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Georges T, Chèvre R, Cousin SF, Gervais C, Thureau P, Mollica G, Azaïs T. 43Ca MAS-DNP NMR of Frozen Solutions for the Investigation of Calcium Ion Complexation. ACS OMEGA 2024; 9:4881-4891. [PMID: 38313477 PMCID: PMC10831850 DOI: 10.1021/acsomega.3c08292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 12/11/2023] [Accepted: 12/26/2023] [Indexed: 02/06/2024]
Abstract
Calcium ion complexation in aqueous solutions is of paramount importance in biology as it is related to cell signaling, muscle contraction, or biomineralization. However, Ca2+-complexes are dynamic soluble entities challenging to describe at the molecular level. Nuclear magnetic resonance appears as a method of choice to probe Ca2+-complexes. However, 43Ca NMR exhibits severe limitations arising from the low natural abundance coupled to the low gyromagnetic ratio and the quadrupolar nature of 43Ca, which overall make it a very unreceptive nucleus. Here, we show that 43Ca dynamic nuclear polarization (DNP) NMR of 43Ca-labeled frozen solutions is an efficient approach to enhance the NMR receptivity of 43Ca and to obtain structural insights about calcium ions complexed with representative ligands including water molecules, ethylenediaminetetraacetic acid (EDTA), and l-aspartic acid (l-Asp). In these conditions and in combination with numerical simulations and calculations, we show that 43Ca nuclei belonging to Ca2+ complexed to the investigated ligands exhibit rather low quadrupolar couplings (with CQ typically ranging from 0.6 to 1 MHz) due to high symmetrical environments and potential residual dynamics in vitrified solutions at a temperature of 100 K. As a consequence, when 1H→43Ca cross-polarization (CP) is used to observe 43Ca central transition, "high-power" νRF(43Ca) conditions, typically used to detect spin 1/2 nuclei, provide ∼120 times larger sensitivity than "low-power" conditions usually employed for detection of quadrupolar nuclei. These "high-power" CPMAS conditions allow two-dimensional (2D) 1H-43Ca HetCor spectra to be readily recorded, highlighting various Ca2+-ligand interactions in solution. This significant increase in 43Ca NMR sensitivity results from the combination of distinct advantages: (i) an efficient 1H-mediated polarization transfer from DNP, resembling the case of low-natural-abundance spin 1/2 nuclei, (ii) a reduced dynamics, allowing the use of CP as a sensitivity enhancement technique, and (iii) the presence of a relatively highly symmetrical Ca environment, which, combined to residual dynamics, leads to the averaging of the quadrupolar interaction and hence to efficient high-power CP conditions. Interestingly, these results indicate that the use of high-power CP conditions is an effective way of selecting symmetrical and/or dynamic 43Ca environments of calcium-containing frozen solution, capable of filtering out more rigid and/or anisotropic 43Ca sites characterized by larger quadrupolar constants. This approach could open the way to the atomic-level investigation of calcium environments in more complex, heterogeneous frozen solutions, such as those encountered at the early stages of calcium phosphate or calcium carbonate biomineralization events.
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Affiliation(s)
- Tristan Georges
- Sorbonne
Université, CNRS, Laboratoire de Chimie de la Matière
Condensée de Paris (LCMCP), 4 Place Jussieu, 75005 Paris, France
| | - Romain Chèvre
- Aix
Marseille Univ, CNRS, ICR, 13397 Marseille, France
| | | | - Christel Gervais
- Sorbonne
Université, CNRS, Laboratoire de Chimie de la Matière
Condensée de Paris (LCMCP), 4 Place Jussieu, 75005 Paris, France
| | | | | | - Thierry Azaïs
- Sorbonne
Université, CNRS, Laboratoire de Chimie de la Matière
Condensée de Paris (LCMCP), 4 Place Jussieu, 75005 Paris, France
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2
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Cerofolini L, Parigi G, Ravera E, Fragai M, Luchinat C. Solid-state NMR methods for the characterization of bioconjugations and protein-material interactions. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2022; 122:101828. [PMID: 36240720 DOI: 10.1016/j.ssnmr.2022.101828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 08/26/2022] [Accepted: 09/07/2022] [Indexed: 06/16/2023]
Abstract
Protein solid-state NMR has evolved dramatically over the last two decades, with the development of new hardware and sample preparation methodologies. This technique is now ripe for complex applications, among which one can count bioconjugation, protein chemistry and functional biomaterials. In this review, we provide our account on this aspect of protein solid-state NMR.
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Affiliation(s)
- Linda Cerofolini
- Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy
| | - Giacomo Parigi
- Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Magnetic Resonance Center (CERM), Università degli Studi di Firenze, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy
| | - Enrico Ravera
- Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Magnetic Resonance Center (CERM), Università degli Studi di Firenze, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy; Florence Data Science, Università degli Studi di Firenze, Italy.
| | - Marco Fragai
- Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Magnetic Resonance Center (CERM), Università degli Studi di Firenze, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy.
| | - Claudio Luchinat
- Consorzio Interuniversitario Risonanze Magnetiche di Metalloproteine, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Magnetic Resonance Center (CERM), Università degli Studi di Firenze, Via Luigi Sacconi 6, 50019, Sesto Fiorentino, Italy; Department of Chemistry "Ugo Schiff", Università degli Studi di Firenze, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy.
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3
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Molecular conformations and dynamics in the extracellular matrix of mammalian structural tissues: Solid-state NMR spectroscopy approaches. Matrix Biol Plus 2021; 12:100086. [PMID: 34746737 PMCID: PMC8551230 DOI: 10.1016/j.mbplus.2021.100086] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Solid-state NMR spectroscopy probes molecular conformation and dynamics in intact ECM. Collagen conformational dynamics has roles in mechanical properties of fibrils and cell adhesion. Solid-state NMR spectroscopy has shed new light on the chemical structure of bone mineral.
Solid-state NMR spectroscopy has played an important role in multidisciplinary studies of the extracellular matrix. Here we review how solid-state NMR has been used to probe collagen molecular conformations, dynamics, post-translational modifications and non-enzymatic chemical changes, and in calcified tissues, the molecular structure of bone mineral and its interface with collagen. We conclude that NMR spectroscopy can deliver vital information that in combination with data from structural imaging techniques, can result in significant new insight into how the extracellular matrix plays its multiple roles.
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4
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Zeng P, Fu Y, Pang Y, He T, Wu Y, Tang R, Qin A, Kong X. Solid-State Nuclear Magnetic Resonance Identifies Abnormal Calcium Phosphate Formation in Diseased Bones. ACS Biomater Sci Eng 2021; 7:1159-1168. [PMID: 33617226 DOI: 10.1021/acsbiomaterials.0c01559] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The crystallites of calcium phosphate (CaP) in bones consist of hydroxyl apatite (HA) and amorphous calcium phosphate (ACP). These nanoscale structures of CaP are sculptured by biological bone formation and resorption processes and are one of the crucial factors that determine the overall strength of the constructs. We used one- and two-dimensional 1H-31P solid-state nuclear magnetic resonance (SSNMR) to investigate the nanoscopic structural changes of CaP. Two quantitative measurables are deduced based on the heterogeneous linewidth of 31P signal and the ratio of ACP to HA, which characterize the mineral crystallinity and the relative proportion of ACP, respectively. We analyzed bones from different murine models of osteopetrosis and osteoporosis and from human samples with osteoporosis and osteoarthritis. It shows that the ACP content increases notably in osteopetrotic bones that are characterized by defective osteoclastic resorption, whereas the overall crystallinity increases in osteoporotic bones that are marked by overactive osteoclastic resorption. Similar pathological characteristics are observed for the sclerotic bones of late-stage osteoarthritis, as compared to those of the osteopetrotic bones. These findings suggest that osteoclast-related bone diseases not only alter the bone density macroscopically but also lead to abnormal formation of CaP crystallites. The quantitative measurement by SSNMR provides a unique perspective on the pathology of bone diseases at the nanoscopic level.
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Affiliation(s)
- Pingmei Zeng
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Yao Fu
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Yichuan Pang
- Shanghai Key Laboratory of Orthopaedic Implants, Department of Orthopaedics, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, People's Republic of China
| | - Tian He
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Yuanyuan Wu
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - Ruikang Tang
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
| | - An Qin
- Shanghai Key Laboratory of Orthopaedic Implants, Department of Orthopaedics, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200011, People's Republic of China
| | - Xueqian Kong
- Center for Chemistry of High-Performance & Novel Materials, Department of Chemistry, Zhejiang University, Hangzhou 310027, People's Republic of China
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5
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Iline-Vul T, Nanda R, Mateos B, Hazan S, Matlahov I, Perelshtein I, Keinan-Adamsky K, Althoff-Ospelt G, Konrat R, Goobes G. Osteopontin regulates biomimetic calcium phosphate crystallization from disordered mineral layers covering apatite crystallites. Sci Rep 2020; 10:15722. [PMID: 32973201 PMCID: PMC7518277 DOI: 10.1038/s41598-020-72786-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 09/07/2020] [Indexed: 02/06/2023] Open
Abstract
Details of apatite formation and development in bone below the nanometer scale remain enigmatic. Regulation of mineralization was shown to be governed by the activity of non-collagenous proteins with many bone diseases stemming from improper activity of these proteins. Apatite crystal growth inhibition or enhancement is thought to involve direct interaction of these proteins with exposed faces of apatite crystals. However, experimental evidence of the molecular binding events that occur and that allow these proteins to exert their functions are lacking. Moreover, recent high-resolution measurements of apatite crystallites in bone have shown that individual crystallites are covered by a persistent layer of amorphous calcium phosphate. It is therefore unclear whether non-collagenous proteins can interact with the faces of the mineral crystallites directly and what are the consequences of the presence of a disordered mineral layer to their functionality. In this work, the regulatory effect of recombinant osteopontin on biomimetic apatite is shown to produce platelet-shaped apatite crystallites with disordered layers coating them. The protein is also shown to regulate the content and properties of the disordered mineral phase (and sublayers within it). Through solid-state NMR atomic carbon-phosphorous distance measurements, the protein is shown to be located in the disordered phases, reaching out to interact with the surfaces of the crystals only through very few sidechains. These observations suggest that non-phosphorylated osteopontin acts as regulator of the coating mineral layers and exerts its effect on apatite crystal growth processes mostly from afar with a limited number of contact points with the crystal.
