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Varga L, Moca VV, Molnár B, Perez-Cervera L, Selim MK, Díaz-Parra A, Moratal D, Péntek B, Sommer WH, Mureșan RC, Canals S, Ercsey-Ravasz M. Brain dynamics supported by a hierarchy of complex correlation patterns defining a robust functional architecture. Cell Syst 2024; 15:770-786.e5. [PMID: 39142285 DOI: 10.1016/j.cels.2024.07.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 11/01/2023] [Accepted: 07/22/2024] [Indexed: 08/16/2024]
Abstract
Functional magnetic resonance imaging (fMRI) provides insights into cognitive processes with significant clinical potential. However, delays in brain region communication and dynamic variations are often overlooked in functional network studies. We demonstrate that networks extracted from fMRI cross-correlation matrices, considering time lags between signals, show remarkable reliability when focusing on statistical distributions of network properties. This reveals a robust brain functional connectivity pattern, featuring a sparse backbone of strong 0-lag correlations and weaker links capturing coordination at various time delays. This dynamic yet stable network architecture is consistent across rats, marmosets, and humans, as well as in electroencephalogram (EEG) data, indicating potential universality in brain dynamics. Second-order properties of the dynamic functional network reveal a remarkably stable hierarchy of functional correlations in both group-level comparisons and test-retest analyses. Validation using alcohol use disorder fMRI data uncovers broader shifts in network properties than previously reported, demonstrating the potential of this method for identifying disease biomarkers.
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Affiliation(s)
- Levente Varga
- Faculty of Mathematics and Computer Science, Babeș-Bolyai University, Cluj-Napoca, Romania; Faculty of Physics, Babeș-Bolyai University, Cluj-Napoca, Romania; Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania
| | - Vasile V Moca
- Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania
| | - Botond Molnár
- Faculty of Mathematics and Computer Science, Babeș-Bolyai University, Cluj-Napoca, Romania; Faculty of Physics, Babeș-Bolyai University, Cluj-Napoca, Romania; Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania
| | - Laura Perez-Cervera
- Instituto de Neurociencias, Consejo Superior de Investigaciones Científicas, Universidad Miguel Hernández, San Juan de Alicante, Spain
| | - Mohamed Kotb Selim
- Instituto de Neurociencias, Consejo Superior de Investigaciones Científicas, Universidad Miguel Hernández, San Juan de Alicante, Spain
| | - Antonio Díaz-Parra
- Center for Biomaterials and Tissue Engineering, Universitat Politècnica de València, Valencia, Spain
| | - David Moratal
- Center for Biomaterials and Tissue Engineering, Universitat Politècnica de València, Valencia, Spain
| | - Balázs Péntek
- Faculty of Physics, Babeș-Bolyai University, Cluj-Napoca, Romania
| | - Wolfgang H Sommer
- Institute of Psychopharmacology and Clinic for Addiction Medicine, Central Institute of Mental Health, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany
| | - Raul C Mureșan
- Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania; STAR-UBB Institute, Babeș-Bolyai University, Cluj-Napoca, Romania.
| | - Santiago Canals
- Instituto de Neurociencias, Consejo Superior de Investigaciones Científicas, Universidad Miguel Hernández, San Juan de Alicante, Spain.
| | - Maria Ercsey-Ravasz
- Faculty of Physics, Babeș-Bolyai University, Cluj-Napoca, Romania; Transylvanian Institute of Neuroscience, Cluj-Napoca, Romania.
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2
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Zhu Q, Li S, Meng X, Xu Q, Zhang Z, Shao W, Zhang D. Spatio-Temporal Graph Hubness Propagation Model for Dynamic Brain Network Classification. IEEE TRANSACTIONS ON MEDICAL IMAGING 2024; 43:2381-2394. [PMID: 38319754 DOI: 10.1109/tmi.2024.3363014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
Dynamic brain network has the advantage over static brain network in characterizing the variation pattern of functional brain connectivity, and it has attracted increasing attention in brain disease diagnosis. However, most of the existing dynamic brain networks analysis methods rely on extracting features from independent brain networks divided by sliding windows, making them hard to reveal the high-order dynamic evolution laws of functional brain networks. Additionally, they cannot effectively extract the spatio-temporal topology features in dynamic brain networks. In this paper, we propose to use optimal transport (OT) theory to capture the topology evolution of the dynamic brain networks, and develop a multi-channel spatio-temporal graph convolutional network that collaboratively extracts the temporal and spatial features from the evolution networks. Specifically, we first adaptively evaluate the graph hubness of brain regions in the brain network of each time window, which comprehensively models information transmission among multiple brain regions. Second, the hubness propagation information across adjacent time windows is captured by optimal transport, describing high-order topology evolution of dynamic brain networks. Moreover, we develop a spatio-temporal graph convolutional network with attention mechanism to collaboratively extract the intrinsic temporal and spatial topology information from the above networks. Finally, the multi-layer perceptron is adopted for classifying the dynamic brain network. The extensive experiment on the collected epilepsy dataset and the public ADNI dataset show that our proposed method not only outperforms several state-of-the-art methods in brain disease diagnosis, but also reveals the key dynamic alterations of brain connectivities between patients and healthy controls.
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3
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Quan Z, Li Y, Wang S. Multi-timescale neuromodulation strategy for closed-loop deep brain stimulation in Parkinson's disease. J Neural Eng 2024; 21:036006. [PMID: 38653252 DOI: 10.1088/1741-2552/ad4210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Accepted: 04/23/2024] [Indexed: 04/25/2024]
Abstract
Objective.Beta triggered closed-loop deep brain stimulation (DBS) shows great potential for improving the efficacy while reducing side effect for Parkinson's disease. However, there remain great challenges due to the dynamics and stochasticity of neural activities. In this study, we aimed to tune the amplitude of beta oscillations with different time scales taking into account influence of inherent variations in the basal ganglia-thalamus-cortical circuit.Approach. A dynamic basal ganglia-thalamus-cortical mean-field model was established to emulate the medication rhythm. Then, a dynamic target model was designed to embody the multi-timescale dynamic of beta power with milliseconds, seconds and minutes. Moreover, we proposed a closed-loop DBS strategy based on a proportional-integral-differential (PID) controller with the dynamic control target. In addition, the bounds of stimulation amplitude increments and different parameters of the dynamic target were considered to meet the clinical constraints. The performance of the proposed closed-loop strategy, including beta power modulation accuracy, mean stimulation amplitude, and stimulation variation were calculated to determine the PID parameters and evaluate neuromodulation performance in the computational dynamic mean-field model.Main results. The Results show that the dynamic basal ganglia-thalamus-cortical mean-field model simulated the medication rhythm with the fasted and the slowest rate. The dynamic control target reflected the temporal variation in beta power from milliseconds to minutes. With the proposed closed-loop strategy, the beta power tracked the dynamic target with a smoother stimulation sequence compared with closed-loop DBS with the constant target. Furthermore, the beta power could be modulated to track the control target under different long-term targets, modulation strengths, and bounds of the stimulation increment.Significance. This work provides a new method of closed-loop DBS for multi-timescale beta power modulation with clinical constraints.
