1
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Harrison SJ, Malkin SY, Joye SB. Dispersant addition, but not nutrients, stimulated blooms of multiple hydrocarbonoclastic genera in nutrient-replete coastal marine surface waters. MARINE POLLUTION BULLETIN 2024; 204:116490. [PMID: 38843703 DOI: 10.1016/j.marpolbul.2024.116490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2023] [Revised: 05/08/2024] [Accepted: 05/09/2024] [Indexed: 06/17/2024]
Abstract
The range of impacts of chemical dispersants on indigenous marine microbial communities and their activity remains poorly constrained. We tested the response of nearshore surface waters chronically exposed to oil leakage from a downed platform and supplied with nutrients by the Mississippi River to Corexit dispersant and nutrient additions. As assessed using 14C-labeled tracers, hexadecane mineralization potential was orders of magnitude higher in all unamended samples than in previously assessed bathypelagic communities. Nutrient additions stimulated microbial mortality but did not affect community composition and had no generalizable effect on hydrocarbon mineralization potential. By contrast, Corexit amendments caused a rapid shift in community composition and a drawdown of inorganic nitrogen and orthophosphate though no generalizable effect on hydrocarbon mineralization potential. The hydrocarbonoclastic community's response to dispersants is largely driven by the relative availability of organic substrates and nutrients, underscoring the role of environmental conditions and multiple interacting stressors on hydrocarbon degradation potential.
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Affiliation(s)
- Sarah J Harrison
- Department of Marine Sciences, University of Georgia, Athens, GA 30602, USA
| | - Sairah Y Malkin
- Department of Marine Sciences, University of Georgia, Athens, GA 30602, USA
| | - Samantha B Joye
- Department of Marine Sciences, University of Georgia, Athens, GA 30602, USA.
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2
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Kottuparambil S, Ashok A, López P, Amad MH, Duarte CM, Agusti S. High temperature and solar radiation in the Red Sea enhance the dissolution of crude oil from surface films. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:42034-42048. [PMID: 38856854 PMCID: PMC11219460 DOI: 10.1007/s11356-024-33864-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 05/28/2024] [Indexed: 06/11/2024]
Abstract
The Red Sea is a hotspot of biodiversity susceptible to oil pollution. Besides, it is one of the warmest seas on the Earth with highly transparent waters. In this study, we estimated the oil dissolution rates under natural sunlight spectra and temperature conditions using coastal oil slicks collected after the 2019 Sabiti oil spill in the Red Sea. Optical analyses revealed the significant interactive effect of sunlight and temperature in enhancing the dissolution of oil into dissolved organic matter (DOM). The highest oil dissolution rate (38.68 g C m-3 d-1) was observed in full-spectrum sunlight. Oil dissolution significantly enhanced total organic carbon (TOC) and polycyclic aromatic hydrocarbons (PAHs) in seawater. High nucleic acid (HNA) bacteria, likely the oil degraders, proliferated from 30 to 70 - 90% after 4 days. The heavier stable carbon isotopic composition of methane (δ13C-CH4) and lighter stable carbon isotopic composition of carbon dioxide (δ13C-CO2) indicate the putative role of bacterial processes in the natural degradation of crude oil. The results indicated that the combined effect of temperature and solar radiation enhanced the biological and photochemical dissolution of oil on the Red Sea surface.
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Affiliation(s)
- Sreejith Kottuparambil
- Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia.
- Mubadala Arabian Center for Climate and Environmental Sciences (ACCESS), New York University Abu Dhabi, P.O. Box 129188, Abu Dhabi, United Arab Emirates.
| | - Ananya Ashok
- Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia
| | - Patricia López
- King Abdullah University of Science and Technology (KAUST), Core Labs, 23955-6900, Thuwal, Saudi Arabia
| | - Maan H Amad
- King Abdullah University of Science and Technology (KAUST), Core Labs, 23955-6900, Thuwal, Saudi Arabia
| | - Carlos M Duarte
- Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia
- Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia
| | - Susana Agusti
- Red Sea Research Center (RSRC), King Abdullah University of Science and Technology (KAUST), 23955-6900, Thuwal, Saudi Arabia
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3
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Perdigão R, Tomasino MP, Magalhães C, Carvalho MF, Almeida CMR, Mucha AP. Microbial response to a port fuel spill: Community dynamics and potential for bioremediation. MARINE POLLUTION BULLETIN 2024; 203:116434. [PMID: 38713928 DOI: 10.1016/j.marpolbul.2024.116434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/22/2024] [Accepted: 04/26/2024] [Indexed: 05/09/2024]
Abstract
Following a fuel leakage inside a Portuguese maritime port, we conducted parallel 30-day experiments using contaminated seawater and fuel, sampled five days after the incident. This study aimed to (i)survey the native microbial community response to the spilled fuel and (ii)evaluate the efficacy of bioremediation, both biostimulation and bioaugmentation with a lyophilized bacterial consortium (Rhodococcus erythropolis, Pseudomonas sp.), in accelerating hydrocarbon degradation. Metabarcoding analysis revealed a shift in microbial communities, with increased abundance of hydrocarbon-degraders (e.g. Alcanivorax, Thalassospira). Ninety-five hydrocarbonoclastic bacteria were isolated, including key groups from the enriched communities. The lyophilized bacteria added in bioaugmentation, enhanced the abundance of hydrocarbon-degraders over time and were recovered throughout time. Bioremediation treatments favoured biodegradation, achieving over 60 % removal of total petroleum hydrocarbons after 15 days, contrasting with natural attenuation where almost no TPH was removed. This work highlights the potential of bioremediation technologies to accelerate hydrocarbon-degrading activity, for oil spills inside ports.
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Affiliation(s)
- Rafaela Perdigão
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; School of Medicine and Biomedical Sciences, University of Porto, Rua de Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal.
| | - Maria Paola Tomasino
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal.
| | - Catarina Magalhães
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
| | - Maria F Carvalho
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; School of Medicine and Biomedical Sciences, University of Porto, Rua de Jorge Viterbo Ferreira, 228, Porto 4050-313, Portugal.
| | - C Marisa R Almeida
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
| | - Ana P Mucha
- Interdisciplinary Centre of Marine and Environmental Research of the University of Porto, Novo Edifício do Terminal de Cruzeiros do Porto de Leixões, Avenida General Norton de Matos, S/N, Matosinhos 4450-208, Portugal; Faculty of Sciences, University of Porto, Rua do Campo Alegre 790, Porto 4150-171, Portugal.
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4
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Gorman ED, Lladser ME. Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance. PLoS Comput Biol 2024; 20:e1011543. [PMID: 38768195 PMCID: PMC11142682 DOI: 10.1371/journal.pcbi.1011543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 05/31/2024] [Accepted: 04/25/2024] [Indexed: 05/22/2024] Open
Abstract
Random forests have emerged as a promising tool in comparative metagenomics because they can predict environmental characteristics based on microbial composition in datasets where β-diversity metrics fall short of revealing meaningful relationships between samples. Nevertheless, despite this efficacy, they lack biological insight in tandem with their predictions, potentially hindering scientific advancement. To overcome this limitation, we leverage a geometric characterization of random forests to introduce a data-driven phylogenetic β-diversity metric, the adaptive Haar-like distance. This new metric assigns a weight to each internal node (i.e., split or bifurcation) of a reference phylogeny, indicating the relative importance of that node in discerning environmental samples based on their microbial composition. Alongside this, a weighted nearest-neighbors classifier, constructed using the adaptive metric, can be used as a proxy for the random forest while maintaining accuracy on par with that of the original forest and another state-of-the-art classifier, CoDaCoRe. As shown in datasets from diverse microbial environments, however, the new metric and classifier significantly enhance the biological interpretability and visualization of high-dimensional metagenomic samples.
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Affiliation(s)
- Evan D. Gorman
- Department of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America
| | - Manuel E. Lladser
- Department of Applied Mathematics, University of Colorado, Boulder, Colorado, United States of America
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5
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Pinpimai K, Punnarak P, Thitiphuree T, Songploy S, Panichpol A, Chankong A, Chavanich S, Viyakarn V. 16S rRNA amplicon sequencing of seawater microbiota from Rayong Province, Thailand, affected by oil spills. Microbiol Resour Announc 2024; 13:e0096623. [PMID: 38426730 PMCID: PMC11008116 DOI: 10.1128/mra.00966-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/19/2024] [Indexed: 03/02/2024] Open
Abstract
We reported on microbial communities isolated from 18 seawater samples affected by oil spills in Rayong province, Thailand, using the V3-V4 region of 16S rRNA gene sequencing.
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Affiliation(s)
- Komkiew Pinpimai
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
| | - Porntep Punnarak
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
| | - Tongchai Thitiphuree
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
| | - Se Songploy
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
| | - Arnupap Panichpol
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
| | | | - Suchana Chavanich
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
- Reef Biology Research Group, Department of Marine Science, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
| | - Voranop Viyakarn
- Aquatic Resources Research Institute, Chulalongkorn University, Bangkok, Thailand
- Reef Biology Research Group, Department of Marine Science, Faculty of Science, Chulalongkorn University, Bangkok, Thailand
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6
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Pearman WS, Morales SE, Vaux F, Gemmell NJ, Fraser CI. Host population crashes disrupt the diversity of associated marine microbiomes. Environ Microbiol 2024; 26:e16611. [PMID: 38519875 DOI: 10.1111/1462-2920.16611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 03/01/2024] [Indexed: 03/25/2024]
Abstract
Host-associated microbial communities are shaped by myriad factors ranging from host conditions, environmental conditions and other microbes. Disentangling the ecological impact of each of these factors can be particularly difficult as many variables are correlated. Here, we leveraged earthquake-induced changes in host population structure to assess the influence of population crashes on marine microbial ecosystems. A large (7.8 magnitude) earthquake in New Zealand in 2016 led to widespread coastal uplift of up to ~6 m, sufficient to locally extirpate some intertidal southern bull kelp populations. These uplifted populations are slowly recovering, but remain at much lower densities than at nearby, less-uplifted sites. By comparing the microbial communities of the hosts from disturbed and relatively undisturbed populations using 16S rRNA gene amplicon sequencing, we observed that disturbed host populations supported higher functional, taxonomic and phylogenetic microbial beta diversity than non-disturbed host populations. Our findings shed light on microbiome ecological assembly processes, particularly highlighting that large-scale disturbances that affect host populations can dramatically influence microbiome structure. We suggest that disturbance-induced changes in host density limit the dispersal opportunities of microbes, with host community connectivity declining with the density of host populations.
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Affiliation(s)
- William S Pearman
- Department of Marine Science, University of Otago, Dunedin, New Zealand
- Department of Microbiology and Immunology, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
- National Institute of Water and Atmospheric Research Ltd, Auckland, New Zealand
| | - Sergio E Morales
- Department of Microbiology and Immunology, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
| | - Felix Vaux
- National Institute of Water and Atmospheric Research Ltd, Auckland, New Zealand
- Department of Zoology, University of Otago, Dunedin, New Zealand
| | - Neil J Gemmell
- Department of Anatomy, School of Biomedical Sciences, University of Otago, Dunedin, New Zealand
| | - Ceridwen I Fraser
- Department of Marine Science, University of Otago, Dunedin, New Zealand
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7
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Tedesco P, Balzano S, Coppola D, Esposito FP, de Pascale D, Denaro R. Bioremediation for the recovery of oil polluted marine environment, opportunities and challenges approaching the Blue Growth. MARINE POLLUTION BULLETIN 2024; 200:116157. [PMID: 38364643 DOI: 10.1016/j.marpolbul.2024.116157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 02/08/2024] [Accepted: 02/09/2024] [Indexed: 02/18/2024]
Abstract
The Blue Growth strategy promises a sustainable use of marine resources for the benefit of the society. However, oil pollution in the marine environment is still a serious issue for human, animal, and environmental health; in addition, it deprives citizens of the potential economic and recreational advantages in the affected areas. Bioremediation, that is the use of bio-resources for the degradation of pollutants, is one of the focal themes on which the Blue Growth aims to. A repertoire of marine-derived bio-products, biomaterials, processes, and services useful for efficient, economic, low impact, treatments for the recovery of oil-polluted areas has been demonstrated in many years of research around the world. Nonetheless, although bioremediation technology is routinely applied in soil, this is not still standardized in the marine environment and the potential market is almost underexploited. This review provides a summary of opportunities for the exploiting and addition of value to research products already validated. Moreover, the review discusses challenges that limit bioremediation in marine environment and actions that can facilitate the conveying of valuable products/processes towards the market.
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Affiliation(s)
- Pietro Tedesco
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Sergio Balzano
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Daniela Coppola
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Fortunato Palma Esposito
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy
| | - Donatella de Pascale
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via Ammiraglio Acton, 55, 80133 Naples, Italy; Institute of Biochemistry and Cellular Biology, National Research Council, Via Pietro Castellino 111, 80131 Naples, Italy.
| | - Renata Denaro
- Water Research Institute (IRSA), National Research Council (CNR), 00010 Montelibretti Rome, Italy.