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Affiliation(s)
- Taly Iline-Vul
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel
| | - Raju Nanda
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel
| | - Borja Mateos
- Max F. Perutz Laboratories, Department of Computational and Structural Biology, University of Vienna, 1030, Vienna, Austria
| | - Shani Hazan
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel
| | - Irina Matlahov
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel
| | - Ilana Perelshtein
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel
| | | | | | - Robert Konrat
- Max F. Perutz Laboratories, Department of Computational and Structural Biology, University of Vienna, 1030, Vienna, Austria
| | - Gil Goobes
- Department of Chemistry, Bar Ilan University, 5290002, Ramat Gan, Israel.
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6
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Ben Shir I, Kababya S, Zax DB, Schmidt A. Resilient Intracrystalline Occlusions: A Solid-State NMR View of Local Structure as It Tunes Bulk Lattice Properties. J Am Chem Soc 2020; 142:13743-13755. [PMID: 32689791 PMCID: PMC7586327 DOI: 10.1021/jacs.0c03590] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Indexed: 11/30/2022]
Abstract
In many marine organisms, biomineralization-the crystallization of calcium-based ionic lattices-demonstrates how regulated processes optimize for diverse functions, often via incorporation of agents from the precipitation medium. We study a model system consisting of l-aspartic acid (Asp) which when added to the precipitation solution of calcium carbonate crystallizes the thermodynamically disfavored polymorph vaterite. Though vaterite is at best only kinetically stable, that stability is tunable, as vaterite grown with Asp at high concentration is both thermally and temporally stable, while vaterite grown at 10-fold lower Asp concentration, yet 2-fold less in the crystal, spontaneously transforms to calcite. Solid-state NMR shows that Asp is sparsely occluded within vaterite and calcite. CP-REDOR NMR reveals that each Asp is embedded in a perturbed occlusion shell of ∼8 disordered carbonates which bridge to the bulk. In both the as-deposited vaterites and the evolved calcite, the perturbed shell contains two sets of carbonate species distinguished by their proximity to the amine and identifiable based on 13C chemical shifts. The embedding shell and the occluded Asp act as an integral until which minimally rearranges even as the bulk undergoes extensive reorganization. The resilience of these occlusion units suggests that large Asp-free domains drive the vaterite to calcite transformation-which are retarded by the occlusion units, resulting in concentration-dependent lattice stability. Understanding the structure and properties of the occlusion unit, uniquely amenable to ssNMR, thus appears to be a key to explaining other macroscopic properties, such as hardness.
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Affiliation(s)
- Ira Ben Shir
- Schulich
Faculty of Chemistry and Russell Berrie Nanotechnology Institute, Technion—Israel Institute of Technology, Technion City, Haifa 32000, Israel
| | - Shifi Kababya
- Schulich
Faculty of Chemistry and Russell Berrie Nanotechnology Institute, Technion—Israel Institute of Technology, Technion City, Haifa 32000, Israel
| | - David B. Zax
- Department
of Chemistry & Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, United States
| | - Asher Schmidt
- Schulich
Faculty of Chemistry and Russell Berrie Nanotechnology Institute, Technion—Israel Institute of Technology, Technion City, Haifa 32000, Israel
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7
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Chambers MS, Chater PA, Evans IR, Evans JSO. Average and Local Structure of Apatite-Type Germanates and Implications for Oxide Ion Conductivity. Inorg Chem 2019; 58:14853-14862. [PMID: 31617356 PMCID: PMC7007209 DOI: 10.1021/acs.inorgchem.9b02544] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Materials with the
apatite structure have a range of important
applications in which their function is influenced by details of their
local structure. Here, we describe an average and local structural
study to probe the origins of high-temperature oxide ion mobility
in La10(GeO4)6O3 and La8Bi2(GeO4)6O3 oxygen-excess
materials, using the low-conductivity interstitial oxide-free La8Sr2(GeO4)6O2 as
a benchmark. For La10 and La8Bi2,
we locate the interstitial oxygen, Oint, responsible for
conductivity by Rietveld refinement and relate the P63/m to P1̅ phase
transitions on cooling to oxygen ordering. Local structural studies
using neutron total scattering reveal that well-ordered GeO5 square pyramidal groups form in the structure at low temperature,
but that Oint becomes significantly more disordered in
the high-conductivity, high-temperature structures, with a transition
to more trigonal-bipyramid-like average geometry. We relate the higher
conductivity of Bi materials to the presence of several Oint sites of similar energy in the structure, which correlates with
its less-distorted low-temperature average structure. Oxide ion conductors
have a number of important applications.
We have used a combination of average and local structural methods
to understand the origin of conductivity in a range of apatite-derived
oxide ion conductors. We probe the coordination environment of the
key oxide species believed responsible for conductivity, how it distorts
the local coordination geometry of the material, and how this evolves
as the material enters its high conductivity regime on heating. We
relate this insight to the different conductivities of different members
of the family.
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Affiliation(s)
- Matthew S Chambers
- Department of Chemistry , Durham University , South Road , Durham DH1 3LE , United Kingdom.,Diamond Light Source , Diamond House, Harwell Science and Innovation Campus , Didcot OX11 0DE , United Kingdom
| | - Philip A Chater
- Diamond Light Source , Diamond House, Harwell Science and Innovation Campus , Didcot OX11 0DE , United Kingdom
| | | | - John S O Evans
- Department of Chemistry , Durham University , South Road , Durham DH1 3LE , United Kingdom
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8
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Kocman V, Di Mauro GM, Veglia G, Ramamoorthy A. Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2019; 102:36-46. [PMID: 31325686 PMCID: PMC6698407 DOI: 10.1016/j.ssnmr.2019.07.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Revised: 07/10/2019] [Accepted: 07/11/2019] [Indexed: 05/05/2023]
Abstract
NMR spectroscopy is a powerful experimental technique to study biological systems at the atomic resolution. However, its intrinsic low sensitivity results in long acquisition times that in extreme cases lasts for days (or even weeks) often exceeding the lifetime of the sample under investigation. Different paramagnetic agents have been used in an effort to decrease the spin-lattice (T1) relaxation times of the studied nuclei, which are the main cause for long acquisition times necessary for signal averaging to enhance the signal-to-noise ratio of NMR spectra. Consequently, most of the experimental time is "wasted" in waiting for the magnetization to recover between successive scans. In this review, we discuss how to set up an optimal paramagnetic relaxation enhancement (PRE) system to effectively reduce the T1 relaxation times avoiding significant broadening of NMR signals. Additionally, we describe how PRE-agents can be used to provide structural and dynamic information and can even be used to follow the intermediates of chemical reactions and to speed-up data acquisition. We also describe the unique challenges and benefits associated with the application of PRE to solid-state NMR spectroscopy, explaining how the use of PREs is more complex for membrane mimetic systems as PREs can also be exploited to change the alignment of oriented membrane systems. Functionalization of membrane mimetics, such as bicelles, can provide a controlled region of paramagnetic effect that has the potential, together with the desired alignment, to provide crucial biologically relevant structural information. And finally, we discuss how paramagnetic metals can be utilized to further increase the dynamic nuclear polarization (DNP) effects and how to preserve the enhancements when dissolution DNP is implemented.
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Affiliation(s)
- Vojč Kocman
- Department of Chemistry, University of Michigan, Ann Arbor, MI, USA; Biophysics, Biomedical Engineering, Macromolecular Science and Engineering, University of Michigan, Ann Arbor, MI, USA
| | | | - Gianluigi Veglia
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA
| | - Ayyalusamy Ramamoorthy
- Department of Chemistry, University of Michigan, Ann Arbor, MI, USA; Biophysics, Biomedical Engineering, Macromolecular Science and Engineering, University of Michigan, Ann Arbor, MI, USA.
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9
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Von Euw S, Wang Y, Laurent G, Drouet C, Babonneau F, Nassif N, Azaïs T. Bone mineral: new insights into its chemical composition. Sci Rep 2019; 9:8456. [PMID: 31186433 PMCID: PMC6560110 DOI: 10.1038/s41598-019-44620-6] [Citation(s) in RCA: 103] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2018] [Accepted: 04/27/2019] [Indexed: 01/02/2023] Open
Abstract
Some compositional and structural features of mature bone mineral particles remain unclear. They have been described as calcium-deficient and hydroxyl-deficient carbonated hydroxyapatite particles in which a fraction of the PO43- lattice sites are occupied by HPO42- ions. The time has come to revise this description since it has now been proven that the surface of mature bone mineral particles is not in the form of hydroxyapatite but rather in the form of hydrated amorphous calcium phosphate. Using a combination of dedicated solid-state nuclear magnetic resonance techniques, the hydrogen-bearing species present in bone mineral and especially the HPO42- ions were closely scrutinized. We show that these HPO42- ions are concentrated at the surface of bone mineral particles in the so-called amorphous surface layer whose thickness was estimated here to be about 0.8 nm for a 4-nm thick particle. We also show that their molar proportion is much higher than previously estimated since they stand for about half of the overall amount of inorganic phosphate ions that compose bone mineral. As such, the mineral-mineral and mineral-biomolecule interfaces in bone tissue must be driven by metastable hydrated amorphous environments rich in HPO42- ions rather than by stable crystalline environments of hydroxyapatite structure.