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Affiliation(s)
- Zhaoyu Quan
- Academy for Engineering and Technology, Fudan University, Shanghai, People's Republic of China
- Shanghai Engineering Research Center of AI & Robotics, Fudan University, Shanghai, People's Republic of China
- Engineering Research Center of AI & Robotics, Ministry of Education, Fudan University, Shanghai, People's Republic of China
| | - Yan Li
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, People's Republic of China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Shanghai, Ministry of Education, People's Republic of China
- MOE Frontiers Center for Brain Science, Fudan University, Shanghai, People's Republic of China
- Zhangjiang Fudan International Innovation Center, Shanghai, People's Republic of China
| | - Shouyan Wang
- Shanghai Engineering Research Center of AI & Robotics, Fudan University, Shanghai, People's Republic of China
- Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, People's Republic of China
- Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Shanghai, Ministry of Education, People's Republic of China
- MOE Frontiers Center for Brain Science, Fudan University, Shanghai, People's Republic of China
- Zhangjiang Fudan International Innovation Center, Shanghai, People's Republic of China
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4
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Peng Y, Bjelde A, Aceituno PV, Mittermaier FX, Planert H, Grosser S, Onken J, Faust K, Kalbhenn T, Simon M, Radbruch H, Fidzinski P, Schmitz D, Alle H, Holtkamp M, Vida I, Grewe BF, Geiger JRP. Directed and acyclic synaptic connectivity in the human layer 2-3 cortical microcircuit. Science 2024; 384:338-343. [PMID: 38635709 DOI: 10.1126/science.adg8828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 03/12/2024] [Indexed: 04/20/2024]
Abstract
The computational capabilities of neuronal networks are fundamentally constrained by their specific connectivity. Previous studies of cortical connectivity have mostly been carried out in rodents; whether the principles established therein also apply to the evolutionarily expanded human cortex is unclear. We studied network properties within the human temporal cortex using samples obtained from brain surgery. We analyzed multineuron patch-clamp recordings in layer 2-3 pyramidal neurons and identified substantial differences compared with rodents. Reciprocity showed random distribution, synaptic strength was independent from connection probability, and connectivity of the supragranular temporal cortex followed a directed and mostly acyclic graph topology. Application of these principles in neuronal models increased dimensionality of network dynamics, suggesting a critical role for cortical computation.
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Affiliation(s)
- Yangfan Peng
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Antje Bjelde
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Pau Vilimelis Aceituno
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057 Zürich, Switzerland
| | - Franz X Mittermaier
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Henrike Planert
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Sabine Grosser
- Institute for Integrative Neuroanatomy, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Julia Onken
- Department of Neurosurgery, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Katharina Faust
- Department of Neurosurgery, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Thilo Kalbhenn
- Department of Neurosurgery (Evangelisches Klinikum Bethel), Medical School, Bielefeld University, 33617 Bielefeld, Germany
| | - Matthias Simon
- Department of Neurosurgery (Evangelisches Klinikum Bethel), Medical School, Bielefeld University, 33617 Bielefeld, Germany
| | - Helena Radbruch
- Department of Neuropathology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Pawel Fidzinski
- Clinical Study Center, Berlin Institute of Health at Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany
- German Center for Neurodegenerative Diseases (DZNE) Berlin, 10117 Berlin, Germany
| | - Dietmar Schmitz
- German Center for Neurodegenerative Diseases (DZNE) Berlin, 10117 Berlin, Germany
- Neuroscience Research Center, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Henrik Alle
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Martin Holtkamp
- Epilepsy-Center Berlin-Brandenburg, Department of Neurology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Imre Vida
- Institute for Integrative Neuroanatomy, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
| | - Benjamin F Grewe
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, 8057 Zürich, Switzerland
| | - Jörg R P Geiger
- Institute of Neurophysiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt Universität zu Berlin, 10117 Berlin, Germany
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5
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Osaki T, Duenki T, Chow SYA, Ikegami Y, Beaubois R, Levi T, Nakagawa-Tamagawa N, Hirano Y, Ikeuchi Y. Complex activity and short-term plasticity of human cerebral organoids reciprocally connected with axons. Nat Commun 2024; 15:2945. [PMID: 38600094 PMCID: PMC11006899 DOI: 10.1038/s41467-024-46787-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 03/11/2024] [Indexed: 04/12/2024] Open
Abstract
An inter-regional cortical tract is one of the most fundamental architectural motifs that integrates neural circuits to orchestrate and generate complex functions of the human brain. To understand the mechanistic significance of inter-regional projections on development of neural circuits, we investigated an in vitro neural tissue model for inter-regional connections, in which two cerebral organoids are connected with a bundle of reciprocally extended axons. The connected organoids produced more complex and intense oscillatory activity than conventional or directly fused cerebral organoids, suggesting the inter-organoid axonal connections enhance and support the complex network activity. In addition, optogenetic stimulation of the inter-organoid axon bundles could entrain the activity of the organoids and induce robust short-term plasticity of the macroscopic circuit. These results demonstrated that the projection axons could serve as a structural hub that boosts functionality of the organoid-circuits. This model could contribute to further investigation on development and functions of macroscopic neuronal circuits in vitro.
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Affiliation(s)
- Tatsuya Osaki
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Institute for AI and Beyond, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan
| | - Tomoya Duenki
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Institute for AI and Beyond, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan
- Department of Chemistry and Biotechnology, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan
- LIMMS/CNRS, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan
| | - Siu Yu A Chow
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Institute for AI and Beyond, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan
| | - Yasuhiro Ikegami
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Institute for AI and Beyond, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan
| | - Romain Beaubois
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- LIMMS/CNRS, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan
- IMS Laboratory, UMR5218, University of Bordeaux, Talence, France
| | - Timothée Levi
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- LIMMS/CNRS, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan
- IMS Laboratory, UMR5218, University of Bordeaux, Talence, France
| | - Nao Nakagawa-Tamagawa
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Department of Physiology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima, Japan
| | - Yoji Hirano
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan
- Department of Neuropsychiatry, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan
- Department of Psychiatry, Division of Clinical Neuroscience, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan
| | - Yoshiho Ikeuchi
- Institute of Industrial Science, The University of Tokyo, Meguro, Tokyo, 153-8505, Japan.
- Institute for AI and Beyond, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan.
- Department of Chemistry and Biotechnology, The University of Tokyo, Bunkyo, Tokyo, 113-8655, Japan.
- LIMMS/CNRS, Institute of Industrial Science, The University of Tokyo, Tokyo, Japan.
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6
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Luo X, Li M, Zeng J, Dai Z, Cui Z, Zhu M, Tian M, Wu J, Han Z. Mechanisms underlying category learning in the human ventral occipito-temporal cortex. Neuroimage 2024; 287:120520. [PMID: 38242489 DOI: 10.1016/j.neuroimage.2024.120520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 01/07/2024] [Accepted: 01/17/2024] [Indexed: 01/21/2024] Open
Abstract
The human ventral occipito-temporal cortex (VOTC) has evolved into specialized regions that process specific categories, such as words, tools, and animals. The formation of these areas is driven by bottom-up visual and top-down nonvisual experiences. However, the specific mechanisms through which top-down nonvisual experiences modulate category-specific regions in the VOTC are still unknown. To address this question, we conducted a study in which participants were trained for approximately 13 h to associate three sets of novel meaningless figures with different top-down nonvisual features: the wordlike category with word features, the non-wordlike category with nonword features, and the visual familiarity condition with no nonvisual features. Pre- and post-training functional MRI (fMRI) experiments were used to measure brain activity during stimulus presentation. Our results revealed that training induced a categorical preference for the two training categories within the VOTC. Moreover, the locations of two training category-specific regions exhibited a notable overlap. Remarkably, within the overlapping category-specific region, training resulted in a dissociation in activation intensity and pattern between the two training categories. These findings provide important insights into how different nonvisual categorical information is encoded in the human VOTC.
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Affiliation(s)
- Xiangqi Luo
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Mingyang Li
- Key Laboratory for Biomedical Engineering of Ministry of Education, Department of Biomedical Engineering, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou 310027, PR China
| | - Jiahong Zeng
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Zhiyun Dai
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Zhenjiang Cui
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Minhong Zhu
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Mengxin Tian
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Jiahao Wu
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China
| | - Zaizhu Han
- State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing 100875, PR China.
