ATR-FTIR spectroscopy study of the influence of pH and contact time on the adhesion of Shewanella putrefaciens bacterial cells to the surface of hematite

Biosynthesis of silver nanoparticles using Burkholderia contaminans ZCC and mechanistic analysis at the proteome level

The biogenic synthesis of silver nanoparticles (AgNPs) by microorganisms has been a subject of increasing attention. Despite extensive studies on this biosynthetic pathway, the mechanisms underlying the involvement of proteins and enzymes in AgNPs production have not been fully explored. Herein, we reported that Burkholderia contaminans ZCC was able to reduce Ag+ to AgNPs with a diameter of (10±5) nm inside the cell. Exposure of B. contaminans ZCC to Ag+ ions led to significant changes in the functional groups of cellular proteins, with approximately 5.72% of the (C-OH) bonds being converted to (C-C/C-H) (3.61%) and CO (2.11%) bonds, and 4.52% of the CO (carbonyl) bonds being converted to (C-OH) bonds. Furthermore, the presence of Ag+ and AgNPs induced the ability of extracellular electron transfer for ZCC cells via specific membrane proteins, but this did not occur in the absence of Ag+ ions. Proteomic analysis of the proteins and enzymes involved in heavy metal efflux systems, protein secretion system, oxidative phosphorylation, intracellular electron transfer chain, and glutathione metabolism suggests that glutathione S-transferase and ubiquinol-cytochrome c reductase iron-sulfur subunit play importance roles in the biosynthesis of AgNPs. These findings contribute to a deeper understanding of the functions exerted by glutathione S-transferase and ferredoxin-thioredoxin reductase iron-sulfur subunits in the biogenesis of AgNPs, thereby hold immense potential for optimizing biotechnological techniques aimed at enhancing the yield and purity of biosynthetic AgNPs.

Dissolved organic matter, calcium ion and extracellular polymeric substances on living associated bacteria of Microcystis colony are crucial for unicellular Microcystis to efficiently form colonies

Microcystis typically forms colonies under natural conditions, which contributes to occurrence and prevalence of algal blooms. The colonies consist of Microcystis and associated bacteria (AB), embedded in extracellular polymeric substances (EPS). Previous studies indicate that AB can induce Microcystis to form colonies, however the efficiency is generally low and results in a uniform morphotype. In this study, by using filtrated natural water, several AB strains induced unicellular M. aeruginosa to form colonies resembling several Microcystis morphotypes. The mechanisms were investigated with Methylobacterium sp. Z5. Ca2+ was necessary for Z5 to induce Microcystis to form colonies, while dissolved organic matters (DOM) facilitated AB to agglomerate Microcystis to form large colonies. EPS of living Z5, mainly the aromatic protein components, played a key role in colony induction. Z5 initially aggregated Microcystis via the bridging effects of Ca2+ and DOM, followed by the induction of EPS synthesis and secretion in Microcystis. In this process, the colony forming mode shifted from cell adhesion to a combination of cell adhesion and cell division. Intriguingly, Z5 drove the genomic rearrangement of Microcystis by upregulating some transposase genes. This study unveiled a novel mechanism about Microcystis colony formation and identified a new driver of Microcystis genomic evolution.

Biotransformation of Chlorpyrifos Shewanella oneidensis MR-1 in the Presence of Goethite: Experimental Optimization and Degradation Products

In this study, the degradation system of Shewanella oneidensis MR-1 and goethite was constructed with chlorpyrifos as the target contaminant. The effects of initial pH, contaminant concentration, and temperature on the removal rate of chlorpyrifos during the degradation process were investigated. The experimental conditions were optimized by response surface methodology with a Box-Behnken design (BBD). The results show that the removal rate of chlorpyrifos is 75.71% at pH = 6.86, an initial concentration of 19.18 mg·L-1, and a temperature of 30.71 °C. LC-MS/MS analyses showed that the degradation products were C4H11O3PS, C7H7Cl3NO4P, C9H11Cl2NO3PS, C7H7Cl3NO3PS, C9H11Cl3NO4P, C4H11O2PS, and C5H2Cl3NO. Presumably, the degradation pathways involved are: enzymatic degradation, hydrolysis, dealkylation, desulfur hydrolysis, and dechlorination. The findings of this study demonstrate the efficacy of the goethite/S. oneidensis MR-1 complex system in the removal of chlorpyrifos from water. Consequently, this research contributes to the establishment of a theoretical framework for the microbial remediation of organophosphorus pesticides in aqueous environments.

Biofilm formation and antioxidation were responsible for the increased resistance of N. eutropha to chloramination for drinking water treatment

Chloramination is an effective strategy for eliminating pathogens from drinking water and repressing their regrowth in water distribution systems. However, the inevitable release of NH4+ potentially promotes nitrification and associated ammonia-oxidizing bacteria (AOB) contamination. In this study, AOB (Nitrosomona eutropha) were isolated from environmental water and treated with two disinfection stages (chloramine disinfection and chloramine residues) to investigate the occurrence mechanisms of AOB in chloramination. The results showed that N. eutropha had considerable resistance to monochloramine compared to Escherichia coli, whose inactivation rate constant was 19.4-fold lower. The higher resistance was attributed to high levels of extracellular polymer substances (EPS) in AOB, which contribute to AOB surviving disinfection and entering the distribution system. In AOB response to the chloramine residues stage, the respiratory activity of N. eutropha remained at a high level after three days of continuous exposure to high chloramine residue concentrations (0.5-1.5 mg/L). Reverse transcription-quantitative polymerase chain reaction (RT-qPCR) suggested that the mechanism of N. eutropha tolerance involved a significantly high expression of the intracellular oxidative stress-regulating (sodB, txrA) and protein-related (NE1545, NE1546) genes. Additionally, this process enhanced EPS secretion and promoted biofilm formation. Adhesion predictions based on the XDLVO theory corroborated the trend of biofilm formation. Overall, the naturally higher resistance contributed to the survival of AOB in primary disinfection; the enhanced antioxidant response of surviving N. eutropha accompanied by biofilm formation was responsible for their increased resistance to the residual chloramines.

Adaptive mechanism of the marine bacterium Pseudomonas sihuiensis-BFB-6S towards pCO2 variation: Insights into synthesis of extracellular polymeric substances and physiochemical modulation

Marine bacteria can adapt to various extreme environments by the production of extracellular polymeric substances (EPS). Throughout this investigation, impact of variable pCO2 levels on the metabolic activity and physiochemical modulation in EPS matrix of marine bacterium Pseudomonas sihuiensis - BFB-6S was evaluated using a fluorescence microscope, excitation-emission matrix (EEM), 2D-Fourier transform infrared correlation spectroscopy (2D-ATR-FTIR-COS), FT-NMR and TGA-DSC. From the results at higher pCO2 levels, there was a substantial reduction in EPS production by 58-62.8 % (DW). In addition to the biochemical composition of EPS, reduction in carbohydrates (8.7-47.6 %), protein (7.1-91.5 %), and lipids (16.9-68.6 %) content were observed at higher pCO2 levels. Functional discrepancies of fluorophores (tyrosine and tryptophan-like) in EPS, speckled differently in response to variable pCO2. The 2D-ATR-FTIR-COS analysis revealed functional amides (CN, CC, CO bending, -NH bending in amines) of EPS were preferentially altered, which led to the domination of polysaccharides relevant functional groups at higher pCO2. 1H NMR analysis of EPS confirmed the absence of chemical signals from H-C-COOH of proteins, α, β anomeric protons, and acetyl group relevant region at higher pCO2 levels. These findings can contribute new insights into the influence of pCO2 on the adaptation of marine microbes in future ocean acidification scenarios.

Antimicrobial susceptibility testing using infrared attenuated total reflection (IR-ATR) spectroscopy to monitor metabolic activity

Fast and accurate detection of antimicrobial resistance in pathogens remains a challenge, and with the increase in antimicrobial resistance due to mis- and overuse of antibiotics, it has become an urgent public health problem. We demonstrate how infrared attenuated total reflection (IR-ATR) can be used as a simple method for assessment of bacterial susceptibility to antibiotics. This is achieved by monitoring the metabolic activities of bacterial cells via nutrient consumption and using this as an indicator of bacterial viability. Principal component analysis of the obtained spectra provides a tool for fast and simple discrimination of antimicrobial resistance in the acquired data. We demonstrate this concept using four bacterial strains and four different antibiotics, showing that the change in glucose concentration in the growth medium after 2 h, as monitored by IR-ATR, can be used as a spectroscopic diagnostic technique, to reduce detection time and to improve quality in the assessment of antimicrobial resistance in pathogens.

