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Zhang S, Shen C, Zhang F, Wei K, Shan S, Zhao Y, Man YB, Wong MH, Zhang J. Microplastics removal mechanisms in constructed wetlands and their impacts on nutrient (nitrogen, phosphorus and carbon) removal: A critical review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 918:170654. [PMID: 38331284 DOI: 10.1016/j.scitotenv.2024.170654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 01/17/2024] [Accepted: 02/01/2024] [Indexed: 02/10/2024]
Abstract
Microplastics (MPs) are now prevalent in aquatic ecosystems, prompting the use of constructed wetlands (CWs) for remediation. However, the interaction between MPs and CWs, including removal efficiency, mechanisms, and impacts, remains a subject requiring significant investigation. This review investigates the removal of MPs in CWs and assesses their impact on the removal of carbon, nitrogen, and phosphorus. The analysis identifies crucial factors influencing the removal of MPs, with substrate particle size and CWs structure playing key roles. The review highlights substrate retention as the primary mechanism for MP removal. MPs hinder plant nitrogen uptake, microbial growth, community composition, and nitrogen-related enzymes, reducing nitrogen removal in CWs. For phosphorus and carbon removal, adverse effects of MPs on phosphorus elimination are observed, while their impact on carbon removal is minimal. Further research is needed to understand their influence fully. In summary, CWs are a promising option for treating MPs-contaminated wastewater, but the intricate relationship between MPs and CWs necessitates ongoing research to comprehend their dynamics and potential consequences.
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Affiliation(s)
- Shaochen Zhang
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China
| | - Cheng Shen
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China.
| | - Fuhao Zhang
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China
| | - Kejun Wei
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China
| | - Shengdao Shan
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China
| | - Yaqian Zhao
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, PR China
| | - Yu Bon Man
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, The Education University of Hong Kong, Hong Kong SAR, PR China
| | - Ming Hung Wong
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, The Education University of Hong Kong, Hong Kong SAR, PR China
| | - Jin Zhang
- Zhejiang Province Key Laboratory of Recycling and Eco-Treatment of Waste Biomass, Zhejiang University of Science and Technology, Hangzhou 310023, PR China.
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Li X, Qi M, Li Q, Wu B, Fu Y, Liang X, Yin G, Zheng Y, Dong H, Liu M, Hou L. Acidification Offset Warming-Induced Increase in N 2O Production in Estuarine and Coastal Sediments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:4989-5002. [PMID: 38442002 DOI: 10.1021/acs.est.3c10691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
Global warming and acidification, induced by a substantial increase in anthropogenic CO2 emissions, are expected to have profound impacts on biogeochemical cycles. However, underlying mechanisms of nitrous oxide (N2O) production in estuarine and coastal sediments remain rarely constrained under warming and acidification. Here, the responses of sediment N2O production pathways to warming and acidification were examined using a series of anoxic incubation experiments. Denitrification and N2O production were largely stimulated by the warming, while N2O production decreased under the acidification as well as the denitrification rate and electron transfer efficiency. Compared to warming alone, the combination of warming and acidification decreased N2O production by 26 ± 4%, which was mainly attributed to the decline of the N2O yield by fungal denitrification. Fungal denitrification was mainly responsible for N2O production under the warming condition, while bacterial denitrification predominated N2O production under the acidification condition. The reduced site preference of N2O under acidification reflects that the dominant pathways of N2O production were likely shifted from fungal to bacterial denitrification. In addition, acidification decreased the diversity and abundance of nirS-type denitrifiers, which were the keystone taxa mediating the low N2O production. Collectively, acidification can decrease sediment N2O yield through shifting the responsible production pathways, partly counteracting the warming-induced increase in N2O emissions, further reducing the positive climate warming feedback loop.
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Affiliation(s)
- Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Mengting Qi
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Qiuxuan Li
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Boshuang Wu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Yuxuan Fu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
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3
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Li X, Gao D, Li Y, Zheng Y, Dong H, Liang X, Liu M, Hou L. Increased Nitrogen Loading Facilitates Nitrous Oxide Production through Fungal and Chemodenitrification in Estuarine and Coastal Sediments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:2660-2671. [PMID: 36734984 DOI: 10.1021/acs.est.2c06602] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Estuarine and coastal environments are assumed to contribute to nitrous oxide (N2O) emissions under increasing nitrogen loading. However, isotopic and molecular mechanisms underlying N2O production pathways under elevated nitrogen concentration remain poorly understood. Here we used microbial inhibition, isotope mass balance, and molecular approaches to investigate N2O production mechanisms in estuarine and coastal sediments through a series of anoxic incubations. Site preference of the N2O molecule increased due to increasing nitrate concentration, suggesting the changes in N2O production pathways. Enhanced N2O production under high nitrate concentration was not mediated by bacterial denitrification, but instead was mainly regulated by fungal denitrification. Elevated nitrate concentration increased the contribution of fungal denitrification to N2O production by 11-25%, whereas it decreased bacterial N2O production by 16-33%. Chemodenitrification was also enhanced by high nitrate concentration, contributing to 13-28% of N2O production. Elevated nitrate concentration significantly mediated nirK-type denitrifiers structure and abundance, which are the keystone taxa driving N2O production. Collectively, these results suggest that increasing nitrate concentration can shift N2O production pathways from bacterial to fungal and chemodenitrification, which are mainly responsible for the enhanced N2O production and have widespread implications for N2O projections under ongoing nitrogen pollution in estuarine and coastal ecosystems.