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7
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Zhang P, Sun C, Liu Z, Zhou Q. Phase-amplitude coupling of Go/Nogo task-related neuronal oscillation decreases for humans with insufficient sleep. Sleep 2023; 46:zsad243. [PMID: 37707941 DOI: 10.1093/sleep/zsad243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 08/16/2023] [Indexed: 09/15/2023] Open
Abstract
Phase-amplitude coupling (PAC) across frequency might be associated with the long-range synchronization of brain networks, facilitating the spatiotemporal integration of multiple cell assemblies for information transmission during inhibitory control. However, sleep problems may affect these cortical information transmissions based on cross-frequency PAC, especially when humans work in environments of social isolation. This study aimed to evaluate changes in the theta-beta/gamma PAC of task-related electroencephalography (EEG) for humans with insufficient sleep. Here, we monitored the EEG signals of 60 healthy volunteers and 18 soldiers in the normal environment, performing a Go/Nogo task. Soldiers also participated in the same test in isolated cabins. These measures demonstrated theta-beta PACs between the frontal and central-parietal, and robust theta-gamma PACs between the frontal and occipital cortex. Unfortunately, these PACs significantly decreased when humans experienced insufficient sleep, which was positively correlated with the behavioral performance of inhibitory control. The evaluation of theta-beta/gamma PAC of Go/Nogo task-related EEG is necessary to help understand the different influences of sleep problems in humans.
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Affiliation(s)
- Peng Zhang
- School of Psychology, Beijing Key Laboratory of Learning and Cognition, Capital Normal University, Beijing, China
| | - Chuancai Sun
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China
- The First Affiliated Hospital of Shandong First Medical University, Nephrology, Jinan, China
| | - Zhongqi Liu
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China
- The First Affiliated Hospital of Shandong First Medical University, Nephrology, Jinan, China
| | - Qianxiang Zhou
- School of Biological Science and Medical Engineering, Beihang University, Beijing, China
- The First Affiliated Hospital of Shandong First Medical University, Nephrology, Jinan, China
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8
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Pham TQ, Matsui T, Chikazoe J. Evaluation of the Hierarchical Correspondence between the Human Brain and Artificial Neural Networks: A Review. BIOLOGY 2023; 12:1330. [PMID: 37887040 PMCID: PMC10604784 DOI: 10.3390/biology12101330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/22/2023] [Accepted: 10/10/2023] [Indexed: 10/28/2023]
Abstract
Artificial neural networks (ANNs) that are heavily inspired by the human brain now achieve human-level performance across multiple task domains. ANNs have thus drawn attention in neuroscience, raising the possibility of providing a framework for understanding the information encoded in the human brain. However, the correspondence between ANNs and the brain cannot be measured directly. They differ in outputs and substrates, neurons vastly outnumber their ANN analogs (i.e., nodes), and the key algorithm responsible for most of modern ANN training (i.e., backpropagation) is likely absent from the brain. Neuroscientists have thus taken a variety of approaches to examine the similarity between the brain and ANNs at multiple levels of their information hierarchy. This review provides an overview of the currently available approaches and their limitations for evaluating brain-ANN correspondence.
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Affiliation(s)
| | - Teppei Matsui
- Graduate School of Brain Science, Doshisha University, Kyoto 610-0321, Japan
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9
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Peelen MV, Downing PE. Testing cognitive theories with multivariate pattern analysis of neuroimaging data. Nat Hum Behav 2023; 7:1430-1441. [PMID: 37591984 PMCID: PMC7616245 DOI: 10.1038/s41562-023-01680-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 07/12/2023] [Indexed: 08/19/2023]
Abstract
Multivariate pattern analysis (MVPA) has emerged as a powerful method for the analysis of functional magnetic resonance imaging, electroencephalography and magnetoencephalography data. The new approaches to experimental design and hypothesis testing afforded by MVPA have made it possible to address theories that describe cognition at the functional level. Here we review a selection of studies that have used MVPA to test cognitive theories from a range of domains, including perception, attention, memory, navigation, emotion, social cognition and motor control. This broad view reveals properties of MVPA that make it suitable for understanding the 'how' of human cognition, such as the ability to test predictions expressed at the item or event level. It also reveals limitations and points to future directions.
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Affiliation(s)
- Marius V Peelen
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands.
| | - Paul E Downing
- Cognitive Neuroscience Institute, Department of Psychology, Bangor University, Bangor, UK.
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10
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Rosenberg AM, Saggar M, Monzel AS, Devine J, Rogu P, Limoges A, Junker A, Sandi C, Mosharov EV, Dumitriu D, Anacker C, Picard M. Brain mitochondrial diversity and network organization predict anxiety-like behavior in male mice. Nat Commun 2023; 14:4726. [PMID: 37563104 PMCID: PMC10415311 DOI: 10.1038/s41467-023-39941-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 07/04/2023] [Indexed: 08/12/2023] Open
Abstract
The brain and behavior are under energetic constraints, limited by mitochondrial energy transformation capacity. However, the mitochondria-behavior relationship has not been systematically studied at a brain-wide scale. Here we examined the association between multiple features of mitochondrial respiratory chain capacity and stress-related behaviors in male mice with diverse behavioral phenotypes. Miniaturized assays of mitochondrial respiratory chain enzyme activities and mitochondrial DNA (mtDNA) content were deployed on 571 samples across 17 brain areas, defining specific patterns of mito-behavior associations. By applying multi-slice network analysis to our brain-wide mitochondrial dataset, we identified three large-scale networks of brain areas with shared mitochondrial signatures. A major network composed of cortico-striatal areas exhibited the strongest mitochondria-behavior correlations, accounting for up to 50% of animal-to-animal behavioral differences, suggesting that this mito-based network is functionally significant. The mito-based brain networks also overlapped with regional gene expression and structural connectivity, and exhibited distinct molecular mitochondrial phenotype signatures. This work provides convergent multimodal evidence anchored in enzyme activities, gene expression, and animal behavior that distinct, behaviorally-relevant mitochondrial phenotypes exist across the male mouse brain.
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Affiliation(s)
- Ayelet M Rosenberg
- Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Manish Saggar
- Department of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA
| | - Anna S Monzel
- Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Jack Devine
- Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Peter Rogu
- Columbia University Institute for Developmental Sciences, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Aaron Limoges
- Department of Biological Sciences, Columbia University, New York, NY, USA
- Division of Systems Neuroscience, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Alex Junker
- Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Carmen Sandi
- Brain Mind Institute, Ecole Polytechnique Federal de Lausanne (EPFL), Lausanne, Switzerland
| | - Eugene V Mosharov
- Division of Molecular Therapeutics, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
- New York State Psychiatric Institute, New York, NY, USA
| | - Dani Dumitriu
- Columbia University Institute for Developmental Sciences, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
- Department of Pediatrics, Columbia University Irving Medical Center, New York, NY, USA
- Division of Developmental Neuroscience, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
| | - Christoph Anacker
- Columbia University Institute for Developmental Sciences, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
- Division of Systems Neuroscience, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA
- New York State Psychiatric Institute, New York, NY, USA
| | - Martin Picard
- Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA.
- New York State Psychiatric Institute, New York, NY, USA.
- Department of Neurology, H. Houston Merritt Center, Columbia Translational Neuroscience Initiative, Columbia University Irving Medical Center, New York, NY, USA.
- Robert N Butler Columbia Aging Center, Columbia University Mailman School of Public Health, New York, NY, USA.