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Affiliation(s)
- Stanislas Von Euw
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France.,Trinity College Dublin, Trinity Centre for Bioengineering (TCBE), Trinity Biomedical Sciences Institute, 152-160 Pearse Street, Dublin 2, Ireland
| | - Yan Wang
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France
| | - Guillaume Laurent
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France
| | - Christophe Drouet
- CIRIMAT, Université de Toulouse, CNRS, INP-Ensiacet, 4 allée Emile Monso, F-31030, Toulouse, France
| | - Florence Babonneau
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France
| | - Nadine Nassif
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France
| | - Thierry Azaïs
- Sorbonne Université, CNRS, Collège de France, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4, place Jussieu, F-75005, Paris, France.
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10
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Holmes ST, Wang WD, Hou G, Dybowski C, Wang W, Bai S. A new NMR crystallographic approach to reveal the calcium local structure of atorvastatin calcium. Phys Chem Chem Phys 2019; 21:6319-6326. [DOI: 10.1039/c8cp07673a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
We combine experimental and computational determination of 43Ca solid-state NMR parameters (chemical shift tensors, quadrupolar coupling tensors, and Euler angles) to constrain the structure of the local calcium–ligand coordination environment.
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Affiliation(s)
- Sean T. Holmes
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark
- Delaware
- USA
| | - Wei D. Wang
- State Key Laboratory of Applied Organic Chemistry
- Lanzhou
- China
| | - Guangjin Hou
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark
- Delaware
- USA
| | - Cecil Dybowski
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark
- Delaware
- USA
| | - Wei Wang
- State Key Laboratory of Applied Organic Chemistry
- Lanzhou
- China
| | - Shi Bai
- Department of Chemistry and Biochemistry
- University of Delaware
- Newark
- Delaware
- USA
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11
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Chen S, Lucier BEG, Chen M, Terskikh VV, Huang Y. Probing Calcium-Based Metal-Organic Frameworks via Natural Abundance 43 Ca Solid-State NMR Spectroscopy. Chemistry 2018; 24:8732-8736. [PMID: 29770988 DOI: 10.1002/chem.201802164] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Indexed: 12/11/2022]
Abstract
Calcium-based metal-organic frameworks (MOFs) are of high importance due to their low cost and bio-compatible metal centers. Understanding the local environment of calcium in these materials is critical for unraveling the origins of specific MOF properties. 43 Ca solid-state NMR spectroscopy is one of the very few techniques that can directly characterize calcium metal centers, however, the 43 Ca nucleus is a very challenging target for solid-state NMR spectroscopy due to its extremely low natural abundance and resonant frequency. In this work, natural abundance 43 Ca solid-state NMR spectroscopy, at a high magnetic field of 21.1 T, has been employed to characterize several calcium-based MOFs. We demonstrate that 43 Ca NMR spectra and quantum chemical calculations can probe the local structure of calcium metal centers within MOFs, investigate the presence of guests, and monitor phase changes.
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Affiliation(s)
- Shoushun Chen
- Department of Chemistry, University of Western Ontario, London, Ontario, N6A 5B7, Canada
| | - Bryan E G Lucier
- Department of Chemistry, University of Western Ontario, London, Ontario, N6A 5B7, Canada
| | - Mansheng Chen
- Key Laboratory of Functional Organometallic Materials, College of Chemistry and Materials Science, Hengyang Normal University, Hengyang, Hunan, 421008, China
| | - Victor V Terskikh
- Department of Chemistry, University of Ottawa, Ottawa, Ontario, K1N 6N5, Canada
| | - Yining Huang
- Department of Chemistry, University of Western Ontario, London, Ontario, N6A 5B7, Canada
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12
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Tsai BNF, Tsao C, Huang SJ, Chang CK, Chan JCC. Preparation and Structural Characterization of Free-Standing Octacalcium-Phosphate-Rich Thin Films. J Phys Chem B 2018; 122:2082-2089. [DOI: 10.1021/acs.jpcb.7b11977] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
| | | | | | - Chung-Kai Chang
- National Synchrotron Radiation Research Center, Hsinchu 30076, Taiwan
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13
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Gałęzowska J. Interactions between Clinically Used Bisphosphonates and Bone Mineral: from Coordination Chemistry to Biomedical Applications and Beyond. ChemMedChem 2018; 13:289-302. [DOI: 10.1002/cmdc.201700769] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2017] [Revised: 01/09/2018] [Indexed: 01/02/2023]
Affiliation(s)
- Joanna Gałęzowska
- Department of Inorganic Chemistry; Wrocław Medical University; Borowska 211A 50-556 Wrocław Poland
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14
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Quinn CM, Wang M, Polenova T. NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology. Methods Mol Biol 2018; 1688:1-35. [PMID: 29151202 PMCID: PMC6217836 DOI: 10.1007/978-1-4939-7386-6_1] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
Abstract
As a result of profound gains in sensitivity and resolution afforded by ultrahigh magnetic fields, transformative applications in the fields of structural biology and materials science are being realized. The development of dual low temperature superconducting (LTS)/high-temperature superconducting (HTS) magnets has enabled the achievement of magnetic fields above 1 GHz (23.5 T), which will open doors to an unprecedented new range of applications. In this contribution, we discuss the promise of ultrahigh field magnetic resonance. We highlight several methodological developments pertinent at high-magnetic fields including measurement of 1H-1H distances and 1H chemical shift anisotropy in the solid state as well as studies of quadrupolar nuclei such as 17O. Higher magnetic fields have advanced heteronuclear detection in solution NMR, valuable for applications including metabolomics and disordered proteins, as well as expanded use of proton detection in the solid state in conjunction with ultrafast magic angle spinning. We also present several recent applications to structural studies of the AP205 bacteriophage, the M2 channel from Influenza A, and biomaterials such as human bone. Gains in sensitivity and resolution from increased field strengths will enable advanced applications of NMR spectroscopy including in vivo studies of whole cells and intact virions.
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Affiliation(s)
- Caitlin M Quinn
- Department of Chemistry and Biochemistry, University of Delaware, 036 Brown Laboratories, Newark, DE, 19716, USA
- Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, 1051 Biomedical Science Tower 3, 3501 Fifth Ave, Pittsburgh, PA, 15261, USA
| | - Mingzhang Wang
- Department of Chemistry and Biochemistry, University of Delaware, 036 Brown Laboratories, Newark, DE, 19716, USA
- Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, 1051 Biomedical Science Tower 3, 3501 Fifth Ave, Pittsburgh, PA, 15261, USA
| | - Tatyana Polenova
- Department of Chemistry and Biochemistry, University of Delaware, 036 Brown Laboratories, Newark, DE, 19716, USA.
- Pittsburgh Center for HIV Protein Interactions, University of Pittsburgh School of Medicine, 1051 Biomedical Science Tower 3, 3501 Fifth Ave, Pittsburgh, PA, 15261, USA.
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15
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Andreev AS, Bulina NV, Chaikina MV, Prosanov IY, Terskikh VV, Lapina OB. Solid-state NMR and computational insights into the crystal structure of silicocarnotite-based bioceramic materials synthesized mechanochemically. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2017; 84:151-157. [PMID: 28258809 DOI: 10.1016/j.ssnmr.2017.02.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2016] [Revised: 01/15/2017] [Accepted: 02/14/2017] [Indexed: 06/06/2023]
Abstract
In this work, we report the results of a detailed structural study of a promising bioceramic material silicocarnotite Ca5(PO4)2SiO4 (SC) synthesized from mechanochemically treated nanosized silicon-substituted hydroxyapatite by annealing at 1000°C. This novel synthetic approach represents an attractive and efficient route towards large-scale manufacturing of the silicocarnotite-based bioceramics. A combination of solid-state nuclear magnetic resonance (NMR), powder X-ray crystallography and density function theory (DFT) calculations has been implemented to characterize the phase composition of the prepared composite materials and to gain insight into the crystal structure of silicocarnotite. The phase composition analysis based on the multinuclear solid-state NMR has been found in agreement with X-ray powder diffraction indicating the minority phases of CaO (5-6wt%) and residual silicon-apatite (7-8wt%), while the rest of the material being a fairly crystalline silicocarnotite phase (86-88wt%). A combination of computational (CASTEP) and experimental methods was used to address the anionic site disorder in the silicocarnotite crystal structure. Distorted [OPO3] pyramids have appeared as an important structural motif in the SC crystal structure. The ratio between regular [PO4] and distorted [OPO3] tetrahedra is found between 2:1 and 3:1 based on XRD experiments and CASTEP calculations. The natural abundance 43Ca magic angle spinning NMR spectra of silicocarnotite are reported for the first time.