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Affiliation(s)
- Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Dengzhou Gao
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Ye Li
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
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4
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Liu Y, Xu F, Ding L, Zhang G, Bai B, Han Y, Xiao L, Song Y, Li Y, Wan S, Li G. Microplastics reduce nitrogen uptake in peanut plants by damaging root cells and impairing soil nitrogen cycling. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130384. [PMID: 36444071 DOI: 10.1016/j.jhazmat.2022.130384] [Citation(s) in RCA: 40] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/28/2022] [Accepted: 11/09/2022] [Indexed: 06/16/2023]
Abstract
Microplastic (MP) pollution severely impairs the sustainable development of modern agriculture. However, the mechanisms underlying the effects of MP contaminants on nutrient cycles in agroecosystems are poorly understood. In this study, we examined the impacts of two types of MPs, polypropylene (PP) and rubber crumb (RC), on nitrogen (N) transformation and N cycling in soil-peanut system. High concentrations of PP (1% w/w) and RC (1% w/w) inhibited vegetative growth and N uptake in peanut plants by damaging root cells and disturbing soil N cycling. These MPs damaged the plasma membranes of root cells and caused oxidative stress, as evidenced by the decreased number of xylem vessels, which in turn inhibited N uptake by roots. Integrated metagenomic and metabolomic analyses revealed that the differential soil metabolite levels in response to MP treatment affected the microbial community structure in the rhizosphere and the expression of key N cycling-related genes, resulting in altered N transformation and the decreased availability of N in rhizosphere soil. These findings provide the first evidence of the effects of MPs on N uptake in peanut plants and shed light on the importance of rational management of MPs for crop growth and yield in agroecosystems.
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Affiliation(s)
- Yiyang Liu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Fangji Xu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Liping Ding
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Guanchu Zhang
- Shandong Peanut Research Institute, No.126, Wannianquan Road, Licang District, Qingdao 266100, China
| | - Bo Bai
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Han
- Shandong Academy of Grape, Jinan 250199, China
| | - Lina Xiao
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Song
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Ying Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Shubo Wan
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
| | - Guowei Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
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5
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Li S, Diao M, Wang S, Zhu X, Dong X, Strous M, Ji G. Distinct oxygen isotope fractionations driven by different electron donors during microbial nitrate reduction in lake sediments. ENVIRONMENTAL MICROBIOLOGY REPORTS 2022; 14:812-821. [PMID: 35691702 DOI: 10.1111/1758-2229.13101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 05/29/2022] [Indexed: 06/15/2023]
Abstract
Microbial nitrate reduction can be driven by organic carbon oxidation, as well as by inorganic electron donors, such as reduced forms of sulfur and iron. An apparent inverse oxygen isotope fractionation effect was observed during nitrate reduction in sediment incubations from five sampling sites of a freshwater lake, Hongze Lake, China. Incubations with organic and inorganic electron donor additions were performed. Especially, the inverse oxygen isotope effect was intensified after glucose addition, whereas the incubations with sulfide and Fe2+ showed normal fractionation factors. Nitrate reductase encoding genes, napA and narG, were analysed with metagenomics. Higher napA/narG ratios were associated with higher oxygen fractionation factors. The most abundant clade (59%) of NapA in the incubation with glucose was affiliated with Rhodocyclales. In contrast, it only accounted for 8%-9% of NapA in the incubations with sulfide and Fe2+ . Differences in nitrate reductases might explain different oxygen isotope effects. Our findings also suggested that large variance of O-nitrate isotope fractionations might have to be considered in the interpretation of natural isotope records.
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Affiliation(s)
- Shengjie Li
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, Department of Environmental Engineering, Peking University, Beijing, China
- Department of Geoscience, University of Calgary, Calgary, AB, Canada
| | - Muhe Diao
- Department of Geoscience, University of Calgary, Calgary, AB, Canada
| | - Shuo Wang
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, Department of Environmental Engineering, Peking University, Beijing, China
| | - Xianfang Zhu
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, Department of Environmental Engineering, Peking University, Beijing, China
| | - Xiaoli Dong
- Department of Geoscience, University of Calgary, Calgary, AB, Canada
| | - Marc Strous
- Department of Geoscience, University of Calgary, Calgary, AB, Canada
| | - Guodong Ji
- Key Laboratory of Water and Sediment Sciences, Ministry of Education, Department of Environmental Engineering, Peking University, Beijing, China
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6
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Regulation of the electrocatalytic nitrogen cycle based on sequential proton–electron transfer. Nat Catal 2022. [DOI: 10.1038/s41929-022-00833-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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7
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Shen M, Song B, Zhou C, Almatrafi E, Hu T, Zeng G, Zhang Y. Recent advances in impacts of microplastics on nitrogen cycling in the environment: A review. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152740. [PMID: 34974017 DOI: 10.1016/j.scitotenv.2021.152740] [Citation(s) in RCA: 53] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/21/2021] [Accepted: 12/21/2021] [Indexed: 06/14/2023]
Abstract
Nitrogen cycling plays a decisive role in biogeochemistry, and largely depends on microbial driven nitrogen transformation. The environmental problems caused by microplastics are becoming more serious, and the analysis and control of its pollution in the environment have become a research hotspot in the field. The nitrogen transformation and nitrogen cycling in the environment are mainly driven by microorganisms in the environment, and the existence of microplastics can affect the microbial population, abundance and type, thus affecting the transformation of nitrogen. The effect of microplastics on microorganisms involved in nitrogen transformation is briefly described. This paper mainly reviews the research progress on the impacts of microplastics on nitrogen transformation and nitrogen cycling in water, soil, sediment and sewage sludge. Microplastic type, size and concentration can cause obvious difference in the impacts of microplastics on nitrogen transformation. Then, response and mechanism of microplastics to microorganism mediated nitrogen transformation and nitrogen cycling are introduced. Processes of nitrogen transformation are affected by interfering with microorganism diversity and structure, enzyme activities and related coding genes and oxygen flux. Additionally, additives released from microplastics can also affect the microbial activity. However, mechanisms of microplastics on environmental nitrogen transformation and nitrogen cycling are not fully understood due to the lack of relevant research. There are effective strategies to evaluate complex environmental systems, prolong action time, strengthen multi factor and multi-level research, and assist molecular biology and stable isotope technology. This review article can provide valuable insights into the impact of microplastics on microorganisms mediated nitrogen transformation processes and evaluate the impact on ecological and environmental health.