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8
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Fenibo EO, Nkuna R, Matambo T. Impact of artisanal refining activities on bacterial diversity in a Niger Delta fallow land. Sci Rep 2024; 14:3866. [PMID: 38365802 PMCID: PMC10873323 DOI: 10.1038/s41598-024-53147-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 01/29/2024] [Indexed: 02/18/2024] Open
Abstract
Hydrocarbon pollution is a major ecological problem facing oil-producing countries, especially in the Niger Delta region of Nigeria. In this study, a site that had been previously polluted by artisanal refining activity was investigated using 16S rRNA Illumina high-throughput sequencing technology and bioinformatics tools. These were used to investigate the bacterial diversity in soil with varying degrees of contamination, determined with a gas chromatography-flame ionization detector (GC-FID). Soil samples were collected from a heavily polluted (HP), mildly polluted (MP), and unpolluted (control sample, CS) portion of the study site. DNA was extracted using the Zymo Research (ZR) Fungi/Bacteria DNA MiniPrep kit, followed by PCR amplification and agarose gel electrophoresis. The microbiome was characterized based on the V3 and V4 hypervariable regions of the 16S rRNA gene. QIIME (Quantitative Insights Into Microbial Ecology) 2 software was used to analyse the sequence data. The final data set covered 20,640 demultiplexed high-quality reads and a total of 160 filtered bacterial OTUs. Proteobacteria dominated samples HP and CS, while Actinobacteria dominated sample MP. Denitratisoma, Pseudorhodoplanes, and Spirilospora were the leading genera in samples HP, CS, and MP respectively. Diversity analysis indicated that CS [with 25.98 ppm of total petroleum hydrocarbon (TPH)] is more diverse than HP (with 490,630 ppm of TPH) and MP (with 5398 ppm of TPH). A functional prediction study revealed that six functional modules dominated the dataset, with metabolism covering up to 70%, and 11 metabolic pathways. This study demonstrates that a higher hydrocarbon concentration in soil adversely impacts microbial diversity, creating a narrow bacterial diversity dominated by hydrocarbon-degrading species, in addition to the obvious land and ecosystem degradation caused by artisanal refining activities. Overall, the artisanal refining business is significantly driving ecosystem services losses in the Niger Delta, which calls for urgent intervention, with focus on bioremediation.
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Affiliation(s)
- Emmanuel Oliver Fenibo
- World Bank Africa Centre of Excellence for Oilfield Chemical Research, University of Port Harcourt, Choba, Rivers State, Nigeria.
| | - Rosina Nkuna
- Department of Biotechnology, Faculty of Applied and Computer Sciences, Vaal University of Technology, Vanderbijlpark 1900, Gauteng, South Africa
- Centre for Competence in Environmental Biotechnology, College of Animal and Environmental Science, University of South Africa, Florida Science Campus, Roodepoort, South Africa
| | - Tonderayi Matambo
- Centre for Competence in Environmental Biotechnology, College of Animal and Environmental Science, University of South Africa, Florida Science Campus, Roodepoort, South Africa
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9
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Antonioli R, de Faria Poloni J, Riveros Escalona MA, Dorn M. Functional response of microbial communities in lab-controlled oil-contaminated marine sediment. Mol Omics 2023; 19:756-768. [PMID: 37477619 DOI: 10.1039/d3mo00007a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/22/2023]
Abstract
Crude oil contamination is one of the biggest problems in modern society. As oil enters into contact with the environment, especially if the point of contact is a body of water, it begins a weathering process by mixing and spreading. This is dangerous to local living organisms' communities and can impact diversity. However, despite unfavorable conditions, some microorganisms in these environments can survive using hydrocarbons as a nutrient source. Thus, understanding the local community dynamics of contaminated areas is essential. In this work, we analyzed the 16S rRNA amplicon sequencing and metatranscriptomic data of uncontaminated versus contaminated shallow marine sediment from publicly available datasets. We investigated the local population's taxonomic composition, species diversity, and fluctuations over time. Co-expression analysis coupled with functional enrichment showed us a prevalence of hydrocarbon-degrading functionality while keeping a distinct transcriptional profile between the late stages of oil contamination and the uncontaminated control. Processes related to the degradation of aromatic compounds and the metabolism of propanoate and butanoate were coupled with evidence of enhanced activity such as flagellar assembly and two-component system. Many enzymes of the anaerobic toluene degradation pathways were also enriched in our results. Furthermore, our diversity and taxonomical analyses showed a prevalence of the class Desulfobacteria, indicating interesting targets for bioremediation applications on marine sediment.
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Affiliation(s)
- Regis Antonioli
- Center for Biotechnology, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil
| | - Joice de Faria Poloni
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, 90619-900, Porto Alegre, Brazil
| | | | - Márcio Dorn
- Center for Biotechnology, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil
- National Institute of Science and Technology - Forensic Science, Porto Alegre, Brazil
- Institute of Informatics, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil.
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10
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Lincoln S, Chowdhury P, Posen PE, Robin RS, Ramachandran P, Ajith N, Harrod O, Hoehn D, Harrod R, Townhill BL. Interaction of climate change and marine pollution in Southern India: Implications for coastal zone management practices and policies. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 902:166061. [PMID: 37543339 DOI: 10.1016/j.scitotenv.2023.166061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Revised: 08/01/2023] [Accepted: 08/02/2023] [Indexed: 08/07/2023]
Abstract
Climate change and marine litter are inextricably linked, and their interaction manifests differently depending on the specific environmental and biological characteristics, and other human activities taking place. The negative impacts resulting from those synergistic interactions are threatening coastal and marine ecosystems and the many goods and services they provide. This is particularly pervasive in the coastal zone of the Indian subcontinent. India is already experiencing severe climate change impacts, which are projected to worsen in the future. At the same time, the country is gripped by a litter crisis that is overwhelming authorities and communities and hindering the country's sustainable development goals. The coastal environment and communities of the southern states of Kerala and Tamil Nadu are particularly vulnerable to the impacts of climate change. While these state governments and authorities are stepping up efforts to improve the management of their coastal zones, the scale and severity of these issues are mounting. Here we review the combined effects of climate change and marine litter pollution in Southern India, focusing on the Gulf of Mannar Reserve in Tamil Nadu and the Malabar Coast in Kerala. Finally, we discuss effective management options that could help improve resilience and sustainability.
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Affiliation(s)
- Susana Lincoln
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom.
| | - Piyali Chowdhury
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
| | - Paulette E Posen
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
| | - R S Robin
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - Purvaja Ramachandran
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - Nithin Ajith
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - Olivia Harrod
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
| | - Danja Hoehn
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
| | - Richard Harrod
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
| | - Bryony L Townhill
- International Marine Climate Change Centre, The Centre for Environment, Fisheries and Aquaculture Science (Cefas), Cefas Laboratory, Pakefield Road, Lowestoft, Suffolk NR33 0HT, United Kingdom
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11
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Al-Marri S, Eldos H, Ashfaq M, Saeed S, Skariah S, Varghese L, Mohamoud Y, Sultan A, Raja M. Isolation, identification, and screening of biosurfactant-producing and hydrocarbon-degrading bacteria from oil and gas industrial waste. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2023; 39:e00804. [PMID: 37388572 PMCID: PMC10300049 DOI: 10.1016/j.btre.2023.e00804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Revised: 05/23/2023] [Accepted: 06/10/2023] [Indexed: 07/01/2023]
Abstract
Qatar is one of the biggest oil and gas producers in the world, coupled with it is challenging environmental conditions (high average temperature: >40 °C, low annual rainfall: 46.71 mm, and high annual evaporation rate: 2200 mm) harbors diverse microbial communities that are novel and robust, with the potential to biodegrade hydrocarbons. In this study, we collected hydrocarbon contaminated sludge, wastewater and soil samples from oil and gas industries in Qatar. Twenty-six bacterial strains were isolated in the laboratory from these samples using high saline conditions and crude oil as the sole carbon source. A total of 15 different bacterial genera were identified in our study that have not been widely reported in the literature or studied for their usage in the biodegradation of hydrocarbons. Interestingly, some of the bacteria that were identified belonged to the same genus however, demonstrated variable growth rates and biosurfactant production. This indicates the possibility of niche specialization and specific evolution to acquire competitive traits for better survival. The most potent strain EXS14, identified as Marinobacter sp., showed the highest growth rate in the oil-containing medium as well as the highest biosurfactant production. When this strain was further tested for biodegradation of hydrocarbons, the results showed that it was able to degrade 90 to 100% of low and medium molecular weight hydrocarbons and 60 to 80% of high molecular weight (C35 to C50) hydrocarbons. This study offers many promising leads for future studies of microbial species and their application for the treatment of hydrocarbon contaminated wastewater and soil in the region and in other areas with similar environmental conditions.
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Affiliation(s)
| | | | | | - S. Saeed
- ExxonMobil Research Qatar, Doha, Qatar
| | - S. Skariah
- Department of Microbiology and Immunology, Weill Cornell Medicine - Qatar, Education City, Qatar Foundation, P. O. Box 24144, Doha, Qatar
| | | | - Y.A. Mohamoud
- Department of Microbiology and Immunology, Weill Cornell Medicine - Qatar, Education City, Qatar Foundation, P. O. Box 24144, Doha, Qatar
| | - A.A. Sultan
- Department of Microbiology and Immunology, Weill Cornell Medicine - Qatar, Education City, Qatar Foundation, P. O. Box 24144, Doha, Qatar
| | - M.M. Raja
- Qatargas Operating Company, Doha, Qatar
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12
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Ganesh Kumar A, Manisha D, Nivedha Rajan N, Sujitha K, Magesh Peter D, Kirubagaran R, Dharani G. Biodegradation of phenanthrene by piezotolerant Bacillus subtilis EB1 and genomic insights for bioremediation. MARINE POLLUTION BULLETIN 2023; 194:115151. [PMID: 37453166 DOI: 10.1016/j.marpolbul.2023.115151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 04/28/2023] [Accepted: 06/04/2023] [Indexed: 07/18/2023]
Abstract
A marine strain B. subtilis EB1, isolated from Equator water, showed excellent degradation towards a wide range of hydrocarbons. Degradation studies revealed dense growth with 93 % and 83 % removal of phenanthrene within 72 h at 0.1 and 20 MPa, respectively. The identification of phenanthrene degradation metabolites by GC-MS combined with its whole genome analysis provided the pathway involved in the degradation process. Whole genome sequencing indicated a genome size of 3,983,989 bp with 4331 annotated genes. The genome provided the genetic compartments, which includes monooxygenase, dioxygenase, dehydrogenase, biosurfactant synthesis catabolic genes for the biodegradation of aromatic compounds. Detailed COG and KEGG pathway analysis confirmed the genes involved in the oxygenation reaction of hydrocarbons, piezotolerance, siderophores, chemotaxis and transporter systems which were specific to adaptation for survival in extreme marine habitat. The results of this study will be a key to design an optimal bioremediation strategy for oil contaminated extreme marine environment.
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Affiliation(s)
- A Ganesh Kumar
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India.
| | - D Manisha
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
| | - N Nivedha Rajan
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
| | - K Sujitha
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
| | - D Magesh Peter
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
| | - R Kirubagaran
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
| | - G Dharani
- Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai 600100, Tamil Nadu, India
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Shih CY, Chen SY, Hsu CR, Chin CH, Chiu WC, Chang MH, Kang LK, Yang CH, Pai TW, Hu CH, Hsu PH, Tzou WS. Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean. PLoS One 2023; 18:e0284022. [PMID: 37294811 PMCID: PMC10256201 DOI: 10.1371/journal.pone.0284022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 03/21/2023] [Indexed: 06/11/2023] Open
Abstract
Pollution in human-made fishing ports caused by petroleum from boats, dead fish, toxic chemicals, and effluent poses a challenge to the organisms in seawater. To decipher the impact of pollution on the microbiome, we collected surface water from a fishing port and a nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean. By employing 16S rRNA gene amplicon sequencing and whole-genome shotgun sequencing, we discovered that Rhodobacteraceae, Vibrionaceae, and Oceanospirillaceae emerged as the dominant species in the fishing port, where we found many genes harboring the functions of antibiotic resistance (ansamycin, nitroimidazole, and aminocoumarin), metal tolerance (copper, chromium, iron and multimetal), virulence factors (chemotaxis, flagella, T3SS1), carbohydrate metabolism (biofilm formation and remodeling of bacterial cell walls), nitrogen metabolism (denitrification, N2 fixation, and ammonium assimilation), and ABC transporters (phosphate, lipopolysaccharide, and branched-chain amino acids). The dominant bacteria at the nearby offshore island (Alteromonadaceae, Cryomorphaceae, Flavobacteriaceae, Litoricolaceae, and Rhodobacteraceae) were partly similar to those in the South China Sea and the East China Sea. Furthermore, we inferred that the microbial community network of the cooccurrence of dominant bacteria on the offshore island was connected to dominant bacteria in the fishing port by mutual exclusion. By examining the assembled microbial genomes collected from the coastal seawater of the fishing port, we revealed four genomic islands containing large gene-containing sequences, including phage integrase, DNA invertase, restriction enzyme, DNA gyrase inhibitor, and antitoxin HigA-1. In this study, we provided clues for the possibility of genomic islands as the units of horizontal transfer and as the tools of microbes for facilitating adaptation in a human-made port environment.
