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For: Liu Z, Lv J, Zhang Z, Li H, Yang B, Chen W, Dai X, Li X, Yang S, Liu L, Ou L, Ma Y, Zou X. Integrative Transcriptome and Proteome Analysis Identifies Major Metabolic Pathways Involved in Pepper Fruit Development. J Proteome Res 2019;18:982-994. [DOI: 10.1021/acs.jproteome.8b00673] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Number Cited by Other Article(s)
1
Xia P, Zhou S, Zhao X, Zhao C. Characterization and Expression Analysis of Sugar Transporters through Partial Least Square Structural Equation Model (PLS-SEM) Revealed Their Role in Pepper (Capsicum annuum L.). PLANTS (BASEL, SWITZERLAND) 2024;13:1825. [PMID: 38999665 PMCID: PMC11243835 DOI: 10.3390/plants13131825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 06/29/2024] [Accepted: 07/01/2024] [Indexed: 07/14/2024]
2
de Aguiar ÉS, Dias AN, Sousa RM, Germano TA, de Sousa RO, Miranda RDS, Costa JH, dos Santos CP. Genome and Transcriptome Analyses of Genes Involved in Ascorbate Biosynthesis in Pepper Indicate Key Genes Related to Fruit Development, Stresses, and Phytohormone Exposures. PLANTS (BASEL, SWITZERLAND) 2023;12:3367. [PMID: 37836106 PMCID: PMC10574469 DOI: 10.3390/plants12193367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 09/10/2023] [Accepted: 09/20/2023] [Indexed: 10/15/2023]
3
Du K, Zhao W, Lv Z, Liu L, Ali S, Chen B, Hu W, Zhou Z, Wang Y. Auxin and abscisic acid play important roles in promoting glucose metabolism of reactivated young kernels of maize (Zea mays L.). PHYSIOLOGIA PLANTARUM 2023;175:e14019. [PMID: 37882255 DOI: 10.1111/ppl.14019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 08/09/2023] [Accepted: 08/24/2023] [Indexed: 10/27/2023]
4
Heng Z, Xu X, Xu X, Li Y, Wang H, Huang W, Yan S, Li T. Integrated transcriptomic and metabolomic analysis of chili pepper fruits provides new insight into the regulation of the branched chain esters and capsaicin biosynthesis. Food Res Int 2023;169:112856. [PMID: 37254430 DOI: 10.1016/j.foodres.2023.112856] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 04/14/2023] [Accepted: 04/16/2023] [Indexed: 06/01/2023]
5
Huang C, Li P, Yang X, Niu T, Zhao S, Yang L, Wang R, Wang Z. Integrated transcriptome and proteome analyses reveal candidate genes for ginsenoside biosynthesis in Panax japonicus C. A. Meyer. FRONTIERS IN PLANT SCIENCE 2023;13:1106145. [PMID: 36699857 PMCID: PMC9868605 DOI: 10.3389/fpls.2022.1106145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
6
Jaiswal V, Rawoof A, Gahlaut V, Ahmad I, Chhapekar SS, Dubey M, Ramchiary N. Integrated analysis of DNA methylation, transcriptome, and global metabolites in interspecific heterotic Capsicum F1 hybrid. iScience 2022;25:105318. [PMID: 36304106 PMCID: PMC9593261 DOI: 10.1016/j.isci.2022.105318] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 06/04/2022] [Accepted: 10/06/2022] [Indexed: 11/19/2022]  Open
7
Ge S, Qin K, Ding S, Yang J, Jiang L, Qin Y, Wang R. Gas Chromatography-Mass Spectrometry Metabolite Analysis Combined with Transcriptomic and Proteomic Provide New Insights into Revealing Cuticle Formation during Pepper Development. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022;70:12383-12397. [PMID: 36148491 DOI: 10.1021/acs.jafc.2c04522] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
8
Cai Y, Xu M, Liu J, Zeng H, Song J, Sun B, Chen S, Deng Q, Lei J, Cao B, Chen C, Chen M, Chen K, Chen G, Zhu Z. Genome-wide analysis of histone acetyltransferase and histone deacetylase families and their expression in fruit development and ripening stage of pepper (Capsicum annuum). FRONTIERS IN PLANT SCIENCE 2022;13:971230. [PMID: 36161016 PMCID: PMC9490122 DOI: 10.3389/fpls.2022.971230] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 08/09/2022] [Indexed: 06/16/2023]