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Affiliation(s)
- Maocai Shen
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China
| | - Biao Song
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Center of Research Excellence in Renewable Energy and Power Systems, Center of Excellence in Desalination Technology, Department of Mechanical Engineering, Faculty of Engineering-Rabigh, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China
| | - Chengyun Zhou
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Center of Research Excellence in Renewable Energy and Power Systems, Center of Excellence in Desalination Technology, Department of Mechanical Engineering, Faculty of Engineering-Rabigh, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China
| | - Eydhah Almatrafi
- Center of Research Excellence in Renewable Energy and Power Systems, Center of Excellence in Desalination Technology, Department of Mechanical Engineering, Faculty of Engineering-Rabigh, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Tong Hu
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Center of Research Excellence in Renewable Energy and Power Systems, Center of Excellence in Desalination Technology, Department of Mechanical Engineering, Faculty of Engineering-Rabigh, King Abdulaziz University, Jeddah 21589, Saudi Arabia; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China.
| | - Yaxin Zhang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control (Ministry of Education), Hunan University, Changsha 410082, PR China.
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8
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Gao D, Hou L, Liu M, Zheng Y, Yin G, Niu Y. N 2O emission dynamics along an intertidal elevation gradient in a subtropical estuary: Importance of N 2O consumption. ENVIRONMENTAL RESEARCH 2022; 205:112432. [PMID: 34843720 DOI: 10.1016/j.envres.2021.112432] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 11/09/2021] [Accepted: 11/22/2021] [Indexed: 06/13/2023]
Abstract
Studying nitrous oxide (N2O) production and consumption processes along an intertidal elevation gradient can improve the understanding of N2O dynamics among coastal wetlands. A natural-abundance isotope technique was applied to characterize the processes responsible for N2O emission in high, middle and low intertidal zones in the Yangtze Estuary. The results showed that N2O emission rates in high tidal zones (0.84 ± 0.35 nmol g-1 h-1) were significantly higher than those in middle (0.21 ± 0.04 nmol g-1 h-1) and low tidal zones (0.26 ± 0.05 nmol g-1 h-1). Gross N2O production and consumption rates were greater in high and low tidal zones than in middle tidal zones, whereas N2O consumption proportions generally increased from high to low tidal zones. N2O consumption was quite pronounced, implying that N2O emission in estuarine wetlands accounts for only a small fraction of the total production. Higher degrees of N2O consumption were the pivotal driver of less N2O emission in low tidal zones. Bacterial denitrification (>84%) was the dominant pathway, although hydroxylamine (NH2OH) oxidation/fungal denitrification contributed substantially to N2O production in high tidal flats. The contribution to N2O production exhibited a decrease in NH2OH oxidation/fungal denitrification and an increase in bacterial denitrification with decreasing elevation. Changes in N2O dynamics along the elevation gradient were affected by carbon and nitrogen substrate availabilities as well as the redox environments. Overall, our findings highlight the importance of N2O consumption in controlling N2O emission in intertidal wetlands, especially with higher inundation frequencies and durations.
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Affiliation(s)
- Dengzhou Gao
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China; Key Laboratory of Geographic Information Science of the Ministry of Education, College of Geographical Sciences, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China.
| | - Min Liu
- Key Laboratory of Geographic Information Science of the Ministry of Education, College of Geographical Sciences, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China
| | - Yanling Zheng
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China; Key Laboratory of Geographic Information Science of the Ministry of Education, College of Geographical Sciences, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science of the Ministry of Education, College of Geographical Sciences, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China
| | - Yuhui Niu
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, 500 Dongchuan Road, Shanghai, 200241, China
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9
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Gallarotti N, Barthel M, Verhoeven E, Pereira EIP, Bauters M, Baumgartner S, Drake TW, Boeckx P, Mohn J, Longepierre M, Mugula JK, Makelele IA, Ntaboba LC, Six J. In-depth analysis of N 2O fluxes in tropical forest soils of the Congo Basin combining isotope and functional gene analysis. THE ISME JOURNAL 2021; 15:3357-3374. [PMID: 34035444 PMCID: PMC8528805 DOI: 10.1038/s41396-021-01004-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 04/14/2021] [Accepted: 04/30/2021] [Indexed: 02/04/2023]
Abstract
Primary tropical forests generally exhibit large gaseous nitrogen (N) losses, occurring as nitric oxide (NO), nitrous oxide (N2O) or elemental nitrogen (N2). The release of N2O is of particular concern due to its high global warming potential and destruction of stratospheric ozone. Tropical forest soils are predicted to be among the largest natural sources of N2O; however, despite being the world's second-largest rainforest, measurements of gaseous N-losses from forest soils of the Congo Basin are scarce. In addition, long-term studies investigating N2O fluxes from different forest ecosystem types (lowland and montane forests) are scarce. In this study we show that fluxes measured in the Congo Basin were lower than fluxes measured in the Neotropics, and in the tropical forests of Australia and South East Asia. In addition, we show that despite different climatic conditions, average annual N2O fluxes in the Congo Basin's lowland forests (0.97 ± 0.53 kg N ha-1 year-1) were comparable to those in its montane forest (0.88 ± 0.97 kg N ha-1 year-1). Measurements of soil pore air N2O isotope data at multiple depths suggests that a microbial reduction of N2O to N2 within the soil may account for the observed low surface N2O fluxes and low soil pore N2O concentrations. The potential for microbial reduction is corroborated by a significant abundance and expression of the gene nosZ in soil samples from both study sites. Although isotopic and functional gene analyses indicate an enzymatic potential for complete denitrification, combined gaseous N-losses (N2O, N2) are unlikely to account for the missing N-sink in these forests. Other N-losses such as NO, N2 via Feammox or hydrological particulate organic nitrogen export could play an important role in soils of the Congo Basin and should be the focus of future research.
