Weaker plant-enemy interactions decrease tree seedling diversity with edge-effects in a fragmented tropical forest

Overgrazing on unmanaged grassland interfered with the restoration of adjacent grazing-banned grassland by affecting soil properties and microbial community

A "grazing ban" policy has been implemented in some pastoral areas in China to fence degraded grasslands for restoration. However, fencing increased grazing pressures in unmanaged grasslands. Based on the mechanism of negative edge effect, we investigated whether overgrazing on unmanaged grassland interfered with the restoration of adjacent grazing-banned grassland by affecting soil properties and microbial community using a sample in Hulun Buir of Inner Mongolia, in order to optimize the "grazing ban" policy. Plant and soil were sampled in areas 30 m away from the fence in unmanaged grassland (UM) and in areas 30 m (adjacent to UM) and 30-60 m (not adjacent to UM) away from the fence in the grazing-banned grassland (F-30 m and F-60 m). The species richness and diversity of plant communities and the ASV number of fungal communities significantly decreased in F-30 m and UM, and the Simpson index of the bacterial community significantly decreased in F-30 m compared with F-60 m. The abundance of fungi involved in soil organic matter decomposition significantly decreased and the abundance of stress-resistant bacteria significantly increased, while the abundance of bacteria involved in litter decomposition significantly decreased in UM and F-30 m compared with F-60 m. The simplification of plant communities decreased in soil water and total organic carbon contents can explain the variations of soil microbial communities in both UM and F-30 m compared with F-60 m. The results of PLS-PM show that changes in plant community and soil microbial function guilds in UM may affect those in F-30 m by changing soil water and total organic carbon contents. These results indicate that overgrazing on unmanaged grassland interfered with the restoration of adjacent grazing-banned grassland by affecting soil properties and microbial community. The grazing-banned grasslands should be adjusted periodically in order to avoid negative edge effects.

Herbivory limits success of vegetation restoration globally

Restoring vegetation in degraded ecosystems is an increasingly common practice for promoting biodiversity and ecological function, but successful implementation is hampered by an incomplete understanding of the processes that limit restoration success. By synthesizing terrestrial and aquatic studies globally (2594 experimental tests from 610 articles), we reveal substantial herbivore control of vegetation under restoration. Herbivores at restoration sites reduced vegetation abundance more strongly (by 89%, on average) than those at relatively undegraded sites and suppressed, rather than fostered, plant diversity. These effects were particularly pronounced in regions with higher temperatures and lower precipitation. Excluding targeted herbivores temporarily or introducing their predators improved restoration by magnitudes similar to or greater than those achieved by managing plant competition or facilitation. Thus, managing herbivory is a promising strategy for enhancing vegetation restoration efforts.

Herbivory Rather than Root Competition and Environmental Factors Determines Plant Establishment in Fragmented Forests

In fragmented forests, many factors can affect plant community establishment, including abiotic factors, below-ground root competition, aboveground seed predation, and seedling herbivory. Little is known about the relative effects of biotic and abiotic factors affecting the initial stage of seedling establishment: seed gemmation and early seedling survival. Here, we carried out a root competition exclusion experiment and a herbivory (including seed predation) exclusion experiment on 11 islands in Thousand Island Lake, China, using four native woody plant species that differed in functional traits (e.g., seed mass and dominance). The dominant species on islands showed the highest seedling survival, and there was no significant linear relationship between the proportion of surviving seedlings and island area under either treatment for any species. Compared to the control and excluding root competition treatments, excluding seed predation and herbivory significantly increased seedling survival after controlling for the environmental factors. However, abiotic factors had no effect on early seedling establishment. Our results suggest that seedling regeneration of rare species in fragmented ecosystems may be limited and that seedlings may be more susceptible to predators and herbivores in fragmented ecosystems. These results have significant implications for the conservation of plant diversity in fragmented forests.

Accelerated forest fragmentation leads to critical increase in tropical forest edge area

Large areas of tropical forests have been lost through deforestation, resulting in fragmented forest landscapes. However, the dynamics of forest fragmentation are still unknown, especially the critical forest edge areas, which are sources of carbon emissions due to increased tree mortality. We analyzed the changes in forest fragmentation for the entire tropics using high-resolution forest cover maps. We found that forest edge area increased from 27 to 31% of the total forest area in just 10 years, with the largest increase in Africa. The number of forest fragments increased by 20 million with consequences for connectivity of tropical landscapes. Simulations suggest that ongoing deforestation will further accelerate forest fragmentation. By 2100, 50% of tropical forest area will be at the forest edge, causing additional carbon emissions of up to 500 million MT carbon per year. Thus, efforts to limit fragmentation in the world’s tropical forests are important for climate change mitigation.