Biochemical characterization and mercury methylation capacity of Geobacter sulfurreducens biofilms grown in media containing iron hydroxide or fumarate

Geobacter species are common in iron-rich environments and can contribute to formation of methylmercury (MeHg), a neurotoxic compound with high bioaccumulation potential formed as a result of bacterial and archaeal physiological activity. Geobacter sulfurreducens can utilize various electron acceptors for growth including iron hydroxides or fumarate. However, it remains poorly understood how the growth on these compounds affects physiological properties of bacterial cells in biofilms, including the capacity to produce MeHg. The purpose of this study was to determine changes in the biochemical composition of G. sulfurreducens during biofilm cultivation in media containing iron hydroxide or fumarate, and to quantify mercury (Hg) methylation capacity of the formed biofilms. Biofilms were characterized by Fourier-transform infrared spectroscopy in the attenuated total reflection mode (ATR-FTIR), Resonance Raman spectroscopy and confocal laser scanning microscopy. MeHg formation was quantified by mass spectrometry after incubation of biofilms with 100 nM Hg. The results of ATR-FTIR experiments showed that in presence of fumarate, G. sulfurreducens biofilm formation was accompanied by variation in content of the energy-reserve polymer glycogen over time, which could be cancelled by the addition of supplementary nutrients (yeast extract). In contrast, biofilms cultivated on Fe(III) hydroxide did not accumulate glycogen. The ATR-FTIR results further suggested that Fe(III) hydroxide surfaces bind cells via phosphate and carboxylate groups of bacteria that form complexes with iron. Furthermore, biofilms grown on Fe(III) hydroxide had higher fraction of oxidized cytochromes and produced two to three times less biomass compared to conditions with fumarate. Normalized to biofilm volume, the content of MeHg was similar in assays with biofilms grown on Fe(III) hydroxide and on fumarate (with yeast extract and without). These results suggest that G. sulfurreducens biofilms produce MeHg irrespectively from glycogen content and cytochrome redox state in the cells, and warrant further investigation of the mechanisms controlling this process.

An experimental study of the effects of bacteria on asphaltene adsorption and wettability alteration of dolomite and quartz

The adsorption of asphaltene on the rock surface and the changes in its wettability are very relevant issues in flow assurance and oil recovery studies, and for carbonate reservoirs, they are even more important. During microbial enhanced oil recovery (MEOR) processes, wettability alteration is considered a crucial mechanism leading to improved oil recovery. Therefore, it is essential to understand the mechanisms of surface wettability changes by bacteria and biosurfactants and find new and reliable methods to prevent asphaltene adsorption. Hence, the main aim of this research was to investigate the effect of a mixture of thiobacillus thiooxidans and thiobacillus ferooxidans microorganisms with an optimum effective temperature of around 30 °C (referred to as mesophilic bacteria), as well as a mixture of two moderate thermophiles Sulfobacillus thermosulfidooxidans for operating temperatures around 50 °C (referred to as moderately thermophilic bacteria) on the adsorption of asphaltene samples isolated from two different crude oils onto main reservoir minerals (i.e., quartz and dolomite). The results indicated that after two weeks of mineral aging in moderate thermophilic bacteria, the adsorption of asphaltene on both minerals increased between 180 and 290%. Fourier-transform infrared spectroscopy (FTIR) analysis for quartz and dolomite samples demonstrated that after aging in bacterial solution, bonds related to the adsorption of bacterial cells and biosurfactant production appear, which are the main factors of change in wettability. Alteration in wettability towards hydrophilicity expands hydrogen bonds on the surface, thus improving asphaltene adsorption due to polar interaction. Asphaltene 1 changed the contact angle of dolomite from 53.85° to 90.51° and asphaltene 2 from 53.85° to 100.41°. However, both strains of bacteria caused a strong water-wetting effect on the dolomite rock samples. The influence of moderate thermophilic bacteria on surface wettability is more significant than that of mesophilic bacteria, which may be caused by the high protein content of these bacteria, which expands hydrogen bonding with the surface. Adsorption of asphaltenes on dolomite rocks previously aged with bacteria showed that the wetted rock samples retained their water-wet state. This study highlights the dual impact of the used microorganisms. On one hand, they significantly reduce contact angles and shift wettability towards a strongly water-wet condition, a crucial positive factor for MEOR. On the other hand, these microorganisms can elevate the adsorption of asphaltenes on reservoir rock minerals, posing a potential challenge in the form of formation damage, particularly in low-permeability reservoirs.

Label-free visualization of photosynthetic microbial biofilms using mid-infrared photothermal and autofluorescence imaging

The formation of photosynthetic microbial biofilms comprising multispecies biomolecules, such as extracellular polymeric substances (EPSs), and microbial cells play pivotal roles in maintaining or stimulating their biological functions. Although there are numerous studies on photosynthetic microbial biofilms, the spatial distribution of EPS components that are vital for microbial biofilm formation, such as exopolysaccharides and proteins, is not well understood. Visualization of photosynthetic microbial biofilms requires label-free methods, because labelling EPSs results in structural changes or aggregation. Raman spectroscopy is useful for label-free visualization of biofilm constituents based on chemical contrast. However, interference resulting from the bright autofluorescence of photosynthetic molecules and the low detection efficiency of Raman scattering make visualization a challenge. Herein, we visualized photosynthetic microbial biofilms in a label-free manner using a super-resolution optical infrared absorption imaging technique, called mid-infrared photothermal (MIP) microscopy. By leveraging the advantages of MIP microscopy, such as its sub-micrometer spatial resolution, autofluorescence-free features, and high detection sensitivity, the distribution of cyanobacteria and their extracellular polysaccharides in the biofilm matrix were successfully visualized. This showed that cyanobacterial cells were aligned along acidic/sulfated polysaccharides in the extracellular environment. Furthermore, spectroscopic analyses elucidated that during formation of biofilms, sulfated polysaccharides initially form linear structures followed by entrapment of cyanobacterial cells. The present study provides the foundation for further studies on the formation, structure, and biological functions of microbial biofilms.

Inactivation of Escherichia Coli by mixed-valent nanoparticles in-situ generated during Fe electrocoagulation

Electrocoagulation (EC) is promising for the removal of chemical and microbial contaminants. Although the removal of pathogens from wastewater is efficient by conventional Fe-EC in the presence of dissolved oxygen (DO), the non-inactivated pathogens in the sediment still have a risk. Herein, the inactivation of Escherichia coli (E. coli) with the mixed-valent iron nanoparticles, magnetite and green rust (GR), in-situ generated from Fe-EC process in the absence of DO was investigated. The inactivation efficiency was significantly higher with magnetite (4.7 log cells) and GR (3.2 log cells) compared with FeOOH (0.7-1.7 log cells) generated at 50 mA in 10 min. The unstable in-situ generated magnetite with positive charges was prone to adsorb onto E. coli, damaging the cell membrane, inactivating the bacteria. The unstable in-situ generated GR was prone to coagulate with E. coli, delivering Fe2+ into the cell and inducing the generation of endogenous ROS, inactivating the bacteria. Fe-EC in the absence of DO was proved to be efficient for the inactivation of E. coli (4.2-4.3 log cells) in real wastewater. These findings identified the ignored inactivation effect and mechanism of E. coli with magnetite and GR generated in situ from Fe-EC process, which will provide theoretical support for real applications.

Applications of Fourier Transform-Infrared spectroscopy in microbial cell biology and environmental microbiology: advances, challenges, and future perspectives

Microorganisms play pivotal roles in shaping ecosystems and biogeochemical cycles. Their intricate interactions involve complex biochemical processes. Fourier Transform-Infrared (FT-IR) spectroscopy is a powerful tool for monitoring these interactions, revealing microorganism composition and responses to the environment. This review explores the diversity of applications of FT-IR spectroscopy within the field of microbiology, highlighting its specific utility in microbial cell biology and environmental microbiology. It emphasizes key applications such as microbial identification, process monitoring, cell wall analysis, biofilm examination, stress response assessment, and environmental interaction investigation, showcasing the crucial role of FT-IR in advancing our understanding of microbial systems. Furthermore, we address challenges including sample complexity, data interpretation nuances, and the need for integration with complementary techniques. Future prospects for FT-IR in environmental microbiology include a wide range of transformative applications and advancements. These include the development of comprehensive and standardized FT-IR libraries for precise microbial identification, the integration of advanced analytical techniques, the adoption of high-throughput and single-cell analysis, real-time environmental monitoring using portable FT-IR systems and the incorporation of FT-IR data into ecological modeling for predictive insights into microbial responses to environmental changes. These innovative avenues promise to significantly advance our understanding of microorganisms and their complex interactions within various ecosystems.