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Affiliation(s)
- Chi-Yu Shih
- Bachelor Degree Program in Marine Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Taiwan Ocean Genome Center, National Taiwan Ocean University, Keelung, Taiwan
| | - Shiow-Yi Chen
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Chun-Ru Hsu
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Ching-Hsiang Chin
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
| | - Wei-Chih Chiu
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
| | | | - Lee-Kuo Kang
- Bachelor Degree Program in Marine Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
| | - Cing-Han Yang
- Department of Computer Science and Information Engineering, National Taipei University of Technology, Taipei, Taiwan
- Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan
| | - Tun-Wen Pai
- Department of Computer Science and Information Engineering, National Taipei University of Technology, Taipei, Taiwan
- Department of Computer Science and Engineering, National Taiwan Ocean University, Keelung, Taiwan
| | - Chin-Hwa Hu
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Pang-Hung Hsu
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
| | - Wen-Shyong Tzou
- Taiwan Ocean Genome Center, National Taiwan Ocean University, Keelung, Taiwan
- Departent of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan
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14
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Xia M, Chen B, Fan G, Weng S, Qiu R, Hong Z, Yan Z. The shifting research landscape for PAH bioremediation in water environment: a bibliometric analysis on three decades of development. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023:10.1007/s11356-023-27404-4. [PMID: 37150789 DOI: 10.1007/s11356-023-27404-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 04/29/2023] [Indexed: 05/09/2023]
Abstract
Polycyclic aromatic hydrocarbons (PAHs) with their carcinogenic, teratogenic, and mutagenic effects can cause great damage to the ecosystem and public health when present in water. With bioremediation, PAH contamination in water environment can be greatly reduced in an eco-friendly manner. It has thus become the research focus for many environmental scientists. In this study, a bibliometric analysis on three-decade (1990-2022) development of PAH bioremediation in water environment was conducted from temporal and spatial dimensions using CiteSpace. A total of 2480 publications, obtained from Web of Science core collection database, were used to explore the basic characteristics, hotspots, and prospects of the research area. The results showed that (1) bioremediation/biodegradation of PAHs in water environment has been getting researchers' attention since 1990, and is gaining even more traction as time goes on. (2) In terms of countries, China and the USA were the major contributors in this research area, while at the institutional level, the Chinese Academy of Sciences has produced the most research results. However, international cooperation across regions was lacking in the field. (3) Environment Science and Technology, Chemosphere, Applied and Environment Microbiology, Journal of Hazardous Materials, and Environment Pollution were the 5 most cited journals in this field. (4) There were three major stages the field has gone through, each with distinct research hotspots, including initial stage (1990-1994), mechanism investigation (1995-2000), and application exploration (2001-2010; 2011-2022). Finally, research perspectives were proposed, covering three directions, namely, bioavailability, immobilization, and viable but nonculturable (VBNC) bacteria.
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Affiliation(s)
- Mingqian Xia
- College of Civil Engineering, Fuzhou University, Fuzhou, 350116, China
| | - Bo Chen
- College of Civil Engineering, Fuzhou University, Fuzhou, 350116, China
| | - Gongduan Fan
- College of Civil Engineering, Fuzhou University, Fuzhou, 350116, China.
| | - Sunxian Weng
- Electric Power Research Institute of State Grid Fujian Electric Power Co., Ltd., Fuzhou, 350007, China
| | - Rongpeng Qiu
- College of Civil Engineering, Fuzhou University, Fuzhou, 350116, China
| | - Zhanglin Hong
- China Construction Third Bureau First Engineering Co., Ltd., Hubei, 430040, China
| | - Zhongsen Yan
- College of Civil Engineering, Fuzhou University, Fuzhou, 350116, China
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15
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Soares MO, Rabelo EF. Severe ecological impacts caused by one of the worst orphan oil spills worldwide. MARINE ENVIRONMENTAL RESEARCH 2023; 187:105936. [PMID: 36958200 DOI: 10.1016/j.marenvres.2023.105936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 02/22/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
Orphan oil spills pose a severe risk to ocean sustainability; however, they are understudied. We provide the first synthetic assessment of short-term ecological impacts of the most extensive oil spill in tropical oceans, which affected 2900 km of Brazil's coastline in 2019. Oil ingestion, changes in sex ratio and size of animals, morphological abnormalities of larvae and eggs, mutagenic, behavioral, and morphological alterations, contamination by polycyclic aromatic hydrocarbons, and mortality were detected. A decrease in species richness and abundance of oil-sensitive animals, an increase in opportunistic and oil-tolerant organisms, and simplification of communities was observed. The impacts were observed in sponges, corals, mollusks, crustaceans, polychaetes, echinoderms, turtles, birds, fish, and mammals. The majority of studies were conducted on bioindicator substrate-associated organisms, with 68.4% of the studies examining the benthos, 21.2% the nekton, and 10.4% the plankton. Moreover, most of the current short-term impacts assessment studies were focused on the species level (66.7%), with fewer studies on the community level (19%), and even fewer on oil-affected ecosystems (14.3%). Oil-related impacts were detected in five sensitive habitats, including blue-carbon ecosystems (e.g., mangroves and seagrass beds) and coastal reefs. These results call for the development of new ocean-basin observation systems for orphan spills. Finally, we discuss how these mysterious oil spills from unknown sources pose a risk to sustainable development goals and ocean-based actions to tackle global climate change.
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Affiliation(s)
- Marcelo O Soares
- Instituto de Ciências do Mar (LABOMAR), Universidade Federal do Ceará (UFC), Fortaleza, Brazil; Reef Systems Group, Leibniz Centre for Tropical Marine Research (ZMT), Bremen, Germany; Center for Marine and Environmental Studies (CMES), University of the Virgin Islands, St. Thomas, U.S. Virgin Islands.
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16
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Subash A, Naebe M, Wang X, Kandasubramanian B. Biopolymer - A sustainable and efficacious material system for effluent removal. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130168. [PMID: 36302289 DOI: 10.1016/j.jhazmat.2022.130168] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 10/03/2022] [Accepted: 10/08/2022] [Indexed: 06/16/2023]
Abstract
Undesired discharge of various effluents directly into the aquatic ecosystem can adversely affect water quality, endangering aquatic and terrestrial flora and fauna. Therefore, the conceptual design and fabrication of a sustainable system for alleviating the harmful toxins that are discharged into the atmosphere and water bodies using a green sustainable approach is a fundamental standpoint. Adsorptive removal of toxins (∼99% removal efficacy) is one of the most attractive and facile approaches for cleaner technologies that remediate the environmental impacts and provide a safe operating space. Recently, the introduction of biopolymers for the adsorptive abstraction of toxins from water has received considerable attention due to their eclectic accessibility, biodegradability, biocompatibility, non-toxicity, and enhanced removal efficacy (∼ 80-90% for electrospun fibers). This review summarizes the recent literature on the biosorption of various toxins by biopolymers and the possible interaction between the adsorbent and adsorbate, providing an in-depth perspective of the adsorption mechanism. Most of the observed results are explained in terms of (1) biopolymers classification and application, (2) toxicity of various effluents, (3) biopolymers in wastewater treatment and their removal mechanism, and (4) regeneration, reuse, and biodegradation of the adsorbent biopolymer.
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Affiliation(s)
- Alsha Subash
- Institute for Frontier Materials, Deakin University, Waurn Ponds Campus, Geelong, Victoria 3216, Australia; Nano Surface Texturing, Department of Metallurgical and Materials Engineering, Defence Institute of Advanced Technology (DU), Ministry of Defence, Girinagar, Pune 411025, Maharashtra, India
| | - Minoo Naebe
- Institute for Frontier Materials, Deakin University, Waurn Ponds Campus, Geelong, Victoria 3216, Australia
| | - Xungai Wang
- School of Fashion and Textiles, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong
| | - Balasubramanian Kandasubramanian
- Nano Surface Texturing, Department of Metallurgical and Materials Engineering, Defence Institute of Advanced Technology (DU), Ministry of Defence, Girinagar, Pune 411025, Maharashtra, India.
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17
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Rabbani G, Ahmad E, Ahmad A, Khan RH. Structural features, temperature adaptation and industrial applications of microbial lipases from psychrophilic, mesophilic and thermophilic origins. Int J Biol Macromol 2023; 225:822-839. [PMID: 36402388 DOI: 10.1016/j.ijbiomac.2022.11.146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 11/13/2022] [Accepted: 11/14/2022] [Indexed: 11/18/2022]
Abstract
Microbial lipases are very prominent biocatalysts because of their ability to catalyze a wide variety of reactions in aqueous and non-aqueous media. Here microbial lipases from different origins (psychrophiles, mesophiles, and thermophiles) have been reviewed. This review emphasizes an update of structural diversity in temperature adaptation and industrial applications, of psychrophilic, mesophilic, and thermophilic lipases. The microbial origins of lipases are logically dynamic, proficient, and also have an extensive range of industrial uses with the manufacturing of altered molecules. It is therefore of interest to understand the molecular mechanisms of adaptation to temperature in occurring lipases. However, lipases from extremophiles (psychrophiles, and thermophiles) are widely used to design biotransformation reactions with higher yields, fewer byproducts, or useful side products and have been predicted to catalyze those reactions also, which otherwise are not possible with the mesophilic lipases. Lipases as a multipurpose biological catalyst have given a favorable vision in meeting the needs of several industries such as biodiesel, foods, and drinks, leather, textile, detergents, pharmaceuticals, and medicals.
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Affiliation(s)
- Gulam Rabbani
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh 202 002, India; Department of Medical Biotechnology, Yeungnam University, 280 Daehak-ro, Gyeongsan, Gyeongbuk 38541, Republic of Korea.
| | - Ejaz Ahmad
- Department of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, United States of America
| | - Abrar Ahmad
- Department of Biochemistry, Faculty of Science, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Rizwan Hasan Khan
- Interdisciplinary Biotechnology Unit, Aligarh Muslim University, Aligarh 202 002, India.
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18
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Balachandar K, Viswanathan C, Robin RS, Abhilash KR, Sankar R, Deepak Samuel V, Purvaja R, Ramesh R. Benthic foraminifera as an environmental proxy for pollutants along the coast of Chennai, India. CHEMOSPHERE 2023; 310:136824. [PMID: 36241111 DOI: 10.1016/j.chemosphere.2022.136824] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 09/21/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Benthic foraminifera are increasingly used as an indicator of environmental disturbance. Their sensitivities to pollutants can be reflected by changes in assemblage, which can provide useful information about ecosystem health. This study aimed to investigate the impact of organic and inorganic pollutants on the benthic ecology of the Chennai coast, with a focus on the 2017 oil spill caused by the collision of two ships. Sediment samples collected from five distinct zones along the coast were analysed for pollutants such as polycyclic aromatic hydrocarbons (PAHs), total petroleum hydrocarbons (TPH), heavy metals (Cr, Cd, Pb) and total organic carbon (TOC). The maximum concentrations of Cr (137 μg/g), Cd (6.93 μg/g) and Pb (34.2 μg/g), as well as TPH (84.3 μg/g) and PAHs (227 ng/g), were observed. A total of 47 species of foraminifera were identified in this study, of which 12 were morphologically abnormal. In the low-impact zone, the species diversity index (H') was higher. TPH and PAH concentrations were positively associated with abnormal species. Pollution-resistant foraminifera species include Ammonia tepida, Elphidium discoidale, and Quinqueloculina lamarckiana, while opportunistic foraminifera include Pararotalia curryi, Nonionella stella, Rosalina globularis, and Spirillina vivipara. PAHs and heavy metals were adversely correlated with foraminiferal abundance, while TPH was positively correlated. To assess the response of the benthic ecosystem to hydrocarbon pollution, indices such as the Foraminiferal Index of Environmental Impact (FIEI), Exponential (H'bc) index and the Foraminiferal Abnormality Index (FAI) were used as environmental health proxies. FIEI, exp(H'bc) and FAI values show the impact of hydrocarbon pollution to an extent along the northern Chennai coast.
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Affiliation(s)
- K Balachandar
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - C Viswanathan
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - R S Robin
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - K R Abhilash
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - R Sankar
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - V Deepak Samuel
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India.
| | - R Purvaja
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
| | - R Ramesh
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai, 600 025, Tamil Nadu, India
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19
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Gomez NCF, Onda DFL. Potential of sediment bacterial communities from Manila Bay (Philippines) to degrade low-density polyethylene (LDPE). Arch Microbiol 2022; 205:38. [PMID: 36565350 DOI: 10.1007/s00203-022-03366-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Revised: 02/02/2022] [Accepted: 12/02/2022] [Indexed: 12/25/2022]
Abstract
The persistence of plastics and its effects in different environments where they accumulate, particularly in coastal areas, is of serious concern. These plastics exhibit signs of degradation, possibly mediated by microorganisms. In this study, we investigated the potential of sediment microbial communities from Manila Bay, Philippines, which has a severe plastics problem, to degrade low-density polyethylene (LDPE). Plastics in selected sites were quantified and sediment samples from sites with the lowest and highest plastic accumulation were collected. These sediments were then introduced and incubated with LDPE in vitro for a period of 91 days. Fourier transform infrared spectroscopy detected the appearance of carbonyl and vinyl products on the plastic surface, indicating structural surface modifications attributed to polymer degradation. Communities attached to the plastics were profiled using high-throughput sequencing of the V4-V5 region of the 16S rRNA gene. Members of the phylum Proteobacteria dominated the plastic surface throughout the experiment. Several bacterial taxa associated with hydrocarbon degradation were also enriched, with some taxa positively correlating with the biodegradation indices, suggesting potential active roles in the partial biodegradation of plastics. Other taxa were also present, which might be consuming by-products or providing nourishment for other groups, indicating synergy in utilizing the plastic as the main carbon source and creation of a microenvironment within the plastics biofilm. This study showed that sediment microbes from Manila Bay may have naturally occurring microbial groups potentially capable of partially degrading plastics, supporting previous studies that the biodegradation potential for plastics is ubiquitously present in marine microbial assemblages.
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Affiliation(s)
- Norchel Corcia F Gomez
- Microbial Oceanography Laboratory, The Marine Science Institute, University of the Philippines Diliman, Velasquez St., 1101, Quezon City, Philippines
| | - Deo Florence L Onda
- Microbial Oceanography Laboratory, The Marine Science Institute, University of the Philippines Diliman, Velasquez St., 1101, Quezon City, Philippines.
