1
|
Chrupková P, van Stokkum IHM, Friedrich T, Moldenhauer M, Budisa N, Tseng HW, Polívka T, Cherepanov DA, Maksimov EG, Kloz M. Raman Vibrational Signatures of Excited States of Echinenone in the Orange Carotenoid Protein (OCP) and Implications for its Photoactivation Mechanism. J Mol Biol 2024:168625. [PMID: 38797429 DOI: 10.1016/j.jmb.2024.168625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 05/09/2024] [Accepted: 05/17/2024] [Indexed: 05/29/2024]
Abstract
In this study, the vibrational characteristics of optically excited echinenone in various solvents and the Orange Carotenoid Protein (OCP) in red and orange states are systematically investigated through steady-state and time-resolved spectroscopy techniques. Time-resolved experiments, employing both Transient Absorption (TA) and Femtosecond Stimulated Raman Spectroscopy (FSRS), reveal different states in the OCP photoactivation process. The time-resolved studies indicate vibrational signatures of exited states positioned above the S1 state during the initial 140 fs of carotenoid evolution in OCP, an absence of a vibrational signature for the relaxed S1 state of echinenone in OCP, and more robust signatures of a highly excited ground state (GS) in OCP. Differences in S1 state vibration population signatures between OCP and solvents are attributed to distinct conformations of echinenone in OCP and hydrogen bonds at the keto group forming a short-lived intramolecular charge transfer (ICT) state. The vibrational dynamics of the hot GS in OCP show a more pronounced red shift of ground state CC vibration compared to echinenone in solvents, thus suggesting an unusually hot form of GS. The study proposes a hypothesis for the photoactivation mechanism of OCP, emphasizing the high level of vibrational excitation in longitudinal stretching modes as a driving force. In conclusion, the comparison of vibrational signatures reveals unique dynamics of energy dissipation in OCP, providing insights into the photoactivation mechanism and highlighting the impact of the protein environment on carotenoid behavior. The study underscores the importance of vibrational analysis in understanding the intricate processes involved in early phase OCP photoactivation.
Collapse
Affiliation(s)
- Petra Chrupková
- The Extreme Light Infrastructure ERIC, ELI Beamlines Facility, Za Radnicí 835, Dolní Břežany, Czech Republic; University of South Bohemia in České Budějovice, Faculty of Science, Branišovská 1760, 370 05 České Budějovice, Czech Republic
| | - Ivo H M van Stokkum
- Vrije Universiteit, Department of Physics and Astronomy, Faculty of Sciences, De Boelelaan 1081, 1081HV Amsterdam, the Netherlands
| | - Thomas Friedrich
- Technische Universität Berlin, Institute of Chemistry PC 14, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Marcus Moldenhauer
- Technische Universität Berlin, Institute of Chemistry PC 14, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Nediljko Budisa
- University of Manitoba, Department of Chemistry, 144 Dysart Rd, 360 Parker Building, Winnipeg, MB R3T 2N2, Canada
| | - Hsueh-Wei Tseng
- University of Manitoba, Department of Chemistry, 144 Dysart Rd, 360 Parker Building, Winnipeg, MB R3T 2N2, Canada
| | - Tomáš Polívka
- University of South Bohemia in České Budějovice, Faculty of Science, Branišovská 1760, 370 05 České Budějovice, Czech Republic
| | - Dmitry A Cherepanov
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, 142432 Moscow, Russian Federation; Lomonosov Moscow State University, A.N. Belozersky Institute of Physical-Chemical Biology, 119991 Moscow, Russian Federation
| | - Eugene G Maksimov
- Lomonosov Moscow State University, Faculty of Biology, Vorobyovy Gory 1-12, Moscow 119991, Russian Federation
| | - Miroslav Kloz
- The Extreme Light Infrastructure ERIC, ELI Beamlines Facility, Za Radnicí 835, Dolní Břežany, Czech Republic.
| |
Collapse
|
2
|
Sauer PV, Cupellini L, Sutter M, Bondanza M, Domínguez Martin MA, Kirst H, Bína D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polívka7 T, Mennucci B, Kerfeld CA. Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes. SCIENCE ADVANCES 2024; 10:eadk7535. [PMID: 38578996 PMCID: PMC10997198 DOI: 10.1126/sciadv.adk7535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 03/04/2024] [Indexed: 04/07/2024]
Abstract
Cyanobacteria use large antenna complexes called phycobilisomes (PBSs) for light harvesting. However, intense light triggers non-photochemical quenching, where the orange carotenoid protein (OCP) binds to PBS, dissipating excess energy as heat. The mechanism of efficiently transferring energy from phycocyanobilins in PBS to canthaxanthin in OCP remains insufficiently understood. Using cryo-electron microscopy, we unveiled the OCP-PBS complex structure at 1.6- to 2.1-angstrom resolution, showcasing its inherent flexibility. Using multiscale quantum chemistry, we disclosed the quenching mechanism. Identifying key protein residues, we clarified how canthaxanthin's transition dipole moment in its lowest-energy dark state becomes large enough for efficient energy transfer from phycocyanobilins. Our energy transfer model offers a detailed understanding of the atomic determinants of light harvesting regulation and antenna architecture in cyanobacteria.
Collapse
Affiliation(s)
- Paul V. Sauer
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
| | - Lorenzo Cupellini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Markus Sutter
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Mattia Bondanza
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - María Agustina Domínguez Martin
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Henning Kirst
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - David Bína
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
| | | | | | - Basil J. Greber
- Division of Structural Biology, The Institute of Cancer Research, London SW7 3RP, UK
| | - Eva Nogales
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA
| | - Tomáš Polívka7
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Faculty of Science, University of South Bohemia, Ceske Budejovice, Czech Republic
- Biology Centre of the Czech Academy of Sciences, Ceske Budejovice, Czech Republic
- Thermo Fisher Scientific, Eindhoven, Netherlands
- Division of Structural Biology, The Institute of Cancer Research, London SW7 3RP, UK
- Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via G. Moruzzi 13, I-56124 Pisa, Italy
| | - Cheryl A. Kerfeld
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA
| |
Collapse
|
3
|
Accomasso D, Londi G, Cupellini L, Mennucci B. The nature of carotenoid S* state and its role in the nonphotochemical quenching of plants. Nat Commun 2024; 15:847. [PMID: 38286840 DOI: 10.1038/s41467-024-45090-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Accepted: 01/15/2024] [Indexed: 01/31/2024] Open
Abstract
In plants, light-harvesting complexes serve as antennas to collect and transfer the absorbed energy to reaction centers, but also regulate energy transport by dissipating the excitation energy of chlorophylls. This process, known as nonphotochemical quenching, seems to be activated by conformational changes within the light-harvesting complex, but the quenching mechanisms remain elusive. Recent spectroscopic measurements suggest the carotenoid S* dark state as the quencher of chlorophylls' excitation. By investigating lutein embedded in different conformations of CP29 (a minor antenna in plants) via nonadiabatic excited state dynamics simulations, we reveal that different conformations of the complex differently stabilize the lutein s-trans conformer with respect to the dominant s-cis one. We show that the s-trans conformer presents the spectroscopic signatures of the S* state and rationalize its ability to accept energy from the closest excited chlorophylls, providing thus a relationship between the complex's conformation and the nonphotochemical quenching.
Collapse
Affiliation(s)
- Davide Accomasso
- Department of Chemistry and Industrial Chemistry, University of Pisa, 56124, Pisa, Italy.
- Faculty of Chemistry, University of Warsaw, 02-093, Warsaw, Poland.
| | - Giacomo Londi
- Department of Chemistry and Industrial Chemistry, University of Pisa, 56124, Pisa, Italy
| | - Lorenzo Cupellini
- Department of Chemistry and Industrial Chemistry, University of Pisa, 56124, Pisa, Italy
| | - Benedetta Mennucci
- Department of Chemistry and Industrial Chemistry, University of Pisa, 56124, Pisa, Italy.
| |
Collapse
|
4
|
Arcidiacono A, Accomasso D, Cupellini L, Mennucci B. How orange carotenoid protein controls the excited state dynamics of canthaxanthin. Chem Sci 2023; 14:11158-11169. [PMID: 37860660 PMCID: PMC10583711 DOI: 10.1039/d3sc02662k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 09/21/2023] [Indexed: 10/21/2023] Open
Abstract
Orange Carotenoid Protein (OCP) is a ketocarotenoid-binding protein essential for photoprotection in cyanobacteria. The main steps of the photoactivated conversion which converts OCP from its resting state to the active one have been extensively investigated. However, the initial photochemical event in the ketocarotenoid which triggers the large structural changes finally leading to the active state is still not understood. Here we employ QM/MM surface hopping nonadiabatic dynamics to investigate the excited-state decay of canthaxanthin in OCP, both in the ultrafast S2 to S1 internal conversion and the slower decay leading back to the ground state. For the former step we show the involvement of an additional excited state, which in the literature has been often named the SX state, and we characterize its nature. For the latter step, we reveal an excited state decay characterized by multiple timescales, which are related to the ground-state conformational heterogeneity of the ketocarotenoid. We assigned the slowly decaying population to the so-called S* state. Finally, we identify a minor decay pathway involving double-bond photoisomerization, which could be the initial trigger to photoactivation of OCP.
Collapse
Affiliation(s)
- Amanda Arcidiacono
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy
| | - Davide Accomasso
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy
| | - Lorenzo Cupellini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa Via G. Moruzzi 13 56124 Pisa Italy
| |
Collapse
|
5
|
Kuznetsova V, Fuciman M, Polívka T. Relaxation dynamics of high-energy excited states of carotenoids studied by UV excitation and pump-repump-probe transient absorption spectroscopy. Phys Chem Chem Phys 2023; 25:22336-22344. [PMID: 37580966 DOI: 10.1039/d3cp02485g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2023]
Abstract
The excited states of carotenoids have been a subject of numerous studies. While a majority of these reports target the excited state dynamics initiated by the excitation of the S2 state, the upper excited state(s) absorbing in the UV spectral region (denoted as SUV) has been only scarcely studied. Moreover, the relation between the SUV and Sn, the final state of the well-known S1-Sn transition of carotenoids, remains unknown. To address this yet-unresolved issue, we compared the excited state dynamics of two carotenoids, namely, β-carotene and astaxanthin, after excitation of either the SUV or Sn state. The SUV state was excited directly by UV light, and the excitation of the Sn state was achieved via re-pumping the S1-Sn transition. The results indicated that direct SUV excitation produces an S1-Sn band that is significantly broader than that obtained after S2 excitation, most probably due to the generation of multiple S1 conformations produced by excess energy. No such broadening is observed if the Sn state is excited by the re-pump pulse. This shows that the Sn and SUV states are different, each initializing a specific relaxation pathway. We propose that the Sn state retains the coupled triplet pair character of the S1 state, while the SUV state is the higher state of Bu+ symmetry accessible by one-photon transition.