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Affiliation(s)
- A S Andreev
- Boreskov Institute of Catalysis SB RAS, pr. Lavrentieva 5, 630090 Novosibirsk, Russian Federation; Novosibirsk State University, Pirogova st. 2, 630090 Novosibirsk, Russian Federation.
| | - N V Bulina
- Institute of Solid State Chemistry and Mechanochemistry SB RAS, Kutateladze st. 18, 630128 Novosibirsk, Russian Federation
| | - M V Chaikina
- Institute of Solid State Chemistry and Mechanochemistry SB RAS, Kutateladze st. 18, 630128 Novosibirsk, Russian Federation
| | - I Yu Prosanov
- Institute of Solid State Chemistry and Mechanochemistry SB RAS, Kutateladze st. 18, 630128 Novosibirsk, Russian Federation
| | - V V Terskikh
- Department of Chemistry, University of Ottawa, Ottawa, ON, Canada K1N 6N5
| | - O B Lapina
- Boreskov Institute of Catalysis SB RAS, pr. Lavrentieva 5, 630090 Novosibirsk, Russian Federation; Novosibirsk State University, Pirogova st. 2, 630090 Novosibirsk, Russian Federation
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16
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Kanehashi K. Structural roles of calcium in alkaline and alkaline-earth aluminosilicate glasses by solid-state 43Ca, 17O and 27Al NMR. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2017; 84:158-163. [PMID: 28283343 DOI: 10.1016/j.ssnmr.2017.03.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Revised: 01/30/2017] [Accepted: 03/02/2017] [Indexed: 06/06/2023]
Abstract
Structural roles of Ca in aluminosilicate glasses have been investigated by solid-state 43Ca, 17O, and 27Al NMR spectroscopy. In 15Al2O3-55SiO2-15CaO-15RO (R=Mg, Ca, Sr, and Na2) (mol%) glass systems wherein half of the alkaline plus alkaline-earth cations charge-compensate (AlO4)‒ tetrahedra and the other half modify the glass network, with decreasing cation field strength (CFS) in the order of Mg2+>Ca2+>Sr2+>Na+, the isotropic chemical shift (δiso) of 43Ca moves to a higher frequency and the quadrupolar coupling constant (PQ) of 43Ca decreases. The change in the δiso of 43Ca is more sensitive to the role of Ca than that in the PQ of 43Ca. The two possible roles (network modifier and charge compensator) of Ca in the glass with R=Ca are not distinguished in the 43Ca 3QMAS and 5QMAS spectra. The 17O 3QMAS results demonstrate that the cation with higher CFS (e.g., Mg2+ in the R=Mg glass and Ca2+ in the R=Na2 glass) dominantly creates non-bridging oxygen, even though there is slight cation mixing. With increasing CFS in the glass, the PQ of both 43Ca and 27Al also increases, indicating that the cation with higher CFS tends to degrade the structural symmetry.
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Affiliation(s)
- Koji Kanehashi
- Nippon Steel & Sumitomo Metal Corporation, 20-1 Shintomi, Futtsu, Chiba 293-8511, Japan
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17
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Moran RF, Dawson DM, Ashbrook SE. Exploiting NMR spectroscopy for the study of disorder in solids. INT REV PHYS CHEM 2017. [DOI: 10.1080/0144235x.2017.1256604] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Robert F. Moran
- School of Chemistry, EaStCHEM and St Andrews Centre of Magnetic Resonance, University of St Andrews, North Haugh, St Andrews KY16 9ST, UK
| | - Daniel M. Dawson
- School of Chemistry, EaStCHEM and St Andrews Centre of Magnetic Resonance, University of St Andrews, North Haugh, St Andrews KY16 9ST, UK
| | - Sharon E. Ashbrook
- School of Chemistry, EaStCHEM and St Andrews Centre of Magnetic Resonance, University of St Andrews, North Haugh, St Andrews KY16 9ST, UK
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18
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Interfacial Ca 2+ environments in nanocrystalline apatites revealed by dynamic nuclear polarization enhanced 43Ca NMR spectroscopy. Nat Commun 2017; 8:14104. [PMID: 28128197 PMCID: PMC5290151 DOI: 10.1038/ncomms14104] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 11/30/2016] [Indexed: 01/13/2023] Open
Abstract
The interfaces within bones, teeth and other hybrid biomaterials are of paramount importance but remain particularly difficult to characterize at the molecular level because both sensitive and selective techniques are mandatory. Here, it is demonstrated that unprecedented insights into calcium environments, for example the differentiation of surface and core species of hydroxyapatite nanoparticles, can be obtained using solid-state NMR, when combined with dynamic nuclear polarization. Although calcium represents an ideal NMR target here (and de facto for a large variety of calcium-derived materials), its stable NMR-active isotope, calcium-43, is a highly unreceptive probe. Using the sensitivity gains from dynamic nuclear polarization, not only could calcium-43 NMR spectra be obtained easily, but natural isotopic abundance 2D correlation experiments could be recorded for calcium-43 in short experimental time. This opens perspectives for the detailed study of interfaces in nanostructured materials of the highest biological interest as well as calcium-based nanosystems in general.
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19
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Kruk J, Doskocz M, Jodłowska E, Zacharzewska A, Łakomiec J, Czaja K, Kujawski J. NMR Techniques in Metabolomic Studies: A Quick Overview on Examples of Utilization. APPLIED MAGNETIC RESONANCE 2017; 48:1-21. [PMID: 28111499 PMCID: PMC5222922 DOI: 10.1007/s00723-016-0846-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 10/10/2016] [Indexed: 05/08/2023]
Abstract
Metabolomics is a rapidly developing branch of science that concentrates on identifying biologically active molecules with potential biomarker properties. To define the best biomarkers for diseases, metabolomics uses both models (in vitro, animals) and human, as well as, various techniques such as mass spectroscopy, gas chromatography, liquid chromatography, infrared and UV-VIS spectroscopy and nuclear magnetic resonance. The last one takes advantage of the magnetic properties of certain nuclei, such as 1H, 13C, 31P, 19F, especially their ability to absorb and emit energy, what is crucial for analyzing samples. Among many spectroscopic NMR techniques not only one-dimensional (1D) techniques are known, but for many years two-dimensional (2D, for example, COSY, DOSY, JRES, HETCORE, HMQS), three-dimensional (3D, DART-MS, HRMAS, HSQC, HMBC) and solid-state NMR have been used. In this paper, authors taking apart fundamental division of nuclear magnetic resonance techniques intend to shown their wide application in metabolomic studies, especially in identifying biomarkers.
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Affiliation(s)
- Joanna Kruk
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
| | - Marek Doskocz
- RootInnovation Sp. z o.o., Jana Matejki 11 Str., 50-333 Wrocław, Poland
| | - Elżbieta Jodłowska
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
| | - Anna Zacharzewska
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
| | - Joanna Łakomiec
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
| | - Kornelia Czaja
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
| | - Jacek Kujawski
- Department of Organic Chemistry, Faculty of Pharmacy, Poznan University of Medical Sciences, Grunwaldzka 6 Str., 60-780 Poznan, Poland
- Foundation for Development of Science and Business on Medical and Exact Sciences Area, Legnicka 65 Str., 54-206 Wrocław, Poland
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20
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Zhang R, Chen Y, Rodriguez-Hornedo N, Ramamoorthy A. Enhancing NMR Sensitivity of Natural-Abundance Low-γ Nuclei by Ultrafast Magic-Angle-Spinning Solid-State NMR Spectroscopy. Chemphyschem 2016; 17:2962-2966. [PMID: 27310287 PMCID: PMC5831690 DOI: 10.1002/cphc.201600637] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Indexed: 12/18/2022]
Abstract
Although magic-angle-spinning (MAS) solid-state NMR spectroscopy has been able to provide piercing atomic-level insights into the structure and dynamics of various solids, the poor sensitivity has limited its widespread application, especially when the sample amount is limited. Herein, we demonstrate the feasibility of acquiring high S/N ratio natural-abundance 13 C NMR spectrum of a small amount of sample (≈2.0 mg) by using multiple-contact cross polarization (MCP) under ultrafast MAS. As shown by our data from pharmaceutical compounds, the signal enhancement achieved depends on the number of CP contacts employed within a single scan, which depends on the T1ρ of protons. The use of MCP for fast 2D 1 H/13 C heteronuclear correlation experiments is also demonstrated. The significant signal enhancement can be greatly beneficial for the atomic-resolution characterization of many types of crystalline solids including polymorphic drugs and nanomaterials.
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Affiliation(s)
- Rongchun Zhang
- Biophysics and Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Yitian Chen
- Department of Pharmaceutical Science, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Nair Rodriguez-Hornedo
- Department of Pharmaceutical Science, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Ayyalusamy Ramamoorthy
- Biophysics and Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA.
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21
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Du YP, Chang HH, Yang SY, Huang SJ, Tsai YJ, Huang JJT, Chan JCC. Study of Binding Interaction between Pif80 Protein Fragment and Aragonite. Sci Rep 2016; 6:30883. [PMID: 27484975 PMCID: PMC4971512 DOI: 10.1038/srep30883] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 07/11/2016] [Indexed: 11/08/2022] Open
Abstract
Pif is a crucial protein for the formation of the nacreous layer in Pinctada fucata. Three non-acidic peptide fragments of the aragonite-binding domain (Pif80) are selected, which contain multiple copies of the repeat sequence DDRK, to study the interaction between non-acidic peptides and aragonite. The polypeptides DDRKDDRKGGK (Pif80-11) and DDRKDDRKGGKDDRKDDRKGGK (Pif80-22) have similar binding affinity to aragonite. Solid-state NMR data indicate that the backbones of Pif80-11 and Pif80-22 peptides bound on aragonite adopt a random-coil conformation. Pif80-11 is a lot more effective than Pif80-22 in promoting the nucleation of aragonite on the substrate of β-chitin. Our results suggest that the structural arrangement at a protein-mineral interface depends on the surface structure of the mineral substrate and the protein sequence. The side chains of the basic residues, which function as anchors to the aragonite surface, have uniform structures. The role of basic residues as anchors in protein-mineral interaction may play an important role in biomineralization.
