Constraining the atmospheric N2O budget from intramolecular site preference in N2O isotopomers

Nitrifying niche in estuaries is expanded by the plastisphere

The estuarine plastisphere, a novel ecological habitat in the Anthropocene, has garnered global concerns. Recent geochemical evidence has pointed out its potential role in influencing nitrogen biogeochemistry. However, the biogeochemical significance of the plastisphere and its mechanisms regulating nitrogen cycling remain elusive. Using 15N- and 13C-labelling coupled with metagenomics and metatranscriptomics, here we unveil that the plastisphere likely acts as an underappreciated nitrifying niche in estuarine ecosystems, exhibiting a 0.9 ~ 12-fold higher activity of bacteria-mediated nitrification compared to surrounding seawater and other biofilms (stone, wood and glass biofilms). The shift of active nitrifiers from O2-sensitive nitrifiers in the seawater to nitrifiers with versatile metabolisms in the plastisphere, combined with the potential interspecific cooperation of nitrifying substrate exchange observed among the plastisphere nitrifiers, collectively results in the unique nitrifying niche. Our findings highlight the plastisphere as an emerging nitrifying niche in estuarine environment, and deepen the mechanistic understanding of its contribution to marine biogeochemistry.

Widespread detoxifying NO reductases impart a distinct isotopic fingerprint on N2O under anoxia

Nitrous oxide (N2O), a potent greenhouse gas, can be generated by multiple biological and abiotic processes in diverse contexts. Accurately tracking the dominant sources of N2O has the potential to improve our understanding of N2O fluxes from soils as well as inform the diagnosis of human infections. Isotopic "Site Preference" (SP) values have been used toward this end, as bacterial and fungal nitric oxide reductases (NORs) produce N2O with different isotopic fingerprints, spanning a large range. Here, we show that flavohemoglobin (Fhp), a hitherto biogeochemically neglected yet widely distributed detoxifying bacterial NO reductase, imparts a distinct SP value onto N2O under anoxic conditions (~+10‰) that correlates with typical environmental N2O SP measurements. Using Pseudomonas aeruginosa as a model organism, we generated strains that only contained Fhp or the dissimilatory NOR, finding that in vivo N2O SP values imparted by these enzymes differ by over 10‰. Depending on the cellular physiological state, the ratio of Fhp:NOR varies significantly in wild-type cells and controls the net N2O SP biosignature: When cells grow anaerobically under denitrifying conditions, NOR dominates; when cells experience rapid, increased nitric oxide concentrations under anoxic conditions but are not growing, Fhp dominates. Other bacteria that only make Fhp generate similar N2O SP biosignatures to those measured from our P. aeruginosa Fhp-only strain. Fhp homologs in sequenced bacterial genomes currently exceed NOR homologs by nearly a factor of four. Accordingly, we suggest a different framework to guide the attribution of N2O biological sources in nature and disease.

Long-neglected contribution of nitrification to N2O emissions in the Yellow River

Rivers play a significant role in the global nitrous oxide (N2O) budget. However, the microbial sources and sinks of N2O in river systems are not well understood or quantified, resulting in the prolonged neglect of nitrification. This study investigated the isotopic signatures of N2O, thereby quantifying the microbial source of N2O production and the degree of N2O reduction in the Yellow River. Although denitrification has long been considered to be the dominant pathway of N2O production in rivers, our findings indicated that denitrification only accounted for 18.3% (8.2%-43.0%) of the total contribution to N2O production in the Yellow River, with 50.2%-80.2% being concurrently reduced. The denitrification contribution to N2O production (R2 = 0.44, p < 0.01) and N2O reduction degree (R2 = 0.70, p < 0.01) were positively related to the dissolved organic carbon (DOC) content. Similar to urban rivers and eutrophic lakes, denitrification was the primary process responsible for N2O production (43.0%) in certain reaches with high organic content (DOC = 5.29 mg/L). Nevertheless, the denitrification activity was generally constrained by the availability of electron donors (average DOC = 2.51 mg/L) throughout the Yellow River basin. Consequently, nitrification emerged as the primary contributor in the well-oxygenated Yellow River. Additionally, our findings further distinguished the respective contribution of ammonia-oxidizing bacteria (AOB) and archaea (AOA) to N2O emissions. Although AOB dominated the N2O production in the Yellow River, the AOA specie abundance (AOA/(AOA + AOB)) contributed up to 32.6%, which resulted in 25.6% of the total nitrifier-produced N2O, suggesting a significant occurrence of AOA in the oligotrophic Yellow River. Overall, this study provided a non-invasive approach for quantifying the microbial sources and sinks to N2O emissions, and demonstrated the substantial role of nitrification in the large oligotrophic rivers.

Pyisotopomer: A Python package for obtaining intramolecular isotope ratio differences from mass spectrometric analysis of nitrous oxide isotopocules

RATIONALE

Obtaining nitrous oxide isotopocule measurements with isotope ratio mass spectrometry (IRMS) involves analyzing the ion current ratios of the nitrous oxide parent ion (N₂ O⁺ ) as well as those of the NO⁺ fragment ion. The data analysis requires correcting for "scrambling" in the ion source, whereby the NO⁺ fragment ion obtains the outer N atom from the N₂ O molecule. While descriptions exist for this correction, and interlaboratory intercalibration efforts have been made, there has yet to be published a package of code for implementing isotopomer calibrations.

METHODS

We developed a user-friendly Python package (pyisotopomer) to determine two coefficients (γ and κ) that describe scrambling in the IRMS ion source, and then used this calibration to obtain intramolecular isotope deltas in N₂ O samples.

RESULTS

With two appropriate reference materials, γ and κ can be determined robustly and accurately for a given IRMS system. An additional third reference material is needed to define the zero-point of the delta scale. We show that IRMS scrambling behavior can vary with time, necessitating regular calibrations. Finally, we present an intercalibration between two IRMS laboratories, using pyisotopomer to calculate γ and κ, and to obtain intramolecular N₂ O isotope deltas in lake water unknowns.

CONCLUSIONS

Given these considerations, we discuss how to use pyisotopomer to obtain high-quality N₂ O isotopocule data from IRMS systems, including the use of appropriate reference materials and frequency of calibration.

Establishing the accuracy of position-specific carbon isotope analysis of propane by GC-pyrolysis-GC-IRMS

RATIONALE

Position-specific (PS) δ¹³ C values of propane have proven their ability to provide valuable information on the evolution history of natural gases. Two major approaches to measure PS δ¹³ C values of propane are isotopic ¹³ C nuclear magnetic resonance (NMR) and gas chromatography-pyrolysis-gas chromatography-isotope ratio mass spectrometry (GC-Py-GC-IRMS). Measurement accuracy of the isotopic ¹³ C NMR has been verified, but the requirements of large sample size and long experimental time limit its applications. GC-Py-GC-IRMS is a more versatile method with a small sample size, but its accuracy has not been demonstrated.

METHODS

We measured the PS δ¹³ C values of propane from nine natural gases using both ¹³ C NMR and GC-Py-GC-IRMS, then evaluated the accuracy of the GC-Py-GC-IRMS method.

RESULTS

The results show that large carbon isotope fractionations occurred for both terminal and central carbons within propane during pyrolysis. The isotope fractionations during the pyrolysis are reproducible at optimum conditions, but vary between the two GC-Py-GC-IRMS systems tested, affected by experimental conditions (e.g., pyrolysis temperature, flow rate, and reactor conditions).

CONCLUSIONS

It is necessary to evaluate and calibrate each GC-Py-GC-IRMS system using propane gases with accurately determined PS δ¹³ C values. This study also highlights a need for PS isotope standards for propane and other molecules (e.g., butane and acetic acid).

Dissolved N2O concentrations in oil palm plantation drainage in a peat swamp of Malaysia

Oil palm plantations in Southeast Asia are the largest supplier of palm oil products and have been rapidly expanding in the last three decades even in peat-swamp areas. Oil palm plantations on peat ecosystems have a unique water management system that lowers the water table and, thus, may yield indirect N₂O emissions from the peat drainage system. We conducted two seasons of spatial monitoring for the dissolved N₂O concentrations in the drainage and adjacent rivers of palm oil plantations on peat swamps in Sarawak, Malaysia, to evaluate the magnitude of indirect N₂O emissions from this ecosystem. In both the dry and wet seasons, the mean and median dissolved N₂O concentrations exhibited over-saturation in the drainage water, i.e., the oil palm plantation drainage may be a source of N₂O to the atmosphere. In the wet season, the spatial distribution of dissolved N₂O showed bimodal peaks in both the unsaturated and over-saturated concentrations. The bulk δ¹⁵N of dissolved N₂O was higher than the source of inorganic N in the oil palm plantation (i.e., N fertilizer and soil organic nitrogen) during both seasons. An isotopocule analysis of the dissolved N₂O suggested that denitrification was a major source of N₂O, followed by N₂O reduction processes that occurred in the drainage water. The δ¹⁵N and site preference mapping analysis in dissolved N₂O revealed that a significant proportion of the N₂O produced in peat and drainage is reduced to N₂ before being released into the atmosphere.