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Affiliation(s)
- Nora Gallarotti
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland
| | - Matti Barthel
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland
| | - Elizabeth Verhoeven
- grid.4391.f0000 0001 2112 1969College of Agricultural Sciences, Oregon State University, Corvallis, OR USA
| | - Engil Isadora Pujol Pereira
- grid.449717.80000 0004 5374 269XSchool of Earth, Environmental, and Marine Sciences, University of Texas Rio Grande Valley, Edinburg, TX USA
| | - Marijn Bauters
- grid.5342.00000 0001 2069 7798Isotope Bioscience Laboratory, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium ,grid.5342.00000 0001 2069 7798Computational and Applied Vegetation Ecology Lab, Department of Environment, Ghent University, Ghent, Belgium
| | - Simon Baumgartner
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland ,grid.7942.80000 0001 2294 713XEarth and Life Institute, Université Catholique de Louvain, Louvain, Belgium
| | - Travis W. Drake
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland
| | - Pascal Boeckx
- grid.5342.00000 0001 2069 7798Isotope Bioscience Laboratory, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Joachim Mohn
- grid.7354.50000 0001 2331 3059Laboratory for Air Pollution/Environmental Technology, Swiss Federal Laboratories of Materials Science and Technology, Empa Dubendorf, Switzerland
| | - Manon Longepierre
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland
| | - John Kalume Mugula
- grid.442836.f0000 0004 7477 7760Département de Biologie, Université Officielle de Bukavu, Bukavu, Democratic Republic of Congo
| | - Isaac Ahanamungu Makelele
- grid.442836.f0000 0004 7477 7760Département de Biologie, Université Officielle de Bukavu, Bukavu, Democratic Republic of Congo ,grid.5342.00000 0001 2069 7798Department of Green Chemistry and Technology, Ghent University, Ghent, Belgium
| | - Landry Cizungu Ntaboba
- grid.442834.d0000 0004 6011 4325Département d’ Agronomie, Université Catholique de Bukavu, Bukavu, Democratic Republic of Congo
| | - Johan Six
- grid.5801.c0000 0001 2156 2780Department of Environmental Systems Science, Swiss Federal Institute of Technology, ETH Zurich, Zurich, Switzerland
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10
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Breider F, Yoshikawa C, Makabe A, Toyoda S, Wakita M, Matsui Y, Kawagucci S, Fujiki T, Harada N, Yoshida N. Response of N 2O production rate to ocean acidification in the western North Pacific. NATURE CLIMATE CHANGE 2019; 9:954-958. [PMID: 31857827 PMCID: PMC6923134 DOI: 10.1038/s41558-019-0605-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 09/17/2019] [Indexed: 05/18/2023]
Abstract
Ocean acidification induced by the increase of anthropogenic CO2 emissions has a profound impact on marine organisms and biogeochemical processes.1 The response of marine microbial activities to ocean acidification might play a crucial role in the future evolution of air-sea fluxes of biogenic gases such as nitrous oxide (N2O), a strong greenhouse gas and the dominant stratospheric ozone-depleting substance.2 Here, we examine the response of N2O production from nitrification to acidification in a series of incubation experiments conducted in subtropical and subarctic western North Pacific. The experiments show that, when pH was reduced, the N2O production rate during nitrification measured at subarctic stations increased significantly whereas nitrification rates remained stable or decreased. Contrary to what was previously thought, these results suggest that the effect of ocean acidification on N2O production during nitrification and nitrification rates are likely uncoupled. Collectively these results suggest that, if seawater pH continues to decline at the same rate, ocean acidification could increase the marine N2O production during nitrification in subarctic North Pacific by 185 to 491% by the end of the century.
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Affiliation(s)
- Florian Breider
- Tokyo Institute of Technology, Department of Environmental Chemistry
and Engineering, Nagatsuta 4259, Midori-ku, Yokohama, 226-8502 Kanagawa, Japan
- Ecole Polytechnique Fédérale de Lausanne - EPFL,
Institute of Environmental Engineering, Station 2, CH-1015 Lausanne,
Switzerland
- corresponding author: Florian Breider, Ecole Polytechnique
Fédérale de Lausanne - EPFL, Institute of Environmental
Engineering, Station 2, CH-1015 Lausanne, Switzerland,
| | - Chisato Yoshikawa
- Research Institute for Marine Resources Utilization, Japan Agency of
Marine Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka-city 237-0061,
Japan
| | - Akiko Makabe
- Institute for Extra-cutting-edge Science and Technology Avant-garde
Research (X-star), Japan Agency of Marine Earth Science and Technology, 2-15
Natsushima-cho, Yokosuka-city 237-0061, Japan
| | - Sakae Toyoda
- Tokyo Institute of Technology, School of Materials and Chemical
Technology, Nagatsuta 4259, Midori-ku, Yokohama, 226-8502 Kanagawa, Japan
| | - Masahide Wakita
- Research Institute for Global Change (RIGC), Japan Agency of Marine
Earth Science and Technology,2-15 Natsushima-cho, Yokosuka-city 237-0061,
Japan
| | - Yohei Matsui
- Atmosphere and Ocean Research Institute, The University of Tokyo,
5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8564 Japan
| | - Shinsuke Kawagucci
- Institute for Extra-cutting-edge Science and Technology Avant-garde
Research (X-star), Japan Agency of Marine Earth Science and Technology, 2-15
Natsushima-cho, Yokosuka-city 237-0061, Japan
| | - Tetsuichi Fujiki
- Research Institute for Global Change (RIGC), Japan Agency of Marine
Earth Science and Technology,2-15 Natsushima-cho, Yokosuka-city 237-0061,
Japan
| | - Naomi Harada
- Research Institute for Global Change (RIGC), Japan Agency of Marine
Earth Science and Technology,2-15 Natsushima-cho, Yokosuka-city 237-0061,
Japan
| | - Naohiro Yoshida
- Tokyo Institute of Technology, Department of Environmental Chemistry
and Engineering, Nagatsuta 4259, Midori-ku, Yokohama, 226-8502 Kanagawa, Japan
- Tokyo Institute of Technology, School of Materials and Chemical
Technology, Nagatsuta 4259, Midori-ku, Yokohama, 226-8502 Kanagawa, Japan
- Tokyo Institute of Technology, Earth-Life Science Institute, Meguro,
152-8551 Tokyo, Japan
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11
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Yeung LY, Haslun JA, Ostrom NE, Sun T, Young ED, van Kessel MAHJ, Lücker S, Jetten MSM. In Situ Quantification of Biological N 2 Production Using Naturally Occurring 15N 15N. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:5168-5175. [PMID: 30945532 PMCID: PMC6506800 DOI: 10.1021/acs.est.9b00812] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 04/02/2019] [Accepted: 04/04/2019] [Indexed: 06/09/2023]
Abstract
We describe an approach for determining biological N2 production in soils based on the proportions of naturally occurring 15N15N in N2. Laboratory incubation experiments reveal that biological N2 production, whether by denitrification or anaerobic ammonia oxidation, yields proportions of 15N15N in N2 that are within 1‰ of that predicted for a random distribution of 15N and 14N atoms. This relatively invariant isotopic signature contrasts with that of the atmosphere, which has 15N15N proportions in excess of the random distribution by 19.1 ± 0.1‰. Depth profiles of gases in agricultural soils from the Kellogg Biological Station Long-Term Ecological Research site show biological N2 accumulation that accounts for up to 1.6% of the soil N2. One-dimensional reaction-diffusion modeling of these soil profiles suggests that subsurface N2 pulses leading to surface emission rates as low as 0.3 mmol N2 m-2 d-1 can be detected with current analytical precision, decoupled from N2O production.
