Water Table Dynamics and Biogeochemical Cycling in a Shallow, Variably-Saturated Floodplain

Reduction capacity in the transmissive zones fueled by the embedded low-permeability lenses: Implications for contaminant transformation in heterogeneous aquifers

Redox conditions play a decisive role in regulating contaminant and nutrient transformation in groundwater. Here we quantitatively described and interpreted the temporal and spatial variations of aquifer reduction capacity formation in lens-embedded heterogeneous aquifers in 1-D columns. Experimental results indicated that the aquifer reduction capacity exported from the low-permeability lens permeated into the downstream sandy zones, where it subsequently accumulated and extended. Reactive transport modeling suggested that reduction capacity within the lens preferentially diffused to the transmissive zones around the lens-sand interface, and was then transported via convection to downstream transmissive zones. A low-permeability lens of the same volume, but more elongated in the flow direction, led to less concentrated reduction capacity but extended further downgradient from the lens. The increased flow velocity attenuated the maintenance of aquifer reduction capacity by enhancing mixing and diluting processes in the transmissive zones. The reduction zones formed downstream from the low-permeability lens were hotpots for resisting the oxidative perturbation by O2. This study highlights the important role of low-permeability lenses as large and long-term electron pools for the transmissive zones, and thus providing aquifer reduction capacity for contaminant transformation and remediation in heterogeneous aquifers.

Directional long-distance electron transfer from reduced to oxidized zones in the subsurface

Electron transfer (ET) is the fundamental redox process of life and element cycling. The ET distance is normally as short as nanometers or micrometers in the subsurface. However, the redox gradient in the subsurface is as long as centimeters or even meters. This gap triggers an intriguing question whether directional long-distance ET from reduced to oxidized zones exists along the redox gradient. By using electron-donating capacity variation as a proxy of ET, we show that ET can last over 10 cm along the redox gradient in sediment columns, through a directional long-distance ET chain from reduced to oxidized zones constituted by a series of short-distance electron hopping reactions. Microbial and chemical processes synergistically mediate the long-distance ET chain, with an estimated flux of 6.73 μmol e-/cm2 per day. This directional long-distance ET represents an overlooked but important "remote" source of electrons for local biogeochemical and environmental processes.

Trivalent manganese in dissolved forms: Occurrence, speciation, reactivity and environmental geochemical impact

The cycling processes of elemental manganese (Mn), including the redox reactions of dissolved Mn(III) (dMn(III)), directly and indirectly influences the biogeochemical processes of many elements. Though increasing evidence indicates the widespread presence of dMn(III) mediates the fate of many elements, its role may be currently underestimated. There is both a lack of clear understanding of the historical research framework of dMn(III) and a systematic overview of its geochemical properties and detection methods. Therefore, the primary aim of this review is to outline the understanding of dMn(III) in multiple fields, including soil science, analytical chemistry, biochemistry, geochemistry, and water treatment, and summarize the formation pathways, species forms, and detection methods of dMn(III) in aquatic systems. This review considers how the characteristics of dMn(III), the intermediate formed in the single-electron reaction processes of Mn(II) oxidation and Mn(IV) reduction, determines its participation in environmental geochemical processes. Its widespread presence in diverse water systems and active redox properties coupling with various elements confirm its significant role in natural elemental geochemistry cycle and artificial water treatment processes. Therefore, further investigation into the role of dissolved Mn(III) in aquatic systems is warranted to unravel unexplored coupled elemental redox reaction processes mediated by dissolved Mn(III), filling in the gaps in our understanding of manganese environmental geochemistry, and providing a theoretical basis for recognizing the role of dMn(III) role in water treatment technologies.

The response of C/N/S cycling functional microbial communities to redox conditions in shallow aquifers using in-situ sediment as bio-trap matrix

Microbial communities are fundamental components driving critical biogeochemical carbon (C), nitrogen (N) and sulfur (S) cycles in groundwater ecosystems. The reduction-oxidation (redox) potential is one important environmental factor influencing the microbial community composition. Here, we developed a bio-trap method using in-situ sediment as a matrix to collect aquifer sediment samples and evaluate the response of microbial composition and C/N/S cycling functions to redox variations created by providing sole O2, joint O2 and H2, and sole H2 to three wells. Illumina sequencing analyses showed that the microbial communities in the bio-trap sediment could respond quickly to redox changes in the wells, demonstrating that this bio-trap method is promising for detecting microbial variation in the aquifer sediment. The microbial metabolic functions related to C, N and S cyclings and organic pollutants degradation were predicted by the Kyoto Encyclopedia of Genes and Genomes (KEGG) approach. It was found that the joint O2 and H2 injection produced medium oxidation-reduction potential (ORP -346 and -614 mV) and enhanced more microbial functions than sole O2 or H2, which mainly include oxidative phosphorylation, most carbon source metabolism, various pollutants degradation, and nitrogen and sulfur metabolism. Moreover, the functional genes encoding phenol monooxygenase, dioxygenase, nitrogen fixation, nitrification, aerobic and anaerobic nitrate reductase, nitrite reductase, nitric oxide reductase, and sulfur oxidation increased. These findings tell us the contaminant bioremediation and N, S metabolism can be promoted by adjusting ORP realised by injecting joint O2 and H2.

Contaminant mobilization from the vadose zone to groundwater during experimental river flooding events

Natural river flooding events can mobilize contaminants from the vadose zone and lead to increased concentrations in groundwater. Characterizing the mass and transport mechanisms of contaminants released from the vadose zone to groundwater during these recharge events is particularly challenging. Therefore, conducting highly-controlled in-situ experiments that simulate natural flooding events can help increase the knowledge of where contaminants can be stored and how they can move between hydrological compartments. This study specifically targets uranium pollution, which is accompanied by high sulfate levels in the vadose zone and groundwater. Two novel experimental river flooding events were conducted that utilized added non-reactive halides (bromide and iodide) and 2,6-difluorobenzoate tracers. In both experiments, about 8 m3 of traced water from a nearby contaminant-poor river was flooded in a 3-m diameter basin and infiltrated through the vadose zone and into a contaminant-rich unconfined aquifer for an average of 10 days. The aquifer contained 13 temporary wells that were monitored for solute concentration for up to 40 days. The groundwater analysis was conducted for changes in contaminant mass using the Theissen polygon method and for transport mechanisms using temporal moments. The results indicated an increase in uranium (21 and 24%), and sulfate (24 and 25%) contaminant mass transport to groundwater from the vadose zone during both experiments. These findings confirmed that the vadose zone can store and release substantial amounts of contaminants to groundwater during flooding events. Additionally, contaminants were detected earlier than the added tracers, along with higher concentrations. These results suggested that contaminant-rich pore water in the vadose zone was transported ahead of the traced flood waters and into groundwater. During the first flooding event, elevated concentrations of contaminants were sustained, and that chloride behaved similarly. The findings implied that contaminant- and chloride-rich evaporites in the vadose zone were dissolved during the first flooding event. For the second flooding event, the data suggested that the contaminant-rich evaporites continued to dissolve whereas chloride-rich evaporites were previously flushed. Overall, these findings indicated that contaminant-rich pore water and evaporites in the vadose zone can play a significant role in contaminant transport during flooding events.

A Critical Look at Colloid Generation, Stability, and Transport in Redox-Dynamic Environments: Challenges and Perspectives

Colloid generation, stability, and transport are important processes that can significantly influence the fate and transport of nutrients and contaminants in environmental systems. Here, we critically review the existing literature on colloids in redox-dynamic environments and summarize the current state of knowledge regarding the mechanisms of colloid generation and the chemical controls over colloidal behavior in such environments. We also identify critical gaps, such as the lack of universally accepted cross-discipline definition and modeling infrastructure that hamper an in-depth understanding of colloid generation, behavior, and transport potential. We propose to go beyond a size-based operational definition of colloids and consider the functional differences between colloids and dissolved species. We argue that to predict colloidal transport in redox-dynamic environments, more empirical data are needed to parametrize and validate models. We propose that colloids are critical components of element budgets in redox-dynamic systems and must urgently be considered in field as well as lab experiments and reactive transport models. We intend to bring further clarity and openness in reporting colloidal measurements and fate to improve consistency. Additionally, we suggest a methodological toolbox for examining impacts of redox dynamics on colloids in field and lab experiments.