Chronic high-dose silver nanoparticle exposure stimulates N2O emissions by constructing anaerobic micro-environment

Silver nanoparticles (Ag-NPs) were found to be responsible for nitrous oxide (N₂O) generation; however, the mechanism of Ag-NP induced N₂O production remains controversial and needs to be elucidated. In this study, chronic Ag-NP exposure experiments were conducted in five independent sequencing batch biofilm reactors to systematically assess the effects of Ag-NPs on N₂O emission. The results indicated that a low dose of Ag-NPs (< 1 mg/L) slightly suppressed N₂O generation by less than 22.99% compared with the no-Ag-NP control method. In contrast, a high dose (5 mg/L) of Ag-NPs stimulated N₂O emission by 67.54%. ICP-MS and SEM-EDS together revealed that high Ag-NP content accumulated on the biofilm surface when exposed to 5 mg/L Ag-NPs. N₂O and DO microelectrodes, as well as N₂O isotopic composition analyses, further demonstrated that the accumulated Ag-NPs construct the anaerobic zone in the biofilm, which is the primary factor for the stimulation of the nitrite reduction pathway to release N₂O. A metagenomic analysis further attributed the higher N₂O emissions under exposure to a high dose of Ag-NPs to the higher relative abundance of narB and nirK genes (i.e. 1.52- and 1.29-fold higher, respectively). These findings collectively suggest that chronic exposure to high doses of Ag-NPs could enhance N₂O emissions by forming anaerobic micro-environments in biofilms.

Mechanism of biochar on nitrification and denitrification to N2O emissions based on isotope characteristic values

To clarify the mechanism of biochar on nitrification and denitrification to N₂O emissions in farmland soil, the effects of combined application of biochar and different nitrogen sources on the contributions of nitrification and denitrification to N₂O emissions were studied using isotope characteristic values. The results showed that the soil N₂O emissions from ammonium nitrogen fertilizer treatments were significantly higher than that from nitrate nitrogen fertilizer treatments. The biochar combined with ammonium nitrogen fertilizer reduced soil N₂O emissions by 31.0%-30.8%, and biochar combined with nitrate nitrogen fertilizer reduced soil N₂O emissions by 70.6%-63.0%. The isotope model showed that the application of ammonium nitrogen fertilizer was more favorable for soil nitrification in the early stage of the experiment (0-2 d), and more favorable for denitrification in the middle and later stages of the experiment (3-17 d). Application of nitrate nitrogen fertilizer enhanced the nitrification of soil nitrifying bacteria in the early and middle stages of the experiment (0-8 d), and the denitrification of soil denitrifying bacteria in the later stage of the experiment (9-17 d). The effects of biochar on N₂O emissions were mainly in the middle and later stages of the experiment by promoting the nitrification of nitrifying bacteria and inhibiting denitrification of denitrifying bacteria, so as to reduce N₂O emission in soil. These results may help to understand the mitigation mechanism of biochar on N₂O emission in upland soil.

Estuarine plastisphere as an overlooked source of N2O production

“Plastisphere”, microbial communities colonizing plastic debris, has sparked global concern for marine ecosystems. Microbiome inhabiting this novel human-made niche has been increasingly characterized; however, whether the plastisphere holds crucial roles in biogeochemical cycling remains largely unknown. Here we evaluate the potential of plastisphere in biotic and abiotic denitrification and nitrous oxide (N₂O) production in estuaries. Biofilm formation provides anoxic conditions favoring denitrifiers. Comparing with surrounding bulk water, plastisphere exhibits a higher denitrifying activity and N₂O production, suggesting an overlooked N₂O source. Regardless of plastisphere and bulk water, bacterial and fungal denitrifications are the main regulators for N₂O production instead of chemodenitrification. However, the contributions of bacteria and fungi in the plastisphere are different from those in bulk water, indicating a distinct N₂O production pattern in the plastisphere. These findings pinpoint plastisphere as a N₂O source, and provide insights into roles of the new biotope in biogeochemical cycling in the Anthropocene.

The roles of marine plastisphere in global nitrogen cycling are largely unknown. Here, the authors indicate that the plastisphere could act as a potential source of N2O production, which is mainly regulated by the biotic denitrification

Tracing N2O formation in full-scale wastewater treatment with natural abundance isotopes indicates control by organic substrate and process settings

Nitrous oxide (N₂O) dominates greenhouse gas emissions in wastewater treatment plants (WWTPs). Formation of N₂O occurs during biological nitrogen removal, involves multiple microbial pathways, and is typically very dynamic. Consequently, N₂O mitigation strategies require an improved understanding of nitrogen transformation pathways and their modulating controls. Analyses of the nitrogen (N) and oxygen (O) isotopic composition of N₂O and its substrates at natural abundance have been shown to provide valuable information on formation and reduction pathways in laboratory settings, but have rarely been applied to full-scale WWTPs. Here we show that N-species isotope ratio measurements at natural abundance level, combined with long-term N₂O monitoring, allow identification of the N₂O production pathways in a full-scale plug-flow WWTP (Hofen, Switzerland). Heterotrophic denitrification appears as the main N₂O production pathway under all tested process conditions (0-2 mgO₂/l, high and low loading conditions), while nitrifier denitrification was less important, and more variable. N₂O production by hydroxylamine oxidation was not observed. Fractional N₂O elimination by reduction to dinitrogen (N₂) during anoxic conditions was clearly indicated by a concomitant increase in site preference, δ¹⁸O(N₂O) and δ¹⁵N(N₂O). N₂O reduction increased with decreasing availability of dissolved inorganic N and organic substrates, which represents the link between diurnal N₂O emission dynamics and organic substrate fluctuations. Consequently, dosing ammonium-rich reject water under low-organic-substrate conditions is unfavorable, as it is very likely to cause high net N₂O emissions. Our results demonstrate that monitoring of the N₂O isotopic composition holds a high potential to disentangle N₂O formation mechanisms in engineered systems, such as full-scale WWTP. Our study serves as a starting point for advanced campaigns in the future combining isotopic technologies in WWTP with complementary approaches, such as mathematical modeling of N₂O formation or microbial assays to develop efficient N₂O mitigation strategies.

Distinguishing N2O and N2 ratio and their microbial source in soil fertilized for vegetable production using a stable isotope method

Vegetable production systems with excessive nitrogen fertilizer result in severe N₂O emission. It is pivotal to identify the source of N₂O for reducing N₂O emission, but estimating microbial pathways of N₂O production is very difficult due to the existence of N₂O reduction. A promising tool can address this problem by using δ¹⁸O and δ¹⁵N^SP of N₂O to construct a dual isotopocule plot. For ascertaining the microbial pathways of N₂O production and consumption in soil fertilized for vegetable production, four treatments were set up: urea (U), half urea and half organic fertilizer (UO), organic fertilizer (O) and no fertilizer (NF), and the experiment was carried out continuously for two years. The δ¹⁸O vs. δ¹⁵N^SP plot method indicated that the nitrification/fungal denitrification was a dominant in N₂O emission, and the U treatment was the highest, followed by OU, O and NF in the both years. Among the different treatments, furthermore, the N₂O flux had the same trend, whereas the extent of N₂O reduction showed an opposite trend. Overall, inorganic fertilizer enhances nitrification/fungal denitrification and hinders reduction of N₂O to N₂, resulting in a larger amount of N₂O emission. However, organic fertilizer increases the contribution of denitrification and greatly improves the extent of N₂O reduction, which helps to reduce N₂O emission. Therefore, organic fertilizer is crucial to reducing N₂O emission by enhancing N₂O reduction and should be properly applied in production practice.

Direct Comb Vernier Spectroscopy for Fractional Isotopic Ratio Determinations

Accurate isotopic composition analysis of the greenhouse-gasses emitted in the atmosphere is an important step to mitigate global climate warnings. Optical frequency comb-based spectroscopic techniques have shown ideal performance to accomplish the simultaneous monitoring of the different isotope substituted species of such gases. The capabilities of one such technique, namely, direct comb Vernier spectroscopy, to determine the fractional isotopic ratio composition are discussed. This technique combines interferometric filtering of the comb source in a Fabry-Perot that contains the sample gas, with a high resolution dispersion spectrometer to resolve the spectral content of each interacting frequency inside of the Fabry-Perot. Following this methodology, simultaneous spectra of ro-vibrational transitions of 12C16O2 and 13C16O2 molecules are recorded and analyzed with an accurate fitting procedure. Fractional isotopic ratio 13C/12C at 3% of precision is measured for a sample of CO2 gas, showing the potentialities of the technique for all isotopic-related applications of this important pollutant.