Oxide- and Silicate-Water Interfaces and Their Roles in Technology and the Environment

Interfacial reactions drive all elemental cycling on Earth and play pivotal roles in human activities such as agriculture, water purification, energy production and storage, environmental contaminant remediation, and nuclear waste repository management. The onset of the 21st century marked the beginning of a more detailed understanding of mineral aqueous interfaces enabled by advances in techniques that use tunable high-flux focused ultrafast laser and X-ray sources to provide near-atomic measurement resolution, as well as by nanofabrication approaches that enable transmission electron microscopy in a liquid cell. This leap into atomic- and nanometer-scale measurements has uncovered scale-dependent phenomena whose reaction thermodynamics, kinetics, and pathways deviate from previous observations made on larger systems. A second key advance is new experimental evidence for what scientists hypothesized but could not test previously, namely, interfacial chemical reactions are frequently driven by "anomalies" or "non-idealities" such as defects, nanoconfinement, and other nontypical chemical structures. Third, progress in computational chemistry has yielded new insights that allow a move beyond simple schematics, leading to a molecular model of these complex interfaces. In combination with surface-sensitive measurements, we have gained knowledge of the interfacial structure and dynamics, including the underlying solid surface and the immediately adjacent water and aqueous ions, enabling a better definition of what constitutes the oxide- and silicate-water interfaces. This critical review discusses how science progresses from understanding ideal solid-water interfaces to more realistic systems, focusing on accomplishments in the last 20 years and identifying challenges and future opportunities for the community to address. We anticipate that the next 20 years will focus on understanding and predicting dynamic transient and reactive structures over greater spatial and temporal ranges as well as systems of greater structural and chemical complexity. Closer collaborations of theoretical and experimental experts across disciplines will continue to be critical to achieving this great aspiration.

Insights into the Superior Bioavailability of Biogenic Sulfur from the View of Its Unique Properties: The Key Role of Trace Organic Substances

Elemental sulfur (S0) is widely utilized in environmental pollution control, while its low bioavailability has become a bottleneck for S0-based biotechnologies. Biogenic sulfur (bio-S0) has been demonstrated to have superior bioavailability, while little is known about its mechanisms thus far. This study investigated the bioavailability and relevant properties of bio-S0 based on the denitrifying activity of Thiobacillus denitrificans with chemical sulfur (chem-S0) as the control. It was found that the conversion rate and removal efficiency of nitrate in the bio-S0 system were 2.23 and 2.04 times those of the chem-S0 system. Bio-S0 was not pure orthorhombic sulfur [S: 96.88 ± 0.25% (w/w)]. Trace organic substances detected on the bio-S0 surface were revealed to contribute to its hydrophilicity, resulting in better dispersibility in the aqueous liquid. In addition, the adhesion force of T. denitrificans on bio-S0 was 1.54 times that of chem-S0, endowing a higher bacterial adhesion efficiency on the sulfur particle. The weaker intermolecular binding force due to the low crystallinity of bio-S0 led to enhanced cellular uptake by attached bacteria. The mechanisms for the superior bioavailability of bio-S0 were further proposed. This study provides a comprehensive view of the superior bioavailability of bio-S0 and is beneficial to developing high-quality sulfur resources.

Contrasting behaviors of pre-ozonation on ceramic membrane biofouling: Early stage vs late stage

Pre-ozonation coupled with ceramic membrane filtration has been widely used to alleviate membrane fouling. However, information on the efficiency and underlying mechanism of pre-ozonation in the evolution of ceramic membrane biofouling is limited. Herein, filtration experiments with a synthesis wastewater containing activated sludge were conducted in a cross-flow system to evaluate the effects of pre-ozonation on ceramic membrane biofouling. Results of flux tests show that pre-ozonation aggravated biofouling at the early stage, but alleviated the biofouling at the late stage. In situ FTIR spectra show that the aggravated biofouling with pre-ozonation was mainly caused by the enhanced complexation between phosphate group from DNA and Al₂O₃ surface and the increased rigid of proteins' structure. At the early stage, more severe pore blockage further substantiated the higher permeate resistance. By contrast, more dead cells were observed on membrane surface at the late stage, indicating the prevention of biofouling development after long-term pre-ozonation. Additionally, the structures and compositions of cake layers at the early and late stages exhibited considerable differences accompanied by the variation in microbial community with the evolution of biofouling. Therefore, this work demonstrates the effectiveness of pre-ozonation in biofouling in long-term operation and provides mechanistic insights into the evolution of biofouling on ceramic membrane.

Au(III)-induced extracellular electron transfer by Burkholderia contaminans ZCC for the bio-recovery of gold nanoparticles

The biorecovery of gold (Au) by microbial reduction has received increasing attention, however, the biomolecules involved and the mechanisms by which they operate to produce Au nanoparticles have been not resolved. Here we report that Burkholderia contaminans ZCC is capable of reduction of Au(III) to Au nanoparticles on the cell surface. Exposure of B. contaminans ZCC to Au(III) led to significant changes in the functional group of cell proteins, with approximately 11.1% of the (C-C/C-H) bonds being converted to CO (8.1%) and C-OH (3.0%) bonds and 29.4% of the CO bonds being converted to (C-OH/C-O-C/P-O-C) bonds, respectively. In response to Au(III), B. contaminans ZCC also displayed the ability of extracellular electron transfer (EET) via membrane proteins and could produce reduced riboflavin as verified by electrochemical and liquid chromatography-mass spectrometric results, but did not do so without Au(III) being present. Addition of exogenous reduced riboflavin to the medium suggested that B. contaminans ZCC could utilize indirect EET via riboflavin to enhance the rate of reduction of Au(III). Transcriptional analysis of the riboflavin genes (ribBDEFH) supported the view of the importance of riboflavin in the reduction of Au(III) and its importance in the biorecovery of gold.

Size-dependent visible-light-enhanced Cr(VI) bioreduction by hematite nanoparticles

Light irradiation would affect the electron transfer between dissimilatory metal-reducing bacteria (DMRB) and semiconducting minerals, which may impose a great influence on the biogeochemistry cycle of heavy metals. However, the size effect of semiconducting minerals on the its electron transfer with DMRB and microbial Cr(VI) reduction under visible light irradiation is little known. Herein, the Cr(VI) reduction by Shewanella oneidensis MR-1 (MR-1) was investigated in the presence of hematite nanoparticles with average diameters of 10 nm and 50 nm in dark and under visible light irradiation. It is found that hematite nanoparticles adhered onto MR-1 cells to form the composites, leading to the decrease in surface sites and Zeta potential. Hematite mediated-Cr(VI) bioreduction rate under visible light irradiation was 0.342 h^-1, which is 3.4 folds enhancement compared with that in dark and 4.4 folds compared with the MR-1 alone under visible light irradiation. Decreasing nanoparticle size of hematite from 50 nm to 10 nm promoted the Cr(VI) reduction under visible light irradiation but impeded it in dark. It was deduced that the bioelectrons from MR-1 could promote the separation of photoelectron-hole pairs of light-irradiated hematite, which consequently enhanced the Cr(VI) bioreduction by MR-1-hematite composites. Moreover, mutant strains experiments demonstrated the vital role of c-cytochrome for the conducting network actively established by MR-1 with hematite nanoparticles. Those findings expand the understanding of the electron transfer pathway for enhancing Cr(VI) reduction by hematite-MR-1 composites, and the impact of particle size on the interaction between semiconducting mineral and electroactive bacteria under light irradiation.

Mineral characterization and composition of Fe-rich flocs from wetlands of Iceland: Implications for Fe, C and trace element export

In freshwater wetlands, redox interfaces characterized by circumneutral pH, steep gradients in O₂, and a continual supply of Fe(II) form ecological niches favorable to microaerophilic iron(II) oxidizing bacteria (FeOB) and the formation of flocs; associations of (a)biotic mineral phases, microorganisms, and (microbially-derived) organic matter. On the volcanic island of Iceland, wetlands are replenished with Fe-rich surface-, ground- and springwater. Combined with extensive drainage of lowland wetlands, which forms artificial redox gradients, accumulations of bright orange (a)biotically-derived Fe-rich flocs are common features of Icelandic wetlands. These loosely consolidated flocs are easily mobilized, and, considering the proximity of Iceland's lowland wetlands to the coast, are likely to contribute to the suspended sediment load transported to coastal waters. To date, however, little is known regarding (Fe) mineral and elemental composition of the flocs. In this study, flocs from wetlands (n = 16) across Iceland were analyzed using X-ray diffraction and spectroscopic techniques (X-ray absorption and ⁵⁷Fe Mössbauer) combined with chemical extractions and (electron) microscopy to comprehensively characterize floc mineral, elemental, and structural composition. All flocs were rich in Fe (229-414 mg/g), and floc Fe minerals comprised primarily ferrihydrite and nano-crystalline lepidocrocite, with a single floc sample containing nano-crystalline goethite. Floc mineralogy also included Fe in clay minerals and appreciable poorly-crystalline aluminosilicates, most likely allophane and/or imogolite. Microscopy images revealed that floc (bio)organics largely comprised mineral encrusted microbially-derived components (i.e. sheaths, stalks, and EPS) indicative of common FeOB Leptothrix spp. and Gallionella spp. Trace element contents in the flocs were in the low μg/g range, however nearly all trace elements were extracted with hydroxylamine hydrochloride. This finding suggests that the (a)biotic reductive dissolution of floc Fe minerals, plausibly driven by exposure to the varied geochemical conditions of coastal waters following floc mobilization, could lead to the release of associated trace elements. Thus, the flocs should be considered vectors for transport of Fe, organic carbon, and trace elements from Icelandic wetlands to coastal waters.