Contaminant transformation during sediment oxygenation: Temporal variation of oxidation mechanisms mediated by hydroxyl radicals and aerobic microbes

Sediment oxidation by oxygen is ubiquitous, whereas the mechanisms of concurrent contaminant oxidation, particularly the temporal variation of chemical and biological oxidation, remain inadequately understood. This study investigated the oxidation of two contaminants (phenol and trichloroethylene) with different responses during the oxygenation of four natural sediments with different redox properties. Results showed that contaminant oxidation was initially dominated by hydroxyl radicals (•OH) (first stage), stabilized for different time for different sediments (second stage), and was re-started by microbial mechanism (third stage). In the first short stage, the contribution of chemical oxidation by •OH was mainly determined by the variation of sediment electron-donating capacity (EDC). In the second long stage, the stabilization time was dependent on sediment redox properties, that is, the abundance and growth of aerobic microbes capable of degrading the target contaminants. A more reduced sediment resulted in a higher extent of oxidation by •OH and a longer stabilization time. When the third stage of aerobic microbial oxidation was started, the contaminants like phenol that can be utilized by microbes can be oxidized quickly and completely, and those refractory contaminants like trichloroethylene remained unchanged. The study differentiates chemical and biological mechanisms for contaminant oxidation during sediment oxygenation.

Modeling evaluation of the impact of residual source material on remedial time frame at a former uranium mill site

Groundwater contamination at legacy uranium processing sites is an ongoing global challenge. Plumes at many uranium-contaminated sites are more persistent than originally predicted by groundwater modeling. Previous investigations of uranium plume persistence identified residual and secondary sources that contribute to plume longevity, but there is a remaining need to revise forecasted cleanup times using information about these ongoing sources. The purpose of this study is to investigate the quantitative impact of residual vadose zone sources of uranium on groundwater remediation time frame. This objective was approached by applying numerical uranium transport simulations and uncertainty analysis to a former uranium mill site in the southwestern United States. Information from recent site investigations provided details about the distribution and release characteristics of uranium accumulations in the vadose zone. The residual uranium characteristics were incorporated as decaying source terms in the transport model. A stochastic approach using an iterative ensemble smoother was applied for history matching, and the transport model was used to assess the impact of multiple remedial alternatives on forecasted time frame. The forecasted time frame to achieve the groundwater remediation goal for uranium by monitored natural attenuation is on the order of thousands of years, and treatment of the dissolved plume does not reduce the projected time frame. The large proportion of residual uranium mass remaining in the vadose zone and the gradual leaching rate due to the site's semiarid climate create a long-lived source that can sustain a dissolved plume for thousands of years despite an estimated 99% mass removal achieved during mill tailings disposal. Residual uranium in vadose zone sediments beneath former tailings impoundments could present comparable uranium plume persistence and remediation challenges at other legacy uranium mill sites in semiarid climates. Other remaining uranium-impacted sites are similarly complex, and forecasted remedial time frames are needed to effectively achieve compliance, manage risk, assess the benefits of additional treatment, manage and project costs, and support beneficial site reuse.

Sources and hydrogeochemical processes of groundwater under multiple water source recharge condition

Ecological water replenishment (EWR) is an essential approach for improving the quantity and quality of regional water. The Chaobai River is a major river in Beijing that is replenished with water from multiple sources, including reclaimed water (RW), the South-North Water Transfer Project (SNTP), reservoir discharge (RD). The effects of multiple water source recharge (MWSR) on groundwater quality remain unclear. In this study, hydrochemical ions, isotopes (δ2H-H2O, δ18O-H2O, δ15N-NO3-, and δ18O-NO3-), mixing stable isotope analysis in R (MixSIAR), and hydrogeochemical modeling were used to quantify the contributions and impacts of different water sources on groundwater and to propose a conceptual model. The results showed that during the period before reservoir discharge, RW and SNTP accounted for 38 %-41 % and 54 % of the groundwater in their corresponding recharge areas, respectively. The groundwater in the RW recharge area contained high levels of Na+ and Cl- leading to the precipitation of halite, and was the main factor for the spatial variation in groundwater hydrochemical components. The surface water changed from Na·K - Cl·SO4 type to Ca·Mg - HCO3 type which was similar to groundwater after reservoir discharge. RD accounted for 30 % of the groundwater; however, it did not change the hydrochemical type of groundwater. Dual nitrate stable isotopes and MixSIAR demonstrated that RW was the primary source of NO3- in groundwater, contributing up to 76-89 %, and reservoir discharge effectively reduced the contribution of RW. δ15N-NO3- or δ18O-NO3- in relation to NO3-N suggests that denitrification is the main biogeochemical process of nitrogen in groundwater, whereas water recharge from the SNTP and RD reduces denitrification and dilutes NO3-. This study provides insights into the impact of anthropogenically controlled ecological water replenishment from different water sources on groundwater and guides the reasonable allocation of water resources.

Consider the Anoxic Microsite: Acknowledging and Appreciating Spatiotemporal Redox Heterogeneity in Soils and Sediments

Reduction-oxidation (redox) reactions underlie essentially all biogeochemical cycles. Like most soil properties and processes, redox is spatiotemporally heterogeneous. However, unlike other soil features, redox heterogeneity has yet to be incorporated into mainstream conceptualizations of soil biogeochemistry. Anoxic microsites, the defining feature of redox heterogeneity in bulk oxic soils and sediments, are zones of oxygen depletion in otherwise oxic environments. In this review, we suggest that anoxic microsites represent a critical component of soil function and that appreciating anoxic microsites promises to advance our understanding of soil and sediment biogeochemistry. In sections 1 and 2, we define anoxic microsites and highlight their dynamic properties, specifically anoxic microsite distribution, redox gradient magnitude, and temporality. In section 3, we describe the influence of anoxic microsites on several key elemental cycles, organic carbon, nitrogen, iron, manganese, and sulfur. In section 4, we evaluate methods for identifying and characterizing anoxic microsites, and in section 5, we highlight past and current approaches to modeling anoxic microsites. Finally, in section 6, we suggest steps for incorporating anoxic microsites and redox heterogeneities more broadly into our understanding of soils and sediments.

Spatiotemporal distribution and controlling factors on ammonium in waters in the central Yangtze River Basin, China

High levels of ammonium in water can compromise the ecological environment and be harmful to human beings. It is of great significance to understand the source and controlling factors of ammonium in waters. However, the distribution and controlling factors on ammonium in the central Yangtze River Basin have been rarely reported. The results showed that 6.58% of the surface water (SW) exceeded the China national guideline of category III for NH4+-N (i.e., 1.0 mg/L) and 30.19% of the groundwater (GW) exceeded the China national guideline of category III for NH4+-N (i.e., 0.5 mg/L). Notably, the ammonium concentrations of the plain area in the middle were much higher, which reached to the highest value at the junction of the Yangtze River and Dongting Lake. Nitrogen in SW may originate from manure but more nitrogen sources in GW. The net anthropogenic nitrogen input (NANI) can provide enough organic nitrogen for the mineralization. NH4+-N in SW was more affected by fertilizer nitrogen and feed nitrogen input but more affected by agricultural nitrogen fixation in GW. Agricultural and industrial activities controlled NH4+-N in SW and GW by increasing nitrogen input and changing hydrological conditions. In general, this research exposed the controlling of different types of factors on ammonium in waters, providing a guidance for the water pollution prevention in study area.