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20
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Ashok A, Agusti S. Contrasting sensitivity among oligotrophic marine microbial communities to priority PAHs. CHEMOSPHERE 2022; 309:136490. [PMID: 36210574 DOI: 10.1016/j.chemosphere.2022.136490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Revised: 09/14/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
Oligotrophic areas represent a large proportion of the oceans, wherein microbial food webs largely determine carbon flux dynamics and biogeochemical cycles. However, little is known regarding the sensitivity of microbial planktonic communities to pollutants in such areas. Organic pollutants such as polycyclic aromatic hydrocarbons (PAH/s) are toxic oil derivatives that occur as complex mixtures and reach marine environments through different sources. Therefore, our study analyzed the PAH tolerance of natural photosynthetic and heterotrophic bacteria and eukaryotes from the oligotrophic Red Sea, which is uniquely susceptible to high oil contamination. Natural communities sampled from the surface layer were exposed to a concentration gradient of a mixture of 16 priority PAHs at in situ conditions for 48 h. The populations of the dominant picocyanobacteria Synechococcus sp., picophytoeukaryotes, and low nucleic acid (LNA) bacteria decreased upon exposure to PAHs in a strong dose-dependent manner. Chlorophyll-a, which was measured as an indicator of the total autotrophic community response, also decreased substantially. High nucleic acid (HNA) bacteria, however, exhibited lower growth inhibition (<50%). The lethal concentration (LC10) thresholds to the 16-PAH mixture demonstrated contrasting sensitivities among the microbial communities studied increasing from picoeukaryotes (5.98 ± 2.08 μg L-1) < chlorophyll-a (19.51 ± 8.11 μg L-1) < LNA bacteria (23.63 ± 10.64 μg L-1) < Synechococcus sp. (26.77 ± 13.34 μg L-1) < HNA bacteria (97.13 ± 17.28 μg L-1). The sensitivity of Red Sea Synechococcus and picophytoeukaryotes to the 16-PAH mixture was between 2 and 6.5 times higher compared to single PAH compounds tested previously. However, some populations of HNA bacteria and Synechococcus sp., were highly tolerant, suggesting an adaptation to chronic pollution. Concerningly, the LC10 toxicity thresholds approached the ambient PAH concentrations in the Red Sea, suggesting that environmental oil pollution actively shapes the microbial community structures in the region.
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Affiliation(s)
- Ananya Ashok
- Red Sea Research Center, King Abdullah University of Science and Technology, Saudi Arabia.
| | - Susana Agusti
- Red Sea Research Center, King Abdullah University of Science and Technology, Saudi Arabia
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21
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Oladi M, Leontidou K, Stoeck T, Shokri MR. Environmental DNA-based profiling of benthic bacterial and eukaryote communities along a crude oil spill gradient in a coral reef in the Persian Gulf. MARINE POLLUTION BULLETIN 2022; 184:114143. [PMID: 36182786 DOI: 10.1016/j.marpolbul.2022.114143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 09/09/2022] [Accepted: 09/14/2022] [Indexed: 06/16/2023]
Abstract
Coral reef ecosystems in the Persian Gulf are frequently exposed to crude oil spills. We investigated benthic bacterial and eukaryote community structures at such coral reef sites subjected to different degrees of polycyclic aromatic hydrocarbon (PAH) pollution using environmental DNA (eDNA) metabarcoding. Both bacterial and eukaryote communities responded with pronounced shifts to crude oil pollution and distinguished control sites, moderately and heavily impacted sites with significant confidentiality. The observed community patterns were predominantly driven by Alphaproteobacteria and metazoans. Among these, we identified individual genera that were previously linked to oil spill stress, but also taxa, for which a link to hydrocarbon still remains to be established. Considering the lack of an early-warning system for the environmental status of coral reef ecosystems exposed to frequent crude-oil spills, our results encourage further research towards the development of an eDNA-based biomonitoring tool that exploits benthic bacterial and eukaryote communities as bioindicators.
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Affiliation(s)
- Mahshid Oladi
- Technische Universität Kaiserslautern, Ecology Group, Kaiserslautern, Germany; Department of Animal Sciences and Marine Biology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, G.C., Evin, Tehran, Iran
| | - Kleopatra Leontidou
- Technische Universität Kaiserslautern, Ecology Group, Kaiserslautern, Germany
| | - Thorsten Stoeck
- Technische Universität Kaiserslautern, Ecology Group, Kaiserslautern, Germany
| | - Mohammad Reza Shokri
- Department of Animal Sciences and Marine Biology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University, G.C., Evin, Tehran, Iran.
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22
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Nassar HN, Rabie AM, Abu Amr SS, El-Gendy NS. Kinetic and statistical perspectives on the interactive effects of recalcitrant polyaromatic and sulfur heterocyclic compounds and in-vitro nanobioremediation of oily marine sediment at microcosm level. ENVIRONMENTAL RESEARCH 2022; 209:112768. [PMID: 35085558 DOI: 10.1016/j.envres.2022.112768] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 01/10/2022] [Accepted: 01/17/2022] [Indexed: 06/14/2023]
Abstract
A halotolerant biosurfactant producer Pseudomonas aeruginosa strain NSH3 (NCBI Gene Bank Accession No. MN149622) was isolated to degrade high concentrations of recalcitrant polyaromatic hydrocarbons (PAHs) and polyaromatic heterocyclic sulfur compounds (PASHs). In biphasic batch bioreactors, the biodegradation and biosurfactant-production activities of NSH3 have been significantly enhanced (p < 0.0001) by its decoration with eco-friendly prepared magnetite nanoparticles (MNPs). On an artificially contaminated sediment microcosm level, regression modeling and statistical analysis based on a 23 full factorial design of experiments were trendily applied to provide insights into the interactive impacts of such pollutants. MNPs-coated NSH3 were also innovatively applied for nanobioremediation (NBR) of in-vitro diesel oil-polluted sediment microcosms. Gravimetric, chromatographic, and microbial respiratory analyses proved the significantly enhanced biodegradation capabilities of MNPs-coated NSH3 (p < 0.001) and the complete mineralization of various recalcitrant diesel oil components. Kinetic analyses showed that the biodegradation of iso- and n-alkanes was best fitted with a second-order kinetic model equation. Nevertheless, PAHs and PASHs in biphasic batch bioreactors and sediment microcosms followed the first-order kinetic model equation. Sustainable NBR overcome the toxicity of low molecular weight hydrocarbons, mass transfer limitation, and steric hindrance of hydrophobic recalcitrant high molecular weight hydrocarbons and alkylated polyaromatic compounds.
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Affiliation(s)
- Hussein N Nassar
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt; Center of Excellence, October University for Modern Sciences and Arts (MSA), 6(th) of October City, Giza, PO, 12566, Egypt
| | - Abdelrahman M Rabie
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt
| | - Salem S Abu Amr
- Department of Chemical and Environmental Engineering, Faculty of Engineering, Karabuk University, Demir Campus, Karabuk, PO, 78050, Turkey
| | - Nour Sh El-Gendy
- Egyptian Petroleum Research Institute (EPRI), Nasr City, Cairo, PO, 11727, Egypt; Center of Excellence, October University for Modern Sciences and Arts (MSA), 6(th) of October City, Giza, PO, 12566, Egypt.
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Taxonomic and functional trait-based approaches suggest that aerobic and anaerobic soil microorganisms allow the natural attenuation of oil from natural seeps. Sci Rep 2022; 12:7245. [PMID: 35508504 PMCID: PMC9068923 DOI: 10.1038/s41598-022-10850-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Accepted: 03/31/2022] [Indexed: 12/02/2022] Open
Abstract
Natural attenuation, involving microbial adaptation, helps mitigating the effect of oil contamination of surface soils. We hypothesized that in soils under fluctuating conditions and receiving oil from seeps, aerobic and anaerobic bacteria as well as fungi could coexist to efficiently degrade hydrocarbons and prevent the spread of pollution. Microbial community diversity was studied in soil longitudinal and depth gradients contaminated with petroleum seeps for at least a century. Hydrocarbon contamination was high just next to the petroleum seeps but this level drastically lowered from 2 m distance and beyond. Fungal abundance and alpha-diversity indices were constant along the gradients. Bacterial abundance was constant but alpha-diversity indices were lower next to the oil seeps. Hydrocarbon contamination was the main driver of microbial community assemblage. 281 bacterial OTUs were identified as indicator taxa, tolerant to hydrocarbon, potentially involved in hydrocarbon-degradation or benefiting from the degradation by-products. These taxa belonging to lineages of aerobic and anaerobic bacteria, have specific functional traits indicating the development of a complex community adapted to the biodegradation of petroleum hydrocarbons and to fluctuating conditions. Fungi are less impacted by oil contamination but few taxa should contribute to the metabolic complementary within the microbial consortia forming an efficient barrier against petroleum dissemination.
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Omics-based ecosurveillance for the assessment of ecosystem function, health, and resilience. Emerg Top Life Sci 2022; 6:185-199. [PMID: 35403668 PMCID: PMC9023019 DOI: 10.1042/etls20210261] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Revised: 03/17/2022] [Accepted: 03/22/2022] [Indexed: 12/15/2022]
Abstract
Current environmental monitoring efforts often focus on known, regulated contaminants ignoring the potential effects of unmeasured compounds and/or environmental factors. These specific, targeted approaches lack broader environmental information and understanding, hindering effective environmental management and policy. Switching to comprehensive, untargeted monitoring of contaminants, organism health, and environmental factors, such as nutrients, temperature, and pH, would provide more effective monitoring with a likely concomitant increase in environmental health. However, even this method would not capture subtle biochemical changes in organisms induced by chronic toxicant exposure. Ecosurveillance is the systematic collection, analysis, and interpretation of ecosystem health-related data that can address this knowledge gap and provide much-needed additional lines of evidence to environmental monitoring programs. Its use would therefore be of great benefit to environmental management and assessment. Unfortunately, the science of ‘ecosurveillance’, especially omics-based ecosurveillance is not well known. Here, we give an overview of this emerging area and show how it has been beneficially applied in a range of systems. We anticipate this review to be a starting point for further efforts to improve environmental monitoring via the integration of comprehensive chemical assessments and molecular biology-based approaches. Bringing multiple levels of omics technology-based assessment together into a systems-wide ecosurveillance approach will bring a greater understanding of the environment, particularly the microbial communities upon which we ultimately rely to remediate perturbed ecosystems.
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Communities of culturable yeasts and yeast-like fungi in oligotrophic hypersaline coastal waters of the Arabian Gulf surrounding Qatar. Antonie van Leeuwenhoek 2022; 115:609-633. [PMID: 35322327 DOI: 10.1007/s10482-022-01722-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Accepted: 02/19/2022] [Indexed: 10/18/2022]
Abstract
This report is the first investigation of yeast biodiversity from the oligotrophic hypersaline coastal waters of the Arabian Gulf surrounding Qatar. Yeasts and yeast-like fungi, were cultured from seawater sampled at 13 coastal areas surrounding Qatar over a period of 2 years (December 2013-September 2015). Eight hundred and forty-two isolates belonging to 82 species representing two phyla viz., Ascomycota (23 genera) and Basidiomycota (16 genera) were identified by molecular sequencing. The results indicated that the coastal waters of the Qatari oligotrophic marine environment harbor a diverse pool of yeast species, most of which have been reported from terrestrial, clinical and aquatic sources in various parts of the world. Five species, i.e., Candida albicans, C. parapsilosis, C. tropicalis, Pichia kudriavzevii and Meyerozyma guilliermondii (n = 252/842; 30% isolates) are known as major opportunistic human pathogens. Fifteen species belonging to nine genera (n = 498/842; 59%) and 12 species belonging to seven genera (n = 459/842; 55%) are hydrocarbon degrading yeast and pollution indicator yeast species, respectively. Ascomycetous yeasts were predominant (66.38%; 559/842) as compared to their basidiomycetous counterparts (33.6%; 283/842). The most isolated yeast genera were Candida (28%; 236/842) (e.g., C. aaseri, C. boidinii, C. glabrata, C. intermedia, C. oleophila, C. orthopsilosis, C. palmioleophila, C. parapsilosis, C. pseudointermedia, C. rugopelliculosa, C. sake, C. tropicalis and C. zeylanoides), Rhodotorula (12.7%; 107/842), Naganishia (8.4%; 71/842), Aureobasidium (7.4%; 62/842), Pichia (7.3%; 62/842), and Debaryomyces (6.4%; 54/842). A total of eleven yeast species ( n = 38) isolated in this study are reported for the first time from the marine environment. Chemical testing demonstrated that seven out of the 13 sites had levels of total petroleum hydrocarbons (TPH) ranging from 200 to 900 µg/L, whereas 6 sites showed higher TPH levels (> 1000-21000 µg/L). The results suggest that the yeast community structure and density are impacted by various physico-chemical factors, namely total organic carbon, dissolved organic carbon and sulphur.
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Pandey N, Ojha U. Bio‐based polydimethylsiloxane porous sponge materials with programmable hydrophobicity and porosity for efficient separation of hydrophobic liquids from water. J Appl Polym Sci 2022. [DOI: 10.1002/app.51823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Niharika Pandey
- Department of Chemistry Rajiv Gandhi Institute of Petroleum Technology Jais India
| | - Umaprasana Ojha
- Department of Chemistry Rajiv Gandhi Institute of Petroleum Technology Jais India
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Gomes A, Christensen JH, Gründger F, Kjeldsen KU, Rysgaard S, Vergeynst L. Biodegradation of water-accommodated aromatic oil compounds in Arctic seawater at 0 °C. CHEMOSPHERE 2022; 286:131751. [PMID: 34399257 DOI: 10.1016/j.chemosphere.2021.131751] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 06/28/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Oil spills in Arctic marine environments are expected to increase concurrently with the expansion of shipping routes and petroleum exploitation into previously inaccessible ice-dominated regions. Most research on oil biodegradation focusses on the bulk oil, but the fate of the water-accommodated fraction (WAF), mainly composed of toxic aromatic compounds, is largely underexplored. To evaluate the bacterial degradation capacity of such dissolved aromatics in Greenlandic seawater, microcosms consisting of 0 °C seawater polluted with WAF were investigated over a 3-month period. With a half-life (t1/2) of 26 days, m-xylene was the fastest degraded compound, as measured by gas chromatography - mass spectrometry. Substantial slower degradation was observed for ethylbenzene, naphthalenes, phenanthrene, acenaphthylene, acenaphthene and fluorenes with t1/2 of 40-105 days. Colwellia, identified by 16S rRNA gene sequencing, was the main potential degrader of m-xylene. This genus occupied up to 47 % of the bacterial community until day 10 in the microcosms. Cycloclasticus and Zhongshania aliphaticivorans, potentially utilizing one-to three-ringed aromatics, replaced Colwellia between day 10 and 96 and occupied up to 6 % and 23 % of the community, respectively. Although most of the WAF can ultimately be eliminated in microcosms, our results suggest that the restoration of an oil-impacted Arctic environment may be slow as most analysed compounds had t1/2 of over 2-3 months and the detrimental effects of a spill towards the marine ecosystem likely persist during this time.