Environment shapes the spatial organization of tree diversity in fragmented forests across a human-modified landscape

Biodiversity patterns are shaped by the combination of dispersal, environment, and stochasticity, but how the influence of these drivers changes in fragmented habitats remains poorly understood. We examined patterns and relationships among total (γ) and site-level (α) diversity, and site-to-site variation in composition (β-diversity) of tree communities in structurally contiguous and fragmented tropical rainforests within a human-modified landscape in India's Western Ghats. First, for the entire landscape, we assessed the extent to which habitat type (fragment or contiguous forest), space and environment explained variation in α-diversity and composition. Next, within fragments and contiguous forest, we assessed the relative contribution of spatial proximity, environmental similarity, and their joint effects in explaining β-diversity. We repeated these assessments with β-diversity values corrected for the confounding effects of α- and γ-diversity using null models (β-deviation). Lower γ-diversity of fragments resulted from both lower α- and β-diversity compared to contiguous forests. However, β-deviation did not differ between contiguous forests and fragments. Fragmented and contiguous forest clearly diverged in floristic composition, which was attributable to β-diversity being driven by differences in elevation and MAP. Within fragmented forest, neither space nor environment explained β-diversity, but β-deviation increased with greater elevational differences. In contiguous forests by comparison, environment alone (mainly elevation) explained the most variation in β-diversity and β-deviation of both species' occurrences and abundances. Spatial gradients in environmental conditions played a larger role than dispersal limitation in shaping diversity and composition of tree communities across forest fragments. Thus, location of remnant patches at different elevations was a key factor underlying site-to-site variability in species abundances across fragments. Understanding the environmental characteristics of remnant forests in human-modified landscapes, combined with knowledge of species-environment relationships across different functional groups, would therefore be important considerations for management and restoration planning in human-modified landscapes.

Enemies mediate distance- and density-dependent mortality of tree seeds and seedlings: a meta-analysis of fungicide, insecticide and exclosure studies

Conspecific negative distance- and density-dependence is often assumed to be one of the most important mechanisms controlling forest community assembly and species diversity globally. Plant pathogens, and insect and mammalian herbivores, are the most common natural enemy types that have been implicated in this phenomenon, but their general effects at different plant life stages are still unclear. Here, we conduct a meta-analysis of studies that involved robust manipulative experiments, using fungicides, insecticides and exclosures, to assess the contributions of different natural enemy types to distance- and density-dependent effects at seed and seedling stages. We found that distance- and density-dependent mortality caused by natural enemies was most likely at the seedling stage and was greater at higher mean annual temperatures. Conspecific negative distance- and density-dependence at the seedling stage is significantly weakened when fungicides were applied. By contrast, negative conspecific distance- and density-dependence is not a general pattern at the seed stage. High seed mass reduced distance- and density-dependent mortality at the seed stage. Seed studies excluding only large mammals found significant negative conspecific distance-dependent mortality, but exclusion of all mammals resulted in a non-significant effect of conspecifics. Our study suggests that plant pathogens are a major cause of distance- and density-dependent mortality at the seedling stage, while the impacts of herbivores on seedlings have been understudied. At the seed stage, large and small mammals, respectively, weaken and enhance negative conspecific distance-dependent mortality. Future research should identify specific agents of mortality, investigate the interactions among different enemy types and assess how global change may affect natural enemies and thus influence the strength of conspecific distance- and density-dependence.

Limited contributions of plant pathogens to density-dependent seedling mortality of mast fruiting Bornean trees

Fungal pathogens are implicated in driving tropical plant diversity by facilitating strong, negative density-dependent mortality of conspecific seedlings (C-NDD). Assessment of the role of fungal pathogens in mediating coexistence derives from relatively few tree species and predominantly the Neotropics, limiting our understanding of their role in maintaining hyper-diversity in many tropical forests. A key question is whether fungal pathogen-mediated C-NDD seedling mortality is ubiquitous across diverse plant communities. Using a manipulative shadehouse experiment, we tested the role of fungal pathogens in mediating C-NDD seedling mortality of eight mast fruiting Bornean trees, typical of the species-rich forests of South East Asia. We demonstrate species-specific responses of seedlings to fungicide and density treatments, generating weak negative density-dependent mortality. Overall seedling mortality was low and likely insufficient to promote overall community diversity. Although conducted in the same way as previous studies, we find little evidence that fungal pathogens play a substantial role in determining patterns of seedling mortality in a SE Asian mast fruiting forest, questioning our understanding of how Janzen-Connell mechanisms structure the plant communities of this globally important forest type.