Nitrate with enriched heavy oxygen isotope linked to changes in nitrogen source and transformation as groundwater table rises

Nitrate is a significant constituent of the total nitrogen pool in shallow aquifers and poses an escalating threat to groundwater resources, making it crucial to comprehend the source, conversion, and elimination of nitrogen using appropriate techniques. Although dual-isotope dynamics in nitrate have been widely used, uncertainties remain regarding the asynchronously temporal changes in δ¹⁸O-NO₃^- and δ¹⁵N-NO₃^- observed in hypoxic aquifers. This study aimed to investigate changes in nitrogen sources and transformations using temporal changes in field-based NO₃^- isotopic composition, hydro-chemical variables, and environmental DNA profiling, as the groundwater table varied. The results showed that the larger enrichment in δ¹⁸O-NO₃^- (+13‰) compared with δ¹⁵N-NO₃^- (-2‰) on average during groundwater table rise was due to a combination of factors, including high ¹⁸O-based atmospheric N deposition, canopies nitrification, and soil nitrification transported vertically by rainfalls, and ¹⁸O-enriched O₂ produced through microbial and root respiration within denitrification. The strong association between functional gene abundance and nitrogen-related indicators suggests that anammox was actively processed with nitrification but in small bacterial population during groundwater table rise. Furthermore, bacterial species associated with nitrogen-associated gradients provided insight into subsurface nitrogen transformation, with Burkholderiaceae species and Pseudorhodobacter potentially serving as bioindicators of denitrification, while Candidatus Nitrotogn represents soil nitrification. Fluctuating groundwater tables can cause shifts in hydro-chemical and isotopic composition, which in turn can indicate changes in nitrogen sources and transformations. These changes can be used to improve input sources for mixture models and aid in microbial remediation of nitrate.

Nitrate sink function of riparian zones induced by river stage fluctuations

River stage fluctuation (RSF) induced by tides, dam releases, or storms may lead to enhanced nitrogen cycling (N cycling) in riparian zones (RZ). We conducted a laboratory water table manipulation experiment and applied a multiphase flow and transport model (TOUGHREACT) to investigate the role of RSF in N cycling in the RZ. Coupled nitrification and denitrification occur in the water table fluctuation zone under alternating aerobic and anaerobic conditions. Nitrate removal was enhanced in the saturated and unsaturated zones of the RZ. The net nitrate reduction rate in groundwater increased with the increasing number of RSF, as a result, the cumulative water influx. The RZ nitrate sink function became stronger with increasing RSF amplitude and soil organic matter (SOM) content, and weaker with increasing [NH₄⁺]/[NO₃^-] ratio and mineralization rate. RSF generally creates a hot moment for net nitrate removal in the RZ. However, a hot moment for the nitrate source function might occur if the [NH₄⁺]/[NO₃^-] ratio of groundwater is much greater than 1 and/or if a large pool of nitrate accumulates in the topsoil over a prolonged dry period. The absence of oxygen diffusion in the model would overestimate the nitrate removal capacity of the RZ.

Interaction mechanism between nitrogen conversion and the microbial community in the hydrodynamic heterogeneous interaction zone

To study the inorganic nitrogen in the process of interaction of river and groundwater and the changes in the microbial community, a vertical simulation device was used to simulate groundwater recharge to river water (upwelling) and river water recharge to groundwater (downwelling). The inorganic nitrogen concentrations in the soil and water solution as well as the characteristics of the microbial community were assessed to determine the inorganic nitrogen transformation and microbial community response in the heterogeneous interaction zone under hydrodynamic action, and the interaction mechanism between nitrogen transformation and the microbial community in the interaction zone was revealed. The removal rates of NO₃^--N in the simulated solution reached 99.1% and 99.3% under the two fluid-groundwater conversion modes, and the prolonged hydraulic retention time (HRT) of the oxidization-reduction layer in the fine clay area and the high organic matter content made the inorganic nitrogen transformation process dominated by microorganisms more complete. The denitrification during upwelling, dominated by denitrifying bacteria in Sphingomonas, Pseudomonas, Bacillus, and Arthrobacter, was stronger than that during downwelling. Dissimilatory nitrate reduction to ammonium (DNRA), controlled by some aerobic bacteria in Pseudomonas, Bacillus, and Desulfovibrio, was more intense in downflow mode than upflow mode.

A holistic assessment of spatiotemporal variation, driving factors, and risks influencing river water quality in the northeastern Qinghai-Tibet Plateau

The Qinghai-Tibet Plateau (QTP) is the source for many of the most important rivers in Asia. It is also an essential ecological barrier in China and has the characteristic of regional water conservation. Given this importance, we analyzed the spatiotemporal distribution patterns and trends of 10 water quality parameters. These measurements were taken monthly from 67 monitoring stations in the northeastern QTP from 2015 to 2019. To evaluate water quality trends, major factors influencing water quality, and water quality risks, we used a series of analytical approaches including Mann-Kendall test, Boruta algorithm, and interval fuzzy number-based set-pair analysis (IFN-SPA). The results revealed that almost all water monitoring stations in the northeastern QTP were alkaline. From 2015 to 2019, the water temperature and dissolved oxygen of most monitoring stations were significantly reduced. Chemical oxygen demand, permanganate index, five-day biochemical oxygen demand, total phosphorus, and fluoride all showed a downward trend across this same time frame. The annual average total nitrogen (TN) concentration fluctuation did not significantly decrease across the measured time frame. Water quality index (WQI-DET) indicated bad or poor water quality in the study area; however, water quality index without TN (WQI-DET') reversed the water quality value. The difference between the two indexes suggested that TN was a significant parameter affecting river water quality in the northeastern QTP. Both Spearman correlation and Boruta algorithm show that elevation, urban land, cropland, temperature, and precipitation influence the overall water quality status in the northeastern QTP. The results showed that between 2015 and 2019, most rivers monitored had a relatively low risk of degradation in water quality. This study provides a new perspective on river water quality management, pollutant control, and risk assessment in an area like the QTP that has sensitive and fragile ecology.

Contaminant release, mixing and microbial fluctuations initiated by infiltrating water within a replica field-scale legacy radioactive waste trench

Numerous legacy near-surface radioactive waste sites dating from the mid 20th century have yet to be remediated and present a global contamination concern. Typically, there is insufficient understanding of contaminant release and redistribution, with invasive investigations often impractical due to the risk of disturbing the often significantly radiotoxic contaminants. Consequently, a replica waste trench (~5.4 m³), constructed adjacent to a legacy radioactive waste site (Little Forest Legacy Site, LFLS), was used to assist our understanding of the release and mixing processes of neodymium (Nd) - a chemical analogue for plutonium(III) and americium(III), two significant radionuclides in many contaminated environments. In order to clarify the behaviour of contaminants released from buried objects such as waste containers, a steel drum, representative of the hundreds of buried drums within the LFLS, was placed within the trench. Dissolved neodymium nitrate was introduced as a point-source contaminant to the base of the trench, outside the steel drum. Hydrologic conditions were manipulated to simulate natural rainfall intensities with dissolved lithium bromide added as a tracer. Neodymium was primarily retained both at its point of release at the bottom of the trench (>97 %) as well as at a steel container corrosion point, simulated through the emplacement of steel wool. However, over the 8-month field experiment, advective mixing initiated by surface water intrusions rapidly redistributed a small proportion of Nd to shallower waters (~1.5-1.7 %), as well as throughout the buried steel drum. Suspended particulate forms of Nd (>0.2 μm) were measured at all depths in the suboxic trench and were persistent across the entire study. Analyses of the microbial communities showed that their relative abundances and metabolic functions were strongly influenced by the prevailing geochemical conditions as a result of fluctuating water depths associated with rainfall events. The site representing steel corrosion exhibited divergent biogeochemical results with anomalous changes (sharp decrease) observed in both dissolved contaminant concentration as well as microbial diversity and functionality. This research demonstrates that experimental trenches provide a safe and unique method for simulating the behaviour of subsurface radioactive contaminants with results demonstrating the initial retention, partial shallow water redistribution, and stability of particulate form(s) of this radioactive analogue. These results have relevance for appropriate management and remediation strategies for the adjacent legacy site as well as for similar sites across the globe.