9
Song J, Campbell L, Vinqvist-Tymchuk M. Application of quantitative proteomics to investigate fruit ripening and eating quality. JOURNAL OF PLANT PHYSIOLOGY 2022;276:153766. [PMID: 35921768 DOI: 10.1016/j.jplph.2022.153766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 06/30/2022] [Accepted: 07/09/2022] [Indexed: 06/15/2023]
10
Sun P, Ma Q, Zhang L. Comprehensive acetyl-proteomic analysis of Cytospora mali provides insight into its response to the biocontrol agent Bacillus velezensis L-1. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.999510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
11
Chen X, Han J, Wang S. Integrated evolutionary analysis reveals the resistance risk to antimicrobial peptides in Staphylococcus aureus. Food Control 2022. [DOI: 10.1016/j.foodcont.2022.108966] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
12
Zou W, Zhao C, Zhang X, Jin C, Jiang K, Zhou Q. Mitigation Effects and Associated Mechanisms of Environmentally Relevant Thiols on the Phytotoxicity of Molybdenum Disulfide Nanosheets. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022;56:9556-9568. [PMID: 35576172 DOI: 10.1021/acs.est.1c08534] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
13
Lozada DN, Bosland PW, Barchenger DW, Haghshenas-Jaryani M, Sanogo S, Walker S. Chile Pepper (Capsicum) Breeding and Improvement in the "Multi-Omics" Era. FRONTIERS IN PLANT SCIENCE 2022;13:879182. [PMID: 35592583 PMCID: PMC9113053 DOI: 10.3389/fpls.2022.879182] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 04/12/2022] [Indexed: 06/15/2023]
14
Yan H, Nie Y, Cui K, Sun J. Integrative Transcriptome and Metabolome Profiles Reveal Common and Unique Pathways Involved in Seed Initial Imbibition Under Artificial and Natural Salt Stresses During Germination of Halophyte Quinoa. FRONTIERS IN PLANT SCIENCE 2022;13:853326. [PMID: 35498713 PMCID: PMC9039654 DOI: 10.3389/fpls.2022.853326] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2022] [Accepted: 02/28/2022] [Indexed: 05/31/2023]
15
Momo J, Kumar A, Islam K, Ahmad I, Rawoof A, Ramchiary N. A comprehensive update on Capsicum proteomics: Advances and future prospects. J Proteomics 2022;261:104578. [DOI: 10.1016/j.jprot.2022.104578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 03/27/2022] [Accepted: 03/28/2022] [Indexed: 10/18/2022]
16
Ye Z, Yu J, Yan W, Zhang J, Yang D, Yao G, Liu Z, Wu Y, Hou X. Integrative iTRAQ-based proteomic and transcriptomic analysis reveals the accumulation patterns of key metabolites associated with oil quality during seed ripening of Camellia oleifera. HORTICULTURE RESEARCH 2021;8:157. [PMID: 34193845 PMCID: PMC8245520 DOI: 10.1038/s41438-021-00591-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 04/28/2021] [Accepted: 05/04/2021] [Indexed: 05/12/2023]
17
Pazhamala LT, Kudapa H, Weckwerth W, Millar AH, Varshney RK. Systems biology for crop improvement. THE PLANT GENOME 2021;14:e20098. [PMID: 33949787 DOI: 10.1002/tpg2.20098] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Accepted: 03/09/2021] [Indexed: 05/19/2023]
18
Huang X, Hou Z. Label-free quantitative proteomics analysis of jujube (Ziziphus jujuba Mill.) during different growth stages. RSC Adv 2021;11:22106-22119. [PMID: 35480818 PMCID: PMC9034241 DOI: 10.1039/d1ra02989d] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Accepted: 06/15/2021] [Indexed: 01/08/2023]  Open
19
RNAseq and quantitative proteomic analysis of Dictyostelium knock-out cells lacking the core autophagy proteins ATG9 and/or ATG16. BMC Genomics 2021;22:444. [PMID: 34126926 PMCID: PMC8204557 DOI: 10.1186/s12864-021-07756-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 05/26/2021] [Indexed: 01/09/2023]  Open
20