Edge effects alter the role of fungi and insects in mediating functional composition and diversity of seedling recruits in a fragmented tropical forest

BACKGROUND AND AIMS

In fragmented forests, proximity to forest edges can favour the establishment of resource-acquisitive species over more resource-conservative species. During seedling recruitment, resource-acquisitive species may benefit from either higher light availability or weaker top-down effects of natural enemies. The relative importance of light and enemies for recruitment has seldom been examined with respect to edge effects.

METHODS

In a human-modified wet tropical forest in India, we first examined how functional traits indicative of resource-acquisitive vs. resource-conservative strategies, i.e. specific leaf area (SLA), leaf dry matter content, wood density and seed size, explained interspecific differences in densities of seedling recruits with distance to the forest edge. Then, we checked whether fungicide and insecticide treatments and canopy openness (proxy for light availability) explained edge effects on trait-mediated changes in seedling density. Finally, we examined whether light availability and natural enemy activity explained edge effects on functional diversity of seedling recruits.

KEY RESULTS

Up to 60 m from edges, recruit densities increased with decreasing seed size, but not at 90-100 m, where recruit densities increased with higher SLA. Trait-mediated variation in recruit densities changed with pesticides only at 90-100 m: compared with control plots, fungicide increased recruit densities for low SLA species and insecticide increased smaller seeded species. For SLA, wood density and seed size, functional diversity of recruits was higher at 90-100 m than at 0-5 m. At 90-100 m, fungicide decreased functional diversity for SLA and insecticide reduced seed size diversity compared with control plots. Canopy openness explained neither variation in recruit density in relation to traits nor functional diversity.

CONCLUSIONS

Altered biotic interactions can mediate local changes to trait composition and functional diversity during seedling recruitment in forest fragments, hinting at downstream effects on the structure and function of human-modified forests.

Resistance Genes Affect How Pathogens Maintain Plant Abundance and Diversity

AbstractSpecialized pathogens are thought to maintain plant community diversity; however, most ecological studies treat pathogens as a black box. Here we develop a theoretical model to test how the impact of specialized pathogens changes when plant resistance genes (R-genes) mediate susceptibility. This work synthesizes two major hypotheses: the gene-for-gene model of pathogen resistance and the Janzen-Connell hypothesis of pathogen-mediated coexistence. We examine three scenarios. First, R-genes do not affect seedling survival; in this case, pathogens promote diversity. Second, seedlings are protected from pathogens when their R-gene alleles and susceptibility differ from those of nearby conspecific adults, thereby reducing transmission. If resistance is not costly, pathogens are less able to promote diversity because populations with low R-gene diversity suffer higher mortality, putting those populations at a disadvantage and potentially causing their exclusion. R-gene diversity may also be reduced during population bottlenecks, creating a priority effect. Third, when R-genes affect survival but resistance is costly, populations can avoid extinction by losing resistance alleles, as they cease paying a cost that is unneeded. Thus, the impact pathogens can have on tree diversity depends on the mechanism of plant-pathogen interactions. Future empirical studies should examine which of these scenarios most closely reflects the real world.

Community context for mechanisms of disease dilution: insights from linking epidemiology and plant-soil feedback theory

In many natural systems, diverse host communities can reduce disease risk, though less is known about the mechanisms driving this "dilution effect." We relate feedback theory, which focuses on pathogen-mediated coexistence, to mechanisms of dilution derived from epidemiological models, with the central goal of gaining insights into host-pathogen interactions in a community context. We first compare the origin, structure, and application of epidemiological and feedback models. We then explore the mechanisms of dilution, which are grounded in single-pathogen, single-host epidemiological models, from the perspective of feedback theory. We also draw on feedback theory to examine how coinfecting pathogens, and pathogens that vary along a host specialist-generalist continuum, apply to dilution theory. By identifying synergies among the feedback and epidemiological approaches, we reveal ways in which organisms occupying different trophic levels contribute to diversity-disease relationships. Additionally, using feedbacks to distinguish dilution in disease incidence from dilution in the net effect of disease on host fitness allows us to articulate conditions under which definitions of dilution may not align. After ascribing dilution mechanisms to macro- or microorganisms, we propose ways in which each contributes to diversity-disease and productivity-diversity relationships. Our analyses lead to predictions that can guide future research efforts.