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Affiliation(s)
- Yuan-Peng Du
- Department of Chemistry, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
| | - Hsun-Hui Chang
- Department of Chemistry, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
| | - Sheng-Yu Yang
- Department of Chemistry, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
| | - Shing-Jong Huang
- Instrumentation Center, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
| | - Yu-Ju Tsai
- Institute of Chemistry, Academia Sinica, No. 128, Sec. 2, Academia Road, Nankang, Taipei 115, Taiwan
| | - Joseph Jen-Tse Huang
- Institute of Chemistry, Academia Sinica, No. 128, Sec. 2, Academia Road, Nankang, Taipei 115, Taiwan
| | - Jerry Chun Chung Chan
- Department of Chemistry, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
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22
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Mroue KH, Xu J, Zhu P, Morris MD, Ramamoorthy A. Selective detection and complete identification of triglycerides in cortical bone by high-resolution (1)H MAS NMR spectroscopy. Phys Chem Chem Phys 2016; 18:18687-91. [PMID: 27374353 DOI: 10.1039/c6cp03506j] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Using (1)H-based magic angle spinning solid-state NMR spectroscopy, we report an atomistic-level characterization of triglycerides in compact cortical bone. By suppressing contributions from immobile molecules present in bone, we show that a (1)H-based constant-time uniform-sign cross-peak (CTUC) two-dimensional COSY-type experiment that correlates the chemical shifts of protons can selectively detect a mobile triglyceride layer as the main component of small lipid droplets embedded on the surface of collagen fibrils. High sensitivity and resolution afforded by this NMR approach could be potentially utilized to investigate the origin of triglycerides and their pathological roles associated with bone fractures, diseases, and aging.
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Affiliation(s)
- Kamal H Mroue
- Biophysics Program, University of Michigan, Ann Arbor, MI 48109, USA.
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23
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Aliev AE, Courtier-Murias D. Water scaffolding in collagen: Implications on protein dynamics as revealed by solid-state NMR. Biopolymers 2016; 101:246-56. [PMID: 23784805 DOI: 10.1002/bip.22330] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Revised: 06/05/2013] [Accepted: 06/12/2013] [Indexed: 02/05/2023]
Abstract
Solid-state NMR studies of collagen samples of various origins confirm that the amplitude of collagen backbone and sidechain motions increases significantly on increasing the water content. This conclusion is supported by the changes observed in three different NMR observables: (i) the linewidth dependence on the 1H decoupling frequency; (ii) 13C CSA changes for the peptide carbonyl groups, and (iii) dephasing rates of 1H-13C dipolar couplings. In particular, a nearly threefold increase in motional amplitudes of the backbone librations about C-Cα or N-Cα bonds was found on increasing the added water content up to 47 wt%D2 O. On the basis of the frequencies of NMR observables involved, the timescale of the protein motions dependent on the added water content is estimated to be of the order of microseconds. This estimate agrees with that from wideline T2(1)H NMR measurements. Also, our wideline 1H NMR measurements revealed that the timescale of the microsecond motions in proteins reduces significantly on increasing the added water content, i.e., an ∼15-fold increase in protein motional frequencies is observed on increasing the added water content to 45 wt% D2 O. The observed changes in collagen dynamics is attributed to the increase in water translational diffusion on increasing the amount of added water, which leads to more frequent "bound water/free water" exchange on the protein surface, accompanied by the breakage and formation of new hydrogen bonds with polar functionalities of protein.
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Affiliation(s)
- Abil E Aliev
- Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, UK
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24
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Singh C, Rai RK, Kayastha AM, Sinha N. Ultra fast magic angle spinning solid - state NMR spectroscopy of intact bone. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2016; 54:132-135. [PMID: 26352739 DOI: 10.1002/mrc.4331] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 08/03/2015] [Accepted: 08/10/2015] [Indexed: 06/05/2023]
Abstract
Ultra fast magic angle spinning (MAS) has been a potent method to significantly average out homogeneous/inhomogeneous line broadening in solid-state nuclear magnetic resonance (ssNMR) spectroscopy. It has given a new direction to ssNMR spectroscopy with its different applications. We present here the first and foremost application of ultra fast MAS (~60 kHz) for ssNMR spectroscopy of intact bone. This methodology helps to comprehend and elucidate the organic content in the intact bone matrix with resolution and sensitivity enhancement. At this MAS speed, amino protons from organic part of intact bone start to appear in (1) H NMR spectra. The experimental protocol of ultra-high speed MAS for intact bone has been entailed with an additional insight achieved at 60 kHz.
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Affiliation(s)
- Chandan Singh
- Centre of Biomedical Research, SGPGIMS Campus, Raebarelly Road, Lucknow, UP, 226014, India
- School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Ratan Kumar Rai
- Centre of Biomedical Research, SGPGIMS Campus, Raebarelly Road, Lucknow, UP, 226014, India
| | - Arvind M Kayastha
- School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi, 221005, India
| | - Neeraj Sinha
- Centre of Biomedical Research, SGPGIMS Campus, Raebarelly Road, Lucknow, UP, 226014, India
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25
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Lenton S, Nylander T, Holt C, Sawyer L, Härtlein M, Müller H, Teixeira SCM. Structural studies of hydrated samples of amorphous calcium phosphate and phosphoprotein nanoclusters. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2016; 45:405-12. [PMID: 26780236 DOI: 10.1007/s00249-015-1109-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2015] [Revised: 11/25/2015] [Accepted: 12/17/2015] [Indexed: 11/28/2022]
Abstract
There are abundant examples of nanoclusters and inorganic microcrystals in biology. Their study under physiologically relevant conditions remains challenging due to their heterogeneity, instability, and the requirements of sample preparation. Advantages of using neutron diffraction and contrast matching to characterize biomaterials are highlighted in this article. We have applied these and complementary techniques to search for nanocrystals within clusters of calcium phosphate sequestered by bovine phosphopeptides, derived from osteopontin or casein. The neutron diffraction patterns show broad features that could be consistent with hexagonal hydroxyapatite crystallites smaller than 18.9 Å. Such nanocrystallites are, however, undetected by the complementary X-ray and FTIR data, collected on the same samples. The absence of a distinct diffraction pattern from the nanoclusters supports the generally accepted amorphous calcium phosphate structure of the mineral core.
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Affiliation(s)
- Samuel Lenton
- EPSAM, Keele University, Staffordshire, ST5 5BG, UK.,Institut Laue-Langevin, 71 Avenue des Martyrs, 38042, Grenoble Cedex 9, France.,School of Physics and Astronomy, Astbury Center for Structural Molecular Biology, University of Leeds, LS2 9JT, Leeds, UK
| | - Tommy Nylander
- Division of Physical Chemistry, Department of Chemistry, Lund University, 124, Lund, S221 00, Sweden
| | - Carl Holt
- Institute of Molecular, Cell, and Systems Biology, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Lindsay Sawyer
- Structural Biochemistry Group, University of Edinburgh, Roger Land Building, The King's Buildings, Mayfield Road, EH9 3JR, Edinburgh, UK
| | - Michael Härtlein
- Institut Laue-Langevin, 71 Avenue des Martyrs, 38042, Grenoble Cedex 9, France
| | - Harrald Müller
- European Synchrotron Radiation Facility, CS 40220, 38043, Grenoble, France
| | - Susana C M Teixeira
- EPSAM, Keele University, Staffordshire, ST5 5BG, UK. .,Institut Laue-Langevin, 71 Avenue des Martyrs, 38042, Grenoble Cedex 9, France.
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26
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Mroue KH, Nishiyama Y, Kumar Pandey M, Gong B, McNerny E, Kohn DH, Morris MD, Ramamoorthy A. Proton-Detected Solid-State NMR Spectroscopy of Bone with Ultrafast Magic Angle Spinning. Sci Rep 2015; 5:11991. [PMID: 26153138 PMCID: PMC4495383 DOI: 10.1038/srep11991] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Accepted: 05/05/2015] [Indexed: 01/26/2023] Open
Abstract
While obtaining high-resolution structural details from bone is highly important to better understand its mechanical strength and the effects of aging and disease on bone ultrastructure, it has been a major challenge to do so with existing biophysical techniques. Though solid-state NMR spectroscopy has the potential to reveal the structural details of bone, it suffers from poor spectral resolution and sensitivity. Nonetheless, recent developments in magic angle spinning (MAS) NMR technology have made it possible to spin solid samples up to 110 kHz frequency. With such remarkable capabilities, (1)H-detected NMR experiments that have traditionally been challenging on rigid solids can now be implemented. Here, we report the first application of multidimensional (1)H-detected NMR measurements on bone under ultrafast MAS conditions to provide atomistic-level elucidation of the complex heterogeneous structure of bone. Our investigations demonstrate that two-dimensional (1)H/(1)H chemical shift correlation spectra for bone are obtainable using fp-RFDR (finite-pulse radio-frequency-driven dipolar recoupling) pulse sequence under ultrafast MAS. Our results infer that water exhibits distinct (1)H-(1)H dipolar coupling networks with the backbone and side-chain regions in collagen. These results show the promising potential of proton-detected ultrafast MAS NMR for monitoring structural and dynamic changes caused by mechanical loading and disease in bone.