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11
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Sundiang M, Hatsopoulos NG, MacLean JN. Dynamic structure of motor cortical neuron coactivity carries behaviorally relevant information. Netw Neurosci 2023; 7:661-678. [PMID: 37397877 PMCID: PMC10312288 DOI: 10.1162/netn_a_00298] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 12/02/2022] [Indexed: 01/28/2024] Open
Abstract
Skillful, voluntary movements are underpinned by computations performed by networks of interconnected neurons in the primary motor cortex (M1). Computations are reflected by patterns of coactivity between neurons. Using pairwise spike time statistics, coactivity can be summarized as a functional network (FN). Here, we show that the structure of FNs constructed from an instructed-delay reach task in nonhuman primates is behaviorally specific: Low-dimensional embedding and graph alignment scores show that FNs constructed from closer target reach directions are also closer in network space. Using short intervals across a trial, we constructed temporal FNs and found that temporal FNs traverse a low-dimensional subspace in a reach-specific trajectory. Alignment scores show that FNs become separable and correspondingly decodable shortly after the Instruction cue. Finally, we observe that reciprocal connections in FNs transiently decrease following the Instruction cue, consistent with the hypothesis that information external to the recorded population temporarily alters the structure of the network at this moment.
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Affiliation(s)
- Marina Sundiang
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
| | - Nicholas G. Hatsopoulos
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
- University of Chicago Neuroscience Institute, Chicago, IL, USA
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA
| | - Jason N. MacLean
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, USA
- University of Chicago Neuroscience Institute, Chicago, IL, USA
- Department of Neurobiology, University of Chicago, Chicago, IL, USA
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12
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George VK, Gupta A, Silva GA. Identifying Steady State in the Network Dynamics of Spiking Neural Networks. Heliyon 2023; 9:e13913. [PMID: 36967881 PMCID: PMC10036509 DOI: 10.1016/j.heliyon.2023.e13913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 12/15/2022] [Accepted: 02/15/2023] [Indexed: 03/04/2023] Open
Abstract
Analysis of the dynamics of complex networks can provide valuable information. For example, the dynamics can be used to characterize and differentiate between different network inputs and configurations. However, without quantitatively delineating the network's dynamic regimes, analysis of the network's dynamics is based on heuristics and qualitative signatures of transient or steady-state regimes. This is not ideal because interesting phenomena can occur during the transient regime, steady-state regime, or at the transition between the two dynamic regimes. Moreover, for simulated and observed systems, precise knowledge of the network's dynamical regime is imperative when considering metrics on minimal mathematical descriptions of the dynamics, otherwise either too much or too little data is analyzed. Here, we develop quantitative methods to ascertain the starting point and period of steady-state network activity. Using the precise knowledge of the network's dynamic regimes, we build minimal representations of the network dynamics that form the basis for future work. We show applications of our techniques on idealized signals and on the dynamics of a biologically inspired spiking neural network.
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13
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Zhang P, Yan J, Liu Z, Zhou Q. Impeded frontal-occipital communications during Go/Nogo tasks in humans owing to mental workload. Behav Brain Res 2023; 438:114182. [PMID: 36309243 DOI: 10.1016/j.bbr.2022.114182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2022] [Revised: 10/24/2022] [Accepted: 10/25/2022] [Indexed: 12/05/2022]
Abstract
Human brains rely on oscillatory coupling mechanisms for regulating access to prefrontal cognitive resources, dynamically communicating between the frontal and remote cortex. We worry that communications across cortical regions will be impeded when humans in extreme space environments travel with mental load work, affecting the successful completion of missions. Here, we monitored crews of workers performing a Go/Nogo task in space travel, accompanied by acquisitions of electroencephalography (EEG) signals. These data demonstrated that when the target stimulus suddenly changed to the non-target stimulus, an instantaneous communication mechanism between the frontal and occipital cortex was established by theta-gamma phase-amplitude coupling (PAC). However, this frontal-occipital communication was impeded because of the mental workload of space travel. 86 healthy volunteers who participated in the ground imitation further indicated that mental workload caused decoupled theta-gamma PAC during the Go/Nogo task, impeding frontal-occipital communications and behavioral performance. We also found that the degree of theta-gamma PAC coupling in space was significantly lower than on the ground, indicating that mental workload and other hazards worsen the impeded frontal-occipital communications of humans. These results could guide countermeasures for the inadaptability of humans working in spaceflight.
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Affiliation(s)
- Peng Zhang
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, China; Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100191, China
| | - Juan Yan
- China CDC Key Laboratory of Radiological Protection and Nuclear Emergency, National Institute for Radiological Protection, Chinese Center for Disease Control and Prevention, Beijing 100088, China
| | - Zhongqi Liu
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, China; Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100191, China
| | - Qianxiang Zhou
- School of Biological Science and Medical Engineering, Beihang University, Beijing 100191, China; Beijing Advanced Innovation Center for Biomedical Engineering, Beihang University, Beijing 100191, China.
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14
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He X, Caciagli L, Parkes L, Stiso J, Karrer TM, Kim JZ, Lu Z, Menara T, Pasqualetti F, Sperling MR, Tracy JI, Bassett DS. Uncovering the biological basis of control energy: Structural and metabolic correlates of energy inefficiency in temporal lobe epilepsy. SCIENCE ADVANCES 2022; 8:eabn2293. [PMID: 36351015 PMCID: PMC9645718 DOI: 10.1126/sciadv.abn2293] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 09/22/2022] [Indexed: 05/11/2023]
Abstract
Network control theory is increasingly used to profile the brain's energy landscape via simulations of neural dynamics. This approach estimates the control energy required to simulate the activation of brain circuits based on structural connectome measured using diffusion magnetic resonance imaging, thereby quantifying those circuits' energetic efficiency. The biological basis of control energy, however, remains unknown, hampering its further application. To fill this gap, investigating temporal lobe epilepsy as a lesion model, we show that patients require higher control energy to activate the limbic network than healthy volunteers, especially ipsilateral to the seizure focus. The energetic imbalance between ipsilateral and contralateral temporolimbic regions is tracked by asymmetric patterns of glucose metabolism measured using positron emission tomography, which, in turn, may be selectively explained by asymmetric gray matter loss as evidenced in the hippocampus. Our investigation provides the first theoretical framework unifying gray matter integrity, metabolism, and energetic generation of neural dynamics.
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Affiliation(s)
- Xiaosong He
- Department of Psychology, School of Humanities and Social Sciences, University of Science and Technology of China, Hefei, Anhui, China
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Lorenzo Caciagli
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
- UCL Queen Square Institute of Neurology, Queen Square, London, UK
- MRI Unit, Epilepsy Society, Chesham Lane, Chalfont St Peter, Buckinghamshire, UK
| | - Linden Parkes
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Jennifer Stiso
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Teresa M. Karrer
- Personalized Health Care, Product Development, F. Hoffmann-La Roche Ltd., Basel, Switzerland
| | - Jason Z. Kim
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Zhixin Lu
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Tommaso Menara
- Department of Mechanical and Aerospace Engineering, University of California, San Diego, San Diego, CA, USA
| | - Fabio Pasqualetti
- Department of Mechanical Engineering, University of California, Riverside, Riverside, CA, USA
| | | | - Joseph I. Tracy
- Department of Neurology, Thomas Jefferson University, Philadelphia, PA, USA
| | - Dani S. Bassett
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA, USA
- Departments of Electrical and Systems Engineering, Physics and Astronomy, Psychiatry, and Neurology, University of Pennsylvania, Philadelphia, PA, USA
- Santa Fe Institute, Santa Fe, NM, USA
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15
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Cost function for low-dimensional manifold topology assessment. Sci Rep 2022; 12:14496. [PMID: 36008473 PMCID: PMC9411209 DOI: 10.1038/s41598-022-18655-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 08/17/2022] [Indexed: 12/02/2022] Open
Abstract
In reduced-order modeling, complex systems that exhibit high state-space dimensionality are described and evolved using a small number of parameters. These parameters can be obtained in a data-driven way, where a high-dimensional dataset is projected onto a lower-dimensional basis. A complex system is then restricted to states on a low-dimensional manifold where it can be efficiently modeled. While this approach brings computational benefits, obtaining a good quality of the manifold topology becomes a crucial aspect when models, such as nonlinear regression, are built on top of the manifold. Here, we present a quantitative metric for characterizing manifold topologies. Our metric pays attention to non-uniqueness and spatial gradients in physical quantities of interest, and can be applied to manifolds of arbitrary dimensionality. Using the metric as a cost function in optimization algorithms, we show that optimized low-dimensional projections can be found. We delineate a few applications of the cost function to datasets representing argon plasma, reacting flows and atmospheric pollutant dispersion. We demonstrate how the cost function can assess various dimensionality reduction and manifold learning techniques as well as data preprocessing strategies in their capacity to yield quality low-dimensional projections. We show that improved manifold topologies can facilitate building nonlinear regression models.