Wang F, Ge S, Xu X, Xing Y, Du X, Zhang X, Lv M, Liu J, Zhu Z, Jiang Y. Multiomics Analysis Reveals New Insights into the Apple Fruit Quality Decline under High Nitrogen Conditions. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021;69:5559-5572. [PMID: 33945277 DOI: 10.1021/acs.jafc.1c01548] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
21
Tartaglia M, Sciarrillo R, Zuzolo D, Amoresano A, Illiano A, Pinto G, Jorrín-Novo JV, Guarino C. Why Consumers Prefer Green Friariello Pepper: Changes in the Protein and Metabolite Profiles Along the Ripening. FRONTIERS IN PLANT SCIENCE 2021;12:668562. [PMID: 33995464 PMCID: PMC8121147 DOI: 10.3389/fpls.2021.668562] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Accepted: 04/07/2021] [Indexed: 06/12/2023]
22
Liu N, Qin L, Mazhar M, Miao S. Integrative transcriptomic-proteomic analysis revealed the flavor formation mechanism and antioxidant activity in rice-acid inoculated with Lactobacillus paracasei and Kluyveromyces marxianus. J Proteomics 2021;238:104158. [PMID: 33631365 DOI: 10.1016/j.jprot.2021.104158] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 02/10/2021] [Accepted: 02/15/2021] [Indexed: 11/18/2022]
23
Zou W, Li X, Li C, Sun Y, Zhang X, Jin C, Jiang K, Zhou Q, Hu X. Influence of Size and Phase on the Biodegradation, Excretion, and Phytotoxicity Persistence of Single-Layer Molybdenum Disulfide. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020;54:12295-12306. [PMID: 32852947 DOI: 10.1021/acs.est.0c02642] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
24
Chen J, Gao G, Chen P, Chen K, Wang X, Bai L, Yu C, Zhu A. Integrative Transcriptome and Proteome Analysis Identifies Major Molecular Regulation Pathways Involved in Ramie (Boehmeria nivea (L.) Gaudich) under Nitrogen and Water Co-Limitation. PLANTS 2020;9:plants9101267. [PMID: 32992865 PMCID: PMC7650756 DOI: 10.3390/plants9101267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 09/22/2020] [Accepted: 09/22/2020] [Indexed: 11/21/2022]
25
Zhang Y, Yao W, Wang F, Su Y, Zhang D, Hu S, Zhang X. AGC protein kinase AGC1-4 mediates seed size in Arabidopsis. PLANT CELL REPORTS 2020;39:825-837. [PMID: 32219503 DOI: 10.1007/s00299-020-02533-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Accepted: 03/13/2020] [Indexed: 05/14/2023]
26
Huang D, Wang Y, Lv J, Yan Y, Hu Y, Liu C, Zhang F, Wang J, Hao D. Proteomic profiling analysis of postmenopausal osteoporosis and osteopenia identifies potential proteins associated with low bone mineral density. PeerJ 2020;8:e9009. [PMID: 32328356 PMCID: PMC7164430 DOI: 10.7717/peerj.9009] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 03/27/2020] [Indexed: 12/12/2022]  Open
27
Liu Z, Lv J, Liu Y, Wang J, Zhang Z, Chen W, Song J, Yang B, Tan F, Zou X, Ou L. Comprehensive Phosphoproteomic Analysis of Pepper Fruit Development Provides Insight into Plant Signaling Transduction. Int J Mol Sci 2020;21:ijms21061962. [PMID: 32183026 PMCID: PMC7139842 DOI: 10.3390/ijms21061962] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 03/10/2020] [Accepted: 03/11/2020] [Indexed: 12/29/2022]  Open
28
Liu Z, Zhao L, Zhang Q, Huo N, Shi X, Li L, Jia L, Lu Y, Peng Y, Song Y. Proteomics-Based Mechanistic Investigation of Escherichia coli Inactivation by Pulsed Electric Field. Front Microbiol 2019;10:2644. [PMID: 31781086 PMCID: PMC6857472 DOI: 10.3389/fmicb.2019.02644] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Accepted: 10/30/2019] [Indexed: 11/21/2022]  Open
29
Proteomic analysis of sheep uterus reveals its role in prolificacy. J Proteomics 2019;210:103526. [PMID: 31605788 DOI: 10.1016/j.jprot.2019.103526] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 08/19/2019] [Accepted: 09/04/2019] [Indexed: 12/23/2022]
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