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Affiliation(s)
- Kamal H. Mroue
- Department of Biophysics, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
| | - Yusuke Nishiyama
- JEOL RESONANCE Inc., Musashino, Akishima, Tokyo 196-8558, Japan
- RIKEN CLST-JEOL Collaboration Center, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Manoj Kumar Pandey
- RIKEN CLST-JEOL Collaboration Center, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
| | - Bo Gong
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
| | - Erin McNerny
- School of Dentistry, University of Michigan, Ann Arbor, Michigan, 48109-1078, United States
| | - David H. Kohn
- School of Dentistry, University of Michigan, Ann Arbor, Michigan, 48109-1078, United States
| | - Michael D. Morris
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
| | - Ayyalusamy Ramamoorthy
- Department of Biophysics, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan, 48109-1055, United States
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Zhang R, Pandey MK, Nishiyama Y, Ramamoorthy A. A Novel High-Resolution and Sensitivity-Enhanced Three-Dimensional Solid-State NMR Experiment Under Ultrafast Magic Angle Spinning Conditions. Sci Rep 2015; 5:11810. [PMID: 26138791 PMCID: PMC4490345 DOI: 10.1038/srep11810] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2015] [Accepted: 05/19/2015] [Indexed: 12/22/2022] Open
Abstract
Although magic angle spinning (MAS) solid-state NMR is a powerful technique to obtain atomic-resolution insights into the structure and dynamics of a variety of chemical and biological solids, poor sensitivity has severely limited its applications. In this study, we demonstrate an approach that suitably combines proton-detection, ultrafast-MAS and multiple frequency dimensions to overcome this limitation. With the utilization of proton-proton dipolar recoupling and double quantum (DQ) coherence excitation/reconversion radio-frequency pulses, very high-resolution proton-based 3D NMR spectra that correlate single-quantum (SQ), DQ and SQ coherences of biological solids have been obtained successfully for the first time. The proposed technique requires a very small amount of sample and does not need multiple radio-frequency (RF) channels. It also reveals information about the proximity between a spin and a certain other dipolar-coupled pair of spins in addition to regular SQ/DQ and SQ/SQ correlations. Although 1H spectral resolution is still limited for densely proton-coupled systems, the 3D technique is valuable to study dilute proton systems, such as zeolites, small molecules, or deuterated samples. We also believe that this new methodology will aid in the design of a plethora of multidimensional NMR techniques and enable high-throughput investigation of an exciting class of solids at atomic-level resolution.
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Affiliation(s)
- Rongchun Zhang
- Biophysics and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA
| | - Manoj Kumar Pandey
- RIKEN CLST-JEOL collaboration center, RIKEN, Yokohama, Kanagawa 230-0045, Japan
| | - Yusuke Nishiyama
- 1] RIKEN CLST-JEOL collaboration center, RIKEN, Yokohama, Kanagawa 230-0045, Japan [2] JEOL RESONANCE Inc., Musashino, Akishima, Tokyo 196-8558, Japan
| | - Ayyalusamy Ramamoorthy
- Biophysics and Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055, USA
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Zhang R, Ramamoorthy A. Dynamics-based selective 2D (1)H/(1)H chemical shift correlation spectroscopy under ultrafast MAS conditions. J Chem Phys 2015; 142:204201. [PMID: 26026440 PMCID: PMC4449354 DOI: 10.1063/1.4921381] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Accepted: 05/08/2015] [Indexed: 01/30/2023] Open
Abstract
Dynamics plays important roles in determining the physical, chemical, and functional properties of a variety of chemical and biological materials. However, a material (such as a polymer) generally has mobile and rigid regions in order to have high strength and toughness at the same time. Therefore, it is difficult to measure the role of mobile phase without being affected by the rigid components. Herein, we propose a highly sensitive solid-state NMR approach that utilizes a dipolar-coupling based filter (composed of 12 equally spaced 90° RF pulses) to selectively measure the correlation of (1)H chemical shifts from the mobile regions of a material. It is interesting to find that the rotor-synchronized dipolar filter strength decreases with increasing inter-pulse delay between the 90° pulses, whereas the dipolar filter strength increases with increasing inter-pulse delay under static conditions. In this study, we also demonstrate the unique advantages of proton-detection under ultrafast magic-angle-spinning conditions to enhance the spectral resolution and sensitivity for studies on small molecules as well as multi-phase polymers. Our results further demonstrate the use of finite-pulse radio-frequency driven recoupling pulse sequence to efficiently recouple weak proton-proton dipolar couplings in the dynamic regions of a molecule and to facilitate the fast acquisition of (1)H/(1)H correlation spectrum compared to the traditional 2D NOESY (Nuclear Overhauser effect spectroscopy) experiment. We believe that the proposed approach is beneficial to study mobile components in multi-phase systems, such as block copolymers, polymer blends, nanocomposites, heterogeneous amyloid mixture of oligomers and fibers, and other materials.
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Affiliation(s)
- Rongchun Zhang
- Biophysics and Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, USA
| | - Ayyalusamy Ramamoorthy
- Biophysics and Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055, USA
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29
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Jain NS, Dürr UH, Ramamoorthy A. Bioanalytical methods for metabolomic profiling: Detection of head and neck cancer, including oral cancer. CHINESE CHEM LETT 2015. [DOI: 10.1016/j.cclet.2015.03.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Chen J, Yu Z, Zhu P, Wang J, Gan Z, Wei J, Zhao Y, Wei S. Effects of fluorine on the structure of fluorohydroxyapatite: a study by XRD, solid-state NMR and Raman spectroscopy. J Mater Chem B 2015; 3:34-38. [DOI: 10.1039/c4tb01561d] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An atomic snapshot of fluorohydroxyapatites with different fluorine contents by solid state NMR.
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Affiliation(s)
- Jinshuai Chen
- School of Chemistry and Chemical Engineering
- Yangzhou University
- P.R. China
- Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses
- Yangzhou
| | - Zhiwu Yu
- High Magnetic Field Laboratory
- Hefei Institutes of Physical Science
- Chinese Academy of Sciences
- Hefei 230031
- P.R. China
| | - Peizhi Zhu
- School of Chemistry and Chemical Engineering
- Yangzhou University
- P.R. China
- Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses
- Yangzhou
| | - Junfeng Wang
- High Magnetic Field Laboratory
- Hefei Institutes of Physical Science
- Chinese Academy of Sciences
- Hefei 230031
- P.R. China
| | - Zhehong Gan
- Center of Interdisciplinary Magnetic Resonance
- National High Magnetic Field Laboratory
- Tallahassee
- USA
| | - Jie Wei
- Key Laboratory for Ultrafine Materials of Ministry of Education
- East China University of Science and Technology
- Shanghai
- P.R. China
| | - Yinghui Zhao
- Department of Oral and Maxillofacial Surgery
- Laboratory of Interdisciplinary Studies
- School and Hospital of Stomatology
- Peking University
- Beijing 100081
| | - Shicheng Wei
- Department of Oral and Maxillofacial Surgery
- Laboratory of Interdisciplinary Studies
- School and Hospital of Stomatology
- Peking University
- Beijing 100081
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31
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Rai RK, Singh C, Sinha N. Predominant role of water in native collagen assembly inside the bone matrix. J Phys Chem B 2014; 119:201-11. [PMID: 25530228 DOI: 10.1021/jp511288g] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Bone is one of the most intriguing biomaterials found in nature consisting of bundles of collagen helixes, hydroxyapatite, and water, forming an exceptionally tough, yet lightweight material. We present here an experimental tool to map water-dependent subtle changes in triple helical assembly of collagen protein in its absolute native environment. Collagen being the most abundant animal protein has been subject of several structural studies in last few decades, mostly on an extracted, overexpressed, and synthesized form of collagen protein. Our method is based on a (1)H detected solid-state nuclear magnetic resonance (ssNMR) experiment performed on native collagen protein inside intact bone matrix. Recent development in (1)H homonuclear decoupling sequences has made it possible to observe specific atomic resolution in a large complex system. The method consists of observing a natural-abundance two-dimensional (2D) (1)H/(13)C heteronuclear correlation (HETCOR) and(1)H double quantum-single quantum (DQ-SQ) correlation ssNMR experiment. The 2D NMR experiment maps three-dimensional assembly of native collagen protein and shows that extracted form of collagen protein is significantly different from protein in the native state. The method also captures native collagen subtle changes (of the order of ∼1.0 Å) due to dehydration and H/D exchange, giving an experimental tool to map small changes. The method has the potential to be of wide applicability to other collagen containing biomaterials.