Standardization for 13 C-13 C clumped isotope analysis by the fluorination method

RATIONALE

The ¹³ C-¹³ C isotopologues of C₂ molecules have recently been measured using a fluorination method. The C₂ compound is first fluorinated into hexafluoroethane (C₂ F₆ ), and its ¹³ C-isotopologues are subsequently measured using a conventional isotope ratio mass spectrometer. Here, we present an approach for standardizing the fluorination method on an absolute reference scale by using isotopically enriched C₂ F₆ .

METHODS

We prepared physical mixtures of ¹³ C-¹³ C-labeled ethanol and natural ethanol. The enriched ethanol samples were measured using the recently developed fluorination method. Based on the difference between the calculated and measured ∆¹³ C¹³ C values, we quantified the extent to which isotopologues were scrambled during dehydration, fluorination, and ionization in the ion source.

RESULTS

The measured ∆¹³ C¹³ C value was approximately 20% lower than that expected from the amount of ¹³ C-¹³ C ethanol. The potential scrambling in the ion source was estimated to be 0.5-2%, which is lower than the observed isotopic reordering. Therefore, isotopic reordering may have occurred during either dehydration or fluorination.

CONCLUSIONS

For typical analysis of natural samples, scrambling in the ion source can only change the ∆¹³ C¹³ C value by less than 0.04‰, which is lower than the current analytical precision (±0.07‰). Therefore, the observed isotopic reordering may have occurred during the fluorination of ethene through the scrambling of isotopologues of ethene but not in the ion source of the mass spectrometer or during the dehydration of ethanol, given the small amount of C₁ and C₃₊ molecules. Thus, we obtained the empirical transfer function ∆¹³ C¹³ C_CSC  = λ × ∆¹³ C¹³ C with a λ value of 1.25 ± 0.01 for ethanol/ethene and 1.00 for ethane. Using the empirical transfer function, the developed fluorination method can provide actual differences in ∆ values.

Can N Fertilizer Addition Affect N2O Isotopocule Signatures for Soil N2O Source Partitioning?

Isotopocule signatures of N₂O (δ¹⁵N^bulk, δ¹⁸O and site preference) are useful for discerning soil N₂O source, but sometimes, N fertilizer is needed to ensure that there is enough N₂O flux for accurate isotopocule measurements. However, whether fertilizer affects these measurements is unknown. This study evaluated a gradient of NH₄NO₃ addition on N₂O productions and isotopocule values in two acidic subtropical soils. The results showed that N₂O production rates obviously amplified with increasing NH₄NO₃ (p < 0.01), although a lower N₂O production rate and an increasing extent appeared in forest soil. The δ¹⁵N^bulk of N₂O produced in forest soil was progressively enriched when more NH₄NO₃ was added, while becoming more depleted of agricultural soil. Moreover, the N₂O site preference (SP) values collectively elevated with increasing NH₄NO₃ in both soils, indicating that N₂O contributions changed. The increased N₂O production in agricultural soil was predominantly due to the added NH₄NO₃ via autotrophic nitrification and fungal denitrification (beyond 50%), which significantly increased with added NH₄NO₃, whereas soil organic nitrogen contributed most to N₂O production in forest soil, probably via heterotrophic nitrification. Lacking the characteristic SP of heterotrophic nitrification, its N₂O contribution change cannot be accurately identified yet. Overall, N fertilizer should be applied strictly according to the field application rate or N deposition amount when using isotopocule signatures to estimate soil N₂O processes.

Tracing plant–environment interactions from organismal to planetary scales using stable isotopes: a mini review

Natural isotope variation forms a mosaic of isotopically distinct pools across the biosphere and flows between pools integrate plant ecology with global biogeochemical cycling. Carbon, nitrogen, and water isotopic ratios (among others) can be measured in plant tissues, at root and foliar interfaces, and in adjacent atmospheric, water, and soil environments. Natural abundance isotopes provide ecological insight to complement and enhance biogeochemical research, such as understanding the physiological conditions during photosynthetic assimilation (e.g. water stress) or the contribution of unusual plant water or nutrient sources (e.g. fog, foliar deposition). While foundational concepts and methods have endured through four decades of research, technological improvements that enable measurement at fine spatiotemporal scales, of multiple isotopes, and of isotopomers, are advancing the field of stable isotope ecology. For example, isotope studies now benefit from the maturation of field-portable infrared spectroscopy, which allows the exploration of plant–environment sensitivity at physiological timescales. Isotope ecology is also benefiting from, and contributing to, new understanding of the plant–soil–atmosphere system, such as improving the representation of soil carbon pools and turnover in land surface models. At larger Earth-system scales, a maturing global coverage of isotope data and new data from site networks offer exciting synthesis opportunities to merge the insights of single-or multi-isotope analysis with ecosystem and remote sensing data in a data-driven modeling framework, to create geospatial isotope products essential for studies of global environmental change.

An approach for calibrating laser-based N2 O isotopic analyzers for soil biogeochemistry research

RATIONALE

Technological advances have motivated researchers to transition from traditional gas chromatography/isotope ratio mass spectrometry to rapid, high-throughput, laser-based instrumentation for N₂ O isotopic research. However, calibrating laser-based instruments to yield accurate and precise isotope ratios has been an ongoing challenge. To streamline the N₂ O isotope research pipeline, we developed the calibration protocol for laser-based analyzers described here. While our approach is targeted at laboratory soil incubations, we anticipate that it will be broadly applicable for diverse types of stable isotope research.

METHODS

We prepared standards diluted from USGS52 and from a commercial cylinder to develop a calibration curve spanning from 0.3 to 300 ppm N₂ O. To calibrate over this broad range, we binned each isotopocule (N₂ O, N¹⁵ NO, ¹⁵ NNO, and NN¹⁸ O) into low, medium, and high concentration ranges and then used mathematically similar polynomial functions to calibrate the isotopocules within each concentration range. We also assessed the temporal stability of the instrument and the capacity for our calibration approach to work with isotopically enriched gas samples.

RESULTS

Our calibration approach yielded generally accurate and precise data when isotopocules were calibrated in concentration ranges, and the measurements appeared to be temporally stable. For all isotopocules at natural abundance, the residual percentage error was smallest in the medium N₂ O range. There was more noise in the corrected isotopomers and isotopologue at natural abundance in samples with the lowest and highest N₂ O concentrations. Corrected isotopomer results from isotopically enriched samples were very precise.

CONCLUSIONS

Developing our calibration strategy involved learning several key lessons: (1) calibrate isotopocules in distinct concentration ranges, (2) use mathematically similar models to calibrate the isotopocules in each range, (3) calibrated N₂ O concentrations and δ values tend to be most accurate and precise in the medium N₂ O range, and (4) we encourage users to take advantage of isotopic enrichment to capitalize on laser-based instrument strengths.

What can we learn from N2 O isotope data? - Analytics, processes and modelling

The isotopic composition of nitrous oxide (N2 O) provides useful information for evaluating N2 O sources and budgets. Due to the co-occurrence of multiple N2 O transformation pathways, it is, however, challenging to use isotopic information to quantify the contribution of distinct processes across variable spatiotemporal scales. Here, we present an overview of recent progress in N2 O isotopic studies and provide suggestions for future research, mainly focusing on: analytical techniques; production and consumption processes; and interpretation and modelling approaches. Comparing isotope-ratio mass spectrometry (IRMS) with laser absorption spectroscopy (LAS), we conclude that IRMS is a precise technique for laboratory analysis of N2 O isotopes, while LAS is more suitable for in situ/inline studies and offers advantages for site-specific analyses. When reviewing the link between the N2 O isotopic composition and underlying mechanisms/processes, we find that, at the molecular scale, the specific enzymes and mechanisms involved determine isotopic fractionation effects. In contrast, at plot-to-global scales, mixing of N2 O derived from different processes and their isotopic variability must be considered. We also find that dual isotope plots are effective for semi-quantitative attribution of co-occurring N2 O production and reduction processes. More recently, process-based N2 O isotopic models have been developed for natural abundance and 15 N-tracing studies, and have been shown to be effective, particularly for data with adequate temporal resolution. Despite the significant progress made over the last decade, there is still great need and potential for future work, including development of analytical techniques, reference materials and inter-laboratory comparisons, further exploration of N2 O formation and destruction mechanisms, more observations across scales, and design and validation of interpretation and modelling approaches. Synthesizing all these efforts, we are confident that the N2 O isotope community will continue to advance our understanding of N2 O transformation processes in all spheres of the Earth, and in turn to gain improved constraints on regional and global budgets.

Precision Spectroscopy of Nitrous Oxide Isotopocules with a Cross-Dispersed Spectrometer and a Mid-Infrared Frequency Comb

As a potent greenhouse gas and an ozone-depleting agent, nitrous oxide (N2O) plays a critical role in the global climate. Effective mitigation relies on understanding global sources and sinks, which can be supported through isotopic analysis. We present a cross-dispersed spectrometer, coupled with a mid-infrared frequency comb, capable of simultaneously monitoring all singly substituted, stable isotopic variants of N2O. Rigorous evaluation of the instrument lineshape function and data treatment using a Doppler-broadened, low-pressure gas sample are discussed. Laboratory characterization of the spectrometer demonstrates sub-GHz spectral resolution and an average precision of 6.7 × 10-6 for fractional isotopic abundance retrievals in 1 s.