Collapse
Affiliation(s)
- Valentyna Kuznetsova
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic.
| | - Marcel Fuciman
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic.
| | - Tomáš Polívka
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic.
| |
Collapse
|
6
|
Yin BW, Wang JL, Xue PJ, Zhang TS, Xie BB, Shen L, Fang WH. Understanding the Excited-State Relaxation Mechanisms of Xanthophyll Lutein by Multi-configurational Electronic Structure Calculations. J Chem Inf Model 2023; 63:4679-4690. [PMID: 37489739 DOI: 10.1021/acs.jcim.3c00640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/26/2023]
Abstract
The contradictory behaviors in light harvesting and non-photochemical quenching make xanthophyll lutein the most attractive functional molecule in photosynthesis. Despite several theoretical simulations on the spectral properties and excited-state dynamics, the atomic-level photophysical mechanisms need to be further studied and established, especially for an accurate description of geometric and electronic structures of conical intersections for the lowest several electronic states of lutein. In the present work, semiempirical OM2/MRCI and multi-configurational restricted active space self-consistent field methods were performed to optimize the minima and conical intersections in and between the 1Ag-, 2Ag-, 1Bu+, and 1Bu- states. Meanwhile, the relative energies were refined by MS-CASPT2(10,8)/6-31G*, which can reproduce correct electronic state properties as those in the spectroscopic experiments. Based on the above calculation results, we proposed a possible excited-state relaxation mechanism for lutein from its initially populated 1Bu+ state. Once excited to the optically bright 1Bu+ state, the system will propagate along the key reaction coordinate, i.e., the stretching vibration of the conjugated carbon chain. During this period of time, the 1Bu- state will participate in and forms a resonance state between the 1Bu- and 1Bu+ states. Later, the system will rapidly hop to the 2Ag- state via the 1Bu+/2Ag- conical intersection. Finally, the lutein molecule will survive in the 2Ag- state for a relatively long time before it internally converts to the ground state directly or via a twisted S1/S0 conical intersection. Notably, though the photophysical picture may be very different in solvents and proteins, the current theoretical study proposed a promising calculation protocol and also provided many valuable mechanistic insights for lutein and similar carotenoids.
Collapse
Affiliation(s)
- Bo-Wen Yin
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231 Zhejiang, P. R. China
| | - Jie-Lei Wang
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231 Zhejiang, P. R. China
| | - Pu-Jie Xue
- Key Laboratory of Theoretical and Computational Photochemistry of Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| | - Teng-Shuo Zhang
- College of Chemical Engineering, Zhejiang University of Technology, Hangzhou 310014, P. R. China
| | - Bin-Bin Xie
- Hangzhou Institute of Advanced Studies, Zhejiang Normal University, 1108 Gengwen Road, Hangzhou 311231 Zhejiang, P. R. China
| | - Lin Shen
- Key Laboratory of Theoretical and Computational Photochemistry of Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| | - Wei-Hai Fang
- Key Laboratory of Theoretical and Computational Photochemistry of Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, P. R. China
| |
Collapse
|
7
|
Sutherland GA, Pidgeon JP, Lee HKH, Proctor MS, Hitchcock A, Wang S, Chekulaev D, Tsoi WC, Johnson MP, Hunter CN, Clark J. Twisted Carotenoids Do Not Support Efficient Intramolecular Singlet Fission in the Orange Carotenoid Protein. J Phys Chem Lett 2023:6135-6142. [PMID: 37364284 DOI: 10.1021/acs.jpclett.3c01139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
Singlet exciton fission is the spin-allowed generation of two triplet electronic excited states from a singlet state. Intramolecular singlet fission has been suggested to occur on individual carotenoid molecules within protein complexes provided that the conjugated backbone is twisted out of plane. However, this hypothesis has been forwarded only in protein complexes containing multiple carotenoids and bacteriochlorophylls in close contact. To test the hypothesis on twisted carotenoids in a "minimal" one-carotenoid system, we study the orange carotenoid protein (OCP). OCP exists in two forms: in its orange form (OCPo), the single bound carotenoid is twisted, whereas in its red form (OCPr), the carotenoid is planar. To enable room-temperature spectroscopy on canthaxanthin-binding OCPo and OCPr without laser-induced photoconversion, we trap them in a trehalose glass. Using transient absorption spectroscopy, we show that there is no evidence of long-lived triplet generation through intramolecular singlet fission despite the canthaxanthin twist in OCPo.
Collapse
Affiliation(s)
- George A Sutherland
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - James P Pidgeon
- Department of Physics and Astronomy, University of Sheffield, Sheffield S3 7RH, U.K
| | - Harrison Ka Hin Lee
- SPECIFIC, Faculty of Science and Engineering, Swansea University, Swansea SA1 8EN, U.K
| | - Matthew S Proctor
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Andrew Hitchcock
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Shuangqing Wang
- Department of Physics and Astronomy, University of Sheffield, Sheffield S3 7RH, U.K
| | - Dimitri Chekulaev
- Department of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Wing Chung Tsoi
- SPECIFIC, Faculty of Science and Engineering, Swansea University, Swansea SA1 8EN, U.K
| | - Matthew P Johnson
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - C Neil Hunter
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield S10 2TN, U.K
| | - Jenny Clark
- Department of Physics and Astronomy, University of Sheffield, Sheffield S3 7RH, U.K
| |
Collapse
|
8
|
Pishchalnikov RY, Yaroshevich IA, Zlenko DV, Tsoraev GV, Osipov EM, Lazarenko VA, Parshina EY, Chesalin DD, Sluchanko NN, Maksimov EG. The role of the local environment on the structural heterogeneity of carotenoid β-ionone rings. PHOTOSYNTHESIS RESEARCH 2023; 156:3-17. [PMID: 36063303 DOI: 10.1007/s11120-022-00955-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 08/20/2022] [Indexed: 06/15/2023]
Abstract
Our analysis of the X-ray crystal structure of canthaxanthin (CAN) showed that its ketolated β-ionone rings can adopt two energetically equal, but structurally distinct puckers. Quantum chemistry calculations revealed that the potential energy surface of the β-ionone ring rotation over the plane of the conjugated π-system in carotenoids depends on the pucker state of the β-ring. Considering different pucker states and β-ionone ring rotation, we found six separate local minima on the potential energy surface defining the geometry of the keto-β-ionone ring-two cis and one trans orientation for each of two pucker states. We observed a small difference in energy and no difference in relative orientation for the cis-minima, but a pronounced difference for the position of trans-minimum in alternative pucker configurations. An energetic advantage of β-ionone ring rotation from a specific pucker type can reach up to 8 kJ/mol ([Formula: see text]). In addition, we performed the simulation of linear absorption of CAN in hexane and in a unit cell of the CAN crystal. The electronic energies of [Formula: see text] transition were estimated both for the CAN monomer and in the CAN crystal. The difference between them reached [Formula: see text], which roughly corresponds to the energy gap between A and B pucker states predicted by theoretical estimations. Finally, we have discussed the importance of such effects for biological systems whose local environment determines conformational mobility, and optical/functional characteristics of carotenoid.
Collapse
Affiliation(s)
- Roman Y Pishchalnikov
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilov Str., 38, Moscow, Russia, 119991.
| | - Igor A Yaroshevich
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Dmitry V Zlenko
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991
- A.N. Severtsov Institute of Ecology and Evolution (IEE), RAS, Moscow, Russia, 117071
| | - Georgy V Tsoraev
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Evgenii M Osipov
- Laboratory for Biocrystallography, KU Leuven, Herestraat 49, 3000, Leuven, Belgium
| | - Vladimir A Lazarenko
- National Research Center "Kurchatov Institute", 1 Akademika Kurchatova Pl., Moscow, Russia, 123182
| | - Evgenia Yu Parshina
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991
| | - Denis D Chesalin
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilov Str., 38, Moscow, Russia, 119991
| | - Nikolai N Sluchanko
- A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia, 119071
| | - Eugene G Maksimov
- Department of Biophysics, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia, 119991
| |
Collapse
|
9
|
Xing L, Dou Z, Cao X, Ren P, Zhang W, Wang S, Sun C, Men Z. Exploring electronic energy level structure and excited electronic states of β-carotene using DFT. Phys Chem Chem Phys 2023; 25:9373-9381. [PMID: 36920882 DOI: 10.1039/d2cp05594e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
Abstract
Carotenoids are a class of natural pigments that play a fundamental role in photosynthesis and optoelectronics. However, the complexity of their energy level structure and electronic states has prevented a clear interpretation of their photophysics and photochemistry. The mediating nonradiative decay of the bright S2 state to the dark S1 state of carotenoids involves a population of bridging intermediate state. Herein, time-dependent DFT was used to study the energy level and electronic excitation process of β-carotene. A π-π* transition and π electron delocalization of electron excitation could be inferred based on the difference in the electron cloud distribution of the HOMO and LUMO orbitals. Through the electronic transition contribution in the UV-vis spectra and the electron density difference between the ground state and the excited state, the electronic energy level structure and possible dark state were analyzed. On this basis, the electronic excitation process of β-carotene was theoretically studied by combining electron-hole analysis and transition density matrix (TDM). There was a charge transfer from the β-ionone ring to the long-chain in the (S0) → (S2), (S0) → (S4) and (S0) → (S5).