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16
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Structural and functional network mechanisms of rescuing cognitive control in aging. Neuroimage 2022; 262:119547. [DOI: 10.1016/j.neuroimage.2022.119547] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 07/13/2022] [Accepted: 08/04/2022] [Indexed: 11/23/2022] Open
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17
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Yu H, Wang C, Li K, Liu C, Wang J, Liu J. Oscillatory Resonance and Dynamic Manifolds in Cortical Networks with Time Delay and Multiple External Stimuli. IEEE Trans Neural Syst Rehabil Eng 2022; 30:2097-2106. [PMID: 35849676 DOI: 10.1109/tnsre.2022.3191809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Rhythmic oscillation is crucial for information transmission and neural communication among different brain areas. Stochastic resonance (SR) can evoke different patterns of neural oscillation. However, the characteristics of network resonance and underlying dynamical mechanisms are still unclear. In this paper, a biological model of cortical network is established and its dynamical response to external periodic stimulation is investigated. We explore the oscillatory resonance of excitatory and inhibitory populations in cortical network. It is found that the intrinsic parameters of neural populations determine the extent of resonant activity, indicating that the firing rate exhibits coherent oscillation when the frequency of external stimulation is close to intrinsic frequency of neural population. In addition, the nonlinear dynamics of cortical network in oscillatory resonance can be represented by helical manifolds in low-dimensional state space. The geometry of neural manifolds reveals the periodic dynamics and state transition in oscillatory resonance. Moreover, time delay in chemical synapses can induce multiple resonances, which appear intermittently at integer multiples of the period of input signal. The dynamical response of neural population achieves maximal periodically, due to the transition of network states induced by time delay. Furthermore, mean-field theory is applied to analyze theoretical dynamic of cortical networks with time delay and demonstrate the effective transmission of stimulation information via oscillatory resonance in the brain. Consequently, the obtained results contribute to the improvement of neuromodulation for neurological disease from the viewpoint of the neural basis.
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18
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Weninger L, Srivastava P, Zhou D, Kim JZ, Cornblath EJ, Bertolero MA, Habel U, Merhof D, Bassett DS. Information content of brain states is explained by structural constraints on state energetics. Phys Rev E 2022; 106:014401. [PMID: 35974521 DOI: 10.1103/physreve.106.014401] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 04/27/2022] [Indexed: 06/15/2023]
Abstract
Signal propagation along the structural connectome of the brain induces changes in the patterns of activity. These activity patterns define global brain states and contain information in accordance with their expected probability of occurrence. Being the physical substrate upon which information propagates, the structural connectome, in conjunction with the dynamics, determines the set of possible brain states and constrains the transition between accessible states. Yet, precisely how these structural constraints on state transitions relate to their information content remains unexplored. To address this gap in knowledge, we defined the information content as a function of the activation distribution, where statistically rare values of activation correspond to high information content. With this numerical definition in hand, we studied the spatiotemporal distribution of information content in functional magnetic resonance imaging (fMRI) data from the Human Connectome Project during different tasks, and report four key findings. First, information content strongly depends on cognitive context; its absolute level and spatial distribution depend on the cognitive task. Second, while information content shows similarities to other measures of brain activity, it is distinct from both Neurosynth maps and task contrast maps generated by a general linear model applied to the fMRI data. Third, the brain's structural wiring constrains the cost to control its state, where the cost to transition into high information content states is larger than that to transition into low information content states. Finally, all state transitions-especially those to high information content states-are less costly than expected from random network null models, thereby indicating the brains marked efficiency. Taken together, our findings establish an explanatory link between the information contained in a brain state and the energetic cost of attaining that state, thereby laying important groundwork for our understanding of large-scale cognitive computations.
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Affiliation(s)
- Leon Weninger
- Department of Bioengineering, School of Engineering & Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Institute of Imaging & Computer Vision, RWTH Aachen University, 52072 Aachen, Germany
| | - Pragya Srivastava
- Department of Bioengineering, School of Engineering & Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Dale Zhou
- Department of Bioengineering, School of Engineering & Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Department of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Jason Z Kim
- Department of Bioengineering, School of Engineering & Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Eli J Cornblath
- Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Maxwell A Bertolero
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Ute Habel
- Department of Psychiatry, Psychotherapy and Psychosomatics, Medical Faculty, RWTH Aachen University, 52074 Aachen, Germany
- Institute of Neuroscience and Medicine 10, Research Centre Jülich, 52428 Jülich, Germany
| | - Dorit Merhof
- Institute of Imaging & Computer Vision, RWTH Aachen University, 52072 Aachen, Germany
| | - Dani S Bassett
- Department of Bioengineering, School of Engineering & Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Department of Psychiatry, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Department of Physics & Astronomy, College of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Department of Electrical & Systems Engineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
- Santa Fe Institute, Santa Fe, New Mexico 87501, USA
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19
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Cao M, Vogrin SJ, Peterson ADH, Woods W, Cook MJ, Plummer C. Dynamical Network Models From EEG and MEG for Epilepsy Surgery—A Quantitative Approach. Front Neurol 2022; 13:837893. [PMID: 35422755 PMCID: PMC9001937 DOI: 10.3389/fneur.2022.837893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 03/01/2022] [Indexed: 11/16/2022] Open
Abstract
There is an urgent need for more informative quantitative techniques that non-invasively and objectively assess strategies for epilepsy surgery. Invasive intracranial electroencephalography (iEEG) remains the clinical gold standard to investigate the nature of the epileptogenic zone (EZ) before surgical resection. However, there are major limitations of iEEG, such as the limited spatial sampling and the degree of subjectivity inherent in the analysis and clinical interpretation of iEEG data. Recent advances in network analysis and dynamical network modeling provide a novel aspect toward a more objective assessment of the EZ. The advantage of such approaches is that they are data-driven and require less or no human input. Multiple studies have demonstrated success using these approaches when applied to iEEG data in characterizing the EZ and predicting surgical outcomes. However, the limitations of iEEG recordings equally apply to these studies—limited spatial sampling and the implicit assumption that iEEG electrodes, whether strip, grid, depth or stereo EEG (sEEG) arrays, are placed in the correct location. Therefore, it is of interest to clinicians and scientists to see whether the same analysis and modeling techniques can be applied to whole-brain, non-invasive neuroimaging data (from MRI-based techniques) and neurophysiological data (from MEG and scalp EEG recordings), thus removing the limitation of spatial sampling, while safely and objectively characterizing the EZ. This review aims to summarize current state of the art non-invasive methods that inform epilepsy surgery using network analysis and dynamical network models. We also present perspectives on future directions and clinical applications of these promising approaches.