First investigation and absolute calibration of clumped isotopes in N2 O by mid-infrared laser spectroscopy

RATIONALE

Unravelling the biogeochemical cycle of the potent greenhouse gas nitrous oxide (N₂ O) is an underdetermined problem in environmental sciences due to the multiple source and sink processes involved, which complicate mitigation of its emissions. Measuring the doubly isotopically substituted molecules (isotopocules) of N₂ O can add new opportunities to fingerprint and constrain its cycle.

METHODS

We present a laser spectroscopic technique to selectively and simultaneously measure the eight most abundant isotopocules of N₂ O, including three doubly substituted species - so called "clumped isotopes". For the absolute quantification of individual isotopocule abundances, we propose a new calibration scheme that combines thermal equilibration of a working standard gas with a direct mole fraction-based approach.

RESULTS

The method is validated for a large range of isotopic composition values by comparison with other established methods (laser spectroscopy using conventional isotopic scale and isotope ratio mass spectrometry). Direct intercomparison with recently developed ultrahigh-resolution mass spectrometry shows clearly the advantages of the new laser technique, especially with respect to site specificity of isotopic substitution in the N₂ O molecule.

CONCLUSIONS

Our study represents a new methodological basis for the measurements of both singly substituted and clumped N₂ O isotopes. It has a high potential to stimulate future research in the N₂ O community by establishing a new class of reservoir-insensitive tracers and molecular-scale insights.

Nitrogen Isotope Fractionation During Archaeal Ammonia Oxidation: Coupled Estimates From Measurements of Residual Ammonium and Accumulated Nitrite

The naturally occurring nitrogen (N) isotopes, 15N and 14N, exhibit different reaction rates during many microbial N transformation processes, which results in N isotope fractionation. Such isotope effects are critical parameters for interpreting natural stable isotope abundances as proxies for biological process rates in the environment across scales. The kinetic isotope effect of ammonia oxidation (AO) to nitrite (NO2 -), performed by ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB), is generally ascribed to the enzyme ammonia monooxygenase (AMO), which catalyzes the first step in this process. However, the kinetic isotope effect of AMO, or ε A M O , has been typically determined based on isotope kinetics during product formation (cumulative product, NO2 -) alone, which may have overestimated ε A M O due to possible accumulation of chemical intermediates and alternative sinks of ammonia/ammonium (NH3/NH4 +). Here, we analyzed 15N isotope fractionation during archaeal ammonia oxidation based on both isotopic changes in residual substrate (RS, NH4 +) and cumulative product (CP, NO2 -) pools in pure cultures of the soil strain Nitrososphaera viennensis EN76 and in highly enriched cultures of the marine strain Nitrosopumilus adriaticus NF5, under non-limiting substrate conditions. We obtained ε A M O values of 31.9-33.1‰ for both strains based on RS (δ15NH4 +) and showed that estimates based on CP (δ15NO2 -) give larger isotope fractionation factors by 6-8‰. Complementary analyses showed that, at the end of the growth period, microbial biomass was 15N-enriched (10.1‰), whereas nitrous oxide (N2O) was highly 15N depleted (-38.1‰) relative to the initial substrate. Although we did not determine the isotope effect of NH4 + assimilation (biomass formation) and N2O production by AOA, our results nevertheless show that the discrepancy between ε A M O estimates based on RS and CP might have derived from the incorporation of 15N-enriched residual NH4 + after AMO reaction into microbial biomass and that N2O production did not affect isotope fractionation estimates significantly.

Microbial and isotopomer analysis of N2O generation pathways in ammonia removal biofilters

Ammonia removal biofilters can be a potential source of nitrous oxide (N₂O) production as a result of microbial nitrification and denitrification. In this study, these two N₂O generation pathways was quantified using isotopic site preference values (SP, 33‰ for nitrification and 0‰ for denitrification) in a 204-d operation. Tests with two moisture conditions (45% and 55%) and three inlet NH₃ concentrations (35, 18 and 0 ppmv) were performed. A 55+% NH₃ removal efficiency was achieved in biofilters with 35 and 18 ppmv ammonia supply, but no significant difference (p > 0.05) was found between the moisture treatments. Results showed that biofilters were clearly net sources of N₂O, and biofilters with higher moisture content generated significantly (p < 0.05) higher N₂O concentration. The N₂O generation did not stop even after the biofilters were terminated. The percentage of inlet NH₃-N converted into N₂O-N were 5.2%, 8.5% for biofilters with 45% moisture content, and 14.8%, 10.8% for those with 55% moisture content. Gene abundance of amoA and nosZ in packing materials (taken on days 64, 107, 140, 180 and 204) increased due to NH₃ input reaching the highest on day 140 and then decreased in response to reduced NH₃ supply on day 180 and 204. The changes of SP values suggested a shift between nitrification and denitrification with regard to N₂O generation. Overall, the nitrification was the dominant pathway for N₂O generation, but uncertainty exits as well. This study confirmed that NH₃-loaded biofilters were net sources of N₂O, and use of SP-N₂O may be helpful in better understanding the processes responsible for such emissions.

Agricultural soils a trigger to nitrous oxide: a persuasive greenhouse gas and its management

Agricultural soils form the backbone of the country's economic development. The increased population has not only reduced this treasure but also has affected the global climate at an alarming rate. Among the GHGs, emission of N₂O due to agricultural activities is nowadays a global concern. Agricultural industries have increased N₂O and CH₄ by 17% in the atmosphere since 1990, with an average emanation rate of around 60 MT CO₂ equivalents per year. Crop production accounts for approximately 50% of N₂O emissions stemming from the farming community and discharges of fertilizer-induced N₂O, for the time being estimated by IPCC at 1.24% of the N used ranging from 0.76% (rice) to 2.77% (maize). The concentration of atmospheric N₂O has increased (60 ppb) after the industrial revolution, at the pace of 0.73 ppb year^-1. Besides, soil structure, temperature, moisture, denitrifying microbial population, pH, C:N ratio, and relief are the factors which significantly enhance the N₂O levels into the atmosphere. N₂O as a GHG has more potential towards global warming than CO₂ and has a very long residence period (115 years) in the atmosphere. N₂O emission is nowadays a core issue which needs to be mitigated so as to decline the levels of its production in agricultural soils. However, priority should be given to the organic farming, management of soil chemistry, and phytoremediation to reduce the addition of N₂O into the ambient air. Furthermore, deployment of N₂O reductase in agricultural soils increases the efficiency of converting N₂O to inert N₂ which is a valuable strategy to reduce N₂O production.

Natural Nitrogen Isotope Ratios as a Potential Indicator of N2O Production Pathways in a Floodplain Fen

Nitrous oxide (N2O), a major greenhouse gas and ozone depleter, is emitted from drained organic soils typically developed in floodplains. We investigated the effect of the water table depth and soil oxygen (O2) content on N2O fluxes and their nitrogen isotope composition in a drained floodplain fen in Estonia. Measurements were done at natural water table depth, and we created a temporary anoxic environment by experimental flooding. From the suboxic peat (0.5–6 mg O2/L) N2O emissions peaked at 6 mg O2/L and afterwards decreased with decreasing O2. From the anoxic and oxic peat (0 and >6 mg O2/L, respectively) N2O emissions were low. Under anoxic conditions the δ15N/δ14N ratio of the top 10 cm peat layer was low, gradually decreasing to 30 cm. In the suboxic peat, δ15N/δ14N ratios increased with depth. In samples of peat fluctuating between suboxic and anoxic, the elevated 15N/14N ratios (δ15N = 7–9‰ ambient N2) indicated intensive microbial processing of nitrogen. Low values of site preference (SP; difference between the central and peripheral 15N atoms) and δ18O-N2O in the captured gas samples indicate nitrifier denitrification in the floodplain fen.

Dominance of nitrous oxide production by nitrification and denitrification in the shallow Chaohu Lake, Eastern China: Insight from isotopic characteristics of dissolved nitrous oxide

In recent decades, most lakes in Eastern China have suffered unprecedented nitrogen pollution, making them potential "hotspots" for N₂O production and emission. Understanding the mechanisms of N₂O production and quantifying emissions in these lakes is essential for assessing regional and global N₂O budgets and for mitigating N₂O emissions. Here, we measure isotopic compositions (δ¹⁵N-N₂O and δ¹⁸O-N₂O) and site preference (SP) of dissolved N₂O in an attempt to differentiate the relative contribution of N₂O production processes in the shallow, eutrophic Chaohu Lake, Eastern China. Our results show that the bulk isotope ratios for δ¹⁵N-N₂O, δ¹⁸O-N₂O, and SP were 5.8 ± 3.9‰, 29.3 ± 13.4‰, and 18.6 ± 3.2‰, respectively. More than 76.8% of the dissolved N₂O was produced via microbial processes. Findings suggest that dissolved N₂O is primarily produced via nitrification (between 27.3% and 48.0%) and denitrification (between 31.9% and 49.5%). In addition, isotopic data exhibit significant N₂O consumption during denitrification. We estimate the average N₂O emission rate (27.5 ± 26.0 μg N m^-2 h^-1), which is higher than that from rivers in the Changjiang River network (CRN). We scaled-up the regional N₂O emission (from 1.98 Gg N yr^-1 to 4.58 Gg N yr^-1) using a N₂O emission factor (0.51 ± 0.63%) for shallow lakes in the middle and lower region of the CRN. We suggest that beneficial circumstances for promoting complete denitrification may be helpful for reducing N₂O production and emissions in fresh surface waters.