Collapse
Affiliation(s)
- Lu Xing
- Key Laboratory of Physics and Technology for Advanced Batteries of Ministry of Education, College of Physics, Jilin University, Changchun, 130012, China. .,College of Physics, Jilin University, Changchun, 130012, China.
| | - Zhenguo Dou
- Key Laboratory of Physics and Technology for Advanced Batteries of Ministry of Education, College of Physics, Jilin University, Changchun, 130012, China. .,College of Physics, Jilin University, Changchun, 130012, China.
| | - Xiumian Cao
- College of Physics, Jilin University, Changchun, 130012, China.
| | - Panpan Ren
- Key Laboratory of Physics and Technology for Advanced Batteries of Ministry of Education, College of Physics, Jilin University, Changchun, 130012, China. .,College of Physics, Jilin University, Changchun, 130012, China.
| | - Wei Zhang
- School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Shenghan Wang
- College of Physics, Jilin University, Changchun, 130012, China.
| | - Chenglin Sun
- Key Laboratory of Physics and Technology for Advanced Batteries of Ministry of Education, College of Physics, Jilin University, Changchun, 130012, China.
| | - Zhiwei Men
- Key Laboratory of Physics and Technology for Advanced Batteries of Ministry of Education, College of Physics, Jilin University, Changchun, 130012, China.
| |
Collapse
|
10
|
Özcan E, Kuznetsova V, Keşan G, Fuciman M, Litvín R, Polívka T. Ultrafast Excited States Dynamics of Metal Ion Complexes of the Carotenoid Astaxanthin. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2023.114737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
|
11
|
Niedzwiedzki DM. Transient " cis-Peak" Is Present in Excited-State Absorption of Central- cis Isomers of Carotenoids. J Phys Chem Lett 2023; 14:1650-1655. [PMID: 36753559 DOI: 10.1021/acs.jpclett.2c03855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Application of femtosecond time-resolved transient absorption spectroscopy on all-trans and central-cis isomers of two exemplary carotenoids, lutein and spirilloxanthin, performed at room and cryogenic temperatures in the spectral range expanded toward UV revealed new spectroscopic transient features for the cis isomers. Notably, particularly for the central-cis spirilloxanthin, a very distinct additional transient absorption band is observed on the short wavelength side of the main excited-state absorption band of the S1 state, having the same temporal characteristics as the latter one. This band is absent in transient absorption spectra of all-trans isomers, suggesting it could be assigned to "transient cis-peak." Overall, the results show that the "transient" counterpart of the spectral marker of cis-isomers of carotenoids, or the so-called cis-peak, is detectable in the excited-state absorption spectrum and could be attributed to electronic transition from the S1 state. This new transient spectral band could be very useful for spectroscopic experiments targeting the dynamics of carotenoid isomers and their severely distorted forms.
Collapse
Affiliation(s)
- Dariusz M Niedzwiedzki
- Center for Solar Energy and Energy Storage and Department of Energy Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United States
| |
Collapse
|
12
|
Zhao H, Xu X, Wang S, Li S, Sun C, Men Z. Modulated excited state geometry and Electron-Phonon coupling of lutein by temperature and solvent polarizability. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 280:121520. [PMID: 35728401 DOI: 10.1016/j.saa.2022.121520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 06/07/2022] [Accepted: 06/14/2022] [Indexed: 06/15/2023]
Abstract
Resonance Raman spectroscopy is one of the spectroscopic methods often chosen for studying linear polyene molecules because the Raman intensities of their υ1 (C = C) and υ2 (C-C) stretching vibrations are sensitive to electron-phonon coupling and the π-electron energy gap. Here, the resonance Raman and absorption spectra of lutein were studied as a function of solvent polarizabilities and of temperature in the CS2 solvent. For lutein in CS2, as the temperature decreased and CS solidified, the Raman scattering cross-section (RSCS) and the electron-phonon coupling constant had opposite dependence trends on temperature. The wavenumber of the lutein 0-0 electronic transition showed a marked shift to lower wavenumbers when the polarizability of the solvents decreased, and the Huang-Rhys (HR) factors and electron-phonon coupling also decreased. This work helps explore the influence of the external environment (e.g., temperature and solvent) on the excited state geometry of linear polyene molecules.
Collapse
Affiliation(s)
- Haiying Zhao
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Xin Xu
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China
| | - Shenghan Wang
- College of Physics, Jilin University, Changchun 130012, China
| | - Shuo Li
- College of Physics, Jilin University, Changchun 130012, China
| | - Chenglin Sun
- College of Physics, Jilin University, Changchun 130012, China.
| | - Zhiwei Men
- Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China.
| |
Collapse
|
13
|
Wilson A, Andreeva EA, Niziński S, Talbot L, Hartmann E, Schlichting I, Burdzinski G, Sliwa M, Kirilovsky D, Colletier JP. Structure-function-dynamics relationships in the peculiar Planktothrix PCC7805 OCP1: Impact of his-tagging and carotenoid type. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2022; 1863:148584. [PMID: 35752265 DOI: 10.1016/j.bbabio.2022.148584] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 05/31/2022] [Accepted: 06/07/2022] [Indexed: 06/15/2023]
Abstract
The orange carotenoid protein (OCP) is a photoactive protein involved in cyanobacterial photoprotection. Here, we report on the functional, spectral and structural characteristics of the peculiar Planktothrix PCC7805 OCP (Plankto-OCP). We show that this OCP variant is characterized by higher photoactivation and recovery rates, and a stronger energy-quenching activity, compared to other OCP studied thus far. We characterize the effect of the functionalizing carotenoid and of his-tagging on these reactions, and identify the time scales on which these modifications affect photoactivation. The presence of a his-tag at the C-terminus has a large influence on photoactivation, thermal recovery and PBS-fluorescence quenching, and likewise for the nature of the carotenoid that additionally affects the yield and characteristics of excited states and the ns-s dynamics of photoactivated OCP. By solving the structures of Plankto-OCP in the ECN- and CAN-functionalized states, each in two closely-related crystal forms, we further unveil the molecular breathing motions that animate Plankto-OCP at the monomer and dimer levels. We finally discuss the structural changes that could explain the peculiar properties of Plankto-OCP.
Collapse
Affiliation(s)
- Adjélé Wilson
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Elena A Andreeva
- Univ. Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France; Max-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120 Heidelberg, Germany
| | - Stanisław Niziński
- Univ. Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les Interactions, la Réactivité et l'Environnement, Lille 59000, France; Quantum Electronics Laboratory, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, Poznan 61-614, Poland
| | - Léa Talbot
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Elisabeth Hartmann
- Max-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120 Heidelberg, Germany
| | - Ilme Schlichting
- Max-Planck-Institut für medizinische Forschung, Jahnstrasse 29, 69120 Heidelberg, Germany
| | - Gotard Burdzinski
- Quantum Electronics Laboratory, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, Poznan 61-614, Poland
| | - Michel Sliwa
- Univ. Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les Interactions, la Réactivité et l'Environnement, Lille 59000, France.
| | - Diana Kirilovsky
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France.
| | | |
Collapse
|
14
|
Šímová I, Kuznetsova V, Gardiner AT, Šebelík V, Koblížek M, Fuciman M, Polívka T. Carotenoid responds to excess energy dissipation in the LH2 complex from Rhodoblastus acidophilus. PHOTOSYNTHESIS RESEARCH 2022; 154:75-87. [PMID: 36066816 DOI: 10.1007/s11120-022-00952-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/17/2022] [Indexed: 06/15/2023]
Abstract
The functions of both (bacterio) chlorophylls and carotenoids in light-harvesting complexes have been extensively studied during the past decade, yet, the involvement of BChl a high-energy Soret band in the cascade of light-harvesting processes still remains a relatively unexplored topic. Here, we present transient absorption data recorded after excitation of the Soret band in the LH2 complex from Rhodoblastus acidophilus. Comparison of obtained data to those recorded after excitation of rhodopin glucoside and B800 BChl a suggests that no Soret-to-Car energy transfer pathway is active in LH2 complex. Furthermore, a spectrally rich pattern observed in the spectral region of rhodopin glucoside ground state bleaching (420-550 nm) has been assigned to an electrochromic shift. The results of global fitting analysis demonstrate two more features. A 6 ps component obtained exclusively after excitation of the Soret band has been assigned to the response of rhodopin glucoside to excess energy dissipation in LH2. Another time component, ~ 450 ps, appearing independently of the excitation wavelength was assigned to BChl a-to-Car triplet-triplet transfer. Presented data demonstrate several new features of LH2 complex and its behavior following the excitation of the Soret band.
Collapse
Affiliation(s)
- Ivana Šímová
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská, 1760, 370 05, Ceske Budejovice, Czech Republic
| | - Valentyna Kuznetsova
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská, 1760, 370 05, Ceske Budejovice, Czech Republic
| | - Alastair T Gardiner
- Laboratory of Anoxygenic Phototrophs, Institute of Microbiology, Czech Academy of Sciences, 379 81, Třeboň, Czech Republic
| | - Václav Šebelík
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská, 1760, 370 05, Ceske Budejovice, Czech Republic
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748, Garching b. Munich, Germany
| | - Michal Koblížek
- Laboratory of Anoxygenic Phototrophs, Institute of Microbiology, Czech Academy of Sciences, 379 81, Třeboň, Czech Republic
| | - Marcel Fuciman
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská, 1760, 370 05, Ceske Budejovice, Czech Republic
| | - Tomáš Polívka
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská, 1760, 370 05, Ceske Budejovice, Czech Republic.
| |
Collapse
|
15
|
Oligomerization processes limit photoactivation and recovery of the Orange Carotenoid Protein. Biophys J 2022; 121:2849-2872. [PMID: 35794830 PMCID: PMC9388578 DOI: 10.1016/j.bpj.2022.07.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 05/17/2022] [Accepted: 07/01/2022] [Indexed: 11/23/2022] Open
Abstract
The Orange Carotenoid Protein (OCP) is a photoactive protein involved in cyanobacterial photoprotection, by quenching of the excess of light harvested energy. The photoactivation mechanism remains elusive, in part due to absence of data pertaining to the timescales over which protein structural changes take place. It also remains unclear whether or not oligomerization of the dark-adapted and light-adapted OCP could play a role in the regulation of its energy quenching activity. Here, we probed photo-induced structural changes in OCP by a combination of static and time-resolved X-ray scattering and steady-state and transient optical spectroscopy in the visible range. Our results suggest that oligomerization partakes in regulation of the OCP photocycle, with different oligomers slowing down the overall thermal recovery of the dark-adapted state of OCP. They furthermore reveal that upon non-photoproductive excitation, a numbed-state forms, which remains in a non-photoexcitable structural state for at least ∼0.5 μs after absorption of a first photon.