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Affiliation(s)
- Ratan Kumar Rai
- Centre of Biomedical Research , SGPGIMS Campus, Raibarelly Road, Lucknow 226014, India
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32
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Mroue KH, Zhang R, Zhu P, McNerny E, Kohn DH, Morris MD, Ramamoorthy A. Acceleration of natural-abundance solid-state MAS NMR measurements on bone by paramagnetic relaxation from gadolinium-DTPA. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 244:90-7. [PMID: 24881032 PMCID: PMC4094129 DOI: 10.1016/j.jmr.2014.04.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2014] [Revised: 03/27/2014] [Accepted: 04/27/2014] [Indexed: 05/05/2023]
Abstract
Reducing the data collection time without affecting the signal intensity and spectral resolution is one of the major challenges for the widespread application of multidimensional nuclear magnetic resonance (NMR) spectroscopy, especially in experiments conducted on complex heterogeneous biological systems such as bone. In most of these experiments, the NMR data collection time is ultimately governed by the proton spin-lattice relaxation times (T1). For over two decades, gadolinium(III)-DTPA (Gd-DTPA, DTPA=Diethylene triamine pentaacetic acid) has been one of the most widely used contrast-enhancement agents in magnetic resonance imaging (MRI). In this study, we demonstrate that Gd-DTPA can also be effectively used to enhance the longitudinal relaxation rates of protons in solid-state NMR experiments conducted on bone without significant line-broadening and chemical-shift-perturbation side effects. Using bovine cortical bone samples incubated in different concentrations of Gd-DTPA complex, the (1)H T1 values were calculated from data collected by (1)H spin-inversion recovery method detected in natural-abundance (13)C cross-polarization magic angle spinning (CPMAS) NMR experiments. Our results reveal that the (1)H T1 values can be successfully reduced by a factor of 3.5 using as low as 10mM Gd-DTPA without reducing the spectral resolution and thus enabling faster data acquisition of the (13)C CPMAS spectra. These results obtained from (13)C-detected CPMAS experiments were further confirmed using (1)H-detected ultrafast MAS experiments on Gd-DTPA doped bone samples. This approach considerably improves the signal-to-noise ratio per unit time of NMR experiments applied to bone samples by reducing the experimental time required to acquire the same number of scans.
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Affiliation(s)
- Kamal H Mroue
- Biophysics, The University of Michigan, Ann Arbor, MI 48109-1055, United States; Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Rongchun Zhang
- Biophysics, The University of Michigan, Ann Arbor, MI 48109-1055, United States; Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States; School of Physics, Nankai University, Tianjin 300071, PR China
| | - Peizhi Zhu
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Erin McNerny
- School of Dentistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - David H Kohn
- School of Dentistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Michael D Morris
- Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States
| | - Ayyalusamy Ramamoorthy
- Biophysics, The University of Michigan, Ann Arbor, MI 48109-1055, United States; Department of Chemistry, The University of Michigan, Ann Arbor, MI 48109-1055, United States.
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Bonhomme C, Gervais C, Laurencin D. Recent NMR developments applied to organic-inorganic materials. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2014; 77:1-48. [PMID: 24411829 DOI: 10.1016/j.pnmrs.2013.10.001] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 10/17/2013] [Indexed: 06/03/2023]
Abstract
In this contribution, the latest developments in solid state NMR are presented in the field of organic-inorganic (O/I) materials (or hybrid materials). Such materials involve mineral and organic (including polymeric and biological) components, and can exhibit complex O/I interfaces. Hybrids are currently a major topic of research in nanoscience, and solid state NMR is obviously a pertinent spectroscopic tool of investigation. Its versatility allows the detailed description of the structure and texture of such complex materials. The article is divided in two main parts: in the first one, recent NMR methodological/instrumental developments are presented in connection with hybrid materials. In the second part, an exhaustive overview of the major classes of O/I materials and their NMR characterization is presented.
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Affiliation(s)
- Christian Bonhomme
- Laboratoire de Chimie de la Matière Condensée de Paris, UMR CNRS 7574, Université Pierre et Marie Curie, Paris 06, Collège de France, 11 Place Marcelin Berthelot, 75231 Paris Cedex 05, France.
| | - Christel Gervais
- Laboratoire de Chimie de la Matière Condensée de Paris, UMR CNRS 7574, Université Pierre et Marie Curie, Paris 06, Collège de France, 11 Place Marcelin Berthelot, 75231 Paris Cedex 05, France
| | - Danielle Laurencin
- Institut Charles Gerhardt de Montpellier, UMR5253, CNRS UM2 UM1 ENSCM, CC1701, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France
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34
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Taylor AJ, Rendina E, Smith BJ, Zhou DH. Analyses of mineral specific surface area and hydroxyl substitution for intact bone. Chem Phys Lett 2013; 588. [PMID: 24347673 DOI: 10.1016/j.cplett.2013.09.061] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Bone minerals possess two primary hydrogen sources: hydroxide ions in the nanocrystalline core and structural water in the amorphous surface layer. In order to accurately measure their concentrations using hydrogen to phosphorus cross polarization NMR spectroscopy, it is necessary to analyze the dependence of signal intensities on serial contact times, namely, cross polarization kinetics. A reliable protocol is developed to iteratively decompose the severely overlapped spectra and to analyze the cross-polarization kinetics, leading to measurement of hydroxyl and structural water concentrations. Structural water concentration is used to estimate mineral specific surface area and nanocrystal thickness for intact bone.
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Affiliation(s)
- Amanda J Taylor
- Department of Physics, Oklahoma State University, Stillwater, OK, USA 74078
| | - Elizabeth Rendina
- Department of Nutritional Sciences, Oklahoma State University, Stillwater, OK, USA 74078
| | - Brenda J Smith
- Department of Nutritional Sciences, Oklahoma State University, Stillwater, OK, USA 74078
| | - Donghua H Zhou
- Department of Physics, Oklahoma State University, Stillwater, OK, USA 74078
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35
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McElderry JDP, Zhu P, Mroue KH, Xu J, Pavan B, Fang M, Zhao G, McNerny E, Kohn DH, Franceschi RT, Holl MMB, Tecklenburg MM, Ramamoorthy A, Morris MD. Crystallinity and compositional changes in carbonated apatites: Evidence from 31P solid-state NMR, Raman, and AFM analysis. J SOLID STATE CHEM 2013; 206:10.1016/j.jssc.2013.08.011. [PMID: 24273344 PMCID: PMC3835554 DOI: 10.1016/j.jssc.2013.08.011] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Solid-state (magic-angle spinning) NMR spectroscopy is a useful tool for obtaining structural information on bone organic and mineral components and synthetic model minerals at the atomic-level. Raman and 31P NMR spectral parameters were investigated in a series of synthetic B-type carbonated apatites (CAps). Inverse 31P NMR linewidth and inverse Raman PO43- ν1 bandwidth were both correlated with powder XRD c-axis crystallinity over the 0.3-10.3 wt% CO32- range investigated. Comparison with bone powder crystallinities showed agreement with values predicted by NMR and Raman calibration curves. Carbonate content was divided into two domains by the 31P NMR chemical shift frequency and the Raman phosphate ν1 band position. These parameters remain stable except for an abrupt transition at 6.5 wt% carbonate, a composition which corresponds to an average of one carbonate per unit cell. This near-binary distribution of spectroscopic properties was also found in AFM-measured particle sizes and Ca/P molar ratios by elemental analysis. We propose that this transition differentiates between two charge-balancing ion-loss mechanisms as measured by Ca/P ratios. These results define a criterion for spectroscopic characterization of B-type carbonate substitution in apatitic minerals.
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Affiliation(s)
| | - Peizhi Zhu
- Department of Chemistry and University of Michigan, Ann Arbor, MI 48109-1055
| | - Kamal H. Mroue
- Department of Chemistry and University of Michigan, Ann Arbor, MI 48109-1055
- Department of Chemistry and Biophysics, University of Michigan, Ann Arbor, MI 48109-1055
| | - Jiadi Xu
- Department of Chemistry and Biophysics, University of Michigan, Ann Arbor, MI 48109-1055
| | - Barbara Pavan
- Department of Chemistry and Science of Advanced Materials Program, Central Michigan University, Mt. Pleasant, MI, USA
| | - Ming Fang
- Department of Chemistry and University of Michigan, Ann Arbor, MI 48109-1055
| | - Guisheng Zhao
- Department of Chemistry School of Dentistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - Erin McNerny
- Department of Chemistry School of Dentistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - David H. Kohn
- Department of Chemistry School of Dentistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - Renny T. Franceschi
- Department of Chemistry School of Dentistry, University of Michigan, Ann Arbor, MI 48109-1055
| | | | - Mary M.J. Tecklenburg
- Department of Chemistry and Science of Advanced Materials Program, Central Michigan University, Mt. Pleasant, MI, USA
| | - Ayyalusamy Ramamoorthy
- Department of Chemistry and University of Michigan, Ann Arbor, MI 48109-1055
- Department of Chemistry and Biophysics, University of Michigan, Ann Arbor, MI 48109-1055
| | - Michael D. Morris
- Department of Chemistry and University of Michigan, Ann Arbor, MI 48109-1055
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36
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Singh C, Rai RK, Sinha N. Experimental aspect of solid-state nuclear magnetic resonance studies of biomaterials such as bones. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2013; 54:18-25. [PMID: 23731548 DOI: 10.1016/j.ssnmr.2013.05.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Revised: 04/11/2013] [Accepted: 05/10/2013] [Indexed: 05/11/2023]
Abstract
Solid-state nuclear magnetic resonance (SSNMR) spectroscopy is increasingly becoming a popular technique to probe micro-structural details of biomaterial such as bone with pico-meter resolution. Due to high-resolution structural details probed by SSNMR methods, handling of bone samples and experimental protocol are very crucial aspects of study. We present here first report of the effect of various experimental protocols and handling methods of bone samples on measured SSNMR parameters. Various popular SSNMR experiments were performed on intact cortical bone sample collected from fresh animal, immediately after removal from animal systems, and results were compared with bone samples preserved in different conditions. We find that the best experimental conditions for SSNMR parameters of bones correspond to preservation at -20 °C and in 70% ethanol solution. Various other SSNMR parameters were compared corresponding to different experimental conditions. Our study has helped in finding best experimental protocol for SSNMR studies of bone. This study will be of further help in the application of SSNMR studies on large bone disease related animal model systems for statistically significant results.