An automated, laser-based measurement system for nitrous oxide isotope and isotopomer ratios at nanomolar levels

RATIONALE

Nitrous oxide (N₂ O) is an atmospheric trace gas regulating Earth's climate, and is a key intermediate of many nitrogen cycling processes in aquatic ecosystems. Laser-based technology for N₂ O concentration and isotopic/isotopomeric analyses has potential advantages, which include high analytical specificity, low sample size requirement and reduced cost.

METHODS

An autosampler with a purge-and-trap module is coupled to a cavity ring-down spectrometer to achieve automated and high-throughput measurements of N₂ O concentrations, N₂ O isotope ratios (δ¹⁵ N_bulk and δ¹⁸ O values) and position-specific isotopomer ratios (δ¹⁵ N_α and δ¹⁵ N_β values). The system provides accuracy and precision similar to those for measurements made by traditional isotope ratio mass spectrometry (IRMS) techniques.

RESULTS

The sample sizes required were 0.01-1.1 nmol-N₂ O. Measurements of four N₂ O isotopic/isotopomeric references were cross-calibrated with those obtained by IRMS. With a sample size of 0.50 nmol-N₂ O, the measurement precision (1σ) for δ¹⁵ N_α , δ¹⁵ N_β , δ¹⁵ N_bulk and δ¹⁸ O values was 0.61, 0.33, 0.41 and 0.43‰, respectively. Correction schemes were developed for sample size-dependent isotopic/isotopomeric deviations. The instrumental system demonstrated consistent measurements of dissolved N₂ O concentrations, isotope/isotopomer ratios and production rates in seawater.

CONCLUSIONS

The coupling of an autosampler with a purge-and-trap module to a cavity ring-down spectrometer not only significantly reduces sample size requirements, but also offers comprehensive investigation of N₂ O production pathways by the measurement of natural abundance and tracer level isotopes and isotopomers. Furthermore, the system can perform isotopic analyses of dissolved and solid nitrogen-containing samples using N₂ O as the analytical proxy.

Determination of the triple oxygen and carbon isotopic composition of CO2 from atomic ion fragments formed in the ion source of the 253 Ultra high-resolution isotope ratio mass spectrometer

RATIONALE

Determination of δ¹⁷ O values directly from CO₂ with traditional gas source isotope ratio mass spectrometry is not possible due to isobaric interference of ¹³ C¹⁶ O¹⁶ O on ¹² C¹⁷ O¹⁶ O. The methods developed so far use either chemical conversion or isotope equilibration to determine the δ¹⁷ O value of CO₂ . In addition, δ¹³ C measurements require correction for the interference from ¹² C¹⁷ O¹⁶ O on ¹³ C¹⁶ O¹⁶ O since it is not possible to resolve the two isotopologues.

METHODS

We present a technique to determine the δ¹⁷ O, δ¹⁸ O and δ¹³ C values of CO₂ from the fragment ions that are formed upon electron ionization in the ion source of the Thermo Scientific 253 Ultra high-resolution isotope ratio mass spectrometer (hereafter 253 Ultra). The new technique is compared with the CO₂ -O₂ exchange method and the ¹⁷ O-correction algorithm for δ¹⁷ O and δ¹³ C values, respectively.

RESULTS

The scale contractions for δ¹³ C and δ¹⁸ O values are slightly larger for fragment ion measurements than for molecular ion measurements. The δ¹⁷ O and Δ¹⁷ O values of CO₂ can be measured on the ¹⁷ O⁺ fragment with an internal error that is a factor 1-2 above the counting statistics limit. The ultimate precision depends on the signal intensity and on the total time that the ¹⁷ O⁺ beam is monitored; a precision of 14 ppm (parts per million) (standard error of the mean) was achieved in 20 hours at the University of Göttingen. The Δ¹⁷ O measurements with the O-fragment method agree with the CO₂ -O₂ exchange method over a range of Δ¹⁷ O values of -0.3 to +0.7‰.

CONCLUSIONS

Isotope measurements on atom fragment ions of CO₂ can be used as an alternative method to determine the carbon and oxygen isotopic composition of CO₂ without chemical processing or corrections for mass interferences.

Fraction of nitrous oxide production in nitrification and its effect on total soil emission: A meta-analysis and global-scale sensitivity analysis using a process-based model

Nitrification in terrestrial soils is one of the major processes of emission of nitrous oxide (N₂O), a potent greenhouse gas and stratospheric-ozone-depleting substance. We assessed the fraction of N₂O emission associated with nitrification in soil through a meta-analysis and sensitivity analysis using a process-based model. We corrected observational values of gross nitrification and associated N₂O emission rates from 71 records for various soils in the world spanning from 0.006% to 29.5%. We obtained a median value of 0.14%, and then assessed how the nitrification-associated N₂O emission fraction has been considered in terrestrial nitrogen cycle models. Using a process-based biogeochemical model, we conducted a series of sensitivity analyses for the effects of different values of nitrification-associated N₂O emission fraction on soil N₂O emission. Using an empirical relationship between soil pH and nitrification-associated N₂O emission fraction, the model well simulated global emission patterns (global total in the 2000s, 16.8 Tg N₂O yr^–1). Differences in the nitrification-associated N₂O emission fraction caused differences in total N₂O emission of as much as 2.5 Tg N₂O yr^–1. Therefore, to obtain reliable estimation of soil N₂O emission for nitrogen and climate management, it is important to constrain the parameterization in models by ensuring extensive and accurate observations.

N2O emissions and source partitioning using stable isotopes under furrow and drip irrigation in vegetable field of North China

N₂O emissions have increased significantly over the last decades, with much of the increase being ascribed to the expansion in agricultural land. Agricultural water management has significant influence on N₂O emissions, hence the investigation of N₂O emissions and the underlying production mechanisms under different irrigation managements would provide insights for N₂O emission reduction and rational water usage. Here, we used the stable isotope method to evaluate the N₂O isotopic signatures and the site preference, to clarify the N₂O emission dynamics and the N₂O source partitioning under different irrigation managements. We applied a furrow irrigation system and a drip irrigation system to maintain two different soil water conditions, allowance of dry-wet cycles and relatively stable water conditions, respectively. We found that the N₂O emission was significantly decreased under drip irrigation compared to furrow irrigation with cumulated N₂O flux of 526.3 mg m^-2 and 571.0 mg m^-2, respectively. In general, furrow irrigation with its dry-wet alternations promoted N₂O emissions, while drip irrigation created a relatively stable environment that reduced N₂O emissions. The intramolecular ¹⁵N isotopic composition of N₂O was used to partition the relative contribution of denitrification and nitrification. Nitrification dominated the processes driving N₂O production under both treatments, nearly accounting for 76% up to 100% during the initial N₂O peaks. Effective measure for mitigating N₂O emissions from the investigated vegetable field could be obtained by replacing the traditional furrow irrigation with drip irrigation.

Constraining N cycling in the ecosystem model LandscapeDNDC with the stable isotope model SIMONE

The isotopic composition (ic) of soil nitrogen (N) and, more recently, the intramolecular distribution of ¹⁵ N in the N₂ O molecule (site preference, SP) are powerful instruments to identify dominant N turnover processes, and to attribute N₂ O emissions to their source processes. Despite the process information contained in the ic of N species and the associated potential for model validation, the implementation of isotopes in ecosystem models has lagged behind. To foster the validation of ecosystem models based on the ic of N species, we developed the stable isotope model for nutrient cycles (SIMONE). SIMONE uses fluxes between ecosystem N pools (soil organic N, mineral N, plants, microbes) calculated by biogeochemical models, and literature isotope effects for these processes to calculate the ic of N species. Here, we present the concept of SIMONE, apply it to simulations of the biogeochemical model LandscapeDNDC, and assess the capability of ¹⁵ N-N₂ O and, to our knowledge for the first time, SP, to constrain simulated N fluxes by LandscapeDNDC. LandscapeDNDC successfully simulated N₂ O emission, soil nitrate, and ammonium, as well as soil environmental conditions of an intensively managed grassland site in Switzerland. Accordingly, the dynamics of ¹⁵ N-N₂ O and SP of soil N₂ O fluxes as simulated by SIMONE agreed well with measurements, though ¹⁵ N-N₂ O was on average underestimated and SP overestimated (root-mean-square error [RMSE] of 8.4‰ and 7.3‰, respectively). Although ¹⁵ N-N₂ O could not constrain the N cycling process descriptions of LandscapeDNDC, the overestimation of SP indicated an overestimation of simulated nitrification rates by 10-59% at low water content, suggesting the revision of the corresponding model parameterization. Our findings show that N isotope modeling in combination with only recently available high- frequency measurements of the N₂ O ic are promising tools to identify and address weaknesses in N cycling of ecosystem models. This will finally contribute to augmenting the development of model-based strategies for mitigating N pollution.