Adsorption of copper, and zinc onto novel Ca-alginate-biochar composite prepared by biochars produced from pyrolysis of groundnut husk

Alginate-based composites have been studied for adsorption technology as adsorbents due to their biocompatible, non-toxic, and cost-effective properties. In this work, groundnut husk biochar (GHB), calcium alginate (CA), and groundnut husk biochar/calcium alginate novel composites (%10) (CA-GHB1) and (% 20) (CA-GHB2) are synthesized and characterized using BET, SEM, EDX, FTIR, TGA. Adsorption performance is compared among GHB, CA, CA-GHB1, and CA-GHB2 composites to remove Cu(II), Zn (II) from aqueous solutions. Factors affecting adsorption, as well as kinetics, equilibrium, and thermal properties of adsorption, were studied using conventional equations. Adsorption isotherm models were used for two and three-parameter isotherm models to understand the interaction between the adsorbent and the adsorbate. 24.3, 44.6, 45.6, and 40.73 mg g^-1 for removal of Cu(II) on GHB, CA, CA-GHB1, and CA-GHB2 and 32.16, 25.07, 36.09, and 40.55 mg g^-1 for removal of Zn(II) on GHB, CA, CA-GHB1, and CA-GHB2 found maximum adsorption capacity (Qm) calculated from Langmuir isotherm. According to D-R isotherm data, the adsorption process is classified as physical adsorption. Thermodynamically, the adsorption process is non-spontaneous and endothermic.

Influence of surface coatings on the adhesion of Shewanella oneidensis MR-1 to hematite

The adhesion of dissimilatory iron reducing bacteria (DIRB) to iron oxides is an important process to initiate direct extracellular electron transfer. Iron oxides in natural environments are often coated by organic matter or silica (SiO₂) which alters their surface physicochemical properties. To investigate the influence of these surface coatings, we characterized the dynamic adhesion processes of Shewanella oneidensis MR-1 to bare hematite, humic acid-coated hematite (hematite-HA), and SiO₂-coated hematite (hematite-SiO₂) using Quartz Crystal Microbalance with Dissipation (QCM-D). The molecular-level process and mechanism were investigated using in situ Attenuated Total Reflectance - Fourier Transform Infrared (ATR-FTIR) spectrometry. We found that MR-1 formed a rigid bacterial layer on bare hematite. Coating with HA or SiO₂ decreased the surface cell density during the initial adhesion stage, and compromised the stability of the subsequent bacterial attachment. The FTIR combined with two-dimensional correlation spectroscopy (2D-COS) analysis showed that C-moieties of polysaccharides dominated interactions in initial adhesion on HA and SiO₂-coated hematite. In the longer term, the HA coating hindered the adsorption of amide, but promoted the binding of polysaccharide C-moieties to hematite. We concluded that, in general, both the HA and SiO₂ coatings reduced the attachment of MR-1 on hematite. These results advance our understanding of the roles of surface coatings on microbe-mineral interactions, which has significant implications for a series of biogeochemical processes in nature.

Dielectric constants of organic pollutants determine their strength for enhancing microbial iron reduction

Physicochemical properties are essential characteristics of organic compounds, which not only impact the fate of organic pollutants but also determine their application in biological processes. Here, we first found that the dielectric constants (ɛ) of organic pollutants negatively correlated to their strength for enhancing microbial Fe(III) reduction. Those with lower ɛ values than 2.61 potentially promoted the above process following the sequence carbon tetrachloride (CT) > benzene > toluene > tetrachloroethylene (PCE) due to their different ability to deprotonate the phosphorus-related groups on the outer cell membrane of iron-reducing bacteria Shewanella oneidensis MR-1 (MR-1). The stronger deprotonation of phosphorus-related groups induced more negative charge of cell surface and more strongly increased cell membrane permeability and consequently stimulated faster release of flavin mononucleotide (FMN) as an electron shuttle/cofactor for Fe(III) reduction. These findings are significant for understanding the biogeochemistry in multi-organic contaminated subsurface and providing knowledge for remediation strategies and current production.

Inhibition of phosphate sorptions on four soil colloids by two bacteria

Ion sorption on soil and sediment has been reported to be potentially affected by bacteria which may interact both physically and chemically with solid surfaces. However, whether and how bacteria affect the sorption of inorganic phosphate (P) on soil colloids remains poorly known. Here, we comparably investigated the P sorption on four soil colloids (three highly weathered soils including two Oxisols and one Ultisol and one weakly weathered soil Alfisol) and their complexes with Bacillus subtilis and Pseudomonas fluorescens. Batch experiments showed a notable reduction in P sorption on the colloids of highly weathered soils by the two bacteria at varying P concentrations and pHs; whereas that on the colloids of Alfisol appeared to be unaffected by the bacteria. The inhibitory effect was confirmed by both greater decline in P sorption at higher bacteria dosages and the ability of the bacteria to desorb P pre-adsorbed on the colloids. Further evidence was given by isothermal titration calorimetric experiments which revealed an alteration in enthalpy change caused by the bacteria for P sorption on Oxisol but not for that on Alfisol. The B. subtilis was more efficient in suppressing P sorption than the P. fluorescens, indicating a dependence of the inhibition on bacterium type. After association with bacteria, zeta potentials of the soil colloids decreased considerably. The decrease positively correlated with the decline in P sorption, regardless of soil and bacterium types, demonstrating that the increment in negative charges of soil colloids by bacteria probably contributed to the inhibition. In addition, scanning electron microscopic observation and the Derjaguin-Landau-Verwey-Overbeek theory prediction suggested appreciable physical and chemical interactions between the bacteria and the highly weathered soil colloids, which might be another contributor to the inhibition. These findings expand our understandings on how bacteria mobilize legacy P in soils and sediments.

The key to maximizing the benefits of antimicrobial and self-cleaning coatings is to fully determine their risks

Antimicrobial and self-cleaning nanomaterial coatings have attracted significant research attention in recent years due to the growing global threat of infectious diseases, the emergence of new diseases such as COVID-19, and increases in healthcare-associated infections. Although there are many reportedly successful coating technologies, the evaluation of antimicrobial performance is primarily conducted under simple laboratory conditions without adequate testing under real environmental conditions that reflect practical use and more importantly, reveal unintended outcomes. Furthermore, there is no standardized evaluation methodology to assess the long-term stability or the consequences associated with coating deterioration, such as the ecological impacts of nanomaterials or the proliferation of antibiotic-resistant bacteria/genes. In this review, we propose a precautionary framework that integrates a rigorous assessment of potential risks and limitations of nanomaterial coatings for antimicrobial applications as intrinsic to a comprehensive evaluation of their benefits. In addition, we summarize some emerging coating technologies as promising strategies to minimize unintended risks and enhance performance.

Understanding the role of cations and hydrogen bonds on the stability of aerobic granules from the perspective of the aggregation and adhesion behavior of extracellular polymeric substances

Extracellular polymeric substances (EPS) were essential for the granulation and stability of aerobic granular sludge (AGS). In this study, the effects of electrostatic interactions, bridging effect of divalent cations, and hydrogen bonds on the EPS-EPS and EPS-surface interaction were verified by enhancing or reducing the specific interaction with the addition of cations or urea. The size and the surface properties of EPS aggregates were investigated, the adhesion behavior and viscoelasticity of EPS were analyzed by quartz crystal microbalance with dissipation monitoring. The changes of EPS in response to the various condition were analyzed by infrared spectroscopy and fluorescence spectrum. The electrostatic repulsion between EPS could be significantly reduced by Ca²⁺ addition. With the bridging effect, 10 μM of Ca²⁺ could reduce the negative charge of EPS more effectively than 200 μM of Na⁺. As Ca²⁺ could form the complex with the protein and Ca²⁺ was more inclined to bind with COO^-, the Ca²⁺ took advantage of boosting the EPS-EPS and EPS-surface interaction than Mg²⁺ at the same ionic strength, which resulted in the denser structure of calcium-treated EPS. The destruction of hydrogen bonds by urea addition reduced the EPS-EPS and EPS-surface interaction, which confirmed the potential existence of hydrogen bonds in the interaction of EPS-EPS and EPS-surface. The removal of hydrogen bonds of EPS destroyed the protein's secondary structure and caused the unfolded state of the protein, which led to the looser structure of the EPS layer.