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Affiliation(s)
- Ana Gomes
- Arctic Research Centre, Department of Biology, Aarhus University, Aarhus, Denmark; Department of Biology, University of Aveiro, Aveiro, Portugal
| | - Jan H Christensen
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, Copenhagen, Denmark
| | - Friederike Gründger
- Arctic Research Centre, Department of Biology, Aarhus University, Aarhus, Denmark
| | - Kasper Urup Kjeldsen
- Section for Microbiology, Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Søren Rysgaard
- Arctic Research Centre, Department of Biology, Aarhus University, Aarhus, Denmark; Centre for Earth Observation Science, CHR Faculty of Environment Earth and Resources, University of Manitoba, Winnipeg, Manitoba, Canada
| | - Leendert Vergeynst
- Arctic Research Centre, Department of Biology, Aarhus University, Aarhus, Denmark; Aarhus University Centre for Water Technology (WATEC), Department of Biological and Chemical Engineering, Aarhus University, Aarhus, Denmark.
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Cabral L, Giovanella P, Pellizzer EP, Teramoto EH, Kiang CH, Sette LD. Microbial communities in petroleum-contaminated sites: Structure and metabolisms. CHEMOSPHERE 2022; 286:131752. [PMID: 34426136 DOI: 10.1016/j.chemosphere.2021.131752] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 06/24/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Over recent decades, hydrocarbon concentrations have been augmented in soil and water, mainly derived from accidents or operations that input crude oil and petroleum into the environment. Different techniques for remediation have been proposed and used to mitigate oil contamination. Among the available environmental recovery approaches, bioremediation stands out since these hydrocarbon compounds can be used as growth substrates for microorganisms. In turn, microorganisms can play an important role with significant contributions to the stabilization of impacted areas. In this review, we present the current knowledge about responses from natural microbial communities (using DNA barcoding, multiomics, and functional gene markers) and bioremediation experiments (microcosm and mesocosm) conducted in the presence of petroleum and chemical dispersants in different samples, including soil, sediment, and water. Additionally, we present metabolic mechanisms for aerobic/anaerobic hydrocarbon degradation and alternative pathways, as well as a summary of studies showing functional genes and other mechanisms involved in petroleum biodegradation processes.
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Affiliation(s)
- Lucélia Cabral
- Laboratório de Micologia Ambiental e Industrial (LAMAI), Departamento de Biologia Geral e Aplicada, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil
| | - Patricia Giovanella
- Laboratório de Micologia Ambiental e Industrial (LAMAI), Departamento de Biologia Geral e Aplicada, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil; Centro de Estudos Ambientais (CEA), Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil
| | - Elisa Pais Pellizzer
- Laboratório de Micologia Ambiental e Industrial (LAMAI), Departamento de Biologia Geral e Aplicada, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil
| | - Elias Hideo Teramoto
- Centro de Estudos Ambientais (CEA), Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil; Laboratório de Estudos de Bacias (LEBAC), Departamento de Geologia Aplicada, Instituto de Geociências e Ciências Exatas, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil
| | - Chang Hung Kiang
- Centro de Estudos Ambientais (CEA), Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil; Laboratório de Estudos de Bacias (LEBAC), Departamento de Geologia Aplicada, Instituto de Geociências e Ciências Exatas, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil
| | - Lara Durães Sette
- Laboratório de Micologia Ambiental e Industrial (LAMAI), Departamento de Biologia Geral e Aplicada, Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil; Centro de Estudos Ambientais (CEA), Instituto de Biociências, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Rio Claro, SP, Brazil.
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Semanti P, Robin RS, Purvaja R, Ramesh R. Fatty acid signatures of sediment microbial community in the chronically polluted mangrove ecosystem. MARINE POLLUTION BULLETIN 2021; 172:112885. [PMID: 34461371 DOI: 10.1016/j.marpolbul.2021.112885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 08/14/2021] [Accepted: 08/17/2021] [Indexed: 06/13/2023]
Abstract
Phospholipid fatty acid (PLFA) analysis was used to examine variation in the distribution of microbial communities in heavily polluted mangrove sediments of Thane creek, west coast of India. A total of 40 individual PLFAs representing 11 functional groups were identified in the sediment and were mainly dominated by saturated fatty acids (anaerobic prokaryotes) >50%. Significant dominance of PUFA, 16:3 ω6c (34.2%) indicators of micro-eukaryotes, in subsurface depth (p < 0.05) suggests input from the remnants of marine microalgae. Declined mean relative abundance of fungi (<6%) and actinomycetes (<1%) were detected in the sediment indicating their sensitivity to anthropic stressors. Homogenous profile of microbial diversity indicating active bioturbation. Cumulative metabolic stress evident from SAT/MUFA (>1), B/F (>1) and G+/G- (<1) ratio and prolonged hypoxia to be prevalent in the creek during the study. In conclusion, PLFA signatures can thus be used as potential biomarkers of environmental monitoring and proxy for interpreting ecosystem health.
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Affiliation(s)
- P Semanti
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - R S Robin
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - R Purvaja
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India
| | - R Ramesh
- National Centre for Sustainable Coastal Management, Ministry of Environment, Forest and Climate Change, Chennai 600 025, India.
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Balasubramanian VK, Joseph Maran MI, Ramteke D, Vijaykumar DS, Kottarathail Rajendran A, Ramachandran P, Ramachandran R. Environmental DNA reveals aquatic biodiversity of an urban backwater area, southeast coast of India. MARINE POLLUTION BULLETIN 2021; 171:112786. [PMID: 34371435 DOI: 10.1016/j.marpolbul.2021.112786] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 07/07/2021] [Accepted: 07/25/2021] [Indexed: 06/13/2023]
Abstract
Strong conservation management needs comprehensive data on biodiversity. Rapid methods that document aquatic biodiversity or assess the health condition of an ecosystem remain scarce. Herein, we have performed a metagenomics study on environmental DNA (eDNA) collected from an urban backwater area - Muttukadu, located in the southeast coast of India. Shotgun metagenomics approach using Illumina®NextSeq500 sequencing yielded 88.4 million raw reads. The processed data was assigned as 80% prokaryotes, 0.4% eukaryotes, ~2% viruses, and ~17% remain unknown. This approach has the potential to identify small micro-eukaryote, unseen species from both estuarine and marine environments. We have identified 156 eukaryote organisms represented from 21 phyla and 112 families, including those that are of conservational significance and ecological importance. Furthermore, our data also demonstrated the presence of pathogenic microorganisms due to sewage mixing with the backwaters. Given its sensitivity, we suggest this approach for an initial assessment of biodiversity structure in an ecosystem for the biomonitoring program.
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Affiliation(s)
- Vignesh Kumar Balasubramanian
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
| | - Midhuna Immaculate Joseph Maran
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
| | - Darwin Ramteke
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
| | - Deepak Samuel Vijaykumar
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India.
| | - Abhilash Kottarathail Rajendran
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
| | - Purvaja Ramachandran
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
| | - Ramesh Ramachandran
- Conservation of Coastal and Marine Resources Division (CMR), National Centre for Sustainable Coastal Management (NCSCM), India
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Hazaimeh MD, Ahmed ES. Bioremediation perspectives and progress in petroleum pollution in the marine environment: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:54238-54259. [PMID: 34387817 DOI: 10.1007/s11356-021-15598-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
Abstract
The marine environment is often affected by petroleum hydrocarbon pollution due to industrial activities and petroleum accidents. This pollution has recalcitrant and persistent compounds that pose a high risk to the ecological system and human health. For this reason, the world claims to seek to clean up these pollutants. Bioremediation is an attractive approach for removing petroleum pollution. It is considered a low-cost and highly effective approach with fewer side effects compared to chemical and physical techniques. This depends on the metabolic capability of microorganisms involved in the degradation of hydrocarbons through enzymatic reactions. Bioremediation activities mostly depend on environmental conditions such as temperature, pH, salinity, pressure, and nutrition availability. Understanding the effects of environmental conditions on microbial hydrocarbon degraders and microbial interactions with hydrocarbon compounds could be assessed for the successful degradation of petroleum pollution. The current review provides a critical view of petroleum pollution in seawater, the bioavailability of petroleum compounds, the contribution of microorganisms in petroleum degradation, and the mechanisms of degradation under aerobic and anaerobic conditions. We consider different biodegradation approaches such as biostimulation, bioaugmentation, and phytoremediation.
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Affiliation(s)
- Mohammad Daher Hazaimeh
- Department of Biology, College of Science in Zulfi, Majmaah University, Majmaah-11952, Saudi Arabia.
| | - Enas S Ahmed
- Department of Biology, College of Science in Zulfi, Majmaah University, Majmaah-11952, Saudi Arabia
- Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
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The effect of benzo[a]pyrene on the gut microbiota of Nile tilapia (Oreochromis niloticus). Appl Microbiol Biotechnol 2021; 105:7935-7947. [PMID: 34542683 DOI: 10.1007/s00253-021-11592-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 09/06/2021] [Accepted: 09/11/2021] [Indexed: 02/07/2023]
Abstract
Benzo[a]pyrene (BaP) is a highly toxic and carcinogenic polycyclic aromatic hydrocarbon (PAH) whose toxicological effects in the gut microbiota of aquatic organisms have not yet been fully revealed. Therefore, in this study, we used high-throughput 16S rRNA gene sequencing to evaluate the effects of BaP in the gut microbiome of Oreochromis niloticus, including its possible participation in the process of detoxification and its ability to recover. The fish were injected with a single intraperitoneal dose of 20 mg kg-1 of BaP, and the effects in the microbiome were evaluated at 24, 72, and 120 h post-injection. The results indicate a clear dysbiosis (in composition, relative abundance, diversity, and interaction networks) of the gut microbiota during 24 h post-injection, dominated by Fusobacteria and Bacteroidetes and a decrease in Proteobacteria and Spirochaetae. Interestingly, a slight recovery of the microbiome begins at 72 h and stabilises at 120 h post-injection. Pathway analysis revealed the participation of the gut microbiome in PAH degradation mainly at 24 h post-injection. This study provides new insights in the toxicology of BaP in O. niloticus and the first evidence of the ability of the gut microbiome to recovery after a chemical disturbance. KEY POINTS: • Benzo[a]pyrene caused a dysbiosis in the gut microbiota of Oreochromis niloticus. • We observed an enrichment of bacteria involved in the metabolism of xenobiotics. • The gut microbiota was recovered after exposure to benzo[a]pyrene.
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Pal S, Dutta A, Sarkar J, Roy A, Sar P, Kazy SK. Exploring the diversity and hydrocarbon bioremediation potential of microbial community in the waste sludge of Duliajan oil field, Assam, India. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:50074-50093. [PMID: 33945094 DOI: 10.1007/s11356-021-13744-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Accepted: 03/26/2021] [Indexed: 06/12/2023]
Abstract
Microbial community analysis of crude oil containing sludge collected from Duliajan oil field, Assam, India, showed the predominance of hydrocarbon-degrading bacteria such as Pseudomonas (20.1%), Pseudoxanthomonas (15.8%), Brevundimonas (1.6%), and Bacillus (0.8%) alongwith anaerobic, fermentative, nitrogen-fixing, nitrate-, sulfate-, and metal-reducing, syntrophic bacteria, and methanogenic archaea. Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis indicated gene collection for potential hydrocarbon degradation, lipid, nitrogen, sulfur, and methane metabolism. The culturable microbial community was predominated by Pseudomonas and Bacillus with the metabolic potential for utilizing diverse hydrocarbons, crude oil, and actual petroleum sludge as sole carbon source during growth and tolerating various environmental stresses prevailing in such contaminated sites. More than 90% of the isolated strains could produce biosurfactant and exhibit catechol 2,3-dioxygenase activity. Nearly 30% of the isolates showed alkane hydroxylase activity with the maximum specific activity of 0.54 μmol min-1 mg-1. The study provided better insights into the microbial diversity and functional potential within the crude oil containing sludge which could be exploited for in situ bioremediation of contaminated sites.
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Affiliation(s)
- Siddhartha Pal
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, WB, 713209, India
| | - Avishek Dutta
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, WB, 721302, India
- School of Bio Science, Indian Institute of Technology Kharagpur, Kharagpur, WB, 721302, India
| | - Jayeeta Sarkar
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, WB, 721302, India
| | - Ajoy Roy
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, WB, 713209, India
| | - Pinaki Sar
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, WB, 721302, India
| | - Sufia K Kazy
- Department of Biotechnology, National Institute of Technology Durgapur, Durgapur, WB, 713209, India.