Biochar amendment suppresses N2 O emissions but has no impact on 15 N site preference in an anaerobic soil

RATIONALE

Biochar amendments often decrease N₂ O gas production from soil, but the mechanisms and magnitudes are still not well characterized since N₂ O can be produced via several different microbial pathways. We evaluated the influence of biochar amendment on N₂ O emissions and N₂ O isotopic composition, including ¹⁵ N site preference (SP) under anaerobic conditions.

METHODS

An agricultural soil was incubated with differing levels of biochar. Incubations were conducted under anaerobic conditions for 10 days with and without acetylene, which inhibits N₂ O reduction to N₂ . The N₂ O concentrations were measured every 2 days, the SPs were determined after 5 days of incubation, and the inorganic nitrogen concentrations were measured after the incubation.

RESULTS

The SP values with acetylene were consistent with N₂ O production by bacterial denitrification and those without acetylene were consistent with bacterial denitrification that included N₂ O reduction to N₂ . There was no effect of biochar on N₂ O production in the presence of acetylene between day 3 and day 10. However, in the absence of acetylene, soils incubated with 4% biochar produced less N₂ O than soils with no biochar addition. Different amounts of biochar amendment did not change the SP values.

CONCLUSIONS

Our study used N₂ O emission rates and SP values to understand biochar amendment mechanisms and demonstrated that biochar amendment reduces N₂ O emissions by stimulating the last step of denitrification. It also suggested a possible shift in N₂ O-reducing microbial taxa in 4% biochar samples.

Methane and nitrous oxide emission from different treatment units of municipal wastewater treatment plants in Southwest Germany

We measured the atmospheric emission rates of methane (CH₄) and nitrous oxide (N₂O) in two wastewater treatment plants in Southwest Germany, which apply different treatment technologies. Dissolved gas concentrations and fluxes were measured during all processing steps as well as in the discharge receiving streams. N₂O isotopocule analysis revealed that NH₂OH oxidation during nitrification contributed 86–96% of the N₂O production in the nitrification tank, whereas microbial denitrification was the main production pathway in the denitrification tank in a conventional activated sludge (CAS) system. During wastewater treatment using a modified Ludzack-Ettinger system (MLE) with energy recovery, N₂O was predominantly produced by the NO₂^- reduction by nitrifier-denitrification process. For both systems, N₂O emissions were low, with emission factors of 0.008% and 0.001% for the MLE and the CAS system, respectively. In the effluent-receiving streams, bacterial denitrification and nitrification contributed nearly equally to N₂O production. The CH₄ emission from the MLE system was estimated as 118.1 g-C d^-1, which corresponds to an emission factor of 0.004%, and was three times lower than the emission from the CAS system with 0.01%.

Development of a field-deployable method for simultaneous, real-time measurements of the four most abundant N2O isotopocules

Understanding and quantifying the biogeochemical cycle of N₂O is essential to develop effective N₂O emission mitigation strategies. This study presents a novel, fully automated measurement technique that allows simultaneous, high-precision quantification of the four main N₂O isotopocules (¹⁴N¹⁴N¹⁶O, ¹⁴N¹⁵N¹⁶O, ¹⁵N¹⁴N¹⁶O and ¹⁴N¹⁴N¹⁸O) in ambient air. The instrumentation consists of a trace gas extractor (TREX) coupled to a quantum cascade laser absorption spectrometer, designed for autonomous operation at remote measurement sites. The main advantages this system has over its predecessors are a compact spectrometer design with improved temperature control and a more compact and powerful TREX device. The adopted TREX device enhances the flexibility of the preconcentration technique for higher adsorption volumes to target rare isotope species and lower adsorption temperatures for highly volatile substances. All system components have been integrated into a standardized instrument rack to improve portability and accessibility for maintenance. With an average sampling frequency of approximately 1 h^-1, this instrumentation achieves a repeatability of 0.09, 0.13, 0.17 and 0.12 ‰ for δ¹⁵N^α, δ¹⁵N^β, δ¹⁸O and site preference of N₂O, respectively, for pressurized ambient air. The repeatability for N₂O mole fraction measurements is better than 1 ppb (parts per billion, 10^-9 moles per mole of dry air).

The isotopic structures of geological organic compounds

Organic compounds are ubiquitous in the Earth's surface, sediments and many rocks, and preserve records of geological, geochemical and biological history; they are also critical natural resources and major environmental pollutants. The naturally occurring stable isotopes of volatile elements (D, 13C, 15N, 17,18O, 33,34,36S) provide one way of studying the origin, evolution and migration of geological organic compounds. The study of bulk stable isotope compositions (i.e. averaged across all possible molecular isotopic forms) is well established and widely practised, but frequently results in non-unique interpretations. Increasingly, researchers are reading the organic isotopic record with greater depth and specificity by characterizing stable isotope ‘structures’ – the proportions of site-specific and multiply substituted isotopologues that contribute to the total rare-isotope inventory of each compound. Most of the technologies for measuring stable isotope structures of organic molecules have been only recently developed and to date have been applied only in an exploratory way. Nevertheless, recent advances have demonstrated that molecular isotopic structures provide distinctive records of biosynthetic origins, conditions and mechanisms of chemical transformation during burial, and forensic fingerprints of exceptional specificity. This paper provides a review of this young field, which is organized to follow the evolution of molecular isotopic structure from biosynthesis, through diagenesis, catagenesis and metamorphism.

Quantifying nitrous oxide production pathways in wastewater treatment systems using isotope technology - A critical review

Nitrous oxide (N₂O) is an important greenhouse gas and an ozone-depleting substance which can be emitted from wastewater treatment systems (WWTS) causing significant environmental impacts. Understanding the N₂O production pathways and their contribution to total emissions is the key to effective mitigation. Isotope technology is a promising method that has been applied to WWTS for quantifying the N₂O production pathways. Within the scope of WWTS, this article reviews the current status of different isotope approaches, including both natural abundance and labelled isotope approaches, to N₂O production pathways quantification. It identifies the limitations and potential problems with these approaches, as well as improvement opportunities. We conclude that, while the capabilities of isotope technology have been largely recognized, the quantification of N₂O production pathways with isotope technology in WWTS require further improvement, particularly in relation to its accuracy and reliability.

Biogas Digester Hydraulic Retention Time Affects Oxygen Consumption Patterns and Greenhouse Gas Emissions after Application of Digestate to Soil

Knowledge about environmental impacts associated with the application of anaerobic digestion residue to agricultural land is of interest owing to the rapid proliferation of biogas plants worldwide. However, virtually no information exists concerning how soil-emitted NO is affected by the feedstock hydraulic retention time (HRT) in the biogas digester. Here, the O planar optode technique was used to visualize soil O dynamics following the surface application of digestates of the codigestion of pig slurry and agro-industrial waste. We also used NO isotopomer analysis of soil-emitted NO to determine the NO production pathways, i.e., nitrification or denitrification. Two-dimensional images of soil O indicated that anoxic and hypoxic conditions developed at 2.0- and 1.5-cm soil depth for soil amended with the digestate produced with 15-d (PO15) and 30-d (PO30) retention time, respectively. Total NO emissions were significantly lower for PO15 than PO30 due to the greater expansion of the anoxic zone, which enhanced NO reduction via complete denitrification. However, cumulative CO emissions were not significantly different between PO15 and PO30 for the entire incubation period. During incubation, NO emissions came from both nitrification and denitrification in amended soils. Increasing the HRT of the biogas digester appears to induce significant NO emissions, but it is unlikely to affect the NO production pathways after application to soil.

Isotopocule analysis of biologically produced nitrous oxide in various environments

Natural abundance ratios of isotopocules, molecules that have the same chemical constitution and configuration, but that only differ in isotope substitution, retain a record of a compound's origin and reactions. A method to measure isotopocule ratios of nitrous oxide (N₂ O) has been established by using mass analysis of molecular ions and fragment ions. The method has been applied widely to environmental samples from the atmosphere, ocean, fresh water, soils, and laboratory-simulation experiments. Results show that isotopocule ratios, particularly the ¹⁵ N-site preference (difference between isotopocule ratios ¹⁴ N¹⁵ N¹⁶ O/¹⁴ N¹⁴ N¹⁶ O and ¹⁵ N¹⁴ N¹⁶ O/¹⁴ N¹⁴ N¹⁶ O), have a wide range that depends on their production and consumption processes. Observational and laboratory studies of N₂ O related to biological processes are reviewed and discussed to elucidate complex material cycles of this trace gas, which causes global warming and stratospheric ozone depletion. © 2015 Wiley Periodicals, Inc. Mass Spec Rev 36:135-160, 2017.