Microbially mediated Fe-N coupled cycling at different hydrological regimes in riparian wetland

Although the significance of the coupled Fe- and N- cycling processes on biogeochemical transformation in riparian wetlands is well-known, the regulation associated with the changes on the microbiotas during different hydrological regimes remains unclear. This study performed field investigations on the bacterial community compositions (BCC) and specific genera associated to Fe- and N- cycling in the rhizosphere soil and sediments in a riparian wetland in Poyang lake, China. The predominant phyla Proteobacteria, Acidobacteria, and Nitrospirae from all the samples remarkably decreased after long-term continuous flooding, while Actinobacteria, Firmicutes and Bacteroidetes were enriched. For the family level, the relative abundances of iron-oxidizing bacteria (FeOB) Gallionellaceae, and N fixing bacteria Nitrospiraceae and Bradyrhizobiaceae significantly declined upon the long-term flooding and then increased with dewatering, which were consistent with the functional genes sequencing analysis. In which, the Bradyrhizobiaceae (RA 2.0 %-34.6 %) was the dominant nirS denitrifier and potential iron-reducing bacteria (FeRB), Sideroxydans lithotrophicus was one of the dominant FeOB (RA 1.7 %-23 %), which was also identified to be the nirS dentrifier (RA 0.2 %-4.3 %). The absolute quantification of the functional genes levels including nirS, nirK, FeRB (Geobacter spp.) showed their significant increases by 3-7 times upon desiccation compared to that under post-CF. The PCA and RDA results indicated the linkage between redox changes of N and Fe during inundation mediated by FeRB, NOB, and FeOB, which were closely related to hydrochemical indices NO₃^-, Fe²⁺ and SO₄^2-. These evidences all implied the likely occurrence of nitrate reduction coupled to Fe(II) oxidation (NRFeOx) under oligotrophic conditions, which was potentially facilitated by metabolizers consisting of highly correlated Bradyrhizobiaceae and Sideroxydans (rho = 0.86, p < 0.01). These findings provide an interpretation of the biological reactions in the microbially mediated NRFeOx processes driven by hydrological change, which could assist the mechanistic understanding of the global biogeochemical cycles of iron and nitrogen in riparian wetlands.

Occurrence Characteristics of Inorganic Nitrogen in Groundwater in Silty-Clay Riparian Hyporheic Zones under Tidal Action: A Case Study of the Jingzi River in Shanghai, China

For comprehending the effect of tidal action on nitrogen cycle in silty-clay riparian hyporheic zones, the synchronous monitoring of water level and water quality was carried out along a test transect during a spring tidal period from 21 to 23 October 2021. Moreover, the permeability and chemical composition of soil samples from drilled holes were measured. Subsequently, the spatiotemporal variation of inorganic nitrogen concentrations in the groundwater in the riparian hyporheic zone was investigated during the study period, and the potential reason was discussed. It is shown that the delayed response time of groundwater level in the silty-clay riparian zone to the tide-driven fluctuation of the river stage increased with distance from the shore and reached 3.0 h at the position 3.83 m away from the shore. The continuous infiltration of the river water under tide action contributed to the aerobic and neutral riparian hyporheic zone conductive to nitrification. Within 4 m away from the bank, the dominant inorganic nitrogen form changed from -N to -N, upon increasing the distance from the bank. Additionally, the removal of nitrogen could occur in the riparian hyporheic zone with aerobic and neutral environment under the conjoint control of nitrification, microbial assimilation, and aerobic denitrification.

Soils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs)

Copper membrane monooxygenases (CuMMOs) play critical roles in the global carbon and nitrogen cycles. Organisms harboring these enzymes perform the first, and rate limiting, step in aerobic oxidation of ammonia, methane, or other simple hydrocarbons. Within archaea, only organisms in the order Nitrososphaerales (Thaumarchaeota) encode CuMMOs, which function exclusively as ammonia monooxygenases. From grassland and hillslope soils and aquifer sediments, we identified 20 genomes from distinct archaeal species encoding divergent CuMMO sequences. These archaea are phylogenetically clustered in a previously unnamed Thermoplasmatota order, herein named the Ca. Angelarchaeales. The CuMMO proteins in Ca. Angelarchaeales are more similar in structure to those in Nitrososphaerales than those of bacteria, and contain all functional residues required for general monooxygenase activity. Ca. Angelarchaeales genomes are significantly enriched in blue copper proteins (BCPs) relative to sibling lineages, including plastocyanin-like electron carriers and divergent nitrite reductase-like (nirK) 2-domain cupredoxin proteins co-located with electron transport machinery. Ca. Angelarchaeales also encode significant capacity for peptide/amino acid uptake and degradation and share numerous electron transport mechanisms with the Nitrososphaerales. Ca. Angelarchaeales are detected at high relative abundance in some of the environments where their genomes originated from. While the exact substrate specificities of the novel CuMMOs identified here have yet to be determined, activity on ammonia is possible given their metabolic and ecological context. The identification of an archaeal CuMMO outside of the Nitrososphaerales significantly expands the known diversity of CuMMO enzymes in archaea and suggests previously unaccounted organisms contribute to critical global nitrogen and/or carbon cycling functions.

Abundant and persistent sulfur-oxidizing microbial populations are responsive to hypoxia in the Chesapeake Bay

The number, size and severity of aquatic low‐oxygen dead zones are increasing worldwide. Microbial processes in low‐oxygen environments have important ecosystem‐level consequences, such as denitrification, greenhouse gas production and acidification. To identify key microbial processes occurring in low‐oxygen bottom waters of the Chesapeake Bay, we sequenced both 16S rRNA genes and shotgun metagenomic libraries to determine the identity, functional potential and spatiotemporal distribution of microbial populations in the water column. Unsupervised clustering algorithms grouped samples into three clusters using water chemistry or microbial communities, with extensive overlap of cluster composition between methods. Clusters were strongly differentiated by temperature, salinity and oxygen. Sulfur‐oxidizing microorganisms were found to be enriched in the low‐oxygen bottom water and predictive of hypoxic conditions. Metagenome‐assembled genomes demonstrate that some of these sulfur‐oxidizing populations are capable of partial denitrification and transcriptionally active in a prior study. These results suggest that microorganisms capable of oxidizing reduced sulfur compounds are a previously unidentified microbial indicator of low oxygen in the Chesapeake Bay and reveal ties between the sulfur, nitrogen and oxygen cycles that could be important to capture when predicting the ecosystem response to remediation efforts or climate change.

Export of Organic Carbon from Reduced Fine-Grained Zones Governs Biogeochemical Reactivity in a Simulated Aquifer

Sediment interfaces in alluvial aquifers have a disproportionately large influence on biogeochemical activity and, therefore, on groundwater quality. Previous work showed that exports from fine-grained, organic-rich zones sustain reducing conditions in downstream coarse-grained aquifers beyond the influence of reduced aqueous products alone. Here, we show that sustained anaerobic activity can be attributed to the export of organic carbon, including live microorganisms, from fine-grained zones. We used a dual-domain column system with ferrihydrite-coated sand and embedded reduced, fine-grained lenses from Slate River (Crested Butte, CO) and Wind River (Riverton, WY) floodplains. After 50 d of groundwater flow, 8.8 ± 0.7% and 14.8 ± 3.1% of the total organic carbon exported from the Slate and Wind River lenses, respectively, had accumulated in the sand downstream. Furthermore, higher concentrations of dissolved Fe(II) and lower concentrations of dissolved organic carbon in the sand compared to total aqueous transport from the lenses suggest that Fe(II) was produced in situ by microbial oxidation of organic carbon coupled to iron reduction. This was further supported by an elevated abundance of 16S rRNA and iron-reducing (gltA) gene copies. These findings suggest that organic carbon transport across interfaces contributes to downstream biogeochemical reactions in natural alluvial aquifers.