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Silva-Castro GA, Rodríguez-Calvo A, Robledo-Mahón T, Aranda E, González-López J, Calvo C. Design of Bio-Absorbent Systems for the Removal of Hydrocarbons from Industrial Wastewater: Pilot-Plant Scale. TOXICS 2021; 9:toxics9070162. [PMID: 34357905 PMCID: PMC8309889 DOI: 10.3390/toxics9070162] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 07/03/2021] [Accepted: 07/05/2021] [Indexed: 11/23/2022]
Abstract
The objective of this study was the development and design of a treatment system at a pilot-plant scale for the remediation of hydrocarbons in industrial wastewater. The treatment consists of a combined approach of absorption and biodegradation to obtain treated water with sufficient quality to be reused in fire defense systems (FDSs). The plant consists of four vertical flow columns (bioreactors) made of stainless steel (ATEX Standard) with dimensions of 1.65 × 0.5 m and water volumes of 192.4 L. Each bioreactor includes a holder to contain the absorbent material (Pad Sentec polypropylene). The effectiveness of the treatment system has been studied in wastewater with high and low pollutant loads (concentrations higher than 60,000 mg L−1 of total petroleum hydrocarbons (TPH) and lower than 500 mg L−1 of TPHs, respectively). The pilot-plant design can function at two different flow rates, Q1 (180 L h−1) and Q2 (780 L h−1), with or without additional aeration. The results obtained for strongly polluted wastewaters showed that, at low flow rates, additional aeration enhanced hydrocarbon removal, while aeration was unnecessary at high flow rates. For wastewater with a low pollutant load, we selected a flow rate of 780 L h−1 without aeration. Different recirculation times were also tested along with the application of a post-treatment lasting 7 days inside the bioreactor without recirculation. The microbial diversity studies showed similar populations of bacteria and fungi in the inlet and outlet wastewater. Likewise, high similarity indices were observed between the adhered and suspended biomass within the bioreactors. The results showed that the setup and optimization of the reactor represent a step forward in the application of bioremediation processes at an industrial/large scale.
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Affiliation(s)
- Gloria Andrea Silva-Castro
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
| | - Alfonso Rodríguez-Calvo
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
| | - Tatiana Robledo-Mahón
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
- Department of Microbiology, Pharmacy Faculty, Campus de Cartuja s/n, University of Granada, 18071 Granada, Spain
| | - Elisabet Aranda
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
- Department of Microbiology, Pharmacy Faculty, Campus de Cartuja s/n, University of Granada, 18071 Granada, Spain
| | - Jesús González-López
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
- Department of Microbiology, Pharmacy Faculty, Campus de Cartuja s/n, University of Granada, 18071 Granada, Spain
| | - Concepción Calvo
- Institute of Water Research, University of Granada, 18071 Granada, Spain; (G.A.S.-C.); (A.R.-C.); (T.R.-M.); (E.A.); (J.G.-L.)
- Department of Microbiology, Pharmacy Faculty, Campus de Cartuja s/n, University of Granada, 18071 Granada, Spain
- Correspondence: ; Tel.: +34-958-248021
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Martinez-Varela A, Cerro-Gálvez E, Auladell A, Sharma S, Moran MA, Kiene RP, Piña B, Dachs J, Vila-Costa M. Bacterial responses to background organic pollutants in the northeast subarctic Pacific Ocean. Environ Microbiol 2021; 23:4532-4546. [PMID: 34169620 DOI: 10.1111/1462-2920.15646] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 06/16/2021] [Indexed: 12/13/2022]
Abstract
Thousands of man-made synthetic chemicals are released to oceans and compose the anthropogenic dissolved organic carbon (ADOC). Little is known about the effects of this chronic pollution on marine microbiome activities. In this study, we measured the pollution level at three sites in the Northeast Subarctic Pacific Ocean (NESAP) and investigated how mixtures of three model families of ADOC at different environmentally relevant concentrations affected naturally occurring marine bacterioplankton communities' structure and metabolic functioning. The offshore northernmost site (North) had the lowest concentrations of hydrocarbons, as well as organophosphate ester plasticizers, contrasting with the two other continental shelf sites, the southern coastal site (South) being the most contaminated. At North, ADOC stimulated bacterial growth and promoted an increase in the contribution of some Gammaproteobacteria groups (e.g. Alteromonadales) to the 16 rRNA pool. These groups are described as fast responders after oil spills. In contrast, minor changes in South microbiome activities were observed. Gene expression profiles at Central showed the coexistence of ADOC degradation and stress-response strategies to cope with ADOC toxicities. These results show that marine microbial communities at three distinct domains in NESAP are influenced by background concentrations of ADOC, expanding previous assessments for polar and temperate waters.
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Affiliation(s)
- Alícia Martinez-Varela
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research, IDAEA-CSIC, Barcelona, Catalunya, Spain
| | - Elena Cerro-Gálvez
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research, IDAEA-CSIC, Barcelona, Catalunya, Spain
| | - Adrià Auladell
- Department of Marine Biology and Oceanography, Marine Science Institute, ICM-CSIC, Barcelona, Catalunya, Spain
| | - Shalabh Sharma
- Department of Marine Sciences, University of Georgia, Marine Sciences Building, Athens, GA, USA
| | - Mary Ann Moran
- Department of Marine Sciences, University of Georgia, Marine Sciences Building, Athens, GA, USA
| | - Ronald P Kiene
- Department of Marine Sciences, University of South Alabama, Mobile, AL, USA
| | - Benjamí Piña
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research, IDAEA-CSIC, Barcelona, Catalunya, Spain
| | - Jordi Dachs
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research, IDAEA-CSIC, Barcelona, Catalunya, Spain
| | - Maria Vila-Costa
- Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research, IDAEA-CSIC, Barcelona, Catalunya, Spain
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36
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Silva RA, Di Giulio RT, Rice CD. The In Vitro Proinflammatory Properties of Water Accommodated Sediment Extracts from a Creosote-Contaminated US Environmental Protection Agency Superfund Site. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2021; 40:1576-1585. [PMID: 33512033 PMCID: PMC10115128 DOI: 10.1002/etc.5001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 01/20/2021] [Accepted: 01/26/2021] [Indexed: 06/12/2023]
Abstract
The southern branch of the Elizabeth River near Portsmouth, Virginia, USA, is one of the most creosote-polluted subestuaries in North America and the former location of the Atlantic Wood US Environmental Protection Agency Superfund site. We previously demonstrated that adult Atlantic Wood killifish collected in situ had severe hepatic lesions, including hepatoblastoma and hepatocellular carcinoma, as well as suppressed circulating antibody responses compared to a historical reference site. Moreover, several innate immune functions were higher in Atlantic Wood fish, including elevated expression of hepatic cyclooxygenase-2 (COX-2), suggesting a proinflammatory environment. To further examine the potential of Atlantic Wood contaminants to modulate innate immune function(s), the present study used RAW264.7 mouse macrophages as an in vitro model to develop new approach methodologies for rapid screening. Lipopolysaccharide (LPS)-stimulated nitric oxide secretion by macrophages is a rapid, sensitive, and predictive in vitro system for screening potentially immunotoxic contaminants as single compounds or as complex mixtures. Compared to the reference site, filter-sterilized Atlantic Wood sediment extracts (water accommodated fractions) induced nitric oxide and IL-6 secretion as well as inducible nitric oxide synthase and COX-2 proteins at levels comparable to or higher than those induced by LPS treatments alone. Extracts also increased phagocytic activity by macrophages. Using a limulus lysate assay, we show that bacterial endotoxin levels in Atlantic Wood extracts are higher than in reference extracts and that polymyxin-B chelation ameliorates proinflammatory effects. These findings illuminate the reality of sediment constituents other than toxic compounds previously associated with developmental abnormalities and carcinogenesis in killifish from the Atlantic Wood site. Perhaps these data also suggest the presence of contaminant-adapted consortia of sediment microbes at many heavily polluted sites worldwide compared to less contaminated sites. Environ Toxicol Chem 2021;40:1576-1585. © 2021 SETAC.
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Affiliation(s)
- Rayna A. Silva
- Department of Biological Sciences, Graduate Program in Environmental Toxicology, Clemson University, Clemson SC USA
| | | | - Charles D. Rice
- Department of Biological Sciences, Graduate Program in Environmental Toxicology, Clemson University, Clemson SC USA
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Hoang AT, Nguyen XP, Duong XQ, Huynh TT. Sorbent-based devices for the removal of spilled oil from water: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:28876-28910. [PMID: 33846913 DOI: 10.1007/s11356-021-13775-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 03/29/2021] [Indexed: 06/12/2023]
Abstract
Always, oil spills do cause serious and dire consequences for the environment, nature, and society that it consumes much time and socio-economic resources to overcome such consequences. Oil spills, hence, posed a big challenge in searching the advanced technologies and devices to recover spilled oil rapidly and efficiently. Indeed, sorbents have been found to play an extremely critical role in the spilled-oil remediation processes. Recently, a large number of various advanced sorbents and sorbent-based oil-collecting devices/technologies have been developed to enhance the oil-recovery capacity. Therefore, it is necessary to have a comprehensive assessment of the application of sorbent-based oil-collecting devices/technologies in recovering spilled oil. Due to this reason, this paper aims to provide a comprehensive review of the advanced technologies of the combination of sorbents and oil-collecting devices in the oil cleanup strategies. Two main oil-collecting devices such as booms and skimmers that could conjunct with sorbents were critically evaluated on the basis of the applicability and technological features, indicating that the capacity of oil spill recovery could achieve 90%. Moreover, oil-storage and oil-collecting devices were also completely mentioned. Last but not least, technical directions, concerns over the application of sorbents in oil recovery, and existing challenges relating to storage, transport, and disposal of used sorbents were discussed in detail. In the future, the automatic process of spilled oil recovery with the conjunction between advanced devices and environmentally friendly high-efficiency sorbents should be further investigated to minimize the environmental impacts, reduce the cost, as well as maximize the collected oil spill.
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Affiliation(s)
- Anh Tuan Hoang
- Institute of Engineering, Ho Chi Minh City University of Technology (HUTECH), Ho Chi Minh City, Vietnam.
| | - Xuan Phuong Nguyen
- Institute of Maritime, Ho Chi Minh City University of Transport, Ho Chi Minh City, Vietnam.
| | - Xuan Quang Duong
- Institute of Mechanical Engineering, Vietnam Maritime University, Haiphong, Vietnam
| | - Thanh Tung Huynh
- Institute of Engineering, Ho Chi Minh City University of Technology (HUTECH), Ho Chi Minh City, Vietnam
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Ganesh Kumar A, Manisha D, Sujitha K, Magesh Peter D, Kirubagaran R, Dharani G. Genome sequence analysis of deep sea Aspergillus sydowii BOBA1 and effect of high pressure on biodegradation of spent engine oil. Sci Rep 2021; 11:9347. [PMID: 33931710 PMCID: PMC8087790 DOI: 10.1038/s41598-021-88525-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 03/30/2021] [Indexed: 02/02/2023] Open
Abstract
A deep-sea fungus Aspergillus sydowii BOBA1 isolated from marine sediment at a depth of 3000 m was capable of degrading spent engine (SE) oil. The response of immobilized fungi towards degradation at elevated pressure was studied in customized high pressure reactors without any deviation in simulating in situ deep-sea conditions. The growth rate of A. sydowii BOBA1 in 0.1 MPa was significantly different from the growth at 10 MPa pressure. The degradation percentage reached 71.2 and 82.5% at atmospheric and high pressure conditions, respectively, within a retention period of 21 days. The complete genome sequence of BOBA1 consists of 38,795,664 bp in size, comprises 2582 scaffolds with predicted total coding genes of 18,932. A total of 16,247 genes were assigned with known functions and many families found to have a potential role in PAHs and xenobiotic compound metabolism. Functional genes controlling the pathways of hydrocarbon and xenobiotics compound degrading enzymes such as dioxygenase, decarboxylase, hydrolase, reductase and peroxidase were identified. The spectroscopic and genomic analysis revealed the presence of combined catechol, gentisate and phthalic acid degradation pathway. These results of degradation and genomic studies evidenced that this deep-sea fungus could be employed to develop an eco-friendly mycoremediation technology to combat the oil polluted marine environment. This study expands our knowledge on piezophilic fungi and offer insight into possibilities about the fate of SE oil in deep-sea.
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Affiliation(s)
- A. Ganesh Kumar
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
| | - D. Manisha
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
| | - K. Sujitha
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
| | - D. Magesh Peter
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
| | - R. Kirubagaran
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
| | - G. Dharani
- grid.454780.a0000 0001 0683 2228Marine Biotechnology Division, National Institute of Ocean Technology, Ministry of Earth Sciences (MoES), Government of India, Chennai, 600100 Tamil Nadu India
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Bôto ML, Magalhães C, Perdigão R, Alexandrino DAM, Fernandes JP, Bernabeu AM, Ramos S, Carvalho MF, Semedo M, LaRoche J, Almeida CMR, Mucha AP. Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast. Front Microbiol 2021; 12:633659. [PMID: 33967978 PMCID: PMC8102992 DOI: 10.3389/fmicb.2021.633659] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 03/26/2021] [Indexed: 01/04/2023] Open
Abstract
Oil spills are among the most catastrophic events to marine ecosystems and current remediation techniques are not suitable for ecological restoration. Bioremediation approaches can take advantage of the activity of microorganisms with biodegradation capacity thus helping to accelerate the recovery of contaminated environments. The use of native microorganisms can increase the bioremediation efficiency since they have higher potential to survive in the natural environment while preventing unpredictable ecological impacts associated with the introduction of non-native organisms. In order to know the geographical scale to which a native bioremediation consortium can be applied, we need to understand the spatial heterogeneity of the natural microbial communities with potential for hydrocarbon degradation. In the present study, we aim to describe the genetic diversity and the potential of native microbial communities to degrade petroleum hydrocarbons, at an early stage of bioremediation, along the NW Iberian Peninsula coast, an area particularly susceptible to oil spills. Seawater samples collected in 47 sites were exposed to crude oil for 2 weeks, in enrichment experiments. Seawater samples collected in situ, and samples collected after the enrichment with crude oil, were characterized for prokaryotic communities by using 16S rRNA gene amplicon sequencing and predictive functional profiling. Results showed a drastic decrease in richness and diversity of microbial communities after the enrichment with crude oil. Enriched microbial communities were mainly dominated by genera known to degrade hydrocarbons, namely Alcanivorax, Pseudomonas, Acinetobacter, Rhodococcus, Flavobacterium, Oleibacter, Marinobacter, and Thalassospira, without significant differences between geographic areas and locations. Predictive functional profiling of the enriched microbial consortia showed a high potential to degrade the aromatic compounds aminobenzoate, benzoate, chlorocyclohexane, chlorobenzene, ethylbenzene, naphthalene, polycyclic aromatic compounds, styrene, toluene, and xylene. Only a few genera contributed for more than 50% of this genetic potential for aromatic compounds degradation in the enriched communities, namely Alcanivorax, Thalassospira, and Pseudomonas spp. This work is a starting point for the future development of prototype consortia of hydrocarbon-degrading bacteria to mitigate oil spills in the Iberian NW coast.
