of helminths and their environment in the gut may assist the identification of biomarkers with the potential to define the health/disease status of individuals and populations, and to identify existing or emerging anthelmintic resistance.
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Affiliation(s)
- Marina Papaiakovou
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES UK
- Department of Life Sciences, Natural History Museum, Cromwell Road, London, SW7 5BD UK
| | | | | | - Robin B. Gasser
- Melbourne Veterinary School, The University of Melbourne, Parkville, VIC 3010 Australia
| | - Cinzia Cantacessi
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES UK
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20
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Beaumelle C, Redman EM, de Rijke J, Wit J, Benabed S, Debias F, Duhayer J, Pardonnet S, Poirel MT, Capron G, Chabot S, Rey B, Yannic G, Gilleard JS, Bourgoin G. Metabarcoding in two isolated populations of wild roe deer (Capreolus capreolus) reveals variation in gastrointestinal nematode community composition between regions and among age classes. Parasit Vectors 2021; 14:594. [PMID: 34863264 PMCID: PMC8642965 DOI: 10.1186/s13071-021-05087-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 11/08/2021] [Indexed: 01/04/2023] Open
Abstract
Background Gastrointestinal nematodes are ubiquitous for both domestic and wild ungulates and have varying consequences for health and fitness. They exist as complex communities of multiple co-infecting species, and we have a limited understanding of how these communities vary in different hosts, regions and circumstances or of how this affects their impacts. Methods We have undertaken ITS2 rDNA nemabiome metabarcoding with next-generation sequencing on populations of nematode larvae isolated from 149 fecal samples of roe deer of different sex and age classes in the two isolated populations of Chizé and Trois Fontaines in France not co-grazing with any domestic ungulate species. Results We identified 100 amplified sequence variants (ASVs) that were assigned to 14 gastrointestinal nematode taxa overall at either genus (29%) or species (71%) level. These taxa were dominated by parasites classically found in cervids—e.g. Ostertagia leptospicularis, Spiculopteragia spp. Higher parasite species diversity was present in the Trois Fontaines population than in the Chizé population including the presence of species more typically seen in domestic livestock (Haemonchus contortus, Bunostomum sp., Cooperia punctata, Teladorsagia circumcincta). No differences in parasite species diversity or community composition were seen in the samples collected from three zones of differing habitat quality within the Chizé study area. Young roe deer hosted the highest diversity of gastrointestinal nematodes, with more pronounced effects of age apparent in Trois Fontaines. The effect of host age differed between gastrointestinal nematode species, e.g. there was little effect on O. leptospicularis but a large effect on Trichostrongylus spp. No effect of host sex was detected in either site. Conclusions The presence of some livestock parasite species in the Trois Fontaines roe deer population was unexpected given the isolation of this population away from grazing domestic livestock since decades. Overall, our results illustrate the influence of host traits and the local environment on roe deer nemabiome and demonstrate the power of the nemabiome metabarcoding approach to elucidate the composition of gastrointestinal nematode communities in wildlife. Graphical Abstract ![]()
Supplementary Information The online version contains supplementary material available at 10.1186/s13071-021-05087-5.
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Affiliation(s)
- Camille Beaumelle
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France. .,Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 38000, Grenoble, France.