The combined effect of short-term hydrological and N-fertilization manipulation of wetlands on CO2, CH4, and N2O emissions

Freshwater wetlands are natural sinks of carbon; yet, wetland conversion for agricultural uses can shift these carbon sinks into large sources of greenhouse gases. We know that the anthropogenic alteration of wetland hydrology and the broad use of N-fertilizers can modify biogeochemical cycling, however, the extent of their combined effect on greenhouse gases exchange still needs further research. Moreover, there has been recent interest in wetlands rehabilitation and preservation by improving natural water flow and by seeking alternative solutions to nutrient inputs. In a microcosm setting, we experimentally exposed soils to three inundation treatments (Inundated, Moist, Drained) and a nutrient treatment by adding high nitrogen load (300 kg ha^-1) to simulate physical and chemical disturbances. After, we measured the depth microprofiles of N₂O and O₂ concentration and CO₂ and CH₄ emission rates to determine how hydrological alteration and nitrogen input affect carbon and nitrogen cycling processes in inland wetland soils. Compared to the Control soils, N-fertilizer increased CO₂ emissions by 40% in Drained conditions and increased CH₄ emissions in Inundated soils over 90%. N₂O emissions from Moist and Inundated soils enriched with nitrogen increased by 17.4 and 18-fold, respectively. Overall, the combination of physical and chemical disturbances increased the Global Warming Potential (GWP) by 7.5-fold. The first response of hydrological rehabilitation, while typically valuable for CO₂ emission reduction, amplified CH₄ and N₂O emissions when combined with high nitrogen inputs. Therefore, this research highlights the importance of evaluating the potential interactive effects of various disturbances on biogeochemical processes when devising rehabilitation plans to rehabilitate degraded wetlands.

Nitrate leaching and NH3 volatilization during soil reclamation in the Yellow River Delta, China

The agricultural ecological system is an important part of the Yellow River Delta (YRD); however, soil reclamation may trigger environmental concerns about nitrate leaching and NH₃ volatilization in this area. To assess nitrogen losses during soil reclamation, a two-year field experiment was conducted with plastic film mulch, which is an effective way to alleviate water-salt stress. The Hydrus-2D software package was used to calculate nitrogen transport, transformation and losses. The results showed that nitrogen (N) retention in the soil varied during the two growing seasons, because soil water, salinity and climatic conditions acted together on nitrogen transport and transformation. Soil salinity promoted NH₃ volatilization, and the proportions of ammonia volatilization were 22.78 percent and 19.50 percent of the N input in 2018 and 2019, respectively, because urea hydrolysis, nitrification and soil NH₄⁺-N adsorption capacity were limited by soil salt. NO₃^--N leaching was controlled by soil water infiltration, climatic conditions and groundwater level. NO₃^--N leaching was 43.84 percent and 32.89 percent of the nitrogen input in 2018 and 2019, respectively; the difference was mainly caused by the different distribution of rainfall during the growing season; thus, soil water infiltration increased under heavy rainfall because it broke the barrier formed by the plough pan. This study indicates that there is a risk of nitrogen pollution during soil reclamation. In addition, Hydrus-2D has considerable potential to calculate nitrogen losses under the effect of plastic film mulch in this area.

Biogeochemical Mobility of Contaminants from a Replica Radioactive Waste Trench in Response to Rainfall-Induced Redox Oscillations

Results of investigations into factors influencing contaminant mobility in a replica trench located adjacent to a legacy radioactive waste site are presented in this study. The trench was filled with nonhazardous iron- and organic matter (OM)-rich components, as well as three contaminant analogues strontium, cesium, and neodymium to examine contaminant behavior. Imposed redox/water-level oscillations, where oxygen-laden rainwater was added to the anoxic trench, resulted in marked biogeochemical changes including the removal of aqueous Fe(II) and circulation of dissolved carbon, along with shifts to microbial communities involved in cycling iron (Gallionella, Sideroxydans) and methane generation (Methylomonas, Methylococcaceae). Contaminant mobility depended upon element speciation and rainfall event intensity. Strontium remained mobile, being readily translocated under hydrological perturbations. Strong ion-exchange reactions and structural incorporation into double-layer clay minerals were likely responsible for greater retention of Cs, which, along with Sr, was unaffected by redox oscillations. Neodymium was initially immobilized within the anoxic trenches, due to either secondary mineral (phosphate) precipitation or via the chemisorption of organic- and carbonate-Nd complexes onto variably charged solid phases. Oxic rainwater intrusions altered Nd mobility via competing effects. Oxidation of Fe(II) led to partial retention of Nd within highly sorbing Fe(III)/OM phases, whereas pH decreases associated with rainwater influxes resulted in a release of adsorbed Nd to solution with both pH and OM presumed to be the key factors controlling Nd attenuation. Collectively, the behavior of simulated contaminants within this replica trench provided unique insights into trench water biogeochemistry and contaminant cycling in a redox oscillatory environment.

Spatial variation of dissolved organic nitrogen in Wuhan surface waters: Correlation with the occurrence of disinfection byproducts during the COVID-19 pandemic

Intensified sanitization practices during the recent coronavirus disease-2019 (COVID-19) led to the release of chlorine-based disinfectants in surface water, potentially triggering the formation of disinfection byproducts (DBPs) in the presence of dissolved organic nitrogen (DON). Thus, a comprehensive investigation of DON's spatial distribution and its association with DBP occurrence in the surface water is urgently needed. In this study, a total of 51 water samples were collected from two rivers and four lakes in May 2020 in Wuhan to explore the regional variation of nitrogen (N) species, DON's compositional characteristics, and the three classes of DBP occurrence. In lakes, 53.0% to 86.3% of N existed as DON, with its concentration varying between 0.3-4.0 mg N/L. In contrast, NO₃^--N was the dominant N species in rivers. Spectral analysis revealed that DON in the lakes contained higher humic and fulvic materials with higher A₂₅₄, A₂₅₃/A_203, SUVA₂₅₄, and P_III+IV/P_I+II+V ratios, while rivers had higher levels of hydrophilic compounds. Trihalomethanes (THMs) were the most prevalent DBPs in the surface waters, followed by N-nitrosamines and haloacetonitriles (HANs). The levels of N-nitrosamines (23.1-97.4 ng/L) increased significantly after the outbreak of the COVID-19 pandemic. Excessive DON in the surface waters was responsible for the formation of N-nitrosamines. This study confirmed that the presence of DON in surface water could result in DBP formation, especially N-nitrosamines, when disinfectants were discharged into surface water during the COVID-19 pandemic.

Temporal flow variations interact with spatial physical heterogeneity to impact solute transport in managed river corridors

The interactions between surface water and groundwater in river corridors lead to temporal fluctuations in subsurface water fluxes which have a critical role on solute transport dynamics. In this work, we develop a framework to analyze the relative impacts of different temporal frequencies of the flow field in a spatially heterogeneous aquifer on solute transport. Our analysis indicates that the advection-dispersion equation behaves as a low-pass filter by wiping out the effect of high-frequency velocity fluctuations on the first two spatial moments of the solute plume, namely its center of mass and spreading. The concepts discussed in the theoretical analysis are then applied to understand solute transport dynamics at the 300 Area of the Hanford site (USA) adjacent to the Columbia River. We examine the temporal behavior of the solute plume's spatial moments for different temporal frequencies utilizing geostatistical parameters estimated in the 300 Area. Due to the proximity to the Columbia river, groundwater fluxes at the Hanford site are highly dynamic resulting in a large range of characteristic temporal frequencies. Nonetheless, similar to the theoretical analysis, our results show that the effect of high-frequency fluctuations is filtered, with most of the solute transport dynamics being controlled by fluctuations characterized by a large characteristic period.

Diverse Thaumarchaeota Dominate Subsurface Ammonia-oxidizing Communities in Semi-arid Floodplains in the Western United States

Subsurface microbial communities mediate biogeochemical transformations that drive both local and ecosystem-level cycling of essential elements, including nitrogen. However, their study has been largely limited to the deep ocean, terrestrial mines, caves, and topsoils (< 30 cm). Here, we present regional insights into the microbial ecology of aerobic ammonia oxidation within the terrestrial subsurface of five semi-arid riparian sites spanning a 900-km N-S transect. We sampled sediments, profiled communities to depths of ≤ 10 m, and compared them to reveal trends regionally within and surrounding the Upper Colorado River Basin (CRB). The diversity and abundance of ammonia-oxidizing microbial communities were evaluated in the context of subsurface geochemistry by applying a combination of amoA (encoding ammonia monooxygenase subunit A) gene sequencing, quantitative PCR, and geochemical techniques. Analysis of 898 amoA sequences from ammonia-oxidizing archaea (AOA) and bacteria (AOB) revealed extensive ecosystem-scale diversity, including archaeal amoA sequences from four of the five major AOA lineages currently found worldwide as well as distinct AOA ecotypes associated with naturally reduced zones (NRZs) and hydrogeochemical zones (unsaturated, capillary fringe, and saturated). Overall, AOA outnumber AOB by 2- to 5000-fold over this regional scale, suggesting that AOA may play a prominent biogeochemical role in nitrification within terrestrial subsurface sediments.