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Affiliation(s)
- Maria L Bôto
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Catarina Magalhães
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Faculty of Sciences (FCUP), University of Porto, Porto, Portugal.,Ocean Frontier Institute, Dalhousie University, Halifax, NS, Canada
| | - Rafaela Perdigão
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Diogo A M Alexandrino
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Joana P Fernandes
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Ana M Bernabeu
- Marine and Environmental Geology (GEOMA) Group, Department of Marine Geosciences, University of Vigo, Vigo, Spain
| | - Sandra Ramos
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal
| | - Maria F Carvalho
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Institute of Biomedical Sciences Abel Salazar (ICBAS), University of Porto, Porto, Portugal
| | - Miguel Semedo
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal
| | - Julie LaRoche
- Department of Biology, Dalhousie University, Halifax, NS, Canada
| | - C Marisa R Almeida
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Faculty of Sciences (FCUP), University of Porto, Porto, Portugal
| | - Ana P Mucha
- Bioremediation and Ecosystems Functioning (EcoBioTec), CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.,Faculty of Sciences (FCUP), University of Porto, Porto, Portugal
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Yu J, Zhou D, Yu M, Yang J, Li Y, Guan B, Wang X, Zhan C, Wang Z, Qu F. Environmental threats induced heavy ecological burdens on the coastal zone of the Bohai Sea, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 765:142694. [PMID: 33071117 DOI: 10.1016/j.scitotenv.2020.142694] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 09/25/2020] [Accepted: 09/27/2020] [Indexed: 06/11/2023]
Abstract
The environment of the Bohai Sea is under enormous pressure because of rapid economic and urban development associated with increased population inhabiting the coastal zone. Environmental threats to the coastal ecosystem were analyzed using 2006-2017 statistical/monitoring data from the State Oceanic Administration, China. The results showed that harmful algal blooms occurred a total of 104 times during the period of 2006-2017, for a cumulative area of more than 21,275 km2. The main environmental threats came from offshore oil and gas production in the form of hydrocarbon pollution during extraction, as well as from urban wastewater and sewage. Oil pollution, mainly generated from spills, offshore oil platforms and large number of vessels/ports, was found to cause very severe negative impacts on the environment. Another threat is from excessive groundwater exploitation which has resulted in seawater intrusion and soil salinization occurrence in more than 90% of coastal areas around the Bohai Sea. The maximum distance of intrusion by seawater and soil salinization was more than 40 and 32 km inland, respectively. Contamination by terrestrial pollutants was identified as another threat affecting the environment quality of the Bohai Sea. Approximately 840,000 t of pollutants were carried into the sea by major rivers annually for 2010-2017. The standard discharge rate of terrestrial-source sewage outlets did not exceed 50%; however, only 13.12% of sea areas adjacent to sewage outlets (rivers) met the environmental quality requirements for functional marine areas. The results also showed the frequency of storm surges in the Bohai Sea which was 8.83 times per year and the resulting annual direct economic losses reached (RMB) 1.77 billion for 2006-2017. The results highlight the urgent need to implement an ecological management strategy to reduce the heavy ecological burdens in the coastal zone of the Bohai Sea.
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Affiliation(s)
- Junbao Yu
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China.
| | - Di Zhou
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Miao Yu
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Jisong Yang
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China.
| | - Yunzhao Li
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Bo Guan
- Key Laboratory of Coastal Environment Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China
| | - Xuehong Wang
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Chao Zhan
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Zhikang Wang
- Key Laboratory of Ecological Restoration and Conservation of Coastal Wetlands in Universities of Shandong, The Institute for Advanced Study of Coastal Ecology, Ludong University, Yantai 264025, PR China
| | - Fanzhu Qu
- Shandong Provincial Key Laboratory of Eco-environmental Science for Yellow River Delta, Binzhou University, Binzhou 256601, PR China
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Hamdan HZ, Salam DA. Ferric iron stimulation in marine SMFCs: Impact on the microbial structure evolution in contaminated sediments with low and high molecular weight PAHs. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 280:111636. [PMID: 33218829 DOI: 10.1016/j.jenvman.2020.111636] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2020] [Revised: 10/10/2020] [Accepted: 11/03/2020] [Indexed: 06/11/2023]
Abstract
The impact of ferric iron stimulation on the evolution of microbial structure in marine sediment microbial fuel cells (SMFCs), operated for the bioremediation of a complex mixture of low and high molecular weight PAHs (naphthalene, fluorene, pyrene and benzo(a)pyrene), was assessed. Microbial evolution profiles showed high relative abundances of exoelectrogenic iron-reducing bacteria throughout the biodegradation, namely Geoalkalibacter, under ferric iron stimulation and anode reducing conditions, irrespective of sulfate reducing bacteria (SRB) inhibition. Highest PAHs removal was measured in the absence of anode reduction, under Fe stimulation and SRB inhibition, reaching 40.85% for benzo(a)pyrene, the most persistent PAH used in this study. Results suggest that amendment of contaminated sediment with ferric iron could constitute a better bioremediation strategy than using SMFCs. This becomes significant when considering the well-established and dominant indigenous SRB population in marine sediments that usually limits the performance of the anode as a terminal electron acceptor in marine SMFCs.
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Affiliation(s)
- Hamdan Z Hamdan
- Department of Civil and Environmental Engineering, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, Beirut, Lebanon.
| | - Darine A Salam
- Department of Civil and Environmental Engineering, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, Beirut, Lebanon.
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Verasoundarapandian G, Wong CY, Shaharuddin NA, Gomez-Fuentes C, Zulkharnain A, Ahmad SA. A Review and Bibliometric Analysis on Applications of Microbial Degradation of Hydrocarbon Contaminants in Arctic Marine Environment at Metagenomic and Enzymatic Levels. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:ijerph18041671. [PMID: 33572432 PMCID: PMC7916232 DOI: 10.3390/ijerph18041671] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 02/04/2021] [Accepted: 02/05/2021] [Indexed: 12/20/2022]
Abstract
The globe is presently reliant on natural resources, fossil fuels, and crude oil to support the world’s energy requirements. Human exploration for oil resources is always associated with irreversible effects. Primary sources of hydrocarbon pollution are instigated through oil exploration, extraction, and transportation in the Arctic region. To address the state of pollution, it is necessary to understand the mechanisms and processes of the bioremediation of hydrocarbons. The application of various microbial communities originated from the Arctic can provide a better interpretation on the mechanisms of specific microbes in the biodegradation process. The composition of oil and consequences of hydrocarbon pollutants to the various marine environments are also discussed in this paper. An overview of emerging trends on literature or research publications published in the last decade was compiled via bibliometric analysis in relation to the topic of interest, which is the microbial community present in the Arctic and Antarctic marine environments. This review also presents the hydrocarbon-degrading microbial community present in the Arctic, biodegradation metabolic pathways (enzymatic level), and capacity of microbial degradation from the perspective of metagenomics. The limitations are stated and recommendations are proposed for future research prospects on biodegradation of oil contaminants by microbial community at the low temperature regions of the Arctic.
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Affiliation(s)
| | - Chiew-Yen Wong
- School of Health Sciences, International Medical University, Kuala Lumpur 57000, Malaysia;
- National Antarctic Research Center, Universiti Malaya, Kuala Lumpur 50603, Malaysia
| | - Noor Azmi Shaharuddin
- Department of Biochemistry, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (G.V.); (N.A.S.)
| | - Claudio Gomez-Fuentes
- Department of Chemical Engineering, Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile;
- Center for Research and Antarctic Environmental Monitoring (CIMAA), Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile
| | - Azham Zulkharnain
- Department of Bioscience and Engineering, Shibaura Institute of Technology, Saitama-shi 337-8570, Saitama, Japan;
| | - Siti Aqlima Ahmad
- Department of Biochemistry, Universiti Putra Malaysia, Serdang 43400, Selangor, Malaysia; (G.V.); (N.A.S.)
- National Antarctic Research Center, Universiti Malaya, Kuala Lumpur 50603, Malaysia
- Center for Research and Antarctic Environmental Monitoring (CIMAA), Universidad de Magallanes, Avda. Bulnes 01855, Punta Arenas, Chile
- Correspondence:
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Zhai G, Qi L, He W, Dai J, Xu Y, Zheng Y, Huang J, Sun D. Durable super-hydrophobic PDMS@SiO 2@WS 2 sponge for efficient oil/water separation in complex marine environment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 269:116118. [PMID: 33280919 DOI: 10.1016/j.envpol.2020.116118] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2020] [Revised: 11/12/2020] [Accepted: 11/16/2020] [Indexed: 06/12/2023]
Abstract
The robust and eco-friendly super-hydrophobic sponge with remarkable performances has been potential adsorption material for the treatment of offshore oil spills. In this work, the durable PDMS@SiO2@WS2 sponge was fabricated via a green and facile one-step dipping method. The mixed tungsten disulfide (WS2) microparticles and hydrophobic SiO2 nanoparticles were immobilized on the sponge by non-toxic polydimethylsiloxane (PDMS) glue tier, which featured the hierarchical structure and extreme water repellency with the water contact angle of 158.8 ± 1.4°. The obtained PDMS@SiO2@WS2 sponge exhibits high oil adsorption capacity with 12-112 times of its own weight, and oil/water selectivity with separation efficiency over 99.85%. Notably, when subjected to the complex marine environment including high temperature, corrosive condition, insolation, and strong wind and waves, the modified sponge can maintain sable super-hydrophobicity with water contact angle over 150°. Moreover, it possesses superior mechanical stability for sustainable reusability and oil recovery. The sponge fabricated by non-toxic modifiers along with its sable super-hydrophobicity in complex marine environment makes it a potential material for practical applications.
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Affiliation(s)
- Guanzhong Zhai
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Lixue Qi
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Wang He
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Jiajun Dai
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Yan Xu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Yanmei Zheng
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Jiale Huang
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China
| | - Daohua Sun
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, PR China.
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Wang Y, Yan J, Wang J, Zhang X, Wei L, Du Y, Yu B, Ye S. Superhydrophobic metal organic framework doped polycarbonate porous monolith for efficient selective removal oil from water. CHEMOSPHERE 2020; 260:127583. [PMID: 32698115 DOI: 10.1016/j.chemosphere.2020.127583] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 06/28/2020] [Accepted: 06/29/2020] [Indexed: 06/11/2023]
Abstract
A series of superhydrophobic polycarbonate porous monoliths modified with metal organic framework (Z8/PC) were firstly fabricated through a facile thermally impacted non-solvent induced phase separation method for efficient selective oil/water separation. The performance of the monoliths on oil/water separation was evaluated in terms of selectivity, equilibrium adsorption capacity, corrosion resistance, kinetics, and circulation. The results showed that the use of ZIF-8 significantly compensated for the shortage of pure monolith. Compared with pure PC monolith, the hydrophobic angle of the Z8/PC-2 monolith promoted from 136.18° to 154.25° due to the micro-nano flower surface. Meanwhile, the Z8/PC-2 monolith displayed a more intricate and continuous interconnected 3D hierarchical micro-nano structure, which possessed the monolith a higher specific surface area of 146.84 m2 g-1 and porosity of 89.5%. What's more, more superior oil/water separation abilities of Z8/PC-2 monolith were manifested by the selective removal of oil or organic solvent from water within 30s, high equilibrium adsorption capacity, and excellent corrosion resistance. In addition, the ten-cycle regeneration of porous monoliths via centrifugation or evaporation displayed additional attractiveness. Therefore, porous Z8/PC monolith will be a promising candidate for the efficient selective oil/water separation of oil spills and organic solvents.
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Affiliation(s)
- Yanhua Wang
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; University of Chinese Academy of Sciences, No. 19(A) Yuquan Road, Beijing, 100049, China
| | - Jingmin Yan
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; University of Chinese Academy of Sciences, No. 19(A) Yuquan Road, Beijing, 100049, China
| | - Jianguang Wang
- Institute of Engineering Technology, University of Science and Technology Beijing, Beijing, 100083, China
| | - Xiaomeng Zhang
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; Innovation Academy for Green Manufacture, Chinese Academy of Sciences, Beijing, 100190, China.
| | - Lianqi Wei
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; Innovation Academy for Green Manufacture, Chinese Academy of Sciences, Beijing, 100190, China
| | - Yingchao Du
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; University of Chinese Academy of Sciences, No. 19(A) Yuquan Road, Beijing, 100049, China
| | - Bo Yu
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; University of Chinese Academy of Sciences, No. 19(A) Yuquan Road, Beijing, 100049, China
| | - Shufeng Ye
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, PO Box 353, Beijing, 100190, China; Innovation Academy for Green Manufacture, Chinese Academy of Sciences, Beijing, 100190, China.