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Affiliation(s)
- Laurence Y. Yeung
- Department
of Earth, Environmental and Planetary Sciences, Rice University, Houston, Texas 77005, United States
| | - Joshua A. Haslun
- Department
of Integrative Biology and Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, Michigan 48824, United States
| | - Nathaniel E. Ostrom
- Department
of Integrative Biology and Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, Michigan 48824, United States
| | - Tao Sun
- Department
of Earth, Environmental and Planetary Sciences, Rice University, Houston, Texas 77005, United States
| | - Edward D. Young
- Department
of Earth, Planetary, and Space Sciences, University of California-Los Angeles, Los Angeles, California 90095, United States
| | | | - Sebastian Lücker
- Department
of Microbiology, Radboud University, Nijmegen 6525 AJ, The Netherlands
| | - Mike S. M. Jetten
- Department
of Microbiology, Radboud University, Nijmegen 6525 AJ, The Netherlands
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12
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Denk TRA, Kraus D, Kiese R, Butterbach-Bahl K, Wolf B. Constraining N cycling in the ecosystem model LandscapeDNDC with the stable isotope model SIMONE. Ecology 2019; 100:e02675. [PMID: 30821344 DOI: 10.1002/ecy.2675] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Revised: 11/21/2018] [Accepted: 02/04/2019] [Indexed: 11/08/2022]
Abstract
The isotopic composition (ic) of soil nitrogen (N) and, more recently, the intramolecular distribution of 15 N in the N2 O molecule (site preference, SP) are powerful instruments to identify dominant N turnover processes, and to attribute N2 O emissions to their source processes. Despite the process information contained in the ic of N species and the associated potential for model validation, the implementation of isotopes in ecosystem models has lagged behind. To foster the validation of ecosystem models based on the ic of N species, we developed the stable isotope model for nutrient cycles (SIMONE). SIMONE uses fluxes between ecosystem N pools (soil organic N, mineral N, plants, microbes) calculated by biogeochemical models, and literature isotope effects for these processes to calculate the ic of N species. Here, we present the concept of SIMONE, apply it to simulations of the biogeochemical model LandscapeDNDC, and assess the capability of 15 N-N2 O and, to our knowledge for the first time, SP, to constrain simulated N fluxes by LandscapeDNDC. LandscapeDNDC successfully simulated N2 O emission, soil nitrate, and ammonium, as well as soil environmental conditions of an intensively managed grassland site in Switzerland. Accordingly, the dynamics of 15 N-N2 O and SP of soil N2 O fluxes as simulated by SIMONE agreed well with measurements, though 15 N-N2 O was on average underestimated and SP overestimated (root-mean-square error [RMSE] of 8.4‰ and 7.3‰, respectively). Although 15 N-N2 O could not constrain the N cycling process descriptions of LandscapeDNDC, the overestimation of SP indicated an overestimation of simulated nitrification rates by 10-59% at low water content, suggesting the revision of the corresponding model parameterization. Our findings show that N isotope modeling in combination with only recently available high- frequency measurements of the N2 O ic are promising tools to identify and address weaknesses in N cycling of ecosystem models. This will finally contribute to augmenting the development of model-based strategies for mitigating N pollution.
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Affiliation(s)
- Tobias R A Denk
- Karlsruhe Institute of Technology, Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen, 82467, Germany
| | - David Kraus
- Karlsruhe Institute of Technology, Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen, 82467, Germany
| | - Ralf Kiese
- Karlsruhe Institute of Technology, Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen, 82467, Germany
| | - Klaus Butterbach-Bahl
- Karlsruhe Institute of Technology, Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen, 82467, Germany
| | - Benjamin Wolf
- Karlsruhe Institute of Technology, Institute for Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU), Kreuzeckbahnstrasse 19, Garmisch-Partenkirchen, 82467, Germany
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13
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14
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Higgins SA, Schadt CW, Matheny PB, Löffler FE. Phylogenomics Reveal the Dynamic Evolution of Fungal Nitric Oxide Reductases and Their Relationship to Secondary Metabolism. Genome Biol Evol 2018; 10:2474-2489. [PMID: 30165640 PMCID: PMC6161760 DOI: 10.1093/gbe/evy187] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/23/2018] [Indexed: 12/16/2022] Open
Abstract
Fungi expressing P450nor, an unconventional nitric oxide (NO) reducing cytochrome P450, are considered significant contributors to environmental nitrous oxide (N2O) emissions. Despite extensive efforts, fungal contributions to N2O emissions remain uncertain. For example, the majority of N2O emitted from antibiotic-amended soil microcosms is attributed to fungal activity, yet axenic fungal cultures do not couple N-oxyanion respiration to growth and these fungi produce only minor quantities of N2O. To assist in reconciling these conflicting observations and produce a benchmark genomic analysis of fungal denitrifiers, genes underlying denitrification were examined in >700 fungal genomes. Of 167 p450nor—containing genomes identified, 0, 30, and 48 also harbored the denitrification genes narG, napA, or nirK, respectively. Compared with napA and nirK, p450nor was twice as abundant and exhibited 2–5-fold more gene duplications, losses, and transfers, indicating a disconnect between p450nor presence and denitrification potential. Furthermore, cooccurrence of p450nor with genes encoding NO-detoxifying flavohemoglobins (Spearman r = 0.87, p = 1.6e−10) confounds hypotheses regarding P450nor’s primary role in NO detoxification. Instead, ancestral state reconstruction united P450nor with actinobacterial cytochrome P450s (CYP105) involved in secondary metabolism (SM) and 19 (11%) p450nor-containing genomic regions were predicted to be SM clusters. Another 40 (24%) genomes harbored genes nearby p450nor predicted to encode hallmark SM functions, providing additional contextual evidence linking p450nor to SM. These findings underscore the potential physiological implications of widespread p450nor gene transfer, support the undiscovered affiliation of p450nor with fungal SM, and challenge the hypothesis of p450nor’s primary role in denitrification.