Hydrogeological controls on ammonium enrichment in shallow groundwater in the central Yangtze River Basin

The controlling processes of excessive ammonium in surface water and groundwater in the central Yangtze River Basin remain unclear. In this study, monitoring of water levels and temporal-spatial distributions of major N compounds were implemented at the large Jiangshan plain and at the local site scale in the central Yangtze River Basin. The results indicate that the recharge, movement and transformation of ammonium were controlled by hydrogeological conditions. Manure and sewage from anthropogenic activities were identified as the main source of nitrogen compounds. The nitrogen loading into aquifers were governed by water table and groundwater flow. After entering subsurface soils, nitrification and dissimilatory nitrate reduction to ammonium (DNRA) were proposed as the ammonium consumption and production mechanisms, respectively, by combining the concentrations of ammonium‑nitrogen and nitrate‑nitrogen with the corresponding isotopic compositions. These microbially mediated processes controlling transport and transformation of nitrogen compounds were influenced by the seasonally varying groundwater flow regime that changed the redox conditions in the aquifers. In the subsurface environments, ammonium was converted to nitrate when sufficient oxygen supply was available, and this process was reversed under anoxic conditions along the groundwater flow path. A conceptual model for the reactive transport of nitrogen compounds jointly controlled by the vertical groundwater flows and biogeochemical processes was proposed, which provides new insights into the genesis of high ammonium groundwater.

Microbial and Geochemical Dynamics of an Aquifer Stimulated for Microbial Induced Calcite Precipitation (MICP)

Microbially induced calcite precipitation (MICP) is an alternative to existing soil stabilization techniques for construction and erosion. As with any biologically induced process in soils or aquifers, it is important to track changes in the microbial communities that occur as a result of the treatment. Our research assessed how native microbial communities developed in response to injections of reactants (dilute molasses as a carbon source; urea as a source of nitrogen and alkalinity) that promoted MICP in a shallow aquifer. Microbial community composition (16S rRNA gene) and ureolytic potential (ureC gene copy numbers) were also measured in groundwater and artificial sediment. Aquifer geochemistry showed evidence of sulfate reduction, nitrification, denitrification, ureolysis, and iron reduction during the treatment. The observed changes in geochemistry corresponded to microbial community succession in the groundwater and this matched parallel geophysical and mineralogical evidence of calcite precipitation in the aquifer. We detected an increase in the number of ureC genes in the microbial communities at the end of the injection period, suggesting an increase in the abundance of microbes possessing this gene as needed to hydrolyze urea and stimulate MICP. We identify geochemical and biological markers that highlight the microbial community response that can be used along with geophysical and geotechnical evidence to assess progress of MICP.

Joint response of chemistry and functional microbial community to oxygenation of the reductive confined aquifer

Oxygen can enter into reductive aquifer through natural and artificial processes. However, the joint response of groundwater chemistry and functional microbial communities to oxygenation is not well understood due to the gap between taxonomic and functional microbial composition. Here, two wells named CZK15 and CZK22 at the second confined aquifer in Central China were in situ aerated, and the chemical parameters of groundwater and microbial communities in bio-trapping sand sediment were analysed during aeration. The microbial metabolic functions related to C, N, S, Fe transformation were predicted by Functional Annotation of Prokaryotic Taxa (FAPROTAX) approach and some key functional genes, such as phe, nah, narG, and soxB were verified by the real-time quantitative Polymerase Chain Reaction (qPCR) method. The biomass was promoted, microbial diversity fluctuated, and microbial composition changed remarkably with aeration mainly constrained by reduction-oxidation (redox) variation and SO₄^2- concentration. Among functional microbes, aerobic chemoheterotrophs including aromatic compound degraders (also especially for relative abundance of phe and some nah gene) and methylotrophs are dramatically enriched interpreting dissolved oxygen (DO) consumption and total organic carbon (TOC) decomposing in sediment. Whilst fermenters and methanogen expectedly decreased during aeration. Denitrifying microbes and narG gene relative abundance increased corresponding to the NO₃^- increase after aeration, while microbes for N₂ fixation, ammonification, and nitrification decreased relating to the source of NH₄⁺. The sulfide oxidation causing increased SO₄^2- was reflected by the blooming of sulfur-oxidizing microbes and soxB gene. Some sulfate reducers persisted in sediment after aeration due to sufficient SO₄^2- as substrate. Fe(II) was mainly chemically oxidized as iron-oxidizing microbes were of low abundance and tended to decrease with aeration. The iron-reducing bacteria Geobacteraceae increased with aeration corresponding to the increased Fe(III) oxides formation. The findings of this study could have important implications in understanding the biogeochemical behaviours with cyclic redox conditions.

Influence of Streambed Heterogeneity on Hyporheic Flow and Sorptive Solute Transport

The subsurface region where river water and groundwater actively mix (the hyporheic zone) plays an important role in conservative and reactive solute transport along rivers. Deposits of high-conductivity (K) sediments along rivers can strongly control hyporheic processes by channeling flow along preferential flow paths wherever they intersect the channel boundary. Our goal is to understand how sediment heterogeneity influences conservative and sorptive solute transport within hyporheic zones containing high- and low-K sediment facies types. The sedimentary architecture of high-K facies is modeled using commonly observed characteristics (e.g., volume proportion and mean length), and their spatial connectivity is quantified to evaluate its effect on hyporheic mixing dynamics. Numerical simulations incorporate physical and chemical heterogeneity by representing spatial variability in both K and in the sediment sorption distribution coefficient ( K d ). Sediment heterogeneity significantly enhances hyporheic exchange and skews solute breakthrough behavior, while in homogeneous sediments, interfacial flux and solute transport are instead controlled by geomorphology and local-scale riverbed topographies. The hyporheic zone is compressed in sediments with high sorptive capacity, which limits solute interactions to only a small portion of the sedimentary architecture and thus increases retention. Our results have practical implications for groundwater quality, including remediation strategies for contaminants of emerging concern.

Water Table Fluctuations Regulate Hydrogen Peroxide Production and Distribution in Unconfined Aquifers

Significance of reactive oxygen species (ROS) in subsurface has been increasingly documented in recent years, whereas the mechanisms controlling ROS production and distribution in subsurface remain poorly understood. Here we show that water table fluctuations regulate the dynamics of hydrogen peroxide (H₂O₂) production and distribution in unconfined aquifers. In one hydrological year, we measured the dynamics of H₂O₂ distribution in an unconfined aquifer impacted by a 14 m water level fluctuation in the adjacent Yangtze River. H₂O₂ concentrations in groundwater attained up to 123 nM at rising water table stage in summer, but were low or even below the detection limit at the other stages of stable and falling water table. Lab experiments and kinetic models revealed that abiotic reactions between dissolved O₂ and reduced species (i.e., Fe(II) and organic matter) were responsible for H₂O₂ production in the aquifers. Both field observations and reactive transport models unveiled that a rising water table developed a thermodynamically unstable banded zone in the unconfined aquifer in which elevated coexisting dissolved O₂ and reduced species favored abiotic H₂O₂ production. Our findings provide fundamentals for understanding and predicting ROS distribution in unconfined aquifers, and constrain the significance of ROS in aquifers to specific temporal and spatial domains.