Measurement of rare isotopologues of nitrous oxide by high-resolution multi-collector mass spectrometry

RATIONALE

Bulk and position-specific stable isotope characterization of nitrous oxide represents one of the most powerful tools for identifying its environmental sources and sinks. Constraining (14) N(15) N(18) O and (15) N(14) N(18) O will add two new dimensions to our ability to uniquely fingerprint N2 O sources.

METHODS

We describe a technique to measure six singly and doubly substituted isotopic variants of N2 O, constraining the values of δ(15) N, δ(18) O, ∆(17) O, (15) N site preference, and the clumped isotopomers (14) N(15) N(18) O and (15) N(14) N(18) O. The technique uses a Thermo MAT 253 Ultra, a high-resolution multi-collector gas source isotope ratio mass spectrometer. It requires 8-10 hours per sample and ~10 micromoles or more of pure N2 O.

RESULTS

We demonstrate the precision and accuracy of these measurements by analyzing N2 O brought to equilibrium in its position-specific and clumped isotopic composition by heating in the presence of a catalyst. Finally, an illustrative analysis of biogenic N2 O from a denitrifying bacterium suggests that its clumped isotopic composition is controlled by kinetic isotope effects in N2 O production.

CONCLUSIONS

We developed a method for measuring six isotopic variants of N2 O and tested it with analyses of biogenic N2 O. The added isotopic constraints provided by these measurements will enhance our ability to apportion N2 O sources.

N2O production, a widespread trait in fungi

N₂O is a powerful greenhouse gas contributing both to global warming and ozone depletion. While fungi have been identified as a putative source of N₂O, little is known about their production of this greenhouse gas. Here we investigated the N₂O-producing ability of a collection of 207 fungal isolates. Seventy strains producing N₂O in pure culture were identified. They were mostly species from the order Hypocreales order—particularly Fusarium oxysporum and Trichoderma spp.—and to a lesser extent species from the orders Eurotiales, Sordariales, and Chaetosphaeriales. The N₂O ¹⁵N site preference (SP) values of the fungal strains ranged from 15.8‰ to 36.7‰, and we observed a significant taxa effect, with Penicillium strains displaying lower SP values than the other fungal genera. Inoculation of 15 N₂O-producing strains into pre-sterilized arable, forest and grassland soils confirmed the ability of the strains to produce N₂O in soil with a significant strain-by-soil effect. The copper-containing nitrite reductase gene (nirK) was amplified from 45 N₂O-producing strains, and its genetic variability showed a strong congruence with the ITS phylogeny, indicating vertical inheritance of this trait. Taken together, this comprehensive set of findings should enhance our knowledge of fungi as a source of N₂O in the environment.

From the ground up: global nitrous oxide sources are constrained by stable isotope values

Rising concentrations of nitrous oxide (N₂O) in the atmosphere are causing widespread concern because this trace gas plays a key role in the destruction of stratospheric ozone and it is a strong greenhouse gas. The successful mitigation of N₂O emissions requires a solid understanding of the relative importance of all N₂O sources and sinks. Stable isotope ratio measurements (δ¹⁵N-N₂O and δ¹⁸O-N₂O), including the intramolecular distribution of ¹⁵N (site preference), are one way to track different sources if they are isotopically distinct. ‘Top-down’ isotope mass-balance studies have had limited success balancing the global N₂O budget thus far because the isotopic signatures of soil, freshwater, and marine sources are poorly constrained and a comprehensive analysis of global N₂O stable isotope measurements has not been done. Here we used a robust analysis of all available in situ measurements to define key global N₂O sources. We showed that the marine source is isotopically distinct from soil and freshwater N₂O (the continental source). Further, the global average source (sum of all natural and anthropogenic sources) is largely controlled by soils and freshwaters. These findings substantiate past modelling studies that relied on several assumptions about the global N₂O cycle. Finally, a two-box-model and a Bayesian isotope mixing model revealed marine and continental N₂O sources have relative contributions of 24–26% and 74–76% to the total, respectively. Further, the Bayesian modeling exercise indicated the N₂O flux from freshwaters may be much larger than currently thought.

Stable isotopes and iron oxide mineral products as markers of chemodenitrification

When oxygen is limiting in soils and sediments, microorganisms utilize nitrate (NO3-) in respiration--through the process of denitrification--leading to the production of dinitrogen (N2) gas and trace amounts of nitrous (N2O) and nitric (NO) oxides. A chemical pathway involving reaction of ferrous iron (Fe2+) with nitrite (NO2-), an intermediate in the denitrification pathway, can also result in production of N2O. We examine the chemical reduction of NO2- by Fe(II)--chemodenitrification--in anoxic batch incubations at neutral pH. Aqueous Fe2+ and NO2- reacted rapidly, producing N2O and generating Fe(III) (hydr)oxide mineral products. Lepidocrotite and goethite, identified by synchrotron X-ray diffraction (XRD) and extended X-ray absorption fine structure (EXAFS) spectroscopy, were produced from initially aqueous reactants, with two-line ferrihydrite increasing in abundance later in the reaction sequence. Based on the similarity of apparent rate constants with different mineral catalysts, we propose that the chemodenitrification rate is insensitive to the type of Fe(III) (hydr)oxide. With stable isotope measurements, we reveal a narrow range of isotopic fractionation during NO2- reduction to N2O. The location of N isotopes in the linear N2O molecule, known as site preference, was also constrained to a signature range. The coexistence of Fe(III) (hydr)oxide, characteristic 15N and 18O fractionation, and N2O site preference may be used in combination to qualitatively distinguish between abiotic and biogenically emitted N2O--a finding important for determining N2O sources in natural systems.

Isotopologue ratios of N2O and N2 measurements underpin the importance of denitrification in differently N-loaded riparian alder forests

Known as biogeochemical hotspots in landscapes, riparian buffer zones exhibit considerable potential concerning mitigation of groundwater contaminants such as nitrate, but may in return enhance the risk for indirect N2O emission. Here we aim to assess and to compare two riparian gray alder forests in terms of gaseous N2O and N2 fluxes and dissolved N2O, N2, and NO3(-) in the near-surface groundwater. We further determine for the first time isotopologue ratios of N2O dissolved in the riparian groundwater in order to support our assumption that it mainly originated from denitrification. The study sites, both situated in Estonia, northeastern Europe, receive contrasting N loads from adjacent uphill arable land. Whereas N2O emissions were rather small at both sites, average gaseous N2-to-N2O ratios inferred from closed-chamber measurements and He-O laboratory incubations were almost four times smaller for the heavily loaded site. In contrast, groundwater parameters were less variable among sites and between landscape positions. Campaign-based average (15)N site preferences of N2O (SP) in riparian groundwater ranged between 11 and 44 ‰. Besides the strong prevalence of N2 emission over N2O fluxes and the correlation pattern between isotopologue and water quality data, this comparatively large range highlights the importance of denitrification and N2O reduction in both riparian gray alder stands.

Interlaboratory assessment of nitrous oxide isotopomer analysis by isotope ratio mass spectrometry and laser spectroscopy: current status and perspectives

RATIONALE

In recent years, research and applications of the N2O site-specific nitrogen isotope composition have advanced, reflecting awareness of the contribution of N2O to the anthropogenic greenhouse effect, and leading to significant progress in instrument development. Further dissemination of N2O isotopomer analysis, however, is hampered by a lack of internationally agreed gaseous N2O reference materials and an uncertain compatibility of different laboratories and analytical techniques.

METHODS

In a first comparison approach, eleven laboratories were each provided with N2O at tropospheric mole fractions (target gas T) and two reference gases (REF1 and REF2). The laboratories analysed all gases, applying their specific analytical routines. Compatibility of laboratories was assessed based on N2O isotopocule data for T, REF1 and REF2. Results for T were then standardised using REF1 and REF2 to evaluate the potential of N2O reference materials for improving compatibility between laboratories.

RESULTS

Compatibility between laboratories depended on the analytical technique: isotope ratio mass spectrometry (IRMS) results showed better compatibility for δ(15)N values, while the performance of laser spectroscopy was superior with respect to N2O site preference. This comparison, however, is restricted by the small number of participating laboratories applying laser spectroscopy. Offset and two-point calibration correction of the N2O isotopomer data significantly improved the consistency of position-dependent nitrogen isotope data while the effect on δ(15)N values was only minor.

CONCLUSIONS

The study reveals that for future research on N2O isotopocules, standardisation against N2O reference material is essential to improve interlaboratory compatibility. For atmospheric monitoring activities, we suggest N2O in whole air as a unifying scale anchor.