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Affiliation(s)
- Miao Cao
- Center for MRI Research, Peking University, Beijing, China
- Department of Medicine, The University of Melbourne, Melbourne, VIC, Australia
- Centre for Clinical Neurosciences and Neurological Research, St Vincent's Hospital Melbourne, Melbourne, VIC, Australia
| | - Simon J. Vogrin
- Department of Medicine, The University of Melbourne, Melbourne, VIC, Australia
- Centre for Clinical Neurosciences and Neurological Research, St Vincent's Hospital Melbourne, Melbourne, VIC, Australia
- School of Health Sciences, Swinburne University of Technology, Melbourne, VIC, Australia
| | - Andre D. H. Peterson
- Department of Medicine, The University of Melbourne, Melbourne, VIC, Australia
- Centre for Clinical Neurosciences and Neurological Research, St Vincent's Hospital Melbourne, Melbourne, VIC, Australia
| | - William Woods
- School of Health Sciences, Swinburne University of Technology, Melbourne, VIC, Australia
| | - Mark J. Cook
- Department of Medicine, The University of Melbourne, Melbourne, VIC, Australia
- Centre for Clinical Neurosciences and Neurological Research, St Vincent's Hospital Melbourne, Melbourne, VIC, Australia
| | - Chris Plummer
- Department of Medicine, The University of Melbourne, Melbourne, VIC, Australia
- Centre for Clinical Neurosciences and Neurological Research, St Vincent's Hospital Melbourne, Melbourne, VIC, Australia
- School of Health Sciences, Swinburne University of Technology, Melbourne, VIC, Australia
- *Correspondence: Chris Plummer
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20
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Functional Coupling of the Locus Coeruleus Is Linked to Successful Cognitive Control. Brain Sci 2022; 12:brainsci12030305. [PMID: 35326262 PMCID: PMC8946131 DOI: 10.3390/brainsci12030305] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 02/13/2022] [Accepted: 02/17/2022] [Indexed: 11/20/2022] Open
Abstract
The locus coeruleus (LC) is a brainstem structure that sends widespread efferent projections throughout the mammalian brain. The LC constitutes the major source of noradrenaline (NE), a modulatory neurotransmitter that is crucial for fundamental brain functions such as arousal, attention, and cognitive control. This role of the LC-NE is traditionally not believed to reflect functional influences on the frontoparietal network or the striatum, but recent advances in chemogenetic manipulations of the rodent brain have challenged this notion. However, demonstrations of LC-NE functional connectivity with these areas in the human brain are surprisingly sparse. Here, we close this gap. Using an established emotional stroop task, we directly compared trials requiring response conflict control with trials that did not require this, but were matched for visual stimulus properties, response modality, and controlled for pupil dilation differences across both trial types. We found that LC-NE functional coupling with the parietal cortex and regions of the striatum is substantially enhanced during trials requiring response conflict control. Crucially, the strength of this functional coupling was directly related to individual reaction time differences incurred by conflict resolution. Our data concur with recent rodent findings and highlight the importance of converging evidence between human and nonhuman neurophysiology to further understand the neural systems supporting adaptive and maladaptive behavior in health and disease.
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21
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Calderon CB, Verguts T, Frank MJ. Thunderstruck: The ACDC model of flexible sequences and rhythms in recurrent neural circuits. PLoS Comput Biol 2022; 18:e1009854. [PMID: 35108283 PMCID: PMC8843237 DOI: 10.1371/journal.pcbi.1009854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 02/14/2022] [Accepted: 01/21/2022] [Indexed: 11/18/2022] Open
Abstract
Adaptive sequential behavior is a hallmark of human cognition. In particular, humans can learn to produce precise spatiotemporal sequences given a certain context. For instance, musicians can not only reproduce learned action sequences in a context-dependent manner, they can also quickly and flexibly reapply them in any desired tempo or rhythm without overwriting previous learning. Existing neural network models fail to account for these properties. We argue that this limitation emerges from the fact that sequence information (i.e., the position of the action) and timing (i.e., the moment of response execution) are typically stored in the same neural network weights. Here, we augment a biologically plausible recurrent neural network of cortical dynamics to include a basal ganglia-thalamic module which uses reinforcement learning to dynamically modulate action. This “associative cluster-dependent chain” (ACDC) model modularly stores sequence and timing information in distinct loci of the network. This feature increases computational power and allows ACDC to display a wide range of temporal properties (e.g., multiple sequences, temporal shifting, rescaling, and compositionality), while still accounting for several behavioral and neurophysiological empirical observations. Finally, we apply this ACDC network to show how it can learn the famous “Thunderstruck” song intro and then flexibly play it in a “bossa nova” rhythm without further training. How do humans flexibly adapt action sequences? For instance, musicians can learn a song and quickly speed up or slow down the tempo, or even play the song following a completely different rhythm (e.g., a rock song using a bossa nova rhythm). In this work, we build a biologically plausible network of cortico-basal ganglia interactions that explains how this temporal flexibility may emerge in the brain. Crucially, our model factorizes sequence order and action timing, respectively represented in cortical and basal ganglia dynamics. This factorization allows full temporal flexibility, i.e. the timing of a learned action sequence can be recomposed without interfering with the order of the sequence. As such, our model is capable of learning asynchronous action sequences, and flexibly shift, rescale, and recompose them, while accounting for biological data.
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Affiliation(s)
- Cristian Buc Calderon
- Department of Cognitive, Linguistic & Psychological Sciences, Brown University, Providence, Rhode Island, United States of America
- Department of Experimental Psychology, Ghent University, Ghent, Belgium
- Carney Institute for Brain Science, Brown University, Providence, Rhode Island, United States of America
- * E-mail:
| | - Tom Verguts
- Department of Experimental Psychology, Ghent University, Ghent, Belgium
| | - Michael J. Frank
- Department of Cognitive, Linguistic & Psychological Sciences, Brown University, Providence, Rhode Island, United States of America
- Carney Institute for Brain Science, Brown University, Providence, Rhode Island, United States of America
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22
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Iliopoulos AC, Papasotiriou I. Functional Complex Networks Based on Operational Architectonics: Application on Electroencephalography-Brain-computer Interface for Imagined Speech. Neuroscience 2021; 484:98-118. [PMID: 34871742 DOI: 10.1016/j.neuroscience.2021.11.045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 11/26/2021] [Accepted: 11/29/2021] [Indexed: 01/18/2023]
Abstract
A new method for analyzing brain complex dynamics and states is presented. This method constructs functional brain graphs and is comprised of two pylons: (a) Operational architectonics (OA) concept of brain and mind functioning. (b) Network neuroscience. In particular, the algorithm utilizes OA framework for a non-parametric segmentation of EEGs, which leads to the identification of change points, namely abrupt jumps in EEG amplitude, called Rapid Transition Processes (RTPs). Subsequently, the time coordinates of RTPs are used for the generation of undirected weighted complex networks fulfilling a scale-free topology criterion, from which various network metrics of brain connectivity are estimated. These metrics form feature vectors, which can be used in machine learning algorithms for classification and/or prediction. The method is tested in classification problems on an EEG-based BCI data set, acquired from individuals during imagery pronunciation tasks of various words/vowels. The classification results, based on a Naïve Bayes classifier, show that the overall accuracies were found to be above chance level in all tested cases. This method was also compared with other state-of-the-art computational approaches commonly used for functional network generation, exhibiting competitive performance. The method can be useful to neuroscientists wishing to enhance their repository of brain research algorithms.
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Affiliation(s)
- A C Iliopoulos
- Research Genetic Cancer Centre S.A. Industrial Area of Florina, 53100 Florina, Greece
| | - I Papasotiriou
- Research Genetic Cancer Centre International GmbH, Zug 6300, Switzerland.