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Affiliation(s)
- Chandan Singh
- School of Biotechnology, Faculty of Science, Banaras Hindu University, Varanasi 221005, India
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37
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Laurencin D, Smith ME. Development of (43)Ca solid state NMR spectroscopy as a probe of local structure in inorganic and molecular materials. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2013; 68:1-40. [PMID: 23398971 DOI: 10.1016/j.pnmrs.2012.05.001] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2012] [Accepted: 05/10/2012] [Indexed: 06/01/2023]
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38
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Huang YC, Mou Y, Tsai TWT, Wu YJ, Lee HK, Huang SJ, Chan JCC. Calcium-43 NMR studies of polymorphic transition of calcite to aragonite. J Phys Chem B 2012; 116:14295-301. [PMID: 23163540 DOI: 10.1021/jp309923p] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Phase transformation between calcite and aragonite is an important issue in biomineralization. To shed more light on the mechanism of this process at the molecular level, we employ solid-state (43)Ca NMR to study the phase transformation from calcite to aragonite as regulated by magnesium ions, with (43)Ca enrichment at a level of 6%. Using the gas diffusion approach, the phase of Mg-calcite is formed initially and the system subsequently transforms to aragonite as the reaction time proceeds. Our (43)Ca solid-state NMR data support the dissolution-recrystallization mechanism for the calcite to aragonite transition. We find that the (43)Ca NMR parameters of Mg-calcite are very similar to those of pure calcite. Under the high-resolution condition provided by magic-angle spinning at 4 kHz, we can monitor the variation of the (43)Ca NMR parameters of the aragonite signals for the samples obtained at different reaction times. Our data suggest that in the presence of a significant amount of Mg(2+) ions, aragonite is the most stable polymorph of calcium carbonate. The initial precipitated crystallites of aragonite have spine-like morphology, for which the (43)Ca spin-lattice relaxation data indicate that the ions in the lattice have considerable motional dynamics. As the crystallinity of aragonite improves further, the (43)Ca T(1) parameter of the aragonite phase changes considerably and becomes very similar to that obtained for pure aragonite. For the first time, the difference in crystal morphologies and crystallinity of the aragonite phase has been traced down to the subtle difference in the motional dynamics at the molecular level.
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Affiliation(s)
- Yu-Chieh Huang
- Department of Chemistry, National Taiwan University, No. 1, Section 4, Roosevelt Road, Taipei 106, Taiwan
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Mroue KH, MacKinnon N, Xu J, Zhu P, McNerny E, Kohn DH, Morris MD, Ramamoorthy A. High-resolution structural insights into bone: a solid-state NMR relaxation study utilizing paramagnetic doping. J Phys Chem B 2012; 116:11656-61. [PMID: 22953757 PMCID: PMC3460063 DOI: 10.1021/jp307935g] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The hierarchical heterogeneous architecture of bone imposes significant challenges to structural and dynamic studies conducted by traditional biophysical techniques. High-resolution solid-state nuclear magnetic resonance (SSNMR) spectroscopy is capable of providing detailed atomic-level structural insights into such traditionally challenging materials. However, the relatively long data-collection time necessary to achieve a reliable signal-to-noise ratio (S/N) remains a major limitation for the widespread application of SSNMR on bone and related biomaterials. In this study, we attempt to overcome this limitation by employing the paramagnetic relaxation properties of copper(II) ions to shorten the (1)H intrinsic spin-lattice (T(1)) relaxation times measured in natural-abundance (13)C cross-polarization (CP) magic-angle-spinning (MAS) NMR experiments on bone tissues for the purpose of accelerating the data acquisition time in SSNMR. To this end, high-resolution solid-state (13)C CPMAS experiments were conducted on type I collagen (bovine tendon), bovine cortical bone, and demineralized bovine cortical bone, each in powdered form, to measure the (1)H T(1) values in the absence and in the presence of 30 mM Cu(II)(NH(4))(2)EDTA. Our results show that the (1)H T(1) values were successfully reduced by a factor of 2.2, 2.9, and 3.2 for bovine cortical bone, type I collagen, and demineralized bone, respectively, without reducing the spectral resolution and thus enabling faster data acquisition. In addition, paramagnetic quenching of particular (13)C NMR resonances on exposure to Cu(2+) ions in the absence of mineral was also observed, potentially suggesting the relative proximity of three main amino acids in the protein backbone (glycine, proline, and alanine) to the bone mineral surface.
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Affiliation(s)
- Kamal H. Mroue
- Biophysics, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Neil MacKinnon
- Biophysics, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Jiadi Xu
- Biophysics, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Peizhi Zhu
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Erin McNerny
- School of Dentistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - David H. Kohn
- School of Dentistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Michael D. Morris
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
| | - Ayyalusamy Ramamoorthy
- Biophysics, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
- Department of Chemistry, The University of Michigan, Ann Arbor, Michigan, 48109-1055, USA
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40
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Pavan B, Ceresoli D, Tecklenburg MMJ, Fornari M. First principles NMR study of fluorapatite under pressure. SOLID STATE NUCLEAR MAGNETIC RESONANCE 2012; 45-46:59-65. [PMID: 22770669 PMCID: PMC3435879 DOI: 10.1016/j.ssnmr.2012.06.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2012] [Revised: 06/12/2012] [Accepted: 06/14/2012] [Indexed: 06/01/2023]
Abstract
NMR is the technique of election to probe the local properties of materials. Herein we present the results of density functional theory (DFT) ab initio calculations of the NMR parameters for fluorapatite (FAp), a calcium orthophosphate mineral belonging to the apatite family, by using the GIPAW method (Pickard and Mauri, 2001). Understanding the local effects of pressure on apatites is particularly relevant because of their important role in many solid state and biomedical applications. Apatites are open structures, which can undergo complex anisotropic deformations, and the response of NMR can elucidate the microscopic changes induced by an applied pressure. The computed NMR parameters proved to be in good agreement with the available experimental data. The structural evaluation of the material behavior under hydrostatic pressure (from -5 to +100 kbar) indicated a shrinkage of the diameter of the apatitic channel, and a strong correlation between NMR shielding and pressure, proving the sensitivity of this technique to even small changes in the chemical environment around the nuclei. This theoretical approach allows the exploration of all the different nuclei composing the material, thus providing a very useful guidance in the interpretation of experimental results, particularly valuable for the more challenging nuclei such as (43)Ca and (17)O.
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Affiliation(s)
- Barbara Pavan
- Science of Advanced Materials, Central Michigan University, Mt. Pleasant, MI 48859, USA.
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Kourkoumelis N, Balatsoukas I, Tzaphlidou M. Ca/P concentration ratio at different sites of normal and osteoporotic rabbit bones evaluated by Auger and energy dispersive X-ray spectroscopy. J Biol Phys 2011; 38:279-91. [PMID: 23449289 DOI: 10.1007/s10867-011-9247-3] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Accepted: 10/25/2011] [Indexed: 11/24/2022] Open
Abstract
Osteoporosis is a systemic skeletal disorder associated with reduced bone mineral density and the consequent high risk of bone fractures. Current practice relates osteoporosis largely with absolute mass loss. The assessment of variations in chemical composition in terms of the main elements comprising the bone mineral and its effect on the bone's quality is usually neglected. In this study, we evaluate the ratio of the main elements of bone mineral, calcium (Ca), and phosphorus (P), as a suitable in vitro biomarker for induced osteoporosis. The Ca/P concentration ratio was measured at different sites of normal and osteoporotic rabbit bones using two spectroscopic techniques: Auger electron spectroscopy (AES) and energy-dispersive X-ray spectroscopy (EDX). Results showed that there is no significant difference between samples from different genders or among cortical bone sites. On the contrary, we found that the Ca/P ratio of trabecular bone sections is comparable to cortical sections with induced osteoporosis. Ca/P ratio values are positively related to induced bone loss; furthermore, a different degree of correlation between Ca and P in cortical and trabecular bone is evident. This study also discusses the applicability of AES and EDX to the semiquantitative measurements of bone mineral's main elements along with the critical experimental parameters.
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Affiliation(s)
- Nikolaos Kourkoumelis
- Department of Medical Physics, Medical School, University of Ioannina, Ioannina, 45110 Greece
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Xu J, Zhu P, Morris MD, Ramamoorthy A. Solid-state NMR spectroscopy provides atomic-level insights into the dehydration of cartilage. J Phys Chem B 2011; 115:9948-54. [PMID: 21786810 PMCID: PMC3158280 DOI: 10.1021/jp205663z] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
An atomic-level insight into the functioning of articular cartilage would be useful to develop prevention strategies and therapies for joint diseases such as osteoarthritis. However, the composition and structure of cartilage and their relationship to its unique mechanical properties are quite complex and pose tremendous challenges to most biophysical techniques. In this study, we present an investigation of the structure and dynamics of polymeric molecules of articular cartilage using time-resolved solid-state NMR spectroscopy during dehydration. Full-thickness cartilage explants were used in magic-angle spinning experiments to monitor the structural changes of rigid and mobile carbons. Our results reveal that the dehydration reduced the mobility of collagen amino acid residues and carbon sugar ring structures in glycosaminoglycans but had no effect on the trans-Xaa-Pro conformation. Equally interestingly, our results demonstrate that the dehydration effects are reversible, and the molecular structure and mobility are restored upon rehydration.
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Affiliation(s)
- Jiadi Xu
- Department of Biophysics University of Michigan, Ann Arbor, MI 48109-1055
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - Peizhi Zhu
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - Michael D. Morris
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055
| | - Ayyalusamy Ramamoorthy
- Department of Biophysics University of Michigan, Ann Arbor, MI 48109-1055
- Department of Chemistry, University of Michigan, Ann Arbor, MI 48109-1055
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