Collapse
|
16
|
Šebelík V, Duffy CDP, Keil E, Polívka T, Hauer J. Understanding Carotenoid Dynamics via the Vibronic Energy Relaxation Approach. J Phys Chem B 2022; 126:3985-3994. [PMID: 35609122 DOI: 10.1021/acs.jpcb.2c00996] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Carotenoids are an integral part of natural photosynthetic complexes, with tasks ranging from light harvesting to photoprotection. Their underlying energy deactivation network of optically dark and bright excited states is extremely efficient: after excitation of light with up to 2.5 eV of photon energy, the system relaxes back to ground state on a time scale of a few picoseconds. In this article, we summarize how a model based on the vibrational energy relaxation approach (VERA) explains the main characteristics of relaxation dynamics after one-photon excitation with special emphasis on the so-called S* state. Lineshapes after two-photon excitation are beyond the current model of VERA. We outline this future line of research in our article. In terms of experimental method development, we discuss which techniques are needed to better describe energy dissipation effects in carotenoids and within the first solvation shell.
Collapse
Affiliation(s)
- Václav Šebelík
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Christopher D P Duffy
- Digital Environment Research Institute, Queen Mary University of London, London E1 4NS, U.K
| | - Erika Keil
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Tomáš Polívka
- Department of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05 České Budějovice, Czech Republic.,Biology Centre, Institute of Plant Molecular Biology, Czech Academy of Sciences, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Jürgen Hauer
- Dynamical Spectroscopy, Department of Chemistry, Technical University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| |
Collapse
|
17
|
Niziński S, Wilson A, Uriarte LM, Ruckebusch C, Andreeva EA, Schlichting I, Colletier JP, Kirilovsky D, Burdzinski G, Sliwa M. Unifying Perspective of the Ultrafast Photodynamics of Orange Carotenoid Proteins from Synechocystis: Peril of High-Power Excitation, Existence of Different S* States, and Influence of Tagging. JACS AU 2022; 2:1084-1095. [PMID: 35647603 PMCID: PMC9131370 DOI: 10.1021/jacsau.1c00472] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 02/02/2022] [Accepted: 02/03/2022] [Indexed: 06/15/2023]
Abstract
A substantial number of Orange Carotenoid Protein (OCP) studies have aimed to describe the evolution of singlet excited states leading to the formation of a photoactivated form, OCPR. The most recent one suggests that 3 ps-lived excited states are formed after the sub-100 fs decay of the initial S2 state. The S* state, which has the longest reported lifetime of a few to tens of picoseconds, is considered to be the precursor of the first red photoproduct P1. Here, we report the ultrafast photodynamics of the OCP from Synechocystis PCC 6803 carried out using visible-near infrared femtosecond time-resolved absorption spectroscopy as a function of the excitation pulse power and wavelength. We found that a carotenoid radical cation can form even at relatively low excitation power, obscuring the determination of photoactivation yields for P1. Moreover, the comparison of green (540 nm) and blue (470 nm) excitations revealed the existence of an hitherto uncharacterized excited state, denoted as S∼, living a few tens of picoseconds and formed only upon 470 nm excitation. Because neither the P1 quantum yield nor the photoactivation speed over hundreds of seconds vary under green and blue continuous irradiation, this S∼ species is unlikely to be involved in the photoactivation mechanism leading to OCPR. We also addressed the effect of His-tagging at the N- or C-termini on the excited-state photophysical properties. Differences in spectral signatures and lifetimes of the different excited states were observed at a variance with the usual assumption that His-tagging hardly influences protein dynamics and function. Altogether our results advocate for the careful consideration of the excitation power and His-tag position when comparing the photoactivation of different OCP variants and beg to revisit the notion that S* is the precursor of photoactivated OCPR.
Collapse
Affiliation(s)
- Stanisław Niziński
- Quantum
Electronics Laboratory, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, Poznan 61-614, Poland
- Univ.
Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les
Interactions, la Réactivité et l’Environnement, Lille 59000, France
| | - Adjéle Wilson
- Université
Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the
Cell (I2BC), Gif-sur-Yvette 91198, France
| | - Lucas M. Uriarte
- Univ.
Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les
Interactions, la Réactivité et l’Environnement, Lille 59000, France
| | - Cyril Ruckebusch
- Univ.
Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les
Interactions, la Réactivité et l’Environnement, Lille 59000, France
| | - Elena A. Andreeva
- Univ.
Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, Grenoble 38000, France
- Max-Planck-Institut
für Medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany
| | - Ilme Schlichting
- Max-Planck-Institut
für Medizinische Forschung, Jahnstrasse 29, Heidelberg 69120, Germany
| | | | - Diana Kirilovsky
- Université
Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the
Cell (I2BC), Gif-sur-Yvette 91198, France
| | - Gotard Burdzinski
- Quantum
Electronics Laboratory, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, Poznan 61-614, Poland
| | - Michel Sliwa
- Univ.
Lille, CNRS, UMR 8516, LASIRE, LAboratoire de Spectroscopie pour les
Interactions, la Réactivité et l’Environnement, Lille 59000, France
| |
Collapse
|
18
|
Ruban A, Saccon F. Chlorophyll a De-Excitation Pathways in the LHCII antenna. J Chem Phys 2022; 156:070902. [DOI: 10.1063/5.0073825] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Alexander Ruban
- SBBS, Queen Mary University of London - Mile End Campus, United Kingdom
| | - Francesco Saccon
- School of Biological and Chemical Sciences, Queen Mary University of London - Mile End Campus, United Kingdom
| |
Collapse
|
19
|
Jakučionis M, Gaižiu Nas I, Šulskus J, Abramavičius D. Simulation of Ab Initio Optical Absorption Spectrum of β-Carotene with Fully Resolved S0 and S2 Vibrational Normal Modes. J Phys Chem A 2022; 126:180-189. [PMID: 34985272 DOI: 10.1021/acs.jpca.1c06115] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The electronic absorption spectrum of β-carotene (β-Car) is studied using quantum chemistry and quantum dynamics simulations. Vibrational normal modes were computed in optimized geometries of the electronic ground state S0 and the optically bright excited S2 state using the time-dependent density functional theory. By expressing the S2-state normal modes in terms of the ground-state modes, we find that no one-to-one correspondence between the ground- and excited-state vibrational modes exists. Using the ab initio results, we simulated the β-Car absorption spectrum with all 282 vibrational modes in a model solvent at 300 K using the time-dependent Dirac-Frenkel variational principle and are able to qualitatively reproduce the full absorption line shape. By comparing the 282-mode model with the prominent 2-mode model, widely used to interpret carotenoid experiments, we find that the full 282-mode model better describes the high-frequency progression of carotenoid absorption spectra; hence, vibrational modes become highly mixed during the S0 → S2 optical excitation. The obtained results suggest that electronic energy dissipation is mediated by numerous vibrational modes.
Collapse
Affiliation(s)
- Mantas Jakučionis
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Ignas Gaižiu Nas
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Juozas Šulskus
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| | - Darius Abramavičius
- Institute of Chemical Physics, Vilnius University, Sauletekio Avenue 9-III, LT-10222 Vilnius, Lithuania
| |
Collapse
|
20
|
UV Excitation of Carotenoid Binding Proteins OCP and HCP: Excited‐State Dynamics and Product Formation. CHEMPHOTOCHEM 2021. [DOI: 10.1002/cptc.202100194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
21
|
Investigating carotenoid photophysics in photosynthesis with 2D electronic spectroscopy. TRENDS IN CHEMISTRY 2021. [DOI: 10.1016/j.trechm.2021.05.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
|
22
|
Bondanza M, Jacquemin D, Mennucci B. Excited States of Xanthophylls Revisited: Toward the Simulation of Biologically Relevant Systems. J Phys Chem Lett 2021; 12:6604-6612. [PMID: 34251826 PMCID: PMC8311646 DOI: 10.1021/acs.jpclett.1c01929] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 07/08/2021] [Indexed: 06/13/2023]
Abstract
Xanthophylls are a class of oxygen-containing carotenoids, which play a fundamental role in light-harvesting pigment-protein complexes and in many photoresponsive proteins. The complexity of the manifold of the electronic states and the large sensitivity to the environment still prevent a clear and coherent interpretation of their photophysics and photochemistry. In this Letter, we compare cutting-edge ab initio methods (CC3 and DMRG/NEVPT2) with time-dependent DFT and semiempirical CI (SECI) on model keto-carotenoids and show that SECI represents the right compromise between accuracy and computational cost to be applied to real xanthophylls in their biological environment. As an example, we investigate canthaxanthin in the orange carotenoid protein and show that the conical intersections between excited states and excited-ground states are mostly determined by the effective bond length alternation coordinate, which is significantly tuned by the protein through geometrical constraints and electrostatic effects.