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23
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Silent Synapses in Cocaine-Associated Memory and Beyond. J Neurosci 2021; 41:9275-9285. [PMID: 34759051 DOI: 10.1523/jneurosci.1559-21.2021] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Revised: 09/22/2021] [Accepted: 09/27/2021] [Indexed: 11/21/2022] Open
Abstract
Glutamatergic synapses are key cellular sites where cocaine experience creates memory traces that subsequently promote cocaine craving and seeking. In addition to making across-the-board synaptic adaptations, cocaine experience also generates a discrete population of new synapses that selectively encode cocaine memories. These new synapses are glutamatergic synapses that lack functionally stable AMPARs, often referred to as AMPAR-silent synapses or, simply, silent synapses. They are generated de novo in the NAc by cocaine experience. After drug withdrawal, some of these synapses mature by recruiting AMPARs, contributing to the consolidation of cocaine-associated memory. After cue-induced retrieval of cocaine memories, matured silent synapses alternate between two dynamic states (AMPAR-absent vs AMPAR-containing) that correspond with the behavioral manifestations of destabilization and reconsolidation of these memories. Here, we review the molecular mechanisms underlying silent synapse dynamics during behavior, discuss their contributions to circuit remodeling, and analyze their role in cocaine-memory-driven behaviors. We also propose several mechanisms through which silent synapses can form neuronal ensembles as well as cross-region circuit engrams for cocaine-specific behaviors. These perspectives lead to our hypothesis that cocaine-generated silent synapses stand as a distinct set of synaptic substrates encoding key aspects of cocaine memory that drive cocaine relapse.
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Sathiyaprasad B, Seetharaman K. Medical Surgical Video Recognition and Retrieval Based on Novel Unified Approximation. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3874] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Video retrieval recognition is a linear characterized action constituted by many frame similarity-based videos. This medical video recognition and classification can be a great extent in medical research, such as Endoscopic, radiological, pathological, and applied health informatics.
General Video Retrieval Recognition (GVRR) cannot address a problem with recognition alone. GVRR can be solving the Multi-Input-Multi-Output (MIMO) interface mixed video retrieval system. To generalize the conventional video retrieval interface like Multi-user MIMO, WiMAX MIMO, single-user
MIMO, several types of research made excused. In fine-tuning existing video retrieval, this research gives the authentic procedure for a frame-based cognitive operation called Secure Approximation and sTability Based Secure Video Retrieval recognition (SAT-SR) recognition proposed. In this
research article, the process of recognition has three processes generalized by the video retrieval system. Initially, the virtual dissection and connection weights of input video were established using the mathematical and numerical analysis of interpolation estimation. Secondly, the interpolation
approximation and activation function were figured out using the Open Mcrypt Stimulus (oMs) for video security fragments. Similarly, systematic investigations are accomplished for approximation error computation. The result for this widely circulated utilization of three processes on the video
retrieval recognition prevents the occurrence of the cybercrime abuse of stored video registers. The proposed technique was used to identify the virtual dissection, interpolation, and activation function for decoding the videos. Using this information, the abusers identified cybercrime rate
might be reduced considerably.
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Affiliation(s)
- B. Sathiyaprasad
- Research Scholar, Department of Computer Science and Engineering, Annamalai University, Annamalainagar 608 002, Tamilnadu, India
| | - K. Seetharaman
- Department of Computer and Information Science, Annamalai University, Annamalainagar 608 002, Tamilnadu, India
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25
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Ebitz RB, Hayden BY. The population doctrine in cognitive neuroscience. Neuron 2021; 109:3055-3068. [PMID: 34416170 PMCID: PMC8725976 DOI: 10.1016/j.neuron.2021.07.011] [Citation(s) in RCA: 69] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 07/02/2021] [Accepted: 07/13/2021] [Indexed: 01/08/2023]
Abstract
A major shift is happening within neurophysiology: a population doctrine is drawing level with the single-neuron doctrine that has long dominated the field. Population-level ideas have so far had their greatest impact in motor neuroscience, but they hold great promise for resolving open questions in cognition as well. Here, we codify the population doctrine and survey recent work that leverages this view to specifically probe cognition. Our discussion is organized around five core concepts that provide a foundation for population-level thinking: (1) state spaces, (2) manifolds, (3) coding dimensions, (4) subspaces, and (5) dynamics. The work we review illustrates the progress and promise that population-level thinking holds for cognitive neuroscience-for delivering new insight into attention, working memory, decision-making, executive function, learning, and reward processing.
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Affiliation(s)
- R Becket Ebitz
- Department of Neurosciences, Faculté de médecine, Université de Montréal, Montréal, QC, Canada.
| | - Benjamin Y Hayden
- Department of Neuroscience, Center for Magnetic Resonance Research, and Center for Neuroengineering, University of Minnesota, Minneapolis, MN, USA
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26
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Paredes O, López JB, Covantes-Osuna C, Ocegueda-Hernández V, Romo-Vázquez R, Morales JA. A Transcriptome Community-and-Module Approach of the Human Mesoconnectome. ENTROPY (BASEL, SWITZERLAND) 2021; 23:1031. [PMID: 34441171 PMCID: PMC8393183 DOI: 10.3390/e23081031] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 08/03/2021] [Accepted: 08/06/2021] [Indexed: 12/15/2022]
Abstract
Graph analysis allows exploring transcriptome compartments such as communities and modules for brain mesostructures. In this work, we proposed a bottom-up model of a gene regulatory network to brain-wise connectome workflow. We estimated the gene communities across all brain regions from the Allen Brain Atlas transcriptome database. We selected the communities method to yield the highest number of functional mesostructures in the network hierarchy organization, which allowed us to identify specific brain cell functions (e.g., neuroplasticity, axonogenesis and dendritogenesis communities). With these communities, we built brain-wise region modules that represent the connectome. Our findings match with previously described anatomical and functional brain circuits, such the default mode network and the default visual network, supporting the notion that the brain dynamics that carry out low- and higher-order functions originate from the modular composition of a GRN complex network.
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Affiliation(s)
| | | | | | | | - Rebeca Romo-Vázquez
- Computer Sciences Department, Exact Sciences and Engineering University Centre, Universidad de Guadalajara, Guadalajara 44430, Mexico; (O.P.); (J.B.L.); (C.C.-O.); (V.O.-H.)
| | - J. Alejandro Morales
- Computer Sciences Department, Exact Sciences and Engineering University Centre, Universidad de Guadalajara, Guadalajara 44430, Mexico; (O.P.); (J.B.L.); (C.C.-O.); (V.O.-H.)
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27
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Suárez LE, Richards BA, Lajoie G, Misic B. Learning function from structure in neuromorphic networks. NAT MACH INTELL 2021. [DOI: 10.1038/s42256-021-00376-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Brejcha J, Tureček P, Kleisner K. Perception-driven dynamics of mimicry based on attractor field model. Interface Focus 2021; 11:20200052. [PMID: 34055303 PMCID: PMC8086919 DOI: 10.1098/rsfs.2020.0052] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/23/2021] [Indexed: 01/02/2023] Open
Abstract
We provide a formal account of an interface that bridges two different levels of dynamic processes manifested by mimicry: prey-prey interactions and predators' perception. Mimicry is a coevolutionary process between an animate selective agent and at least two similar organisms selected by agent's perception-driven actions. Attractor field model explains perceived similarity of forms by noting that in both human and animal cognition, morphologically intermediate forms are more likely to be perceived as belonging to rare rather than abundant forms. We formalize this model in terms of predators' perception space deformation using numerical simulations and argue that the probability of confusion between similar species creates pressure on the perception space, which in turn leads to inflation of regions of perception space with high density of species representations. Such inflation causes increased discrimination between species by a predator, which implies that adaptive mimicry could initially emerge more easily among atypical species because they do not need the same level of similarity to the model. We provide a theoretical instrument to conceptualize interdependence between objective measurable matrices and perceived matrices of the same external reality. We believe that our framework leads to a more precise understanding of the evolution of mimicry.