Understanding the dependence of start-up and stability of aerobic granule on pH from the perspective of adhesion behavior and properties of extracellular polymeric substances

The start-up and stability of aerobic granular sludge (AGS) could be greatly influenced by pH variation. The inner core in the aerobic granules provided adhesion sites for microbes by extracellular polymeric substances (EPS) adhesion, the adhesion behavior of EPS and the properties of adhesion layer formed by EPS with pH changes might directly affect the start-up efficiency and stability of AGS. In this study, the adhesion behavior of EPS at an inorganic surface and the viscoelasticity of the EPS adhesion layer with pH variation was investigated by quartz crystal microbalance with dissipation monitoring, and the response of functional groups and intermolecular interactions to pH changes was explored. Based on the interaction energy calculation, it was found that the charge repulsion between substances dominated the interactions between EPS components and between EPS and the surface by regulating protonation and deprotonation of the functional groups of EPS with pH variation. A lower energy barrier between EPS and the surface at a lower pH value could facilitate the adhesion of EPS at the surface, which favored the rapid start-up of AGS. Moreover, the high ratio of both α-helix and intermolecular hydrogen bond at an acid condition could enhance the gel-strength of EPS, which provide AGS the resistance ability against external disturbance. This study revealed the mechanism of the interactions in EPS adhesion process with the variation of pH and provided useful information for a better understanding of the stability of the AGS.

Zinc biosorption by Dunaliella sp. AL-1: Mechanism and effects on cell metabolism

Phycoremediation is being considered as an eco-friendly and safe technology for toxics eradication from contaminated aquatic systems. The zinc biosorption capacity of Dunaliella sp. AL-1 was demonstrated. Zinc impacted cell growth and photosynthetic pigments accumulation showing exposure time and concentration-dependent effects. The investigation of the antioxidant protective response to zinc exposition proved a stimulation of guaiacol peroxidase (GPX) activity and an increased rate of total phenolics, flavonoids, condensed tannins and glutathione (GSH). The Box-Behnken design was used to optimize zinc removal conditions by Dunaliella sp. AL-1 strain. The maximum experimental zinc uptake was obtained when zinc concentration, algae dose, initial pH, and contact time were set at 25 mg/L, 0.5 g/L, 7.59 and 13 h 43 min, respectively. Under completely optimized conditions, the fraction of zinc removed intracellularly was much lower than the adsorbed on the cell surface. FTIR analysis Dunaliella sp. AL-1 biomass demonstrated that several functional groups as OH, CH₂, CO, PO, COO and CO may participate in the biosorption process. A comparative proteomic analysis through nano-HPLC coupled to LC-MS/MS, was performed from pre- and post-zinc treatments cells. Among 199 identified proteins, 60 were differentially expressed of which 41 proteins were down-regulated against 19 up-regulated ones. Target proteins have been demonstrated to be implicated in different metabolic processes mainly photosynthesis and antioxidant defenses.

Recent development in antimicrobial activity of biopolymer-inorganic nanoparticle composites with water disinfection potential: a comprehensive review

Nowadays, water-borne diseases including hepatitis remain the critical health challenge due to the inadequate supply of potable and safe water for human activities. The major cause is that the pathogenic microorganisms causing diseases have developed resistance against common techniques used by sewage water treatment plants for water disinfection. Therefore, there is a need to improve these conventional water treatment techniques by taking into consideration the application of nanotechnology for wastewater purification. The main aim of this paper is to provide a review on the synthesis of biopolymer-inorganic nanoparticle composites (BINCs), their used as antimicrobial compounds for water disinfection, as well as to elaborate on their antimicrobial mechanism of action. The microbial properties affecting the activity of antimicrobial compounds are also evaluated.

Role of Environmental Variables in the Transport of Microbes in Stormwater

Microbial pathogens present in stormwater, which originate from human sewage and animal faecal matters, are one of the major impediments in stormwater reuse. The transport of microbes in stormwater is more than just a physical process. The mobility of microbes in stormwater is governed by many factors, such as dissolved organic matter, cations, pH, temperature and water flow. This paper examined the roles of three environmental variables, namely: dissolved organic matter, positive cations and stormwater flow on the transport of two faecal indicator bacteria (FIB), Enterococcus spp. and Escherichia coli. Stormwater runoff samples were collected during twelve wet weather events and one dry weather event from a medium density residential urban catchment in Brisbane. Enterococcus spp. numbers as high as 3 × 104 cfu/100 mL were detected in the stormwater runoff, while Escherichia coli numbers up to 3.6 × 103 cfu/100 mL were observed. The dissolved organic carbon (DOC) in the stormwater samples was in the range of 2.2–5.9 mg/L with an average concentration of 4.5 mg/L in which the hydrophilic carbon constituted the highest mass fraction of 60–80%. The results also showed that the transport of FIB in stormwater was reduced with an increasing concentration of the hydrophilic organic fraction, especially the humic fraction. On the contrary, the concentration of trivalent cations and stormwater flow rate showed a positive correlation with the FIB numbers. These findings indicated the potentiality to make a good use and measurement of simple environmental variables to reflect the degree of microbe transport in stormwater from residential/suburban catchments.

Sorption fractionation of bacterial extracellular polymeric substances (EPS) on mineral surfaces and associated effects on phenanthrene sorption to EPS-mineral complexes

Microbial extracellular polymeric substances (EPS) represent an important source of labile component in natural organic matter (NOM) pool. However, the sorption behavior of EPS to mineral surfaces and associated effects on sorption of hydrophobic organic contaminants (HOCs) are not well understood. Here, we systematically investigated the fractionation of EPS extracted from two different microbial sources (Gram-positive B. subtilis and Gram-negative E. coli) during sorption to montmorillonite, kaolinite, and goethite using collective characterization methods (SEM, electrophoretic mobility, FTIR, ¹H NMR, UV-vis, fluorescence, and size exclusion chromatography). The peptide-like substances and acidic components with high aromaticity in B. subtilis EPS were more preferentially sorbed than those fractions in E. coli EPS by the three minerals, especially by goethite. Additionally, goethite sorbed more negatively charged and lower molecular weight fractions compared to montmorillonite. The presorption of EPS (1.68-3.79% organic carbon) on the three minerals increased the sorption distribution coefficient (K_d) of phenanthrene (a model apolar HOC) by 2.83-5.29 times, depending on the EPS-mineral complex. All the six examined EPS-mineral complexes exhibited approximately one order of magnitude larger organic carbon (OC)-normalized sorption coefficient (K_OC) than the two pristine EPS, indicating that the sorptive interactions were pronouncedly facilitated by the sorbed EPS on mineral surfaces. Thus, the type and surface property of minerals as well as the biological source of EPS are key determinants of sorption fractionation of EPS on minerals and in turn affect sorption affinity of apolar HOCs to EPS-mineral complexes.