Tree species traits affect which natural enemies drive the Janzen-Connell effect in a temperate forest

A prominent tree species coexistence mechanism suggests host-specific natural enemies inhibit seedling recruitment at high conspecific density (negative conspecific density dependence). Natural-enemy-mediated conspecific density dependence affects numerous tree populations, but its strength varies substantially among species. Understanding how conspecific density dependence varies with species’ traits and influences the dynamics of whole communities remains a challenge. Using a three-year manipulative community-scale experiment in a temperate forest, we show that plant-associated fungi, and to a lesser extent insect herbivores, reduce seedling recruitment and survival at high adult conspecific density. Plant-associated fungi are primarily responsible for reducing seedling recruitment near conspecific adults in ectomycorrhizal and shade-tolerant species. Insects, in contrast, primarily inhibit seedling recruitment of shade-intolerant species near conspecific adults. Our results suggest that natural enemies drive conspecific density dependence in this temperate forest and that which natural enemies are responsible depends on the mycorrhizal association and shade tolerance of tree species.

The Janzen-Connell hypothesis posits that seedlings may be less likely to establish near conspecifics due to shared natural enemies. Here, Jia et al. show that tree species traits determine whether fungal pathogens or insect herbivores inhibit seedling recruitment and survival in a temperate forest.

Edge effects reduce α-diversity but not β-diversity during community assembly in a human-modified tropical forest

Edge effects can alter the spatial organization of diversity in fragmented habitats. For tropical forests, however, there has been large variation in the strength and direction of such effects reported by different studies. For long-lived organisms like trees, one reason for inconsistent patterns might be due to most studies having examined patterns of diversity and compositional variation in older life stages that bear the legacy of a forest past. Younger life stages can reveal ongoing processes of assembly, but multi-stage examinations are rare. For seedling, sapling, and adult life stages of trees in a human-modified wet tropical forest in the Western Ghats Biodiversity Hotspot (India), we examined how proximity to forest edges (edge influence) modified the spatial organization of diversity. Specifically, for each life stage we tested whether edge influence led to loss of α- and γ-diversity and decreased β-diversity in this landscape. We found lower α- and γ-diversity closer to forest edges, but only for seedlings. Seedling composition at 90-100 m from forest edges diverged from composition of sites within 60 m, suggesting that edge influence restricted the recruitment of some species to interior sites. In contrast, β-diversity was greater near edges than interior forest for all life stages and most prominently for seedlings. Furthermore, β-diversity at edges was primarily driven by species turnover, suggesting either marked species-environment associations or dispersal limitation. Low turnover at 90-100 m implies that β-diversity arose from stochastic fluctuations in occurrences and abundances of the same species set. Overall, we find that high β-diversity structured spatial patterns of diversity near edges, but recruitment bottlenecks are likely to reduce alpha diversity of forest fragments. Our results also corroborate the need to maintain sufficiently large areas of tropical forest free from edge effects to avoid the loss of interior forest species. To improve landscape-scale diversity of fragmented landscapes, restoration efforts should focus on recovery of species that are unable to regenerate near forest edges.

Bias in the detection of negative density dependence in plant communities

Regression dilution is a statistical inference bias that causes underestimation of the strength of dependency between two variables when the predictors are error-prone proxies (EPPs). EPPs are widely used in plant community studies focused on negative density-dependence (NDD) to quantify competitive interactions. Because of the nature of the bias, conspecific NDD is often overestimated in recruitment analyses, and in some cases, can be erroneously detected when absent. In contrast, for survival analyses, EPPs typically cause NDD to be underestimated, but underestimation is more severe for abundant species and for heterospecific effects, thereby generating spurious negative relationships between the strength of NDD and the abundances of con- and heterospecifics. This can explain why many studies observed rare species to suffer more severely from conspecific NDD, and heterospecific effects to be disproportionally smaller than conspecific effects. In general, such species-dependent bias is often related to traits associated with likely mechanisms of NDD, which creates false patterns and complicates the ecological interpretation of the analyses. Classic examples taken from literature and simulations demonstrate that this bias has been pervasive, which calls into question the emerging paradigm that intraspecific competition has been demonstrated by direct field measurements to be generally stronger than interspecific competition.

Distance-dependent seed‒seedling transition in the tree Castanopsis sclerophylla is altered by fragment size

Negative distance-dependence of conspecific seedling mortality (NDisDM) is a crucial stabilizing force that regulates plant diversity, but it remains unclear whether and how fragment size shifts the strength of NDisDM. Here, we surveyed the seed‒seedling transition process for a total of 25,500 seeds of a local dominant tree species on islands of various sizes in a reservoir and on the nearby mainland. We found significant NDisDM on the mainland and large and medium islands, with significantly stronger NDisDM on medium islands. However, positive distance-dependent mortality was detected on small islands. Changes in distance-dependence were critically driven by both rodent attack and pathogen infestation, which were significantly affected by fragment size. Our results emphasize the necessity of incorporating the effects of fragment size on distance-dependent regeneration of dominant plant species into the existing frameworks for better predicting the consequences of habitat fragmentation.