Collapse
Affiliation(s)
- Mattia Bondanza
- Dipartimento
di Chimica e Chimica Industriale, University
of Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Denis Jacquemin
- Université
de Nantes, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Benedetta Mennucci
- Dipartimento
di Chimica e Chimica Industriale, University
of Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| |
Collapse
|
23
|
Yaroshevich IA, Maksimov EG, Sluchanko NN, Zlenko DV, Stepanov AV, Slutskaya EA, Slonimskiy YB, Botnarevskii VS, Remeeva A, Gushchin I, Kovalev K, Gordeliy VI, Shelaev IV, Gostev FE, Khakhulin D, Poddubnyy VV, Gostev TS, Cherepanov DA, Polívka T, Kloz M, Friedrich T, Paschenko VZ, Nadtochenko VA, Rubin AB, Kirpichnikov MP. Role of hydrogen bond alternation and charge transfer states in photoactivation of the Orange Carotenoid Protein. Commun Biol 2021; 4:539. [PMID: 33972665 PMCID: PMC8110590 DOI: 10.1038/s42003-021-02022-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Accepted: 03/16/2021] [Indexed: 11/17/2022] Open
Abstract
Here, we propose a possible photoactivation mechanism of a 35-kDa blue light-triggered photoreceptor, the Orange Carotenoid Protein (OCP), suggesting that the reaction involves the transient formation of a protonated ketocarotenoid (oxocarbenium cation) state. Taking advantage of engineering an OCP variant carrying the Y201W mutation, which shows superior spectroscopic and structural properties, it is shown that the presence of Trp201 augments the impact of one critical H-bond between the ketocarotenoid and the protein. This confers an unprecedented homogeneity of the dark-adapted OCP state and substantially increases the yield of the excited photoproduct S*, which is important for the productive photocycle to proceed. A 1.37 Å crystal structure of OCP Y201W combined with femtosecond time-resolved absorption spectroscopy, kinetic analysis, and deconvolution of the spectral intermediates, as well as extensive quantum chemical calculations incorporating the effect of the local electric field, highlighted the role of charge-transfer states during OCP photoconversion. Yaroshevich et al. present a chemical reaction mechanism of a 35-kDa blue light-triggered photoreceptor, the Orange Carotenoid Protein (OCP). They find that photoactivation critically involves the transient formation of a protonated ketocarotenoid (oxocarbenium cation) state. This study suggests the role of charge-transfer states during OCP photoconversion.
Collapse
Affiliation(s)
- Igor A Yaroshevich
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Eugene G Maksimov
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia. .,A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
| | - Nikolai N Sluchanko
- A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia
| | - Dmitry V Zlenko
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Alexey V Stepanov
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Ekaterina A Slutskaya
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.,M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Yury B Slonimskiy
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.,A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia
| | - Viacheslav S Botnarevskii
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.,A.N. Bach Institute of Biochemistry, Federal Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia
| | - Alina Remeeva
- Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia
| | - Ivan Gushchin
- Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia
| | - Kirill Kovalev
- Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia.,Institut de Biologie Structurale J.-P. Ebel, Université Grenoble Alpes-CEA-CNRS, Grenoble, France.,Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany.,JuStruct: Jülich Center for Structural Biology, Forschungszentrum Jülich, Jülich, Germany.,Institute of Crystallography, RWTH Aachen University, Aachen, Germany
| | - Valentin I Gordeliy
- Research Center for Molecular Mechanisms of Aging and Age-Related Diseases, Moscow Institute of Physics and Technology, Dolgoprudny, Russia.,Institut de Biologie Structurale J.-P. Ebel, Université Grenoble Alpes-CEA-CNRS, Grenoble, France.,Institute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany.,JuStruct: Jülich Center for Structural Biology, Forschungszentrum Jülich, Jülich, Germany
| | - Ivan V Shelaev
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Moscow, Russia
| | - Fedor E Gostev
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Moscow, Russia
| | | | | | - Timofey S Gostev
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Dmitry A Cherepanov
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Moscow, Russia.,A.N. Belozersky Institute of Physical-Chemical Biology, Moscow State University, Moscow, Russia
| | - Tomáš Polívka
- Institute of Physics, Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Miroslav Kloz
- ELI-Beamlines, Institute of Physics, Praha, Czech Republic
| | - Thomas Friedrich
- Technische Universität Berlin, Institute of Chemistry PC14, Berlin, Germany
| | | | - Victor A Nadtochenko
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Moscow, Russia
| | - Andrew B Rubin
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia
| | - Mikhail P Kirpichnikov
- Faculty of Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.,M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
| |
Collapse
|
24
|
Gacek DA, Betke A, Nowak J, Lokstein H, Walla PJ. Two-photon absorption and excitation spectroscopy of carotenoids, chlorophylls and pigment-protein complexes. Phys Chem Chem Phys 2021; 23:8731-8738. [PMID: 33876032 DOI: 10.1039/d1cp00656h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In addition to (bacterio)chlorophylls, (B)Chls, photosynthetic pigment-protein complexes bind carotenoids (Cars) that fulfil various important functions which are not fully understood, yet. However, certain excited states of Cars are optically one-photon forbidden ("dark") and can potentially undergo excitation energy transfer (EET) to (B)Chls following two-photon absorption (TPA). The amount of EET is reflected by the differences in TPA and two-photon excitation (TPE) spectra of a complex (multi-pigment) system. Since it is technically and analytically demanding to resolve optically forbidden states, different studies reported varying contributions of Cars and Chls to TPE/TPA spectra. In a study using well-defined 1 : 1 Car-tetrapyrrole dyads TPE contributions of tetrapyrrole molecules, including Chls, and Cars were measured. In these experiments, TPE of Cars dominated over Chl a TPE in a broad wavelength range. Another study suggested only minor contributions of Cars to TPE spectra of pigment-protein complexes such as the plant main light-harvesting complex (LHCII), in particular for wavelengths longer than ∼600/1200 nm. By joining forces and a combined analysis of all available data by both teams, we try to resolve this apparent contradiction. Here, we demonstrate that reconstruction of a wide spectral range of TPE for LHCII and photosystem I (PSI) requires both, significant Car and Chl contributions. Direct comparison of TPE spectra obtained in both studies demonstrates a good agreement of the primary data. We conclude that in TPE spectra of LHCII and PSI, the contribution of Chls is dominating above 600/1200 nm, whereas the contributions of forbidden Car states increase particularly at wavelengths shorter than 600/1200 nm. Estimates of Car contributions to TPA as well as TPE spectra are given for various wavelengths.
Collapse
Affiliation(s)
- Daniel A Gacek
- Technische Universität Braunschweig, Institute for Physical and Theoretical Chemistry, Department for Biophysical Chemistry, Gaußstr. 17, 38106 Braunschweig, Germany.
| | | | | | | | | |
Collapse
|
25
|
Khan T, Litvín R, Šebelík V, Polívka T. Excited-State Evolution of Keto-Carotenoids after Excess Energy Excitation in the UV Region. Chemphyschem 2021; 22:471-480. [PMID: 33373476 DOI: 10.1002/cphc.202000982] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 12/23/2020] [Indexed: 11/10/2022]
Abstract
Carotenoids are molecules with rich photophysics that are in many biological systems involved in photoprotection. Yet, their response to excess energy excitation is only scarcely studied. Here we have explored excited state properties of three keto-carotenoids, echinenone, canthaxanthin and rhodoxanthin after excess energy excitation to a singlet state absorbing in UV. Though the basic spectral features and kinetics of S2 , hot S1 , relaxed S1 states remain unchanged upon UV excitation, the clear increase of the S* signal is observed after excess energy excitation, associated with increased S* lifetime. A multiple origin of the S* signal, originating either from specific conformations in the S1 state or from a non-equilibrated ground state, is confirmed in this work. We propose that the increased amount of energy stored in molecular vibrations, induced by the UV excitation, is the reason for the enhanced S* signal observed after UV excitation. Our data also suggest that a fraction of the UV excited state population may proceed through a non-sequential pathway, bypassing the S2 state.
Collapse
Affiliation(s)
- Tuhin Khan
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| | - Radek Litvín
- Institute of Chemistry, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05, České Budějovice, Czech Republic.,Biology Centre, Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, Czech Republic
| | - Václav Šebelík
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| | - Tomáš Polívka
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| |
Collapse
|
26
|
Gong N, Yao F, Wang J, Fang W, Sun C, Men Z. Excited state geometry of β-carotene influenced by environments: the nature and decisive role of solvent revealing by two-dimensional resonance Raman correlation spectroscopy. OPTICS EXPRESS 2020; 28:33068-33076. [PMID: 33114976 DOI: 10.1364/oe.404647] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 10/09/2020] [Indexed: 06/11/2023]
Abstract
Resonance Raman scattering can be used to investigate the ground and excited state information of carotenoid. It is known that the Dushinsky rotation can significantly influence the resonant Raman intensity of β-carotene (β-car). The excited state geometry revealed by the double components feature of the C = C stretching vibrational modes and the environmental dependence of the Raman intensity for each component remain unknown. We explore the influence of environmental factors on the relative intensity of these two C = C stretching vibration modes and perform two-dimensional resonance Raman correlation analysis to reveal the changes on β-car excited state geometry. The results show that the relative wavelength difference between the 0-0 absorption and the excitation is the key factor that decides the intensity ratio of the two components and that the intensity of each mode is modulated by environmental factors. This modulation is closely related to the excited state geometry and dynamics, effective conjugation length, and electron-phonon coupling constant. It also shows that the asynchronous cross-peaks in the two-dimensional resonance Raman correlation spectrum (2DRRCOS) can effectively characterize the degree of the varied electron-phonon coupling with the changing conditions. These results are not only complementary to the research on the excited states of carotenoids but also applicable to investigate the environmental dependence of Raman intensity for a lot of π-conjugated molecules.
Collapse
|
27
|
Optical Projection and Spatial Separation of Spin-Entangled Triplet Pairs from the S1 (21 Ag–) State of Pi-Conjugated Systems. Chem 2020. [DOI: 10.1016/j.chempr.2020.09.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
|
28
|
Saccon F, Durchan M, Bína D, Duffy CD, Ruban AV, Polívka T. A Protein Environment-Modulated Energy Dissipation Channel in LHCII Antenna Complex. iScience 2020; 23:101430. [PMID: 32818906 PMCID: PMC7452274 DOI: 10.1016/j.isci.2020.101430] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 06/19/2020] [Accepted: 07/31/2020] [Indexed: 12/14/2022] Open
Abstract
The major light-harvesting complex of photosystem II (LHCII) is the main contributor to sunlight energy harvesting in plants. The flexible design of LHCII underlies a photoprotective mechanism whereby this complex switches to a dissipative state in response to high light stress, allowing the rapid dissipation of excess excitation energy (non-photochemical quenching, NPQ). In this work, we locked single LHCII trimers in a quenched conformation after immobilization of the complexes in polyacrylamide gels to impede protein interactions. A comparison of their pigment excited-state dynamics with quenched LHCII aggregates in buffer revealed the presence of a new spectral band at 515 nm arising after chlorophyll excitation. This is suggested to be the signature of a carotenoid excited state, linked to the quenching of chlorophyll singlet excited states. Our data highlight the marked sensitivity of pigment excited-state dynamics in LHCII to structural changes induced by the environment.