| | - Elizabeth M Redman
- Comparative Biology and Experimental Medicine, Host-Parasites Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada
| | - Jill de Rijke
- Comparative Biology and Experimental Medicine, Host-Parasites Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada
| | - Janneke Wit
- Comparative Biology and Experimental Medicine, Host-Parasites Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada
| | - Slimania Benabed
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France.,VetAgro Sup, Campus Vétérinaire de Lyon, Université de Lyon, 69280, Marcy l'Etoile, France
| | - François Debias
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France
| | - Jeanne Duhayer
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France
| | - Sylvia Pardonnet
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France
| | - Marie-Thérèse Poirel
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France.,VetAgro Sup, Campus Vétérinaire de Lyon, Université de Lyon, 69280, Marcy l'Etoile, France
| | - Gilles Capron
- Office Français de la Biodiversité, 75008, Paris, France
| | | | - Benjamin Rey
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France
| | - Glenn Yannic
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, 38000, Grenoble, France
| | - John S Gilleard
- Comparative Biology and Experimental Medicine, Host-Parasites Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, AB, Canada
| | - Gilles Bourgoin
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Université de Lyon, 69100, Villeurbanne, France.,VetAgro Sup, Campus Vétérinaire de Lyon, Université de Lyon, 69280, Marcy l'Etoile, France
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21
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Zarlenga D, Barone C, Hebert D, Santin-Duran M, Newcomb H. A simple molecular method to identify and quantify genera of gastrointestinal nematodes of cattle. Parasitol Res 2021; 120:3979-3986. [PMID: 34647169 DOI: 10.1007/s00436-021-07340-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 10/01/2021] [Indexed: 11/30/2022]
Abstract
Classic approaches for antemortem identification of gastrointestinal nematodes (GIN) require coproculture of eggs and morphological examination. While adequate for diagnosis, many PCR techniques cannot easily quantify mixed infections without controls and/or standard curves. Herein, we developed a simple and rapid test for differentiating and quantifying mixed infections of GIN using PCR products separated by capillary electrophoresis. Among the cattle GIN, the ITS2 region is sufficiently distinct in length to delineate among the most common infecting genera, Ostertagia ostertagi = 373 bases (b), Haemonchus contortus (placei) = 366b, Cooperia punctata (oncophora) = 376b, Trichostrongylus axei = 372b, and Oesophagostomum radiatum = 357b. Conserved primers were synthesized that span the ITS2 where one primer was fluorescently labeled with 6-FAM. DNAs from infective L3 were PCR amplified then loaded onto an ABI 3130 sequencer adapted for size fragment analysis. Resulting peak amplitudes were both diagnostic and quantitative on a relative basis. As proof of principle, quantification was performed on PCR fragments from mixed species pairs of Ostertagia ostertagi, Cooperia punctata, and Haemonchus contortus and analyzed using Gene Marker V1.85 software. In all cases, linear responses were observed where R2 > 0.97 and line slopes ranged between 0.90 and 1.1. When tested on eggs from naturally infected animals, the assay showed superior results on two farms when compared to coproculture and morphological identification. Using wildlife-derived samples, results coincided well with deep amplicon sequencing. The assay is adaptable to large-scale studies, does not require comparative PCR controls, and should be compliant with GIN from small ruminant livestock.
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Affiliation(s)
- Dante Zarlenga
- Agricultural Research Service, Animal Parasitic Diseases Lab, B1180 BARC-East, Beltsville, MD, 20705, USA.
| | | | - Deborah Hebert
- Agricultural Research Service, Animal Parasitic Diseases Lab, B1180 BARC-East, Beltsville, MD, 20705, USA
| | - Monica Santin-Duran
- Agricultural Research Service, Environmental Microbial & Food Safety Lab, Beltsville, MD, USA
| | - Harold Newcomb
- Technical Services, Merck Animal Health, Madison, NJ, USA
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22
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Eleftheriou A. Implications for One Health of Anthelmintic Use in Wildlife Conservation Programs. ECOHEALTH 2021; 18:280-282. [PMID: 34601702 DOI: 10.1007/s10393-021-01556-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 08/09/2021] [Accepted: 08/15/2021] [Indexed: 06/13/2023]
Affiliation(s)
- Andreas Eleftheriou
- Wildlife Biology Program, University of Montana, 32 Campus Drive, FOR 109, Missoula, MT, 59812, USA.