Isotopic analysis of N2O produced in a conventional wastewater treatment system operated under different aeration conditions

RATIONALE

Dissolved oxygen (DO) concentration is a key parameter of nitrous oxide (N2O), a greenhouse gas, emitted from wastewater treatment systems. No study of stable isotopes has described N2O production during conventional activated sludge (CAS) treatment under different DO concentrations.

METHODS

Concentrations and isotope ratios, including intramolecular site preference of (15)N in NNO (SP), of N2O were measured using gas chromatography/isotope ratio mass spectrometry (GC/IRMS) for samples from seven points in a wastewater treatment plant (WWTP) operated with three aeration conditions. The δ(15)N values of NH4(+) and the δ(15)N and δ(18)O values of NO3(-) were measured using IRMS.

RESULTS

Aeration tank water was supersaturated with N2O. The highest value, 3700 nmol kg(-1), was observed at the aeration tank end and in settled sludge under the lowest aeration condition. About 0.03% of the influent NH4(+) was emitted as gaseous N2O at the lowest aeration condition. The conversion rate was 0.14% under the highest aeration condition. The SP values were significantly higher at the middle and end of the aeration tanks under the highest aeration condition, but were nearly zero or slightly negative under lower aeration conditions.

CONCLUSIONS

Under the highest aeration condition, NH2OH oxidation (nitrification) was the main contributor to N2O production at about 90% and 57%, respectively, at the aeration tank middle and end. At other sampling points, 55-63% of the N2O was produced by bacterial NO2(-) reduction (nitrifier-denitrification) with a lower nitrification contribution. For all sampling points in the lower aeration experiments, NO2(-) reduction was a major N2O production pathway.

Identification of key nitrous oxide production pathways in aerobic partial nitrifying granules

The identification of the key nitrous oxide (N2O) production pathways is important to establish a strategy to mitigate N2O emission. In this study, we combined real-time gas-monitoring analysis, (15)N stable isotope analysis, denitrification functional gene transcriptome analysis and microscale N2O concentration measurements to identify the main N2O producers in a partial nitrification (PN) aerobic granule reactor, which was fed with ammonium and acetate. Our results suggest that heterotrophic denitrification was the main contributor to N2O production in our PN aerobic granule reactor. The heterotrophic denitrifiers were probably related to Rhodocyclales bacteria, although different types of bacteria were active in the initial and latter stages of the PN reaction cycles, most likely in response to the presence of acetate. Hydroxylamine oxidation and nitrifier denitrification occurred, but their contribution to N2O emission was relatively small (20-30%) compared with heterotrophic denitrification. Our approach can be useful to quantitatively examine the relative contributions of the three pathways (hydroxylamine oxidation, nitrifier denitrification and heterotrophic denitrification) to N2O emission in mixed microbial populations.

Expression of denitrification genes in response to a waterlogging event in a Fluvisol and its relationship with large nitrous oxide pulses

The contributions of large N2 O pulses following waterlogging to the annual cumulative N2 O productions were significant in a Fluvisol. To uncover the mechanisms underlying these large N2 O pulses, a Fluvisol sampled from an agricultural field in Japan was subjected to waterlogging during incubation. Larger N2 O emissions were observed in intact soil cores when compared to emissions from sieved soils, indicating the importance of soil properties. The most important factor controlling the magnitude of the N2 O pulses after waterlogging was the soil moisture prior to waterlogging. The major pathway for N2 O production was denitrification. Quantitative PCR and quantitative RT-PCR analyses showed that the denitrification genes (nirS, nirK, and nosZ) correlated with N2 O emissions at the mRNA level but not at the DNA level. The change in denitrification gene mRNA levels was more prominent in the 0- to 1-cm soil compared with the 1- to 3-cm soil. Water-soluble and hot-water-soluble carbon contents also showed the highest amount in the 0- to 1-cm soil. These indicate that there was a strong variation in soil microbial properties over very small changes in soil depth, and this variation is important in determining the magnitude of N2 O emissions.

Isotopic signatures of N2O produced by ammonia-oxidizing archaea from soils

N2O gas is involved in global warming and ozone depletion. The major sources of N2O are soil microbial processes. Anthropogenic inputs into the nitrogen cycle have exacerbated these microbial processes, including nitrification. Ammonia-oxidizing archaea (AOA) are major members of the pool of soil ammonia-oxidizing microorganisms. This study investigated the isotopic signatures of N2O produced by soil AOA and associated N2O production processes. All five AOA strains (I.1a, I.1a-associated and I.1b clades of Thaumarchaeota) from soil produced N2O and their yields were comparable to those of ammonia-oxidizing bacteria (AOB). The levels of site preference (SP), δ(15)N(bulk) and δ(18)O -N2O of soil AOA strains were 13-30%, -13 to -35% and 22-36%, respectively, and strains MY1-3 and other soil AOA strains had distinct isotopic signatures. A (15)N-NH4(+)-labeling experiment indicated that N2O originated from two different production pathways (that is, ammonia oxidation and nitrifier denitrification), which suggests that the isotopic signatures of N2O from AOA may be attributable to the relative contributions of these two processes. The highest N2O production yield and lowest site preference of acidophilic strain CS may be related to enhanced nitrifier denitrification for detoxifying nitrite. Previously, it was not possible to detect N2O from soil AOA because of similarities between its isotopic signatures and those from AOB. Given the predominance of AOA over AOB in most soils, a significant proportion of the total N2O emissions from soil nitrification may be attributable to AOA.

Fully automated, high-precision instrumentation for the isotopic analysis of tropospheric N2O using continuous flow isotope ratio mass spectrometry

RATIONALE

Measurements of the isotopic composition of nitrous oxide in the troposphere have the potential to bring new information about the uncertain N2O budget, which mole fraction data alone have not been able to resolve. Characterizing the expected subtle variations in tropospheric N2O isotopic composition demands high-precision and high-frequency measurements. To enable useful observations of N2O isotopic composition in tropospheric air to reduce N2O source and sink uncertainty, it was necessary to develop a high-precision measurement system with fully automated capabilities for autonomous deployment at remote research stations.

METHODS

A fully automated pre-concentration system for high-precision measurements of N2O isotopic composition (δ(15)N(β) , δ(15)N(α), δ(18)O) in tropospheric air has been developed which combines a custom liquid-cryogen-free cryo-trapping system and gas chromatograph interfaced to a continuous flow isotope ratio mass spectrometry (IRMS) system. A quadrupole mass spectrometer was coupled in parallel to the IRMS system during development to evaluate peak interference. Multi-port inlet and fully-automated capabilities allow streamlined analyses between in situ air inlet, air standards, flask air sample, or other gas source in exactly replicated analysis sequences.

RESULTS

The system has the highest precision to date for (15)N site-specific composition results (δ(15) N(α) ±0.11‰, δ(15)N(β) ±0.14‰ (1σ)), attributed mostly to uniformity of analytical cycles and particular attention to fluorocarbon interference noted for (15)N site-specific measurements by IRMS. Air measurements demonstrated the fully automated capacity and performance.

CONCLUSIONS

The system makes substantial headway in measurement precision, possibly defining the limits of IRMS measurement capabilities in low concentration N2O air samples, with fully automated capabilities to enable high-frequency in situ measurements.

Isotopomer and isotopologue signatures of N2O produced in alpine ecosystems on the Qinghai-Tibetan Plateau

RATIONALE

Static-chamber flux measurements have suggested that one of the world's largest grasslands, the Qinghai-Tibetan Plateau (QTP), is a potential source of nitrous oxide (N2O), a major greenhouse gas. However, production and consumption pathways of N2O have not been identified by in situ field measurements.

METHODS

Ratios of N2O isotopomers ((14)N(15)N(16)O and (15)N(14)N(16)O) and an isotopologue ((14)N(14)N(18)O) with respect to (14)N(14)N(16)O in the atmosphere, static chambers, and soils were measured by gas chromatography and mass spectrometry in the summer of 2005 and the following winter of 2006 at three typical alpine ecosystems: alpine meadow, alpine shrub, and alpine wetland, on the QTP, China.

RESULTS

Site preference (SP) values of soil-emitted N2 O were estimated as 33.7‰ and 30.1‰ for alpine meadow and shrub, respectively, suggesting larger contributions by fungal denitrification, than by bacterial denitrification and nitrifier-denitrification, to N2 O production. Statistical analysis of the relationship between SP and δ(15)N(bulk) values indicated that in alpine meadow, shrub, and wetland sites fungal denitrification contributed 40.7%, 40.0%, and 23.2% to gross N2O production and the produced N2O was reduced by 87.6%, 82.9%, and 92.7%, respectively.

CONCLUSIONS

The combined measurements of N2O concentration, flux, and isotopomeric signatures provide a robust estimation of N2O circulation dynamics in alpine ecosystems on the QTP, which would contribute to the development of ecosystem nitrogen cycle model.