Collapse
Affiliation(s)
- Francesco Saccon
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, E1 4NS London, UK
| | - Milan Durchan
- University of South Bohemia, Institute of Physics, Faculty of Science, České Budějovice, Czech Republic
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, České Budějovice, Czech Republic
| | - David Bína
- University of South Bohemia, Institute of Chemistry, Faculty of Science, České Budějovice, Czech Republic
- Czech Academy of Sciences, Biology Centre, Institute of Plant Molecular Biology, České Budějovice, Czech Republic
| | - Christopher D.P. Duffy
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, E1 4NS London, UK
| | - Alexander V. Ruban
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, E1 4NS London, UK
| | - Tomáš Polívka
- University of South Bohemia, Institute of Physics, Faculty of Science, České Budějovice, Czech Republic
| |
Collapse
|
29
|
Kozlov MI, Poddubnyy VV. Electron-Vibrational Spectra and Dynamics of the Lutein Molecule. J Phys Chem B 2020; 124:5780-5787. [PMID: 32573243 DOI: 10.1021/acs.jpcb.0c02511] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The carotenoid molecules such as lutein play an important role in the absorption of light and the following transfer of energy during photosynthesis. However, the study of these processes by the experimental methods only is quite difficult because some of the transitions between the electronic states of carotenoids are optically forbidden and the effect of vibrational states change also must be taken into account. In the present work, electronic-vibrational states of the lutein molecule in the LHCII complex of higher plants and in the diethyl ether solution were described using the ab initio methods. For lutein of LHCII, the electronic energy transfer processes were modeled. The role of the "hot" S1 states of lutein was shown to be of great importance.
Collapse
Affiliation(s)
- Maxim I Kozlov
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia
| | | |
Collapse
|
30
|
Cupellini L, Calvani D, Jacquemin D, Mennucci B. Charge transfer from the carotenoid can quench chlorophyll excitation in antenna complexes of plants. Nat Commun 2020; 11:662. [PMID: 32005811 PMCID: PMC6994720 DOI: 10.1038/s41467-020-14488-6] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 01/09/2020] [Indexed: 12/31/2022] Open
Abstract
The photosynthetic apparatus of higher plants can dissipate excess excitation energy during high light exposure, by deactivating excited chlorophylls through a mechanism called nonphotochemical quenching (NPQ). However, the precise molecular details of quenching and the mechanism regulating the quenching level are still not completely understood. Focusing on the major light-harvesting complex LHCII of Photosystem II, we show that a charge transfer state involving Lutein can efficiently quench chlorophyll excitation, and reduce the excitation lifetime of LHCII to the levels measured in the deeply quenched LHCII aggregates. Through a combination of molecular dynamics simulations, multiscale quantum chemical calculations, and kinetic modeling, we demonstrate that the quenching level can be finely tuned by the protein, by regulating the energy of the charge transfer state. Our results suggest that a limited conformational rearrangement of the protein scaffold could act as a molecular switch to activate or deactivate the quenching mechanism.
Collapse
Affiliation(s)
- Lorenzo Cupellini
- Università di Pisa, Dipartimento di Chimica e Chimica Industriale, Via G. Moruzzi 13, 56124, Pisa, (PI), Italy.
| | - Dario Calvani
- Università di Pisa, Dipartimento di Chimica e Chimica Industriale, Via G. Moruzzi 13, 56124, Pisa, (PI), Italy
| | - Denis Jacquemin
- Laboratoire CEISAM-UMR CNRS 6230, Université de Nantes, 2 Rue de la Houssiniere, BP-92208, F-44322 Cedex 3, Nantes, France
| | - Benedetta Mennucci
- Università di Pisa, Dipartimento di Chimica e Chimica Industriale, Via G. Moruzzi 13, 56124, Pisa, (PI), Italy.
| |
Collapse
|
31
|
Šebelík V, Kloz M, Rebarz M, Přeček M, Kang EH, Choi TL, Christensen RL, Polívka T. Spectroscopy and excited state dynamics of nearly infinite polyenes. Phys Chem Chem Phys 2020; 22:17867-17879. [PMID: 32766621 DOI: 10.1039/d0cp02465a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Steady-state and transient absorption spectra with <50 fs time resolution were obtained for two conjugated polymers, both with ≈200 conjugated double bonds (N), constrained in planar, stable, polyene frameworks. Solutions of the polymers exhibit the same S2 → S1 → S* → S0 decay pathway observed for the N = 11-19 polyene oligomers and for zeaxanthin homologues with N = 11-23. Comparisons with the excited state dynamics of polydiactylene and a much longer, more disordered polyene polymer (poly(DEDPM)) show that the S2, S1, and S* lifetimes of the four polymers are almost identical. The S* signals in the polymers are assigned to absorption from vibrationally excited ground states. In spite of significant heterogeneities and variations in conjugation lengths in these long polyenes, their S0 → S2 absorptions are vibronically-resolved in room temperature solutions with electronic origins at ≈600 nm. The limiting wavelength for the S0 → S2 transitions is consistent with the persistence of bond length alternation in the electronic ground states and a HOMO-LUMO band gap in polyenes with N ≈ 200. The coincidence of the well-resolved S0 → S2 electronic origins and the convergence of the excited state lifetimes in the four polymers point to a common, "nearly infinite" polyene limit.
Collapse
Affiliation(s)
- Václav Šebelík
- Institute of Physics, Faculty of Science, University of South Bohemia, České Budjovice, Czech Republic.
| | - Miroslav Kloz
- ELI Beamlines, Institute of Physics, Czech Academy of Sciences, Za Radnicí 835, 252 41 Dolní BřeŽany, Czech Republic
| | - Mateusz Rebarz
- ELI Beamlines, Institute of Physics, Czech Academy of Sciences, Za Radnicí 835, 252 41 Dolní BřeŽany, Czech Republic
| | - Martin Přeček
- ELI Beamlines, Institute of Physics, Czech Academy of Sciences, Za Radnicí 835, 252 41 Dolní BřeŽany, Czech Republic
| | - Eun-Hye Kang
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | - Tae-Lim Choi
- Department of Chemistry, Seoul National University, Seoul 08826, Korea
| | | | - Tomáš Polívka
- Institute of Physics, Faculty of Science, University of South Bohemia, České Budjovice, Czech Republic.
| |
Collapse
|
32
|
Jakučionis M, Mancal T, Abramavičius D. Modeling irreversible molecular internal conversion using the time-dependent variational approach with sD2 ansatz. Phys Chem Chem Phys 2020; 22:8952-8962. [DOI: 10.1039/d0cp01092h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A model of irreversible molecular internal conversion dynamics due to molecular thermal energy dissipation to the bath is presented.
Collapse
Affiliation(s)
- Mantas Jakučionis
- Institute of Chemical Physics
- Vilnius University
- LT-10222 Vilnius
- Lithuania
| | - Tomas Mancal
- Faculty of Mathematics and Physics
- Charles University
- 121 16 Prague
- Czech Republic
| | | |
Collapse
|
33
|
Adamec F, Farci D, Bína D, Litvín R, Khan T, Fuciman M, Piano D, Polívka T. Photophysics of deinoxanthin, the keto-carotenoid bound to the main S-layer unit of Deinococcus radiodurans. Photochem Photobiol Sci 2020; 19:495-503. [DOI: 10.1039/d0pp00031k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
An ultrafast transient absorption experiment on the SDBC, which binds the carotenoid deinoxanthin, reveals a non-specific binding site that loosely binds the carotenoid, but protects the carotenoid from the outer environment.
Collapse
Affiliation(s)
- František Adamec
- Institute of Physics
- Faculty of Science
- University of South Bohemia
- České Budějovice
- Czech Republic
| | - Domenica Farci
- Department of Plant Physiology
- Warsaw University of Life Sciences - SGGW
- Warsaw
- Poland
| | - David Bína
- Institute of Chemistry
- Faculty of Science
- University of South Bohemia
- Czech Republic
- Biology Centre
| | - Radek Litvín
- Institute of Chemistry
- Faculty of Science
- University of South Bohemia
- Czech Republic
- Biology Centre
| | - Tuhin Khan
- Institute of Physics
- Faculty of Science
- University of South Bohemia
- České Budějovice
- Czech Republic
| | - Marcel Fuciman
- Institute of Physics
- Faculty of Science
- University of South Bohemia
- České Budějovice
- Czech Republic
| | - Dario Piano
- Department of Plant Physiology
- Warsaw University of Life Sciences - SGGW
- Warsaw
- Poland
- Laboratory of Photobiology and Plant Physiology
| | - Tomáš Polívka
- Institute of Physics
- Faculty of Science
- University of South Bohemia
- České Budějovice
- Czech Republic
| |
Collapse
|
34
|
Pishchalnikov RY, Yaroshevich IA, Slastnikova TA, Ashikhmin AA, Stepanov AV, Slutskaya EA, Friedrich T, Sluchanko NN, Maksimov EG. Structural peculiarities of keto-carotenoids in water-soluble proteins revealed by simulation of linear absorption. Phys Chem Chem Phys 2019; 21:25707-25719. [PMID: 31720635 DOI: 10.1039/c9cp04508b] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
To prevent irreversible damage caused by an excess of incident light, the photosynthetic machinery of many cyanobacteria uniquely utilizes the water-soluble orange carotenoid protein (OCP) containing a single keto-carotenoid molecule. This molecule is non-covalently embedded into the two OCP domains which are interconnected by a flexible linker. The phenomenon of OCP photoactivation, causing significant changes in carotenoid absorption in the orange and red form of OCP, is currently being thoroughly studied. Numerous additional spectral forms of natural and synthetic OCP-like proteins have been unearthed. The optical properties of carotenoids are strongly determined by the interaction of their electronic states with vibrational modes, the surrounding protein matrix, and the solvent. In this work, the effects of the pigment-protein interaction and vibrational relaxation in OCP were studied by computational simulation of linear absorption. Taking into account Raman spectroscopy data and applying the multimode Brownian oscillator model as well as the cumulant expansion technique, we have calculated a set of characteristic microparameters sufficient to demarcate different carotenoid states in OCP forms, using the model carotenoids spheroidene and spheroidenone in methanol/acetone solution as benchmarks. The most crucial microparameters, which determine the effect of solvent and protein environment, are the Huang-Rhys factors and the frequencies of C[double bond, length as m-dash]C and C-C stretching modes, the low-frequency mode and the FWHM due to inhomogeneous line broadening. Considering the difference of linear absorption between spheroidene and spheroidenone, which remarkably resembles the photoinduced changes of OCP absorption, and applying quantum chemical calculations, we discuss structural and functional determinants of carotenoid binding proteins.