Oxidative Degradation of Organic Contaminants by FeS in the Presence of O2

Reductive transformation of organic contaminants by FeS in anoxic environments has been documented previously, whereas the transformation in oxic environments remains poorly understood. Here we show that phenol can be efficiently oxidized in oxic FeS suspension at circumneutral pH value. We found that hydroxyl radicals (•OH) were the predominant reactive oxidant and that a higher O₂ content accelerated phenol degradation. Phenol oxidation depended on •OH production and utilization efficiency, i.e., phenol degraded per •OH produced. Low FeS contents (≤1 g/L) produced less •OH but higher utilization efficiency, while high contents produced more •OH but lower utilization efficiency. Consequently, the most favorable conditions for phenol oxidation occurred during the long-term interaction between dissolved O₂ and low levels of FeS (i.e., ≤1 g/L). Mössbauer spectroscopy suggests that FeS oxidation to lepidocrocite initially produced an intermediate Fe(II) phase that could be explained by the apparent preferential oxidation of structural S(-II) relative to Fe(II), rendering a higher initial •OH yield upon unit of Fe(II) oxidation. Trichloroethylene can be also oxidized under similar conditions. Our results demonstrate that oxidative degradation of organic contaminants during the oxygenation of FeS can be a significant but currently underestimated pathway in both natural and engineered systems.

Contaminant Degradation by •OH during Sediment Oxygenation: Dependence on Fe(II) Species

It has been documented that contaminants could be degraded by hydroxyl radicals (•OH) produced upon oxygenation of Fe(II)-bearing sediments. However, the dependence of contaminant degradation on sediment characteristics, particularly Fe(II) species, remains elusive. Here we assessed the impact of the abundance of Fe(II) species in sediments on contaminant degradation by •OH during oxygenation. Three natural sediments with different Fe(II) contents and species were oxygenated. During 10 h oxygenation of 200 g/L sediment suspension, 2 mg/L phenol was negligibly degraded for sandbeach sediment (Fe(II): 9.11 mg/g), but was degraded by 41% and 52% for lakeshore (Fe(II): 9.81 mg/g) and farmland (Fe(II): 19.05 mg/g) sediments, respectively. •OH produced from Fe(II) oxygenation was the key reactive oxidant. Sequential extractions, X-ray diffraction, Mössbauer, and X-ray absorption spectroscopy suggest that surface-adsorbed Fe(II) and mineral structural Fe(II) contributed predominantly to •OH production and phenol degradation. Control experiments with specific Fe(II) species and coordination structure analysis collectively suggest the likely rule that Fe(II) oxidation rate and its competition for •OH increase with the increase in electron-donating ability of the atoms (i.e., O) complexed to Fe(II), while the •OH yield decreases accordingly. The Fe(II) species with a moderate oxidation rate and •OH yield is most favorable for contaminant degradation.

Effect of Coexisting Fe(III) (oxyhydr)oxides on Cr(VI) Reduction by Fe(II)-Bearing Clay Minerals

Fe(II)-bearing clay minerals are important electron sources for Cr(VI) reduction in subsurface environments. However, it is not clear how iron (oxyhydr)oxides impact Cr(VI) reduction by Fe(II)-bearing clays as the two minerals can coexist in soil and sediment aggregates. This study investigated Cr(VI) reduction in the mixed suspensions of reduced nontronite NAu-2 (rNAu-2) and ferrihydrite (Fe(II)/Cr(VI) = 3:1). When the mineral premixing time increased from 0 to 72 h, Cr(VI) reduction was accelerated prominently in the initial stage, while Cr(VI) sorption was inhibited drastically. Mineral premixing led to electron transfer from structural Fe(II) in rNAu-2 to ferrihydrite with formation of reactive-surface-associated Fe(II), which catalyzed ferrihydrite transformation to lepidocrocite. Reactive-surface-associated Fe(II) accelerated Cr(VI) reduction initially, and ferrihydrite transformation to lepidocrocite was responsible for the inhibited sorption. When the reactive-surface-associated Fe(II) was consumed in the initial stage, the Cr(VI) reduction rate decreased dramatically due to the limitation of slow electron transfer from structural Fe(II) in rNAu-2 to surface-reactive sites. The main reduction sites shifted from rNAu-2 to ferrihydrite/lepidocrocite when rNAu-2 coexisted with ferrihydrite. Our findings demonstrate that electron transfer between minerals has important implications for Cr(VI) and other high-valence contaminant reduction by Fe(II)-bearing clay minerals in subsurface environments.

High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer

Understanding microbial community structure and function within the subsurface is critical to assessing overall quality and maintenance of groundwater; however, the factors that determine microbial community assembly, structure, and function in groundwater systems and their impact on water quality remains poorly understood. In this study, three shallow wells (FW301, FW303, FW305) in a non-contaminated shallow aquifer in the ENIGMA-Oak Ridge Field Research Center (Oak Ridge, TN) were sampled approximately 3 times a week over a period of three months to measure changes in groundwater geochemistry and microbial diversity. It was expected that the sampled microbial diversity from two historic field wells (FW301, FW303) would be relatively stable, while diversity from a newer well (FW305) would be less stable over time. The wells displayed some degree of hydrochemical variability over time unique to each well, with FW303 being overall the most stable well and FW301 being the most dynamic based upon dissolved oxygen, conductivity, and nitrate. Community analysis via ss-rRNA paired-end sequencing and distribution-based clustering revealed higher OTU richness, diversity, and variability in groundwater communities of FW301 than the other two wells for diversity binned over all time points. Microbial community composition of a given well was on average > 50% dissimilar to any other well at a given time (days), yet, functional gene diversity as measured with GeoChip remained relatively constant. Similarities in community structure across wells were observed with respect to the presence of 20 shared bacterial groups in all samples in all wells, although at varying levels over the tested time period. Similarity percentage (SIMPER) analysis revealed that variability in FW301 was largely attributed to low abundance, highly-transient populations, while variability in the most hydrochemically stable well (FW303) was due to fluctuations in more highly abundant and frequently present taxa. Additionally, the youngest well FW305 showed a dramatic shift in community composition towards the end of the sampling period that was not observed in the other wells, suggesting possible succession events over time. Time-series analysis using vector auto-regressive models and Granger causality showed unique relationships between richness and geochemistry over time in each well. These results indicate temporally dynamic microbial communities over short time scales, with day-to-day population shifts in local community structure influenced by available source community diversity and local groundwater hydrochemistry.

Paired RNA Radiocarbon and Sequencing Analyses Indicate the Importance of Autotrophy in a Shallow Alluvial Aquifer

Determining the carbon sources for active microbial populations in the subsurface is a challenging but highly informative component of subsurface microbial ecology. This work developed a method to provide ecological insights into groundwater microbial communities by characterizing community RNA through its radiocarbon and ribosomal RNA (rRNA) signatures. RNA was chosen as the biomolecule of interest because rRNA constitutes the majority of RNA in prokaryotes, represents recently active organisms, and yields detailed taxonomic information. The method was applied to a groundwater filter collected from a shallow alluvial aquifer in Colorado. RNA was extracted, radiometrically dated, and the 16S rRNA was analyzed by RNA-Seq. The RNA had a radiocarbon signature (Δ14C) of -193.4 ± 5.6‰. Comparison of the RNA radiocarbon signature to those of potential carbon pools in the aquifer indicated that at least 51% of the RNA was derived from autotrophy, in close agreement with the RNA-Seq data, which documented the prevalence of autotrophic taxa, such as Thiobacillus and Gallionellaceae. Overall, this hybrid method for RNA analysis provided cultivation-independent information on the in-situ carbon sources of active subsurface microbes and reinforced the importance of autotrophy and the preferential utilization of dissolved over sedimentary organic matter in alluvial aquifers.

Isotopic Fingerprint of Uranium Accumulation and Redox Cycling in Floodplains of the Upper Colorado River Basin

Uranium (U) groundwater contamination is a major concern at numerous former mining and milling sites across the Upper Colorado River Basin (UCRB), USA, where U(IV)-bearing solids have accumulated within naturally reduced zones (NRZs). Understanding the processes governing U reduction and oxidation within NRZs is critical for assessing the persistence of U in groundwater. To evaluate the redox cycling of uranium, we measured the U concentrations and isotopic compositions (δ²³⁸U) of sediments and pore waters from four study sites across the UCRB that span a gradient in sediment texture and composition. We observe that U accumulation occurs primarily within fine-grained (low-permeability) NRZs that show active redox variations. Low-permeability NRZs display high accumulation and low export of U, with internal redox cycling of U. In contrast, within high-permeability NRZs, U is remobilized under oxidative conditions, possibly without any fractionation, and transported outside the NRZs. The low δ²³⁸U of sediments outside of defined NRZs suggests that these reduced zones act as additional U sources. Collectively, our results indicate that fine-grained NRZs have a greater potential to retain uranium, whereas NRZs with higher permeability may constitute a more-persistent but dilute U source.