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23
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Khanyari M, Robinson S, Morgan ER, Brown T, Singh NJ, Salemgareyev A, Zuther S, Kock R, Milner‐Gulland EJ. Building an ecologically founded disease risk prioritization framework for migratory wildlife species based on contact with livestock. J Appl Ecol 2021. [DOI: 10.1111/1365-2664.13937] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Munib Khanyari
- Department of Biological Sciences University of Bristol Bristol UK
- Interdisciplinary Centre for Conservation Sciences (ICCS) Department of Zoology University of Oxford Oxford UK
- Nature Conservation Foundation Mysore India
| | - Sarah Robinson
- Interdisciplinary Centre for Conservation Sciences (ICCS) Department of Zoology University of Oxford Oxford UK
| | - Eric R. Morgan
- Department of Biological Sciences University of Bristol Bristol UK
- School of Biological Sciences Queen's University Belfast Belfast UK
| | - Tony Brown
- School of Biological Sciences Queen's University Belfast Belfast UK
| | | | - Albert Salemgareyev
- Association for the Conservation of Biodiversity of Kazakhstan Astana Kazakhstan
| | - Steffen Zuther
- Association for the Conservation of Biodiversity of Kazakhstan Astana Kazakhstan
- Frankfurt Zoological Society Frankfurt Germany
| | | | - E. J. Milner‐Gulland
- Interdisciplinary Centre for Conservation Sciences (ICCS) Department of Zoology University of Oxford Oxford UK
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24
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Santa MA, Rezansoff AM, Chen R, Gilleard JS, Musiani M, Ruckstuhl KE, Massolo A. Deep amplicon sequencing highlights low intra-host genetic variability of Echinococcus multilocularis and high prevalence of the European-type haplotypes in coyotes and red foxes in Alberta, Canada. PLoS Negl Trop Dis 2021; 15:e0009428. [PMID: 34038403 PMCID: PMC8153462 DOI: 10.1371/journal.pntd.0009428] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 04/30/2021] [Indexed: 01/04/2023] Open
Abstract
Echinococcus multilocularis (Em) is a zoonotic parasite considered a global emergent pathogen. Recent findings indicate that the parasite is expanding its range in North America and that European-type haplotypes are circulating in western Canada. However, genetic analyses are usually conducted only on a few parasites out of thousands of individuals within each definitive host, likely underestimating the prevalence of less common haplotypes. Moreover, mixed infections with several mtDNA haplotypes in the same host have been reported, but their relative abundance within the host was never estimated. We aimed to 1) estimate the frequency of co-infections of different Em haplotypes in coyotes (Canis latrans) and red foxes (Vulpes vulpes) from western Canada and their relative abundance within the definitive hosts, 2) detect less prevalent haplotypes by sampling a larger proportion of the parasite subpopulation per host, and 3) investigate differences in the distribution of Em haplotypes in these main definitive hosts; foxes and coyotes. We extracted DNA from ~10% of the worm subpopulation per host (20 foxes and 47 coyotes) and used deep amplicon sequencing (NGS technology) on four loci, targeting the most polymorphic regions from the mitochondrial genes cox1 (814 bp), nad1 (344 bp), and cob (387 bp). We detected the presence of mixed infections with multiple Em haplotypes and with different Echinococcus species including Em and E. granulosus s.l. genotypes G8/G10, low intraspecific diversity of Em, and a higher abundance of the European-type haplotypes in both hosts. Our results suggest a population expansion of the European over the North American strain in Alberta and a limited distribution of some European-type haplotypes. Our findings indicate that deep amplicon sequencing represents a valuable tool to characterize Em in multiple hosts, to assess the current distribution and possible origins of the European strain in North America. The potential use of next-generation sequencing technologies is particularly important to understand the patterns of geographic expansion of this parasite.
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Affiliation(s)
- Maria A. Santa
- Biological Sciences Department, Faculty of Science, University of Calgary, Calgary, Alberta, Canada
| | - Andrew M. Rezansoff
- Department of Comparative Biology and Experimental Medicine, Host Parasite Interactions (HPI) program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, Canada
| | - Rebecca Chen
- Department of Comparative Biology and Experimental Medicine, Host Parasite Interactions (HPI) program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, Canada
| | - John S. Gilleard
- Department of Comparative Biology and Experimental Medicine, Host Parasite Interactions (HPI) program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, Canada
| | - Marco Musiani
- Biological Sciences Department, Faculty of Science, University of Calgary, Calgary, Alberta, Canada
| | - Kathreen E. Ruckstuhl
- Biological Sciences Department, Faculty of Science, University of Calgary, Calgary, Alberta, Canada