Collapse
Affiliation(s)
- Roman Y Pishchalnikov
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilov Str., 38, 119991, Moscow, Russia.
| | | | | | | | | | | | | | | | | |
Collapse
|
35
|
|
36
|
Balevičius V, Wei T, Di Tommaso D, Abramavicius D, Hauer J, Polívka T, Duffy CDP. The full dynamics of energy relaxation in large organic molecules: from photo-excitation to solvent heating. Chem Sci 2019; 10:4792-4804. [PMID: 31183032 PMCID: PMC6521204 DOI: 10.1039/c9sc00410f] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Accepted: 03/29/2019] [Indexed: 01/04/2023] Open
Abstract
In some molecular systems, such as nucleobases, polyenes or sunscreens, substantial amounts of photo-excitation energy are dissipated on a sub-picosecond time scale. Where does this energy go or among which degrees of freedom it is being distributed at such early times?
In some molecular systems, such as nucleobases, polyenes or the active ingredients of sunscreens, substantial amounts of photo-excitation energy are dissipated on a sub-picosecond time scale, raising questions such as: where does this energy go or among which degrees of freedom it is being distributed at such early times? Here we use transient absorption spectroscopy to track excitation energy dispersing from the optically accessible vibronic subsystem into the remaining vibrational subsystem of the solute and solvent. Monitoring the flow of energy during vibrational redistribution enables quantification of local molecular heating. Subsequent heat dissipation away from the solute molecule is characterized by classical thermodynamics and molecular dynamics simulations. Hence, we present a holistic approach that tracks the internal temperature and vibronic distribution from the act of photo-excitation to the restoration of the global equilibrium. Within this framework internal vibrational redistribution and vibrational cooling are emergent phenomena. We demonstrate the validity of the framework by examining a highly controversial example, carotenoids. We show that correctly accounting for the local temperature unambiguously explains their energetically and temporally congested spectral dynamics without the ad hoc postulation of additional ‘dark’ states. An immediate further application of this approach would be to monitor the excitation and thermal dynamics of pigment–protein systems.
Collapse
Affiliation(s)
- Vytautas Balevičius
- School of Chemical and Biological Sciences , Queen Mary University of London , Mile End Road , London E1 4NS , UK .
| | - Tiejun Wei
- School of Chemical and Biological Sciences , Queen Mary University of London , Mile End Road , London E1 4NS , UK .
| | - Devis Di Tommaso
- School of Chemical and Biological Sciences , Queen Mary University of London , Mile End Road , London E1 4NS , UK .
| | - Darius Abramavicius
- Institute of Chemical Physics , Vilnius University , Sauletekio av. 9 , Vilnius , LT-10222 , Lithuania
| | - Jürgen Hauer
- Fakultät für Chemie , Technical University of Munich , Lichtenbergstraße 4 , D-85748 Garching , Germany.,Photonics Institute , TU Wien , Gußhausstraße 27 , 1040 Vienna , Austria
| | - Tomas Polívka
- Institute of Physics and Biophysics , Faculty of Science , University of South Bohemia , Branišovská 1760 , 37005 České Budějovice , Czech Republic
| | - Christopher D P Duffy
- School of Chemical and Biological Sciences , Queen Mary University of London , Mile End Road , London E1 4NS , UK .
| |
Collapse
|
37
|
Khosravi SD, Bishop MM, LaFountain AM, Turner DB, Gibson GN, Frank HA, Berrah N. Addition of a Carbonyl End Group Increases the Rate of Excited-State Decay in a Carotenoid via Conjugation Extension and Symmetry Breaking. J Phys Chem B 2018; 122:10872-10879. [PMID: 30387609 DOI: 10.1021/acs.jpcb.8b06732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Steady-state absorption, transient absorption, and transient grating spectroscopies were employed to elucidate the role of a conjugated carbonyl group in the photophysics of carotenoids. Spheroidenone and spheroidene have similar molecular structures and differ only in an additional carbonyl group in spheroidenone. Comparison of the optical responses of these two molecules under similar experimental conditions was used to understand the role of this carbonyl group in the structure. It was found that the carbonyl group has two main effects: first, it dramatically increases the depopulation rate of the excited states of the molecule. The lifetimes of all the excited states of spheroidenone were found to be almost half of the ones for spheroidene. Second, the presence of the carbonyl group in the chain alters the decay mechanism to the symmetry-forbidden S1 state of the molecule, so that the higher vibrational levels of the S1 state are populated much more effectively. It was also revealed that for both molecules, the S2/S x → S1(hot) → S1 decay process is not purely sequential and follows a branched model.
Collapse
Affiliation(s)
| | | | | | - Daniel B Turner
- Department of Chemistry , New York University , New York 10003 , United States
| | | | | | | |
Collapse
|
38
|
|
39
|
Multidimensional Vibrational Coherence Spectroscopy. Top Curr Chem (Cham) 2018; 376:35. [DOI: 10.1007/s41061-018-0213-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 07/31/2018] [Indexed: 10/28/2022]
|
40
|
Abstract
The subtle details of the mechanism of energy flow from carotenoids to chlorophylls in biological light-harvesting complexes are still not fully understood, especially in the ultrafast regime. Here we focus on the antenna complex peridinin–chlorophyll a–protein (PCP), known for its remarkable efficiency of excitation energy transfer from carotenoids—peridinins—to chlorophylls. PCP solutions are studied by means of 2D electronic spectroscopy in different experimental conditions. Together with a global kinetic analysis and multiscale quantum chemical calculations, these data allow us to comprehensively address the contribution of the potential pathways of energy flow in PCP. These data support dominant energy transfer from peridinin S2 to chlorophyll Qy state via an ultrafast coherent mechanism. The coherent superposition of the two states is functional to drive population to the final acceptor state, adding an important piece of information in the quest for connections between coherent phenomena and biological functions. Energy transfer from carotenoids to chlorophylls in light-harvesting is still not fully understood, especially in the ultrafast regime. Here, the authors investigate the coherent dynamics of this process in peridinin-chlorophyll a-protein complex via 2D electronic spectroscopy and quantum chemical calculations.
Collapse
|
41
|
Llansola-Portoles MJ, Pascal AA, Robert B. Electronic and vibrational properties of carotenoids: from in vitro to in vivo. J R Soc Interface 2018; 14:rsif.2017.0504. [PMID: 29021162 DOI: 10.1098/rsif.2017.0504] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Accepted: 09/14/2017] [Indexed: 11/12/2022] Open
Abstract
Carotenoids are among the most important organic compounds present in Nature and play several essential roles in biology. Their configuration is responsible for their specific photophysical properties, which can be tailored by changes in their molecular structure and in the surrounding environment. In this review, we give a general description of the main electronic and vibrational properties of carotenoids. In the first part, we describe how the electronic and vibrational properties are related to the molecular configuration of carotenoids. We show how modifications to their configuration, as well as the addition of functional groups, can affect the length of the conjugated chain. We describe the concept of effective conjugation length, and its relationship to the S0 → S2 electronic transition, the decay rate of the S1 energetic level and the frequency of the ν1 Raman band. We then consider the dependence of these properties on extrinsic parameters such as the polarizability of their environment, and how this information (S0 → S2 electronic transition, ν1 band position, effective conjugation length and polarizability of the environment) can be represented on a single graph. In the second part of the review, we use a number of specific examples to show that the relationships can be used to disentangle the different mechanisms tuning the functional properties of protein-bound carotenoids.
Collapse
Affiliation(s)
- Manuel J Llansola-Portoles
- Institute for Integrative Biology of the Cell (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, 91198 Gif-sur-Yvette cedex, France
| | - Andrew A Pascal
- Institute for Integrative Biology of the Cell (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, 91198 Gif-sur-Yvette cedex, France
| | - Bruno Robert
- Institute for Integrative Biology of the Cell (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, 91198 Gif-sur-Yvette cedex, France
| |
Collapse
|
42
|
Excited-state dynamics of 3,3′-dihydroxyisorenieratene and (3R,3′R)-zeaxanthin: Observation of vibrationally hot S0 species. Arch Biochem Biophys 2018; 646:137-144. [DOI: 10.1016/j.abb.2018.03.035] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 03/13/2018] [Accepted: 03/26/2018] [Indexed: 11/19/2022]
|
43
|
Hashimoto H, Uragami C, Yukihira N, Gardiner AT, Cogdell RJ. Understanding/unravelling carotenoid excited singlet states. J R Soc Interface 2018; 15:20180026. [PMID: 29643225 PMCID: PMC5938589 DOI: 10.1098/rsif.2018.0026] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Accepted: 03/16/2018] [Indexed: 11/12/2022] Open
Abstract
Carotenoids are essential light-harvesting pigments in natural photosynthesis. They absorb in the blue-green region of the solar spectrum and transfer the absorbed energy to (bacterio-)chlorophylls, and thus expand the wavelength range of light that is able to drive photosynthesis. This process is an example of singlet-singlet excitation energy transfer, and carotenoids serve to enhance the overall efficiency of photosynthetic light reactions. The photochemistry and photophysics of carotenoids have often been interpreted by referring to those of simple polyene molecules that do not possess any functional groups. However, this may not always be wise because carotenoids usually have a number of functional groups that induce the variety of photochemical behaviours in them. These differences can also make the interpretation of the singlet excited states of carotenoids very complicated. In this article, we review the properties of the singlet excited states of carotenoids with the aim of producing as coherent a picture as possible of what is currently known and what needs to be learned.