Evaluating temporal controls on greenhouse gas (GHG) fluxes in an Arctic tundra environment: An entropy-based approach

There is significant spatial and temporal variability associated with greenhouse gas (GHG) fluxes in high-latitude Arctic tundra environments. The objectives of this study are to investigate temporal variability in CO₂ and CH₄ fluxes at Barrow, AK and to determine the factors causing this variability using a novel entropy-based classification scheme. In particular, we analyzed which geomorphic, soil, vegetation and climatic properties most explained the variability in GHG fluxes (opaque chamber measurements) during the growing season over three successive years. Results indicate that multi-year variability in CO₂ fluxes was primarily associated with soil temperature variability as well as vegetation dynamics during the early and late growing season. Temporal variability in CH₄ fluxes was primarily associated with changes in vegetation during the growing season and its interactions with primary controls like seasonal thaw. Polygonal ground features, which are common to Arctic regions, also demonstrated significant multi-year variability in GHG fluxes. Our results can be used to prioritize field sampling strategies, with an emphasis on measurements collected at locations and times that explain the most variability in GHG fluxes. For example, we found that sampling primary environmental controls at the centers of high centered polygons in the month of September (when freeze-back period begins) can provide significant constraints on GHG flux variability - a requirement for accurately predicting future changes to GHG fluxes. Overall, entropy results document the impact of changing environmental conditions (e.g., warming, growing season length) on GHG fluxes, thus providing clues concerning the manner in which ecosystem properties may be shifted regionally in a future climate.

Transformation of uranium species in soil during redox oscillations

Redox oscillation is commonly found in near-surface environment, where soils are often polluted with many redox active contaminants, including uranium (U). In order to investigate the transformation of U species in near-surface soil under redox oscillations conditions, redox oscillations and reduction experiments were performed, biogeochemical parameters and native microbial community composition were monitored, main elements on the surface of solid-phase were analyzed by XPS, and labile U(IV) species and stable U(IV) species in solid-phase were provisionally defined using an anoxic 1 M sodium bicarbonate extraction. It was found that redox oscillations slightly increased the water-soluble U but significantly increased the stable U(IV) species (P < 0.05) in soil. In reduction experiment, there was upper limit value for percentage of stable U(IV) species, and the labile U(IV) species could not transform to stable U(IV) species in a short period of time under reduction conditions. The redox transition of Fe enriched on the surface of soil and the conversion of microbial community composition played a major role in speciation transformation of U under redox oscillations conditions. In addition, sequential extraction revealed that the increase of stable U(IV) species content reflected the U speciation transition from acetate extract to more recalcitrant hydroxylamine extract. The finding provides a potential method for improving the stability of U when bio-reduction is used to remediate the U-contaminated soils.

Using strontium isotopes to evaluate the spatial variation of groundwater recharge

Recharge of alluvial aquifers is a key component in understanding the interaction between floodplain vadose zone biogeochemistry and groundwater quality. The Rifle Site (a former U-mill tailings site) adjacent to the Colorado River is a well-established field laboratory that has been used for over a decade for the study of biogeochemical processes in the vadose zone and aquifer. This site is considered an exemplar of both a riparian floodplain in a semiarid region and a post-remediation U-tailings site. In this paper we present Sr isotopic data for groundwater and vadose zone porewater samples collected in May and July 2013 to build a mixing model for the fractional contribution of vadose zone porewater (i.e. recharge) to the aquifer and its variation across the site. The vadose zone porewater contribution to the aquifer ranged systematically from 0% to 38% and appears to be controlled largely by the microtopography of the site. The area-weighted average contribution across the site was 8% corresponding to a net recharge of 7.5 cm. Given a groundwater transport time across the site of ~1.5 to 3 years, this translates to a recharge rate between 5 and 2.5 cm/yr, and with the average precipitation to the site implies a loss from the vadose zone due to evapotranspiration of 83% to 92%, both ranges are in good agreement with previously published results by independent methods. A uranium isotopic (²³⁴U/²³⁸U activity ratios) mixing model for groundwater and surface water samples indicates that a ditch across the site is hydraulically connected to the aquifer and locally significantly affects groundwater. Groundwater samples with high U concentrations attributed to natural bio-reduced zones have ²³⁴U/²³⁸U activity ratios near 1, suggesting that the U currently being released to the aquifer originated from the former U-mill tailings.

Uranium Retention in a Bioreduced Region of an Alluvial Aquifer Induced by the Influx of Dissolved Oxygen

Reduced zones in the subsurface represent biogeochemically active hotspots enriched in buried organic matter and reduced metals. Within a shallow alluvial aquifer located near Rifle, CO, reduced zones control the fate and transport of uranium (U). Though an influx of dissolved oxygen (DO) would be expected to mobilize U, we report U immobilization. Groundwater U concentrations decreased following delivery of DO (21.6 mg O₂/well/h). After 23 days of DO delivery, injection of oxygenated groundwater was paused and resulted in the rebound of groundwater U concentrations to preinjection levels. When DO delivery resumed (day 51), groundwater U concentrations again decreased. The injection was halted on day 82 again and resulted in a rebound of groundwater U concentrations. DO delivery rate was increased to 54 mg O₂/well/h (day 95) whereby groundwater U concentrations increased. Planktonic cell abundance remained stable throughout the experiment, but virus-to-microbial cell ratio increased 1.8-3.4-fold with initial DO delivery, indicative of microbial activity in response to DO injection. Together, these results indicate that the redox-buffering capacity of reduced sediments can prevent U mobilization, but could be overcome as delivery rate or oxidant concentration increases, mobilizing U.

Oxidative Uranium Release from Anoxic Sediments under Diffusion-Limited Conditions

Uranium (U) contamination occurs as a result of mining and ore processing; often in alluvial aquifers that contain organic-rich, reduced sediments that accumulate tetravalent U, U(IV). Uranium(IV) is sparingly soluble, but may be mobilized upon exposure to nitrate (NO₃^-) and oxygen (O₂), which become elevated in groundwater due to seasonal fluctuations in the water table. The extent to which oxidative U mobilization can occur depends upon the transport properties of the sediments, the rate of U(IV) oxidation, and the availability of inorganic reductants and organic electron donors that consume oxidants. We investigated the processes governing U release upon exposure of reduced sediments to artificial groundwater containing O₂ or NO₃^- under diffusion-limited conditions. Little U was mobilized during the 85-day reaction, despite rapid diffusion of groundwater within the sediments and the presence of nonuraninite U(IV) species. The production of ferrous iron and sulfide in conjunction with rapid oxidant consumption suggested that the sediments harbored large concentrations of bioavailable organic carbon that fueled anaerobic microbial respiration and stabilized U(IV). Our results suggest that seasonal influxes of O₂ and NO₃^- may cause only localized mobilization of U without leading to export of U from the reducing sediments when ample organic carbon is present.

Deep carbon storage potential of buried floodplain soils

Soils account for the largest terrestrial pool of carbon and have the potential for even greater quantities of carbon sequestration. Typical soil carbon (C) stocks used in global carbon models only account for the upper 1 meter of soil. Previously unaccounted for deep carbon pools (>1 m) were generally considered to provide a negligible input to total C contents and represent less dynamic C pools. Here we assess deep soil C pools associated with an alluvial floodplain ecosystem transitioning from agricultural production to restoration of native vegetation. We analyzed the soil organic carbon (SOC) concentrations of 87 surface soil samples (0–15 cm) and 23 subsurface boreholes (0–3 m). We evaluated the quantitative importance of the burial process in the sequestration of subsurface C and found our subsurface soils (0–3 m) contained considerably more C than typical C stocks of 0–1 m. This deep unaccounted soil C could have considerable implications for global C accounting. We compared differences in surface soil C related to vegetation and land use history and determined that flooding restoration could promote greater C accumulation in surface soils. We conclude deep floodplain soils may store substantial quantities of C and floodplain restoration should promote active C sequestration.