| | - Alessandro Massolo
- Department of Ecosystem and Public Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, Canada
- Ethology Unit, Department of Biology, University of Pisa, Pisa, Italy
- UMR CNRS 6249 Chrono-environnement, Université Bourgogne Franche-Comté, Besançon, France
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25
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Beleckė A, Kupčinskas T, Stadalienė I, Höglund J, Thamsborg SM, Stuen S, Petkevičius S. Anthelmintic resistance in small ruminants in the Nordic-Baltic region. Acta Vet Scand 2021; 63:18. [PMID: 33906690 PMCID: PMC8085717 DOI: 10.1186/s13028-021-00583-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 04/21/2021] [Indexed: 12/30/2022] Open
Abstract
Gastrointestinal nematodes (GIN) in small ruminants result in production losses, and consequently economic losses, and are an animal welfare problem in most countries in the Nordic-Baltic region. Intensive use of anthelmintics to control helminth infections has led to anthelmintic resistance (AR), which has become a major issue in many European countries. Several studies have been performed in countries in the Nordic-Baltic region (e.g. Denmark, Sweden, Norway and Lithuania) showing increasing/emerging levels of AR. The aim of this paper is to provide an overview of the problem of AR on sheep and goat farms in the Nordic-Baltic region. This region has a limited number of registered anthelmintics. However, researchers in this area have discovered some surprising findings, such as ivermectin (IVM) resistance on a farm that had never used IVM. In Sweden there is evidence of macrocyclic lactone (ML)-resistant Haemonchus contortus being introduced with sheep imported from the Netherlands. As elsewhere in the world, the livestock trade appears to be contributing to the spread of AR in the region and isolated cases of multidrug-resistant cases have also been reported. This is surprising given that the frequency of treatments here is much lower than in other countries where sheep production is economically more important. The prevailing nematodes are Haemonchus, Teledorsagia and Trichostrongylus, while on some farms Haemonchus is dominant and clinical haemonchosis has increasingly been observed in recent decades. The reasons for this are unclear, but are probably related to this parasite's propensity to rapidly develop drug resistance and a general lack of awareness of the problem, possibly in combination with global warming and the increased livestock trade within the EU. In addition, domestic interactions through contacts with wildlife ruminants, alpacas may also be a contributing factor for transmission of AR.
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Affiliation(s)
- Agnė Beleckė
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Laboratory of Parasitology, Lithuanian University of Health Sciences, Tilžės 18, 47181 Kaunas, Lithuania
| | - Tomas Kupčinskas
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Laboratory of Parasitology, Lithuanian University of Health Sciences, Tilžės 18, 47181 Kaunas, Lithuania
| | - Inga Stadalienė
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Laboratory of Parasitology, Lithuanian University of Health Sciences, Tilžės 18, 47181 Kaunas, Lithuania
| | - Johan Höglund
- Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07 Uppsala, Sweden
| | - Stig Milan Thamsborg
- Department of Veterinary and Animal Sciences, Section for Parasitology and Aquatic Pathobiology, University of Copenhagen, Dyrlægevej 100, 1870 Frederiksberg C, Denmark
| | - Snorre Stuen
- Department of Production Animal Clinical Sciences, Norwegian University of Life Sciences, Svebastadveien 112, 4325 Sandnes, Norway
| | - Saulius Petkevičius
- Department of Veterinary Pathobiology, Faculty of Veterinary Medicine, Laboratory of Parasitology, Lithuanian University of Health Sciences, Tilžės 18, 47181 Kaunas, Lithuania
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26
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Wiese JD, Caven AJ, Zarlenga DS, Topliff CL, Kelling CL, Salter J. Gastrointestinal parasites of a reintroduced semi-wild plains bison ( Bison bison bison) herd: Examining effects of demographic variation, deworming treatments, and management strategy. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2021; 14:216-227. [PMID: 33777691 PMCID: PMC7985671 DOI: 10.1016/j.ijppaw.2021.02.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 02/05/2021] [Accepted: 02/06/2021] [Indexed: 11/15/2022]
Abstract