Collapse
Affiliation(s)
- Hideki Hashimoto
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Chiasa Uragami
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Nao Yukihira
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Alastair T Gardiner
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| | - Richard J Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| |
Collapse
|
44
|
Thyrhaug E, Lincoln CN, Branchi F, Cerullo G, Perlík V, Šanda F, Lokstein H, Hauer J. Carotenoid-to-bacteriochlorophyll energy transfer through vibronic coupling in LH2 from Phaeosprillum molischianum. PHOTOSYNTHESIS RESEARCH 2018; 135:45-54. [PMID: 28523607 PMCID: PMC5783993 DOI: 10.1007/s11120-017-0398-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2017] [Accepted: 05/09/2017] [Indexed: 06/07/2023]
Abstract
The peripheral light-harvesting antenna complex (LH2) of purple photosynthetic bacteria is an ideal testing ground for models of structure-function relationships due to its well-determined molecular structure and ultrafast energy deactivation. It has been the target for numerous studies in both theory and ultrafast spectroscopy; nevertheless, certain aspects of the convoluted relaxation network of LH2 lack a satisfactory explanation by conventional theories. For example, the initial carotenoid-to-bacteriochlorophyll energy transfer step necessary on visible light excitation was long considered to follow the Förster mechanism, even though transfer times as short as 40 femtoseconds (fs) have been observed. Such transfer times are hard to accommodate by Förster theory, as the moderate coupling strengths found in LH2 suggest much slower transfer within this framework. In this study, we investigate LH2 from Phaeospirillum (Ph.) molischianum in two types of transient absorption experiments-with narrowband pump and white-light probe resulting in 100 fs time resolution, and with degenerate broadband 10 fs pump and probe pulses. With regard to the split Qx band in this system, we show that vibronically mediated transfer explains both the ultrafast carotenoid-to-B850 transfer, and the almost complete lack of transfer to B800. These results are beyond Förster theory, which predicts an almost equal partition between the two channels.
Collapse
Affiliation(s)
- Erling Thyrhaug
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria
| | - Craig N Lincoln
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria
| | - Federico Branchi
- Dipartimento di Fisica, IFN-CNR, Politecnico di Milano, Piazza L. da Vinci, 32, 20133, Milan, Italy
| | - Giulio Cerullo
- Dipartimento di Fisica, IFN-CNR, Politecnico di Milano, Piazza L. da Vinci, 32, 20133, Milan, Italy
| | - Václav Perlík
- Faculty of Mathematics and Physics, Institute of Physics, Charles University, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - František Šanda
- Faculty of Mathematics and Physics, Institute of Physics, Charles University, Ke Karlovu 5, 12116, Prague, Czech Republic
| | - Heiko Lokstein
- Department of Chemical Physics and Optics, Charles University, Ke Karlovu 3, 12116, Praha 2, Czech Republic
| | - Jürgen Hauer
- Photonics Institute, TU Wien, Gußhausstraße 27, 1040, Vienna, Austria.
| |
Collapse
|
45
|
Balevičius V, Lincoln CN, Viola D, Cerullo G, Hauer J, Abramavicius D. Effects of tunable excitation in carotenoids explained by the vibrational energy relaxation approach. PHOTOSYNTHESIS RESEARCH 2018; 135:55-64. [PMID: 28741055 DOI: 10.1007/s11120-017-0423-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 07/09/2017] [Indexed: 05/20/2023]
Abstract
Carotenoids are fundamental building blocks of natural light harvesters with convoluted and ultrafast energy deactivation networks. In order to disentangle such complex relaxation dynamics, several studies focused on transient absorption measurements and their dependence on the pump wavelength. However, such findings are inconclusive and sometimes contradictory. In this study, we compare internal conversion dynamics in [Formula: see text]-carotene, pumped at the first, second, and third vibronic progression peak. Instead of employing data fitting algorithms based on global analysis of the transient absorption spectra, we apply a fully quantum mechanical model to treat the high-frequency symmetric carbon-carbon (C=C and C-C) stretching modes explicitly. This model successfully describes observed population dynamics as well as spectral line shapes in their time-dependence and allows us to reach two conclusions: Firstly, the broadening of the induced absorption upon excess excitation is an effect of vibrational cooling in the first excited state ([Formula: see text]). Secondly, the internal conversion rate between the second excited state ([Formula: see text]) and [Formula: see text] crucially depends on the relative curve displacement. The latter point serves as a new perspective on solvent- and excitation wavelength-dependent experiments and lifts contradictions between several studies found in literature.
Collapse
Affiliation(s)
- Vytautas Balevičius
- School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
| | - Craig N Lincoln
- Photonics Institute, TU Wien, Gusshausstr. 27, 1040, Vienna, Austria
| | - Daniele Viola
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Giulio Cerullo
- IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milan, Italy
| | - Jürgen Hauer
- Photonics Institute, TU Wien, Gusshausstr. 27, 1040, Vienna, Austria
| | - Darius Abramavicius
- Department of Theoretical Physics, Vilnius University, Sauletekio al. 9-III, 10222, Vilnius, Lithuania.
| |
Collapse
|
46
|
Yu J, Fu LM, Yu LJ, Shi Y, Wang P, Wang-Otomo ZY, Zhang JP. Carotenoid Singlet Fission Reactions in Bacterial Light Harvesting Complexes As Revealed by Triplet Excitation Profiles. J Am Chem Soc 2017; 139:15984-15993. [DOI: 10.1021/jacs.7b09809] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jie Yu
- Department
of Chemistry, Renmin University of China, Beijing 100872, P. R. China
| | - Li-Min Fu
- Department
of Chemistry, Renmin University of China, Beijing 100872, P. R. China
| | - Long-Jiang Yu
- Faculty
of Science, Ibaraki University, Mito 310-8512, Japan
- Department
of Biology, Faculty of Science, Okayama University, Okayama 700-8530, Japan
| | - Ying Shi
- Department
of Chemistry, Renmin University of China, Beijing 100872, P. R. China
| | - Peng Wang
- Department
of Chemistry, Renmin University of China, Beijing 100872, P. R. China
| | | | - Jian-Ping Zhang
- Department
of Chemistry, Renmin University of China, Beijing 100872, P. R. China
| |
Collapse
|
47
|
Gacek DA, Moore AL, Moore TA, Walla PJ. Two-Photon Spectra of Chlorophylls and Carotenoid–Tetrapyrrole Dyads. J Phys Chem B 2017; 121:10055-10063. [DOI: 10.1021/acs.jpcb.7b08502] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel A. Gacek
- Technische Universität Braunschweig, Institute for Physical and Theoretical Chemistry, Department of Biophysical
Chemistry, Gaußstraße.
17, 38106 Braunschweig, Germany
| | - Ana L. Moore
- School
of Molecular Sciences and Center for Bioenergy and Photosynthesis, Arizona State University, Tempe, Arizona 85287-1604, United States
| | - Thomas A. Moore
- School
of Molecular Sciences and Center for Bioenergy and Photosynthesis, Arizona State University, Tempe, Arizona 85287-1604, United States
| | - Peter Jomo Walla
- Technische Universität Braunschweig, Institute for Physical and Theoretical Chemistry, Department of Biophysical
Chemistry, Gaußstraße.
17, 38106 Braunschweig, Germany
| |
Collapse
|
48
|
Kuznetsova V, Southall J, Cogdell RJ, Fuciman M, Polívka T. Spectroscopic properties of the S1 state of linear carotenoids after excess energy excitation. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.03.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
49
|
Chorošajev V, Marčiulionis T, Abramavicius D. Temporal dynamics of excitonic states with nonlinear electron-vibrational coupling. J Chem Phys 2017; 147:074114. [DOI: 10.1063/1.4985910] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Affiliation(s)
- Vladimir Chorošajev
- Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio 9-III, 10222 Vilnius, Lithuania
| | - Tomas Marčiulionis
- Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio 9-III, 10222 Vilnius, Lithuania
| | - Darius Abramavicius
- Department of Theoretical Physics, Faculty of Physics, Vilnius University, Sauletekio 9-III, 10222 Vilnius, Lithuania
| |
Collapse
|
50
|
Niedzwiedzki DM, Swainsbury DJK, Martin EC, Hunter CN, Blankenship RE. Origin of the S* Excited State Feature of Carotenoids in Light-Harvesting Complex 1 from Purple Photosynthetic Bacteria. J Phys Chem B 2017; 121:7571-7585. [PMID: 28719215 DOI: 10.1021/acs.jpcb.7b04251] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
This spectroscopic study investigates the origin of the transient feature of the S* excited state of carotenoids bound in LH1 complexes from purple bacteria. The studies were performed on two RC-LH1 complexes from Rba. sphaeroides strains that bound carotenoids with different carbon-carbon double bond conjugation N, neurosporene (N = 9) and spirilloxanthin (N = 13). The S* transient spectral feature, originally associated with an elusive and optically silent excited state of spirilloxanthin in the LH1 complex, may be successfully explained and mimicked without involving any unknown electronic state. The spectral and temporal characteristics of the S* feature suggest that it is associated with triplet-triplet annihilation of carotenoid triplets formed after direct excitation of the molecule via a singlet fission mechanism. Depending on pigment homogeneity and carotenoid assembly in the LH1 complex, the spectro-temporal component associated with triplet-triplet annihilation may simply resolve a pure T-S spectrum of a carotenoid. In some cases (like spirilloxanthin), the T-S feature will also be accompanied by a carotenoid Stark spectrum and/or residual transient absorption of minor carotenoid species bound into LH1 antenna complex.
Collapse
Affiliation(s)
| | - David J K Swainsbury
- Department of Molecular Biology and Biotechnology, University of Sheffield , Sheffield S10 2TN, United Kingdom
| | - Elizabeth C Martin
- Department of Molecular Biology and Biotechnology, University of Sheffield , Sheffield S10 2TN, United Kingdom
| | - C Neil Hunter
- Department of Molecular Biology and Biotechnology, University of Sheffield , Sheffield S10 2TN, United Kingdom
| | | |
Collapse
|