Outer Membrane c-Type Cytochromes OmcA and MtrC Play Distinct Roles in Enhancing the Attachment of Shewanella oneidensis MR-1 Cells to Goethite

The outer membrane c-type cytochromes (c-Cyts) OmcA and MtrC in Shewanella are key terminal reductases that bind and transfer electrons directly to iron (hydr)oxides. Although the amounts of OmcA and MtrC at the cell surface and their molecular structures are largely comparable, MtrC is known to play a more important role in dissimilatory iron reduction. To explore the roles of these outer membrane c-Cyts in the interaction of Shewanella oneidensis MR-1 with iron oxides, the processes of attachment of S. oneidensis MR-1 wild type and c-type cytochrome-deficient mutants (the ΔomcA, ΔmtrC, and ΔomcA ΔmtrC mutants) to goethite are compared via quartz crystal microbalance with dissipation monitoring (QCM-D). Strains with OmcA exhibit a rapid initial attachment. The quantitative model for QCM-D responses reveals that MtrC enhances the contact area and contact elasticity of cells with goethite by more than one and two times, respectively. In situ attenuated total reflectance Fourier transform infrared two-dimensional correlation spectroscopic (ATR-FTIR 2D-CoS) analysis shows that MtrC promotes the initial interfacial reaction via an inner-sphere coordination. Atomic force microscopy (AFM) analysis demonstrates that OmcA enhances the attractive force between cells and goethite by about 60%. As a result, OmcA contributes to a higher attractive force with goethite and induces a rapid short-term attachment, while MtrC is more important in the longer-term interaction through an enhanced contact area, which promotes interfacial reactions. These results reveal that c-Cyts OmcA and MtrC adopt different mechanisms for enhancing the attachment of S. oneidensis MR-1 cells to goethite. It improves our understanding of the function of outer membrane c-Cyts and the influence of cell surface macromolecules in cell-mineral interactions.IMPORTANCE Shewanella species are one group of versatile and widespread dissimilatory iron-reducing bacteria, which are capable of respiring insoluble iron minerals via six multiheme c-type cytochromes. Outer membrane c-type cytochromes (c-Cyts) OmcA and MtrC are the terminal reductases in this pathway and have comparable protein structures. In this study, we elucidate the different roles of OmcA and MtrC in the interaction of S. oneidensis MR-1 with goethite at the whole-cell level. OmcA confers enhanced affinity toward goethite and results in rapid attachment. Meanwhile, MtrC significantly increases the contact area of bacterial cells with goethite and promotes the interfacial reaction, which may explain its central role in extracellular electron transfer. This study provides novel insights into the role of bacterial surface macromolecules in the interfacial interaction of bacteria with minerals, which is critical to the development of a comprehensive understanding of cell-mineral interactions.

Spectroscopic characterization and antimicrobial activity of nanoparticle doped cyclodextrin polyurethane bionanosponge

This study reports on the spectroscopic characterization and antimicrobial potency of polyurethane cyclodextrin co-polymerized phosphorylated multiwalled carbon nanotube-doped Ag-TiO₂ nanoparticle (pMWCNT-CD/Ag-TiO₂) bionanosponge nanocomposite. The synthesis of pMWCNT-CD/Ag-TiO₂ bionanosponge nanocomposite was carried out through the combined processes of amidation and polymerization reactions as well as the sol-gel method. The native nanosponge cyclodextrin and phosphorylated multiwalled carbon nanotube-nanosponge CD (pMWCNT-CD) polyurethanes were also prepared, and their antimicrobial activities carried out for comparison purposes. The synthesized bionanosponge polyurethane materials were characterized using Fourier-transform infrared (FTIR) spectroscopy, Laser Raman spectroscopy, X-ray diffraction (XRD), and X-ray photoelectron spectroscopy (XPS) to give clear information regarding their structural, and dynamic physicochemical properties. The potency tests of the synthesized compounds were carried out against three bacterial strains Escherichia coli, Bacillus subtilis, Staphylococcus aureus, and two fungal representatives Aspergillus ochraceus and Aspergillus fumigatus, using the disc diffusion method. Micro dilution and agar plating were used to determine the minimum bactericidal concentration (MBC) and minimum fungicidal concentration (MFC), respectively. The results obtained revealed that pMWCNT-CD/Ag-TiO₂ exhibits superior antibacterial and antifungal activities when compared to the other bionanosponge polymers tested. Thus, the bionanosponge polyurethane pMWCNT-CD/Ag-TiO₂ nanocomposite can be considered as an active antimicrobial compound (AMC).

The mechanism for inhibiting acidification of variable charge soils by adhered Pseudomonas fluorescens

Acidification in variable charge soils is on the rise due to increased acid deposition and use of nitrogenous fertilizers. The associated low pH and cation exchange capacity make the soils prone to depleted base cations and increased levels of Al³⁺. Consequently, Al toxicity to plants and soil infertility decrease crop yield. This study was designed to investigate the effect of Pseudomonas fluorescens on the acidification of two Ultisols. The simulated acidification experiment demonstrated that the pH of bacteria-treated soil was higher than that of control under similar conditions, suggesting that the adhered bacteria inhibited soil acidification. This observation was attributed to the association of organic anions (RCOO^- or RO^-) on bacteria with H⁺ to form neutral molecules (RCOOH or ROH) and reducing the activity of H⁺ in solution. The bacteria also inhibited the increase in soil soluble Al and exchangeable Al during soil acidification. The adhesion of bacteria on the soils increased soil effective cation exchange capacity (ECEC) and exchangeable base cations at each pH compared to control. The release of exchangeable base cations from bacteria-treated soil, and the decrease in soil ECEC and exchangeable base cations with decreasing pH confirmed that protonation of organic anions on adhered bacteria was mainly responsible for the inhibition of soil acidification. The change of zeta potential of the bacteria with pH and the ART-FTIR analysis at various pH provided more evidence for this mechanism. Therefore, the bacteria in variable charge soils played an important role in retarding soil acidification.

Iron mineral-humic acid complex enhanced Cr(VI) reduction by Shewanella oneidensis MR-1

Microorganisms, iron minerals, and humic acid are widely common in the soil and water environment and closely interact within environmental processes. In this study, the Cr(VI) removal by Shewanella oneidensis MR-1 (S. oneidensis) was examined in the presence of goethite and humic acid (HA) to mimic the real environment situation. Scanning electron microscopy (SEM) combined with energy disperse spectroscopy (EDS), X-ray photoelectron spectroscopy (XPS), and electron paramagnetic resonance (EPR) technologies were used to probe the Cr(VI) reduction mechanism. Our results showed that S. oneidensis alone could reduce 65% of 1.0 mM Cr(VI) after 8 h of the reduction process. Meanwhile, Cr(VI) reduction rate was declined to 56% in the presence of goethite or humic acid. Contrary, the Cr(VI) reduction rate was mightily increased to 79% by the ternary complex of S. oneidensis-goethite-HA where reduced humic acid (HA_red) acted as electron shuttles and diminished the bacterial adhesion to the goethite surface thereby enhanced electron transfer and increased the extent of Cr(VI) reduction by 1.3 fold. XPS analysis indicated that Cr(VI) was reduced to Cr(III), and the final yields were Cr(OH)₃ and Cr₂O₃ precipitated on the surface of bacterial cells. S. oneidensis could also reduce Fe(III) in goethite to Fe(II), which in turn reduced Cr(VI). These results suggested that iron mineral-humic acid complex could enhance the microbial reduction of Cr(VI) and revealed the promotion role of HA in the Cr(VI) bioreduction process. This study affords inclusive insights on the Cr(VI) reduction kinetics and mechanisms in the most complicated systems.

Transformation of siderite to goethite by humic acid in the natural environment

Humic acid (HA) is particularly important in iron-bearing mineral transformations and erosion at the water-mineral boundary zone of the Earth. In this study, three stages of the possible pathway by which HA causes mineral transformation from siderite to goethite are identified. Firstly, a Fe(II)-HA complex is formed by chelation, which accelerates the dissolution and oxidation of Fe(II) from the surface of siderite. As the Fe(II)-HA complex retains Fe atoms in close proximity of each other, ferrihydrite is formed by the agglomeration and crystallization. Finally, the ferrihydrite structurally rearranges upon attachment to the surface of goethite crystals and merges with its structure. The influence of low concentrations of HA (0-2 mg/L) on phosphate adsorption is found to be beneficial by the inducing of new mineral phases. We believe that these results provide a greater understanding of the impact of HA in the biogeochemical cycle of phosphate, mineral transformation.

Structure, Defects, and Magnetism of Electrospun Hematite Nanofibers Silica-Coated by Atomic Layer Deposition

In the last years, hematite has been utilized in a plethora of applications. High aspect-ratio nanohematite and hematite/silica core-shell nanostructures are arousing growing interest for applications exploiting their magnetic properties. Atomic layer deposition (ALD) is utilized here to produce SiO₂-coated α-Fe₂O₃ nanofibers (NFs) through two synthetic routes, viz. electrospinning/calcination/ALD or electrospinning/ALD/calcination. The number of ALD cycles (10-100) modulates the coating thickness, while the chosen route controls the final nanostructure. Porous and partially hollow NFs are produced. Their hierarchical structure and the nature and density of the lattice defects and strain are characterized by combining electron microscopy, diffraction, and spectroscopy techniques. The uncoated hematite NFs mostly have surface-related strain, which is attributed to oxygen vacancies/Fe²⁺ sites. ALD coating causes microstrain release and decrease of surface states. NFs calcined after ALD have extensive bulk strain, which is ascribed to the presence of dislocations throughout the volume of the NF grains. Bulk strain determines the remanent magnetization, whereas both surface and bulk strain influence the coercive field and the thermal behavior across the Morin temperature, including the magnetic memory effect. To the best of the authors' knowledge, the correlation between lattice defects/strain and magnetic properties of SiO₂-coated α-Fe₂O₃ NFs has never been reported before.