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Affiliation(s)
- Steven A Higgins
- Department of Microbiology, University of Tennessee, Knoxville.,Biosciences Division, Oak Ridge National Laboratory, Oak Ridge
| | - Christopher W Schadt
- Department of Microbiology, University of Tennessee, Knoxville.,Biosciences Division, Oak Ridge National Laboratory, Oak Ridge.,University of Tennessee and Oak Ridge National Laboratory (UT-ORNL), Joint Institute for Biological Sciences (JIBS), Oak Ridge
| | - Patrick B Matheny
- Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville
| | - Frank E Löffler
- Department of Microbiology, University of Tennessee, Knoxville.,Biosciences Division, Oak Ridge National Laboratory, Oak Ridge.,University of Tennessee and Oak Ridge National Laboratory (UT-ORNL), Joint Institute for Biological Sciences (JIBS), Oak Ridge.,Department of Civil and Environmental Engineering, University of Tennessee, Knoxville.,Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville.,Center for Environmental Biotechnology, University of Tennessee, Knoxville
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15
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Begum S, Subramanian R. Bonding and spectroscopic analyses of N 2O-CS 2 and N 2O-OCS heterodimer complexes and their atmospheric consequences. Phys Chem Chem Phys 2017; 19:26412-26422. [PMID: 28944392 DOI: 10.1039/c7cp03936k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Different isomers of the valence isoelectronic pairs of the heterodimers N2O-SCS and N2O-OCS were investigated using MP2 and CCSD(T) methods with the aug-cc-pVXZ (X = D, T) basis set with anharmonic frequency calculations. Interaction energies of both the heterodimers were estimated at the CBS limit and for CCSD(T)/aug-cc-pVTZ. One isomer was located for the N2O-SCS heterodimer. In the case of the N2O-OCS heterodimer, three planar slipped-parallel isomers were characterized. There was no significant change in electron density at the bond critical points (BCPs) of various intra-bonds but the presence of inter-bonds with a weak electron density at the BCPs in the complexes was found as per the results from the quantum theory of atoms in molecules (QTAIM) analysis. The interorbital interactions of the monomer in the heterodimers are discussed herein in terms of the natural bond orbital (NBO) charge transfer. Symmetry-adapted perturbation analysis was performed for all the isomers. In the case of the stable complex of N2O-SCS, induction dominated over the dispersion energy. Among the N2O-OCS isomers, the dispersion effect predominates for the most stable isomer, while for the other two isomers, the induction effect is dominant. Frequency calculations for these complexes showed a number of interactions induced by the low frequency modes in the far IR region. The atmospheric implications are also discussed for these complexes.
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Affiliation(s)
- Samiyara Begum
- Department of Chemistry, Indian Institute of Technology, Patna, 800013, India.
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16
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Evidence for fungal and chemodenitrification based N 2O flux from nitrogen impacted coastal sediments. Nat Commun 2017; 8:15595. [PMID: 28580932 PMCID: PMC5465357 DOI: 10.1038/ncomms15595] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 03/06/2017] [Indexed: 12/17/2022] Open
Abstract
Although increasing atmospheric nitrous oxide (N2O) has been linked to nitrogen loading, predicting emissions remains difficult, in part due to challenges in disentangling diverse N2O production pathways. As coastal ecosystems are especially impacted by elevated nitrogen, we investigated controls on N2O production mechanisms in intertidal sediments using novel isotopic approaches and microsensors in flow-through incubations. Here we show that during incubations with elevated nitrate, increased N2O fluxes are not mediated by direct bacterial activity, but instead are largely catalysed by fungal denitrification and/or abiotic reactions (e.g., chemodenitrification). Results of these incubations shed new light on nitrogen cycling complexity and possible factors underlying variability of N2O fluxes, driven in part by fungal respiration and/or iron redox cycling. As both processes exhibit N2O yields typically far greater than direct bacterial production, these results emphasize their possibly substantial, yet widely overlooked, role in N2O fluxes, especially in redox-dynamic sediments of coastal ecosystems.
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17
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Toyoda S, Yoshida N, Koba K. Isotopocule analysis of biologically produced nitrous oxide in various environments. MASS SPECTROMETRY REVIEWS 2017; 36:135-160. [PMID: 25869149 DOI: 10.1002/mas.21459] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Revised: 01/13/2015] [Accepted: 01/13/2015] [Indexed: 06/04/2023]
Abstract
Natural abundance ratios of isotopocules, molecules that have the same chemical constitution and configuration, but that only differ in isotope substitution, retain a record of a compound's origin and reactions. A method to measure isotopocule ratios of nitrous oxide (N2 O) has been established by using mass analysis of molecular ions and fragment ions. The method has been applied widely to environmental samples from the atmosphere, ocean, fresh water, soils, and laboratory-simulation experiments. Results show that isotopocule ratios, particularly the 15 N-site preference (difference between isotopocule ratios 14 N15 N16 O/14 N14 N16 O and 15 N14 N16 O/14 N14 N16 O), have a wide range that depends on their production and consumption processes. Observational and laboratory studies of N2 O related to biological processes are reviewed and discussed to elucidate complex material cycles of this trace gas, which causes global warming and stratospheric ozone depletion. © 2015 Wiley Periodicals, Inc. Mass Spec Rev 36:135-160, 2017.