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Affiliation(s)
- Jindřich Brejcha
- Department of Philosophy and History of Science, Faculty of Science, Charles University, Viničná 7, Praha 2 128 00, Czech Republic
| | - Petr Tureček
- Department of Philosophy and History of Science, Faculty of Science, Charles University, Viničná 7, Praha 2 128 00, Czech Republic
- Center for Theoretical Study, Charles University and Czech Academy of Sciences, Jilská 1, Prague 1 110 00, Czech Republic
| | - Karel Kleisner
- Department of Philosophy and History of Science, Faculty of Science, Charles University, Viničná 7, Praha 2 128 00, Czech Republic
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30
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Synchronous Brain Dynamics Establish Brief States of Communality in Distant Neuronal Populations. eNeuro 2021; 8:ENEURO.0005-21.2021. [PMID: 33875454 PMCID: PMC8116110 DOI: 10.1523/eneuro.0005-21.2021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 02/22/2021] [Accepted: 03/11/2021] [Indexed: 11/21/2022] Open
Abstract
Intrinsic brain dynamics co-fluctuate between distant regions in an organized manner during rest, establishing large-scale functional networks. We investigate these brain dynamics on a millisecond time scale by focusing on electroencephalographic (EEG) source analyses. While synchrony is thought of as a neuronal mechanism grouping distant neuronal populations into assemblies, the relevance of simultaneous zero-lag synchronization between brain areas in humans remains largely unexplored. This negligence is because of the confound of volume conduction, leading inherently to temporal dependencies of source estimates derived from scalp EEG [and magnetoencephalography (MEG)], referred to as spatial leakage. Here, we focus on the analyses of simultaneous, i.e., quasi zero-lag related, synchronization that cannot be explained by spatial leakage phenomenon. In eighteen subjects during rest with eyes closed, we provide evidence that first, simultaneous synchronization is present between distant brain areas and second, that this long-range synchronization is occurring in brief epochs, i.e., 54-80 ms. Simultaneous synchronization might signify the functional convergence of remote neuronal populations. Given the simultaneity of distant regions, these synchronization patterns might relate to the representation and maintenance, rather than processing of information. This long-range synchronization is briefly stable, not persistently, indicating flexible spatial reconfiguration pertaining to the establishment of particular, re-occurring states. Taken together, we suggest that the balance between temporal stability and spatial flexibility of long-range, simultaneous synchronization patterns is characteristic of the dynamic coordination of large-scale functional brain networks. As such, quasi zero-phase related EEG source fluctuations are physiologically meaningful if spatial leakage is considered appropriately.
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31
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Vaisvaser S. The Embodied-Enactive-Interactive Brain: Bridging Neuroscience and Creative Arts Therapies. Front Psychol 2021; 12:634079. [PMID: 33995190 PMCID: PMC8121022 DOI: 10.3389/fpsyg.2021.634079] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 04/07/2021] [Indexed: 01/10/2023] Open
Abstract
The recognition and incorporation of evidence-based neuroscientific concepts into creative arts therapeutic knowledge and practice seem valuable and advantageous for the purpose of integration and professional development. Moreover, exhilarating insights from the field of neuroscience coincide with the nature, conceptualization, goals, and methods of Creative Arts Therapies (CATs), enabling comprehensive understandings of the clinical landscape, from a translational perspective. This paper contextualizes and discusses dynamic brain functions that have been suggested to lie at the heart of intra- and inter-personal processes. Touching upon fundamental aspects of the self and self-other interaction, the state-of-the-art neuroscientific-informed views will shed light on mechanisms of the embodied, predictive and relational brain. The conceptual analysis introduces and interweaves the following contemporary perspectives of brain function: firstly, the grounding of mental activity in the lived, bodily experience will be delineated; secondly, the enactive account of internal models, or generative predictive representations, shaped by experience, will be defined and extensively deliberated; and thirdly, the interpersonal simulation and synchronization mechanisms that support empathy and mentalization will be thoroughly considered. Throughout the paper, the cross-talks between the brain and the body, within the brain through functionally connected neural networks and in the context of agent-environment dynamics, will be addressed. These communicative patterns will be elaborated on to unfold psychophysiological linkage, as well as psychopathological shifts, concluding with the neuroplastic change associated with the formulation of CATs. The manuscript suggests an integrative view of the brain-body-mind in contexts relevant to the therapeutic potential of the expressive creative arts and the main avenues by which neuroscience may ground, enlighten and enrich the clinical psychotherapeutic practice.
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Affiliation(s)
- Sharon Vaisvaser
- School of Society and the Arts, Ono Academic College, Kiryat Ono, Israel
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32
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Lioi G, Gripon V, Brahim A, Rousseau F, Farrugia N. Gradients of connectivity as graph Fourier bases of brain activity. Netw Neurosci 2021; 5:322-336. [PMID: 34189367 PMCID: PMC8233110 DOI: 10.1162/netn_a_00183] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Accepted: 01/05/2021] [Indexed: 12/11/2022] Open
Abstract
The application of graph theory to model the complex structure and function of the brain has shed new light on its organization, prompting the emergence of network neuroscience. Despite the tremendous progress that has been achieved in this field, still relatively few methods exploit the topology of brain networks to analyze brain activity. Recent attempts in this direction have leveraged on the one hand graph spectral analysis (to decompose brain connectivity into eigenmodes or gradients) and the other graph signal processing (to decompose brain activity "coupled to" an underlying network in graph Fourier modes). These studies have used a variety of imaging techniques (e.g., fMRI, electroencephalography, diffusion-weighted and myelin-sensitive imaging) and connectivity estimators to model brain networks. Results are promising in terms of interpretability and functional relevance, but methodologies and terminology are variable. The goals of this paper are twofold. First, we summarize recent contributions related to connectivity gradients and graph signal processing, and attempt a clarification of the terminology and methods used in the field, while pointing out current methodological limitations. Second, we discuss the perspective that the functional relevance of connectivity gradients could be fruitfully exploited by considering them as graph Fourier bases of brain activity.
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Affiliation(s)
| | | | - Abdelbasset Brahim
- INSERM, Laboratoire Traitement du Signal et de l’Image (LTSI) U1099, University of Rennes, Rennes, France
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The Best Laid Plans: Computational Principles of Anterior Cingulate Cortex. Trends Cogn Sci 2021; 25:316-329. [PMID: 33593641 DOI: 10.1016/j.tics.2021.01.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 01/17/2021] [Accepted: 01/19/2021] [Indexed: 12/26/2022]
Abstract
Despite continual debate for the past 30 years about the function of anterior cingulate cortex (ACC), its key contribution to neurocognition remains unknown. However, recent computational modeling work has provided insight into this question. Here we review computational models that illustrate three core principles of ACC function, related to hierarchy, world models, and cost. We also discuss four constraints on the neural implementation of these principles, related to modularity, binding, encoding, and learning and regulation. These observations suggest a role for ACC in hierarchical model-based hierarchical reinforcement learning (HMB-HRL), which instantiates a mechanism motivating the execution of high-level plans.
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Nested oscillations and brain connectivity during sequential stages of feature-based attention. Neuroimage 2020; 223:117354. [PMID: 32916284 DOI: 10.1016/j.neuroimage.2020.117354] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 08/10/2020] [Accepted: 09/05/2020] [Indexed: 12/25/2022] Open
Abstract
Brain mechanisms of visual selective attention involve both local and network-level activity changes at specific oscillatory rhythms, but their interplay remains poorly explored. Here, we investigate anticipatory and reactive effects of feature-based attention using separate fMRI and EEG recordings, while participants attended to one of two spatially overlapping visual features (motion and orientation). We focused on EEG source analysis of local neuronal rhythms and nested oscillations and on graph analysis of connectivity changes in a network of fMRI-defined regions of interest, and characterized a cascade of attentional effects at multiple spatial scales. We discuss how the results may reconcile several theories of selective attention, by showing how β rhythms support anticipatory information routing through increased network efficiency, while reactive α-band desynchronization patterns and increased α-γ coupling in task-specific sensory areas mediate stimulus-evoked processing of task-relevant signals.
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