Efficient U(VI) adsorption on iron/carbon composites derived from the coupling of cellulose with iron oxides: Performance and mechanism

Novel iron/carbon composites were successfully prepared via coupling of cellulose with iron oxides (e.g. α-FeOOH, Fe₂O₃ and Fe(NO₃)₃·9H₂O) at different temperatures under nitrogen atmosphere. Characterization by various techniques implied that chemical interaction between cellulose and Fe₃O₄/Fe⁰ existed in the as-prepared iron/carbon composites. The site of interaction between cellulose and iron precursors was illustrated (mainly combined with COO-). The self-reduction of Fe³⁺ to Fe²⁺ or even Fe⁰ and the interaction between carbon and Fe₃O₄/Fe⁰ in the calcination process realized the strong magnetism of the composites. Batch experiments and spectroscopic techniques indicated that the maximum adsorption capacity of MHC-7 for U(VI) (105.3 mg/g) was significantly higher than that of MGC-7 (86.0 mg/g) and MFC-7 (79.0 mg/g), indicating that Fe₂O₃ can be regarded as the remarkable iron resource for the iron/carbon composites. XPS results revealed that the oxygen-containing groups were responsible for the adsorption process of U(VI) on iron/carbon composites, and the adsorption of carbon and reduction of Fe⁰/Fe₃O₄ toward U(VI) were synergistic during the reaction process. In addition, the iron/carbon composites exhibited a good recyclability, recoverability and stability for U(VI) adsorption in the regeneration experiments. These findings demonstrated that the iron/carbon composites can be considered as valuable adsorbents in environmental cleanup and the Fe₂O₃ was a promising iron resource for the preparation of iron/carbon composites.

Effects of Flavin-Goethite Interaction on Goethite Reduction by Shewanella decolorationis S12

Flavin mononucleotide (FMN) and riboflavin are structurally similar flavins, except for the presence of a phosphate group on the FMN molecule. They are used by a variety of electroactive bacteria as extracellular electron shuttles in microbial Fe reduction and inevitably interact with Fe (hydr)oxides in the extracellular environment. It is currently unknown whether flavin/Fe (hydr)oxide interaction interferes with extracellular electron transfer (EET) to the mineral surface. In this study, we found that the goethite reduction rate was lower when mediated by FMN than by RF, suggesting that FMN was less effective in shuttling electrons between cells and minerals. Nevertheless, the phosphate group did not prevent the FMN molecule from accepting electrons from bacterial cells and transferring electrons to the mineral. Results of adsorption experiment, attenuated total reflectance (ATR) Fourier transform infrared (FTIR) spectroscopy, and bacterial attachment trend analyses showed that FMN exhibited strong adsorption on goethite surface by forming phosphate inner-sphere complex, which prevented bacterial cells from approaching goethite. Therefore, the interaction between FMN and goethite surface may increase the distance of electron transfer from bacterial cells to goethite and result in lower EET efficiency in comparison to those mediated by riboflavin. To our knowledge, these data reveal for the first time that the interaction between flavin and Fe (hydr)oxide affect flavin-mediated electron transfer to mineral surface and add a new dimension to our understanding of flavin-mediated microbial Fe reduction processes.

Size-Dependent Bacterial Toxicity of Hematite Particles

Submicron-sized iron oxide particles can influence the activity of bacteria, but the exact mechanisms of oxide toxicity toward bacteria remain elusive. By using atomic force microscopy (AFM), soft X-ray tomography (Nano-CT), and Fourier transform infrared (FTIR) spectrometry, we show how the size-dependent interfacial interactions between hematite particles and bacteria in the absence of any ligands contribute to the antimicrobial properties against Gram-positive and Gram-negative bacterial strains. We found that surface adhesion between hematite particles and bacterial cells is initially dominated by Lifshitz van der Waals and electrostatic forces. Subsequently, the rapid formation of P-O-Fe bonds occurs, followed by changes in the structures of membrane proteins in 2 h, resulting in the loss of the structural integrity of the membrane within 10 h. Thus, particles can migrate into the cells. After contact with bacterial cells, reactive oxygen species are generated on the surface of hematite particles, leading to cell permeabilization. G^- bacteria appear to be more susceptible to this process than G⁺ bacteria because the latter exhibit weaker adhesion forces toward hematite and benefit from the protective effects of the peptidoglycan layers. Our work revealed that hematite nanoparticles are more toxic to bacteria than microscaled particles due to their strong interfacial physicochemical interactions with the cells.

Goethite Hinders Azo Dye Bioreduction by Blocking Terminal Reductive Sites on the Outer Membrane of Shewanella decolorationis S12

Iron (hydr)oxides are the most ubiquitous Fe(III)-containing minerals in the near-surface environments and can regulate organic pollutant biotransformation by participating in bacterial extracellular electron transfer under anaerobic conditions. Mechanisms described so far are based on their redox properties in bacterial extracellular respiration. Here, we find that goethite, a typical iron (hydr)oxide, inhibits the bioreduction of different polar azo dyes by Shewanella decolorationis S12 not through electron competition, but by the contact of its surface Fe(III) with the bacterial outer surface. Through the combined results of attenuated total reflectance (ATR) Fourier transform infrared spectroscopy, two-dimensional correlation spectroscopy, and confocal laser scanning microscope, we found that the outer membrane proteins MtrC and OmcA of strain S12 are key binding sites for goethite surface. Meanwhile, they were identified as the important reductive terminals for azo dyes. These results suggest that goethite may block the terminal reductive sites of azo dyes on the bacterial outer membrane to inhibit their bioreduction. This discovered role of goethite in bioreduction provides new insight into the microbial transformation processes of organic pollutants in iron (hydr)oxide-containing environments.

Geometrical Changes in the Hemes of Bacterial Surface c-Type Cytochromes Reveal Flexibility in Their Binding Affinity with Minerals

Microbial extracellular electron transport occurs via the physical and electrical association of outer-membrane c-type cytochromes (OM c-Cyts) with extracellular solid surfaces. However, studies investigating the characteristics of cytochrome binding with solid materials have been limited to the use of purified units of OM c-Cyts dissolved in solution, rather than OM c-Cyts in intact cells, because of the lack of a methodology that specifically allows for the monitoring of OM c-Cyts in whole-cells. Here, we utilized circular dichroism (CD) spectroscopy to examine the molecular mechanisms and binding characteristics of the interaction between MtrC, a unit of OM c-Cyts, in whole Shewanella oneidensis MR-1 cells and hematite nanoparticles. The addition of hematite nanoparticles significantly decreased the intensity of the Soret CD peaks, indicating geometrical changes in the hemes in MtrC associated with their physical contact with hematite. The binding affinity of MtrC estimated using CD spectra changed predominantly depending upon the redox state of MtrC and the concentration of the hematite nanoparticles. In contrast, purified MtrC demonstrated a constant binding affinity following a Langmuir isotherm, with a standard Gibbs free energy of -43 kJ mol^-1, suggesting that the flexibility in the binding affinity of MtrC with hematite was specific in membrane-bound protein complex conditions. Overall, these findings suggest that the binding affinity as well as the heme geometry of OM c-Cyts are flexibly modulated in the membrane complex associated with microbe-mineral interactions.

Characterizing Preferential Adsorption of Phosphate on Binary Sorbents of Goethite and Maghaemite using in situ ATR-FTIR and 2D Correlation Spectroscopy

Recent developments in analytics using infrared spectroscopy have enabled us to identify the adsorption mechanism at interfaces, but such methods are applicable only for simple systems. In this study, the preferential adsorption of phosphate on binary goethite and maghaemite was investigated. As a result, monodentate and bidentate complexes were the major complexes on goethite and maghaemite, respectively. A shrinking effect in goethite and a swelling effect in maghaemite were identified, and environmental perturbations caused a significant decrease in the integrated absorbance of phosphate complexes on maghaemite, while no effect was observed on goethite, which implies that different adsorption mechanisms were involved. Based on the results, a bridging complex was proposed, and the swelling effect is explained by the negatively charged maghaemite surface resulting from the bidentate complex. The isolation of phosphate by the shrinking effect explains the low phosphate bioavailability in the soil environment, while the colloidal properties of the bidentate complex on maghaemite are the reason for colloidal mobilization. To the best of our knowledge, this study not only addresses the shrinking and swelling properties of iron (hydr)oxide nanoparticles but also demonstrates preferential adsorption on binary sorbents using in situ ATR-FTIR for the first time.