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Affiliation(s)
- Sakae Toyoda
- Department of Environmental Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan
| | - Naohiro Yoshida
- Department of Environmental Science and Technology, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan
- Department of Environmental Chemistry and Engineering, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8502, Japan
- Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan
| | - Keisuke Koba
- Institute of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-City, Tokyo 183-8509, Japan
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18
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Frame CH, Lau E, Nolan EJ, Goepfert TJ, Lehmann MF. Acidification Enhances Hybrid N 2O Production Associated with Aquatic Ammonia-Oxidizing Microorganisms. Front Microbiol 2017; 7:2104. [PMID: 28119667 PMCID: PMC5220105 DOI: 10.3389/fmicb.2016.02104] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2016] [Accepted: 12/13/2016] [Indexed: 02/01/2023] Open
Abstract
Ammonia-oxidizing microorganisms are an important source of the greenhouse gas nitrous oxide (N2O) in aquatic environments. Identifying the impact of pH on N2O production by ammonia oxidizers is key to understanding how aquatic greenhouse gas fluxes will respond to naturally occurring pH changes, as well as acidification driven by anthropogenic CO2. We assessed N2O production rates and formation mechanisms by communities of ammonia-oxidizing bacteria (AOB) and archaea (AOA) in a lake and a marine environment, using incubation-based nitrogen (N) stable isotope tracer methods with 15N-labeled ammonium (15NH4+) and nitrite (15NO2−), and also measurements of the natural abundance N and O isotopic composition of dissolved N2O. N2O production during incubations of water from the shallow hypolimnion of Lake Lugano (Switzerland) was significantly higher when the pH was reduced from 7.54 (untreated pH) to 7.20 (reduced pH), while ammonia oxidation rates were similar between treatments. In all incubations, added NH4+ was the source of most of the N incorporated into N2O, suggesting that the main N2O production pathway involved hydroxylamine (NH2OH) and/or NO2− produced by ammonia oxidation during the incubation period. A small but significant amount of N derived from exogenous/added 15NO2− was also incorporated into N2O, but only during the reduced-pH incubations. Mass spectra of this N2O revealed that NH4+ and 15NO2− each contributed N equally to N2O by a “hybrid-N2O” mechanism consistent with a reaction between NH2OH and NO2−, or compounds derived from these two molecules. Nitrifier denitrification was not an important source of N2O. Isotopomeric N2O analyses in Lake Lugano were consistent with incubation results, as 15N enrichment of the internal N vs. external N atoms produced site preferences (25.0–34.4‰) consistent with NH2OH-dependent hybrid-N2O production. Hybrid-N2O formation was also observed during incubations of seawater from coastal Namibia with 15NH4+ and NO2−. However, the site preference of dissolved N2O here was low (4.9‰), indicating that another mechanism, not captured during the incubations, was important. Multiplex sequencing of 16S rRNA revealed distinct ammonia oxidizer communities: AOB dominated numerically in Lake Lugano, and AOA dominated in the seawater. Potential for hybrid N2O formation exists among both communities, and at least in AOB-dominated environments, acidification may accelerate this mechanism.
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Affiliation(s)
- Caitlin H Frame
- Department of Environmental Sciences, University of Basel Basel, Switzerland
| | - Evan Lau
- Department of Natural Sciences and Mathematics, West Liberty University West Liberty, WV, USA
| | - E Joseph Nolan
- Department of Natural Sciences and Mathematics, West Liberty University West Liberty, WV, USA
| | | | - Moritz F Lehmann
- Department of Environmental Sciences, University of Basel Basel, Switzerland
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19
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Phillips RL, Song B, McMillan AMS, Grelet G, Weir BS, Palmada T, Tobias C. Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question. Sci Rep 2016; 6:39077. [PMID: 27976694 PMCID: PMC5157039 DOI: 10.1038/srep39077] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 11/17/2016] [Indexed: 11/09/2022] Open
Abstract
Removal of excess nitrogen (N) can best be achieved through denitrification processes that transform N in water and terrestrial ecosystems to di-nitrogen (N2) gas. The greenhouse gas nitrous oxide (N2O) is considered an intermediate or end-product in denitrification pathways. Both abiotic and biotic denitrification processes use a single N source to form N2O. However, N2 can be formed from two distinct N sources (known as hybrid N2) through biologically mediated processes of anammox and codenitrification. We questioned if hybrid N2 produced during fungal incubation at neutral pH could be attributed to abiotic nitrosation and if N2O was consumed during N2 formation. Experiments with gas chromatography indicated N2 was formed in the presence of live and dead fungi and in the absence of fungi, while N2O steadily increased. We used isotope pairing techniques and confirmed abiotic production of hybrid N2 under both anoxic and 20% O2 atmosphere conditions. Our findings question the assumptions that (1) N2O is an intermediate required for N2 formation, (2) production of N2 and N2O requires anaerobiosis, and (3) hybrid N2 is evidence of codenitrification and/or anammox. The N cycle framework should include abiotic production of N2.