Bison (Bison spp) are being reintroduced into semi-wild, spatially constrained herds across North America and Europe. Herd managers are concerned about gastrointestinal (GI) nematode parasites as they care for the health of their bison. We examine how demographics, grazing location, herd management, and anthelmintic treatments affect the fecal egg counts (FECs) of GI nematodes within a reintroduced Plains bison (Bison bison bison) herd in the Great Plains. Our results suggest that younger bison (<2 years of age) experience higher GI parasite eggs/oocysts per gram (epg/opg) and that some taxa are more prevalent throughout different periods of a bison's early years. Demographic findings suggest that calf and yearling (0–2 yrs age) bison have the highest FECs and that these decline until reaching a low in peak adulthood and thereafter (x > 6 yrs of age). FECs of both Trichuris spp. and particularly Nematodirus spp. were much more abundant, relatively, during the first year of a bison's life. This pattern was also true of Moniezia spp. and Eimeria spp., however, strongyle-type spp. FECs appeared to peak in relative abundance during the second year of life. Our data also indicate that FECs are influenced by differences in land-use histories of pastures previously grazed by cattle or by the proportion of frequent flooding in different pastures. Treatment results suggest that fenbendazole may more effective than moxidectin at lowering FECs of bison over the long-term, and lasting effects of at least one administered anthelmintic treatment. Multiplex PCR assays revealed that American bison share GI nematodes with cattle including: Ostertagia spp., Haemonchus placei, Cooperia onchophora, and Oesophagostomum spp, but did not detect the presence Trichostrongylus columbriformis. Our results may have wider conservation implications for reintroduction efforts of American bison, as well as the endangered European bison (Bison bonasus). Younger plains bison (<2 years of age) are more likely to have higher fecal egg counts of gastrointestinal nematodes. Eimeria spp., Trichuris spp., Moniezia spp., and Nematodirus spp. are more prevalent in plains bison between zero and 1 years of age, while strongyle-type nematodes are more prevalent in bison between 1 and 2 years of age. Both land-use histories and landscape features may influence higher fecal egg counts of gastrointestinal nematodes in plains bison. Plains bison share many of the same type of gastrointestinal parasites found in cattle. Fenbendazole anthelmintic was more effective than moxidectin treatments in reducing fecal egg counts of gastrointestinal parasites in plains bison.
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Affiliation(s)
- Joshua D Wiese
- Platte River Whooping Crane Maintenance Trust, Wood River, NE, 68883, USA
| | - Andrew J Caven
- Platte River Whooping Crane Maintenance Trust, Wood River, NE, 68883, USA
| | - Dante S Zarlenga
- United States Department of Agriculture, Agriculture Research Service, Animal Parasitic Diseases Laboratory, Beltsville, MD, 20705, USA
| | - Christina L Topliff
- School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68583, USA
| | - Clayton L Kelling
- School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68583, USA
| | - Jacob Salter
- Platte River Whooping Crane Maintenance Trust, Wood River, NE, 68883, USA
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Modabbernia G, Meshgi B, Eslami A. Diversity and burden of helminthiasis in wild ruminants in Iran. J Parasit Dis 2020; 45:394-399. [PMID: 34295038 DOI: 10.1007/s12639-020-01314-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 11/03/2020] [Indexed: 11/25/2022] Open
Abstract
This paper aimed to investigate the diversity and burden of helminthiasis in Ovis orientalis (n = 26), Capra aegagrus (n = 29) and Gazella subgutturosa (n = 24) grazed in 37 National Parks in 9 provinces of Iran. The organs and body cavities infected by helminths included gastrointestinal tract, peritoneal cavity, heart, liver and lungs. The contents were extracted and washed under running water and intestinal and lung-isolated nematodes were cleared in lactophenol and subsequently fixed, and cestodes were stained with alum carmine and mounted en face in Berlese's fluid under slight pressure between a microscopic slide and cover slip. The helminth species identified in this study include: intestinal nematodes (Marshallagia marshalli, Teladorsagia circumcincta, Ostertagia ostertagi, Nematodirus oiratianus, Nematodirella longispiculata, Skrjabinema ovis, Trichuris ovis, Trichuris discolor, Parabronema skrjabini), lungworms (Protostrongylus rufescens, Cystocaulus ocreatus), adult cestodes (Moniezia expansa, Helicometra giardi, Avitellina centripunctata, Stilesia globipunctata) and metacestodes (Cysticercus spp., hydatid cyst, Cysticercus tenuicollis). The proportion of the different helminth species ranged from low to moderate (3.45-46.15%) and the intensity of helminth isolation from the different ruminants ranged between 2 and 20. All the taxa identified in our study have been reported in wild animal species around the world. The presence of Cysticercus spp. with cardiac involvement in G. subgutturosa and all helminths of C. aegagrus was reported for the first time in Iran. A significant reduction was observed in worm burden, compared with previous studies in Iran, indicating changes in wildlife host-parasite systems, which can be linked to many reasons including climate changes, public health policies (e.g., strategic anthelmintic use in domestic ruminants), anthropogenic factors and environmental changes (e.g., urbanization or agricultural expansion, physical barriers), as well as vegetation growth and host availability.