Effects of Interfaces of Goethite and Humic Acid-Goethite Complex on Microbial Degradation of Methyl Parathion

Microbial degradation plays an essential role in the removal of hydrophobic organic compounds (HOCs) dispersed in soil and sediment, and its performance is greatly affected by mineral particles which regulate HOCs bioavailability by interfacial adsorption. Likewise, bacteria cells attach to the surfaces of mineral particles as well but how bacterial attachment affects biodegradation is largely unknown. Here we report inhibitory effects of goethite and humic acid (HA)-goethite complex addition on microbial degradation of methyl parathion (MP). Using attenuated total reflectance-Fourier transform infrared spectroscopy, we observed that the adhesion of bacterial cells responsible for MP degradation on goethite occurred and the adhesive strength increased over time. We then replaced goethite with phosphate-adsorbed goethite to weaken the goethite-bacteria association and the inhibition of MP biodegradation was alleviated. These results suggested the formation of goethite-bacteria association hinder MP biodegradation. Meanwhile, our results showed that HA coating prevented bacterial attachment on goethite particles along with a drastically increased MP adsorption by goethite. The combined effect would lead to decreased mass fluxes of MP to bacterial cells and could represent another mechanism responsible for the decreased degradation rate observed in the current study.

Adsorption mechanism of extracellular polymeric substances from two bacteria on Ultisol and Alfisol

The primary objective of this study was to identify the capacity and mechanism of extracellular polymeric substance (EPS) adsorption on soil colloids of Alfisol and Ultisol at different pH and ionic strengths. Two kinds of EPS were extracted from Bacillus subtilis and Pseudomonas fluorescens by centrifugation, and their adsorption on Ultisol and Alfisol was investigated using a batch adsorption experiment and attenuated total reflectance-Fourier transform infrared spectroscopy (ATR-FTIR). The average diameter of EPS from B. subtilis and P. fluorescens was 1825 and 1288 nm, respectively, and both the EPS were negatively charged. The zeta potentials of the two EPS became more negative with increasing solution pH from 3 to 8 and less negative with increasing ionic strength from 0 to 80 mM. The maximum adsorption capacity of EPS-C and EPS-N on Alfisol was higher than that on Ultisol, whereas the maximum adsorption capacity of EPS-P on Alfisol was lower than that on Ultisol. The adsorption of EPS-C, EPS-N, and EPS-P of both the EPS on Ultisol and Alfisol decreased with increasing solution pH from 3 to 8. Adsorption of EPS-C, EPS-N, and EPS-P of both the EPS on Alfisol significantly increased with increasing ionic strength from 0 to 10 mM, whereas it remained constant, slightly increased, or reduced, when the ionic strength was increased from 10 to 80 mM. The adsorption of EPS-C, EPS-N, and EPS-P on Ultisol slightly increased with increasing ionic strength from 0 to 80 mM. Saturation coverage determined by ATR-FTIR showed that adsorption of whole EPS on Ultisol was higher than that on Alfisol at pH 6 after 60 min. Thus, electrostatic force between EPS and soil colloids played an important role in EPS adsorption. Besides, proteins and phosphate groups in EPS also contributed to EPS adsorption on soil colloids.

Preferential adhesion of surface groups of Bacillus subtilis on gibbsite at different ionic strengths and pHs revealed by ATR-FTIR spectroscopy

Adhesion of bacteria onto minerals is a ubiquitous process that plays a central role in many biogeochemical, microbiology and environmental processes in soil and sediment. Although bacterial adhesion onto soil minerals such as phyllosilicates and Fe-oxides have been investigated extensively, little is known about the mechanisms for bacterial attachment onto Al-oxides. Here, we explored the adhesion of Bacillus subtilis onto gibbsite (γ-AlOOH) under various ionic strengths (1, 10, 50, and 100 mM NaCl) and pHs (pH 4, 7, and 9) by in-situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. The time evolution of the peak intensities of the attached bacteria suggested that the adhesion underwent an initial rapid reaction followed by a slow pseudo-first-order kinetic stage. Spectral comparison between the attached and free cells, together with the interaction energy calculated with the Derjaguin, Landau, Verwey, and Overbeek (DLVO) theory and the micro-morphology of bacteria-gibbsite complexes, indicated that both electrostatic and chemical (bacterial groups such as phosphate and carboxyl covalently bind to gibbsite) interactions participated in the adhesion processes. Both solution ionic strength (IS) and pH impacted the spectra of attached bacteria, but the peak intensity of different bands changed differently with these two factors, showing a preferential adhesion of surface groups (phosphate, carboxyl, and amide groups) on gibbsite at different conditions. The diverse responses to IS and pH alteration of the forces (chemical bonds, electrostatic attractions, and the hydrophobic interactions) that essentially govern the adhesion might be responsible for the preferential adhesion. These results may help to better understand how bacteria adhere onto soil oxides at molecular scales.

Preparation, characterization, and dye removal study of activated carbon prepared from palm kernel shell

Palm oil mill wastes (palm kernel shell (PKS)) were used to prepare activated carbons, which were tested in the removal of colorants from water. The adsorbents were prepared by 1-h impregnation of PKS with ZnCl₂ as the activating agent (PKS:ZnCl₂ mass ratios of 1:1 and 2:1), followed by carbonization in autogenous atmosphere at 500 and 550 °C during 1 h. The characterization of the activated carbons included textural properties (porosity), surface chemistry (functional groups), and surface morphology. The dye removal performance of the different activated carbons was investigated by means of the uptake of methylene blue (MB) in solutions with various initial concentrations (25-400 mg/L of MB) at 30 °C, using a 0.05-g carbon/50-mL solution relationship. The sample prepared with 1:1 PKS:ZnCl₂ and carbonized at 550 °C showed the highest MB adsorption capacity (maximum uptake at the equilibrium, q _max = 225.3 mg MB / g adsorbent), resulting from its elevated specific surface area (BET, 1058 m²/g) and microporosity (micropore surface area, 721 m²/g). The kinetic experiments showed that removals over 90% of the equilibrium adsorptions were achieved after 4-h contact time in all the cases. The study showed that palm oil mill waste biomass could be used in the preparation of adsorbents efficient in the removal of colorants in wastewaters.

In vitroantibacterial activity of oxide and non-oxide bioceramics for arthroplastic devices: II. Fourier transform infrared spectroscopy

The metabolic response of Gram-positiveStaphylococcus epidermidisbacteria to bioceramic substrates was probed by Fourier transform infrared spectroscopy.

Adsorption of phosphate from aqueous solution using electrochemically modified biochar calcium-alginate beads: Batch and fixed-bed column performance

Batch and continuous fixed-bed column studies were investigated using electrochemically modified biochar calcium-alginate beads (EMB-CABs) as an adsorbent for the removal of phosphate from aqueous solutions. Batch experiments revealed that the phosphate adsorption behavior of EMB-CABs and its structural characteristics were highly dependent on pH condition. Also, kinetics and equilibrium isotherms studies demonstrated that the experimental data correlated well with the pseudo-second-order and Sips isotherm models, respectively. The effects of different operating parameters such as bed height, initial phosphate concentration, and flow rate were investigated in a continuous fixed-bed column, and the experimental data were fitted to three different breakthrough models, the Adams-Bohart, Thomas, and Yoon-Nelson models. The results suggested that the Yoon-Nelson model showed better agreement with the breakthrough curves than other models. Lastly, the design parameters for a large-scale column were calculated via the scale-up approach using the breakthrough parameters obtained from lab-scale column tests.

Bacterial disinfection in a sunlight/visible-light-driven photocatalytic reactor by recyclable natural magnetic sphalerite

A 5-L reactor was designed and used to enhance the sunlight/visible-light-driven (VLD) photocatalytic disinfection efficiency towards Gram-negative bacterium (Escherichia coli). Natural magnetic sphalerite (NMS) was used as the photocatalyst, which could be easily recycled by applying a magnetic field. Results showed that NMS with irradiation by the blue light emitting diode (LED) lamp could completely inactivate 1.5 × 10⁵ cfu/mL of E. coli within 120 min in the first three runs. However, the inactivation efficiency of E. coli started to decrease in the 4th Run, while in the 5th run, the E. coli with the initial concentration of 5 logs was inactivated to 3.3 (blue-light) and 3.5 logs (sunlight), respectively. Moreover, the stability and deactivation mechanism of NMS during subsequent runs were also studied. The results showed that the decline of the photocatalytic activity was possibly attributed to adsorption of the bacterial decomposed compounds on the active sites. In addition, photocatalytic bactericidal mechanism of the NMS in the photocatalytic system was investigated by using multiple scavengers to remove the specific reactive species. Moreover, various Gram-positive bacteria including Staphylococcus aureus, Microbacterium barkeri, and Bacillus subtilis could also be efficiently inactivated in the photocatalytic system.