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Affiliation(s)
| | - Bongkeun Song
- Dept. of Biological Sciences, Virginia Institute of Marine Science, Gloucester Point, Virginia, USA
| | | | - Gwen Grelet
- Landcare Research, Gerald Street, Lincoln, New Zealand
| | - Bevan S Weir
- Landcare Research, Gerald Street, Lincoln, New Zealand
| | | | - Craig Tobias
- Dept. of Marine Sciences, University of Connecticut, Groton, Connecticut, USA
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20
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Abstract
CytP450s have a cysteine-bound heme cofactor that, in its as-isolated resting (oxidized) form, can be conclusively described as a ferric thiolate species. Unlike the native enzyme, most synthetic thiolate-bound ferric porphyrins are unstable in air unless the axial thiolate ligand is sterically protected. Spectroscopic investigations on a series of synthetic mimics of cytP450 indicate that a thiolate-bound ferric porphyrin coexists in organic solutions at room temperature (RT) with a thiyl-radical bound ferrous porphyrin, i.e., its valence tautomer. The ferric thiolate state is favored by greater enthalpy and is air stable. The ferrous thiyl state is favored by entropy, populates at RT, and degrades in air. These ground states can be reversibly interchanged at RT by the addition or removal of water to the apolar medium. It is concluded that hydrogen bonding and local electrostatics protect the resting oxidized cytP450 active site from degradation in air by stabilizing the ferric thiolate ground state in contrast to its synthetic analogs.
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21
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Harris E, Joss A, Emmenegger L, Kipf M, Wolf B, Mohn J, Wunderlin P. Isotopic evidence for nitrous oxide production pathways in a partial nitritation-anammox reactor. WATER RESEARCH 2015; 83:258-270. [PMID: 26164660 DOI: 10.1016/j.watres.2015.06.040] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2014] [Revised: 03/25/2015] [Accepted: 06/25/2015] [Indexed: 06/04/2023]
Abstract
Nitrous oxide (N2O) production pathways in a single stage, continuously fed partial nitritation-anammox reactor were investigated using online isotopic analysis of offgas N2O with quantum cascade laser absorption spectroscopy (QCLAS). N2O emissions increased when reactor operating conditions were not optimal, for example, high dissolved oxygen concentration. SP measurements indicated that the increase in N2O was due to enhanced nitrifier denitrification, generally related to nitrite build-up in the reactor. The results of this study confirm that process control via online N2O monitoring is an ideal method to detect imbalances in reactor operation and regulate aeration, to ensure optimal reactor conditions and minimise N2O emissions. Under normal operating conditions, the N2O isotopic site preference (SP) was much higher than expected - up to 40‰ - which could not be explained within the current understanding of N2O production pathways. Various targeted experiments were conducted to investigate the characteristics of N2O formation in the reactor. The high SP measurements during both normal operating and experimental conditions could potentially be explained by a number of hypotheses: i) unexpectedly strong heterotrophic N2O reduction, ii) unknown inorganic or anammox-associated N2O production pathway, iii) previous underestimation of SP fractionation during N2O production from NH2OH, or strong variations in SP from this pathway depending on reactor conditions. The second hypothesis - an unknown or incompletely characterised production pathway - was most consistent with results, however the other possibilities cannot be discounted. Further experiments are needed to distinguish between these hypotheses and fully resolve N2O production pathways in PN-anammox systems.
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Affiliation(s)
- Eliza Harris
- Laboratory for Air Pollution and Environmental Technology, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland.
| | - Adriano Joss
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Lukas Emmenegger
- Laboratory for Air Pollution and Environmental Technology, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Marco Kipf
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Benjamin Wolf
- Laboratory for Air Pollution and Environmental Technology, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland; Institute of Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology, Kreuzeckbahnstrasse 19, 82467 Garmisch-Partenkirchen, Germany
| | - Joachim Mohn
- Laboratory for Air Pollution and Environmental Technology, Empa, Überlandstrasse 129, 8600 Dübendorf, Switzerland
| | - Pascal Wunderlin
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
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22
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Snider DM, Venkiteswaran JJ, Schiff SL, Spoelstra J. From the ground up: global nitrous oxide sources are constrained by stable isotope values. PLoS One 2015; 10:e0118954. [PMID: 25811179 PMCID: PMC4374930 DOI: 10.1371/journal.pone.0118954] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Accepted: 01/08/2015] [Indexed: 11/18/2022] Open
Abstract
Rising concentrations of nitrous oxide (N2O) in the atmosphere are causing widespread concern because this trace gas plays a key role in the destruction of stratospheric ozone and it is a strong greenhouse gas. The successful mitigation of N2O emissions requires a solid understanding of the relative importance of all N2O sources and sinks. Stable isotope ratio measurements (δ15N-N2O and δ18O-N2O), including the intramolecular distribution of 15N (site preference), are one way to track different sources if they are isotopically distinct. ‘Top-down’ isotope mass-balance studies have had limited success balancing the global N2O budget thus far because the isotopic signatures of soil, freshwater, and marine sources are poorly constrained and a comprehensive analysis of global N2O stable isotope measurements has not been done. Here we used a robust analysis of all available in situ measurements to define key global N2O sources. We showed that the marine source is isotopically distinct from soil and freshwater N2O (the continental source). Further, the global average source (sum of all natural and anthropogenic sources) is largely controlled by soils and freshwaters. These findings substantiate past modelling studies that relied on several assumptions about the global N2O cycle. Finally, a two-box-model and a Bayesian isotope mixing model revealed marine and continental N2O sources have relative contributions of 24–26% and 74–76% to the total, respectively. Further, the Bayesian modeling exercise indicated the N2O flux from freshwaters may be much larger than currently thought.
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Affiliation(s)
- David M. Snider
- National Water Research Institute, Canada Centre for Inland Waters, Environment Canada, Burlington, ON, L7R 4A6, Canada
- * E-mail: (DMS); (JJV)
| | - Jason J. Venkiteswaran
- Department of Geography and Environmental Studies, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada
- Department of Earth and Environmental Sciences, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
- * E-mail: (DMS); (JJV)
| | - Sherry L. Schiff
- Department of Earth and Environmental Sciences, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
| | - John Spoelstra
- National Water Research Institute, Canada Centre for Inland Waters, Environment Canada, Burlington, ON, L7R 4A6, Canada
- Department of Earth and Environmental Sciences, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
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