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Affiliation(s)
- Galia Modabbernia
- Department of Parasitology, Faculty of Veterinary Medicine, University of Tehran, P.O.Box. 14155-6453, Tehran, Iran
| | - Behnam Meshgi
- Department of Parasitology, Faculty of Veterinary Medicine, University of Tehran, P.O.Box. 14155-6453, Tehran, Iran
| | - Ali Eslami
- Department of Parasitology, Faculty of Veterinary Medicine, University of Tehran, P.O.Box. 14155-6453, Tehran, Iran
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28
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Queiroz C, Levy M, Avramenko R, Redman E, Kearns K, Swain L, Silas H, Uehlinger F, Gilleard JS. The use of ITS-2 rDNA nemabiome metabarcoding to enhance anthelmintic resistance diagnosis and surveillance of ovine gastrointestinal nematodes. INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE 2020; 14:105-117. [PMID: 33027723 PMCID: PMC7548992 DOI: 10.1016/j.ijpddr.2020.09.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 09/16/2020] [Accepted: 09/16/2020] [Indexed: 12/02/2022]
Abstract
A lack of quantitative information on the species composition of parasite communities present in fecal samples is a major limiting factor for the sensitivity, accuracy and interpretation of the diagnostic tests commonly used to assess anthelmintic efficacy and resistance. In this paper, we investigate the ability of ITS-2 rDNA nemabiome metabarcoding to enhance fecal egg count reduction testing by providing information on the effect of drug treatments on individual parasite species. Application of ITS-2 rDNA nemabiome metabarcoding to fecal samples from ewes from over 90 flocks across western Canada revealed high gastrointestinal nematode infection intensities in many flocks with Haemonchus contortus being the most abundant species followed by Teladorsagia circumcincta and then Trichostrongylus colubriformis. Integration of ITS-2 rDNA nemabiome metabarcoding with pre- and post-treatment fecal egg counting revealed consistently poor efficacy of producer-applied ivermectin and benzimidazole treatments against H. contortus, but much better efficacy against T. circumcincta and T. colubriformis, except for in a small number of flocks. Integration of nemabiome ITS-2 rDNA metabarcoding with Fecal Egg Count Reduction Tests (FECRT), undertaken on farm visits, confirmed that ivermectin and fenbendazole resistance is widespread in H. contortus but is currently less common in T. circumcincta and T. colubriformis in western Canada. FECRT/nemabiome testing did not detect moxidectin resistance in any GIN species but suggested the early emergence of levamisole resistance specifically in T. circumcincta. It also revealed that although poor efficacy to closantel was relatively common, based on total fecal egg counts, this was due to its narrow spectrum of activity rather than the emergence of anthelmintic resistance. This study illustrates the value of ITS-2 rDNA nemabiome metabarcoding to improve fecal egg count resistance testing, perform large-scale anthelmintic resistance surveillance and direct more targeted rational anthelmintic use. Nemabiome metabarcoding in anthelmintic resistance diagnostics and surveillance. Producer-applied treatment results were consistent with controlled FECRT. Widespread BZ and IVM resistance in H. contortus in western Canada. Only sporadic BZ and IVM resistance T. circumcincta and T. colubriformis. Early levamisole resistance in T. circumcincta, closantel resistance not prevalent.
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Affiliation(s)
- Camila Queiroz
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Michel Levy
- Department of Production Animal Health, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Russell Avramenko
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Elizabeth Redman
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Kelsey Kearns
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Lana Swain
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Haley Silas
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada
| | - Fabienne Uehlinger
- Department of Large Animal Clinical Sciences, University of Saskatchewan 52 Campus Dr S7N5B4
| | - John S Gilleard
- Department of Comparative Medicine and Experimental Biology, Host-Parasite Interactions Program, Faculty of Veterinary Medicine, University of Calgary, Calgary, Alberta, 3330, Canada Hospital Dr T2N4N1, Canada.
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