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Chemical Profiling Provides Insights into the Metabolic Machinery of Hydrocarbon-Degrading Deep-Sea Microbes. mSystems 2020; 5:5/6/e00824-20. [PMID: 33172970 PMCID: PMC7657597 DOI: 10.1128/msystems.00824-20] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Marine microbes are known to degrade hydrocarbons; however, microbes inhabiting deep-sea sediments remain largely unexplored. Previous studies into the classical pathways of marine microbial metabolism reveal diverse chemistries; however, metabolic profiling of marine microbes cultured with hydrocarbons is limited. In this study, taxonomic (amplicon sequencing) profiles of two environmental deep-sea sediments (>1,200 m deep) were obtained, along with taxonomic and metabolomic (mass spectrometry-based metabolomics) profiles of microbes harbored in deep-sea sediments cultured with hydrocarbons as the sole energy source. Samples were collected from the Gulf of México (GM) and cultured for 28 days using simple (toluene, benzene, hexadecane, and naphthalene) and complex (petroleum API 40) hydrocarbon mixtures as the sole energy sources. The sediment samples harbored diverse microbial communities predominantly classified into Woeseiaceae and Kiloniellaceae families, whereas Pseudomonadaceae and Enterobacteriaceae families prevailed after sediments were cultured with hydrocarbons. Chemical profiling of microbial metabolomes revealed diverse chemical groups belonging primarily to the lipids and lipid-like molecules superclass, as well as the organoheterocyclic compound superclass (ClassyFire annotation). Metabolomic data and prediction of functional profiles indicated an increase in aromatic and alkane degradation in samples cultured with hydrocarbons. Previously unreported metabolites, identified as intermediates in the degradation of hydrocarbons, were annotated as hydroxylated polyunsaturated fatty acids and carboxylated benzene derivatives. In summary, this study used mass spectrometry-based metabolomics coupled to chemoinformatics to demonstrate how microbes from deep-sea sediments could be cultured in the presence of hydrocarbons. This study also highlights how this experimental approach can be used to increase the understanding of hydrocarbon degradation by deep-sea sediment microbes.IMPORTANCE High-throughput technologies and emerging informatics tools have significantly advanced knowledge of hydrocarbon metabolism by marine microbes. However, research into microbes inhabiting deep-sea sediments (>1,000 m) is limited compared to those found in shallow waters. In this study, a nontargeted and nonclassical approach was used to examine the diversity of bacterial taxa and the metabolic profiles of hydrocarbon-degrading deep-sea microbes. In conclusion, this study used metabolomics and chemoinformatics to demonstrate that microbes from deep-sea sediment origin thrive in the presence of toxic and difficult-to-metabolize hydrocarbons. Notably, this study provides evidence of previously unreported metabolites and the global chemical repertoire associated with the metabolism of hydrocarbons by deep-sea microbes.
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Mearns AJ, Morrison AM, Arthur C, Rutherford N, Bissell M, Rempel-Hester MA. Effects of pollution on marine organisms. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2020; 92:1510-1532. [PMID: 32671886 DOI: 10.1002/wer.1400] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 07/07/2020] [Accepted: 07/09/2020] [Indexed: 06/11/2023]
Abstract
This review covers selected 2019 articles on the biological effects of pollutants, including human physical disturbances, on marine and estuarine plants, animals, ecosystems, and habitats. The review, based largely on journal articles, covers field, and laboratory measurement activities (bioaccumulation of contaminants, field assessment surveys, toxicity testing, and biomarkers) as well as pollution issues of current interest including endocrine disrupters, emerging contaminants, wastewater discharges, marine debris, dredging, and disposal. Special emphasis is placed on effects of oil spills and marine debris due largely to the 2010 Deepwater Horizon oil blowout in the Gulf of Mexico and proliferation of data on the assimilation and effects of marine debris microparticulates. Several topical areas reviewed in the past (e.g., mass mortalities ocean acidification) were dropped this year. The focus of this review is on effects, not on pollutant sources, chemistry, fate, or transport. There is considerable overlap across subject areas (e.g., some bioaccumulation data may be appeared in other topical categories such as effects of wastewater discharges, or biomarker studies appearing in oil toxicity literature). Therefore, we strongly urge readers to use keyword searching of the text and references to locate related but distributed information. Although nearly 400 papers are cited, these now represent a fraction of the literature on these subjects. Use this review mainly as a starting point. And please consult the original papers before citing them.
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Affiliation(s)
- Alan J Mearns
- Emergency Response Division, National Oceanic and Atmospheric Administration (NOAA), Seattle, Washington
| | | | | | - Nicolle Rutherford
- Emergency Response Division, National Oceanic and Atmospheric Administration (NOAA), Seattle, Washington
| | - Matt Bissell
- Emergency Response Division, National Oceanic and Atmospheric Administration (NOAA), Seattle, Washington
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Hamdan HZ, Salam DA. Microbial community evolution during the aerobic biodegradation of petroleum hydrocarbons in marine sediment microcosms: Effect of biostimulation and seasonal variations. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 265:114858. [PMID: 32497947 DOI: 10.1016/j.envpol.2020.114858] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2019] [Revised: 05/16/2020] [Accepted: 05/21/2020] [Indexed: 06/11/2023]
Abstract
Evolution of the microbial community structure in crude oil contaminated marine sediments was assessed under aerobic biodegradation during wet (18 °C) and dry (28 °C) seasons experiments, to account for seasonal variations in nutrients and temperature, under biostimulation and natural attenuation conditions. NMDS showed significant variation in the microbial communities between the wet and the dry season experiments, and between the biostimulation and the natural attenuation treatments in the dry season microcosms. No significant variation in the microbial community and oil biodegradation was observed during the wet season experiments due to high background nitrogen levels eliminating the effect of biostimulation. Larger variations were observed in the dry season experiments and were correlated to enhanced alkanes removal in the biostimulated microcosms, where Alphaproteobacteria dominated the total microbial community by the end of biodegradation (54%). Many hydrocarbonoclastic bacterial genera showed successive dominance during the operation affecting the ultimate performance of the microcosms.
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Affiliation(s)
- Hamdan Z Hamdan
- Department of Civil and Environmental Engineering, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, Beirut, Lebanon
| | - Darine A Salam
- Department of Civil and Environmental Engineering, Maroun Semaan Faculty of Engineering and Architecture, American University of Beirut, Beirut, Lebanon.
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Hidalgo KJ, Sierra-Garcia IN, Dellagnezze BM, de Oliveira VM. Metagenomic Insights Into the Mechanisms for Biodegradation of Polycyclic Aromatic Hydrocarbons in the Oil Supply Chain. Front Microbiol 2020; 11:561506. [PMID: 33072021 PMCID: PMC7530279 DOI: 10.3389/fmicb.2020.561506] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 08/24/2020] [Indexed: 02/01/2023] Open
Abstract
Petroleum is a very complex and diverse organic mixture. Its composition depends on reservoir location and in situ conditions and changes once crude oil is spilled into the environment, making the characteristics associated with every spill unique. Polycyclic aromatic hydrocarbons (PAHs) are common components of the crude oil and constitute a group of persistent organic pollutants. Due to their highly hydrophobic, and their low solubility tend to accumulate in soil and sediment. The process by which oil is sourced and made available for use is referred to as the oil supply chain and involves three parts: (1) upstream, (2) midstream and (3) downstream activities. As consequence from oil supply chain activities, crude oils are subjected to biodeterioration, acidification and souring, and oil spills are frequently reported affecting not only the environment, but also the economy and human resources. Different bioremediation techniques based on microbial metabolism, such as natural attenuation, bioaugmentation, biostimulation are promising approaches to minimize the environmental impact of oil spills. The rate and efficiency of this process depend on multiple factors, like pH, oxygen content, temperature, availability and concentration of the pollutants and diversity and structure of the microbial community present in the affected (contaminated) area. Emerging approaches, such as (meta-)taxonomics and (meta-)genomics bring new insights into the molecular mechanisms of PAH microbial degradation at both single species and community levels in oil reservoirs and groundwater/seawater spills. We have scrutinized the microbiological aspects of biodegradation of PAHs naturally occurring in oil upstream activities (exploration and production), and crude oil and/or by-products spills in midstream (transport and storage) and downstream (refining and distribution) activities. This work addresses PAH biodegradation in different stages of oil supply chain affecting diverse environments (groundwater, seawater, oil reservoir) focusing on genes and pathways as well as key players involved in this process. In depth understanding of the biodegradation process will provide/improve knowledge for optimizing and monitoring bioremediation in oil spills cases and/or to impair the degradation in reservoirs avoiding deterioration of crude oil quality.
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Affiliation(s)
- Kelly J. Hidalgo
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Paulínia, Brazil
- Graduate Program in Genetics and Molecular Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil
| | - Isabel N. Sierra-Garcia
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Paulínia, Brazil
- Biology Department & Centre for Environmental and Marine Studies (CESAM), University of Aveiro, Aveiro, Portugal
| | - Bruna M. Dellagnezze
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Paulínia, Brazil
| | - Valéria Maia de Oliveira
- Microbial Resources Division, Research Center for Chemistry, Biology and Agriculture (CPQBA), University of Campinas (UNICAMP), Paulínia, Brazil
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Martinez-Varela A, Casas G, Piña B, Dachs J, Vila-Costa M. Large Enrichment of Anthropogenic Organic Matter Degrading Bacteria in the Sea-Surface Microlayer at Coastal Livingston Island (Antarctica). Front Microbiol 2020; 11:571983. [PMID: 33013806 PMCID: PMC7516020 DOI: 10.3389/fmicb.2020.571983] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/14/2020] [Indexed: 01/04/2023] Open
Abstract
The composition of bacteria inhabiting the sea-surface microlayer (SML) is poorly characterized globally and yet undescribed for the Southern Ocean, despite their relevance for the biogeochemistry of the surface ocean. We report the abundances and diversity of bacteria inhabiting the SML and the subsurface waters (SSL) determined from a unique sample set from a polar coastal ecosystem (Livingston Island, Antarctica). From early to late austral summer (January–March 2018), we consistently found a higher abundance of bacteria in the SML than in the SSL. The SML was enriched in some Gammaproteobacteria genus such as Pseudoalteromonas, Pseudomonas, and Colwellia, known to degrade a wide range of semivolatile, hydrophobic, and surfactant-like organic pollutants. Hydrocarbons and other synthetic chemicals including surfactants, such as perfluoroalkyl substances (PFAS), reach remote marine environments by atmospheric transport and deposition and by oceanic currents, and are known to accumulate in the SML. Relative abundances of specific SML-enriched bacterial groups were significantly correlated to concentrations of PFASs, taken as a proxy of hydrophobic anthropogenic pollutants present in the SML and its stability. Our observations provide evidence for an important pollutant-bacteria interaction in the marine SML. Given that pollutant emissions have increased during the Anthropocene, our results point to the need to assess chemical pollution as a factor modulating marine microbiomes in the contemporaneous and future oceans.
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Affiliation(s)
- Alícia Martinez-Varela
- Department of Environmental Chemistry, Institut de Diagnóstic Ambiental i Estudis de l'aigua, Consejo Superior de Investigaciones Científicas (IDAEA-CSIC), Barcelona, Spain
| | - Gemma Casas
- Department of Environmental Chemistry, Institut de Diagnóstic Ambiental i Estudis de l'aigua, Consejo Superior de Investigaciones Científicas (IDAEA-CSIC), Barcelona, Spain
| | - Benjamin Piña
- Department of Environmental Chemistry, Institut de Diagnóstic Ambiental i Estudis de l'aigua, Consejo Superior de Investigaciones Científicas (IDAEA-CSIC), Barcelona, Spain
| | - Jordi Dachs
- Department of Environmental Chemistry, Institut de Diagnóstic Ambiental i Estudis de l'aigua, Consejo Superior de Investigaciones Científicas (IDAEA-CSIC), Barcelona, Spain
| | - Maria Vila-Costa
- Department of Environmental Chemistry, Institut de Diagnóstic Ambiental i Estudis de l'aigua, Consejo Superior de Investigaciones Científicas (IDAEA-CSIC), Barcelona, Spain
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Aziz S, Ali MI, Farooq U, Jamal A, Liu FJ, He H, Guo H, Urynowicz M, Huang Z. Enhanced bioremediation of diesel range hydrocarbons in soil using biochar made from organic wastes. ENVIRONMENTAL MONITORING AND ASSESSMENT 2020; 192:569. [PMID: 32770276 DOI: 10.1007/s10661-020-08540-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 08/02/2020] [Indexed: 06/11/2023]
Abstract
Hydrocarbon contamination due to anthropogenic activities is a major environmental concern worldwide. The present study focuses on biochar prepared from fruit and vegetable waste and sewage sludge using a thermochemical approach and its application for the enhanced bioremediation (biostimulation and bioaugmentation) of diesel-polluted soil. The biochar was characterized using FTIR (Fourier-transform infrared spectroscopy), elemental analysis, surface area analysis, and pore analysis. Adsorption experiments showed that hydrocarbon degradation was attributed to biological processes rather than adsorption. The study found that various biochar amendments could significantly increase the rate of hydrocarbon biodegradation with removal efficiencies > 70%. Bioaugmentation using cow dung further improved the removal efficiency to 82%. Treatments showing the highest degree of removal efficiency indicated the presence of 27 different bacteria phyla with Proteobacteria and Actinobacteria as the most abundant phyla. The present study concludes that biochar amendments have great potential for enhancing the bioremediation of soils contaminated with diesel range hydrocarbons.
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Affiliation(s)
- Sadia Aziz
- Department of Microbiology, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Muhammad Ishtiaq Ali
- Department of Microbiology, Quaid-i-Azam University, Islamabad, 45320, Pakistan.
| | - Uzma Farooq
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Asif Jamal
- Department of Microbiology, Quaid-i-Azam University, Islamabad, 45320, Pakistan
| | - Fang-Jing Liu
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, 221116, China
| | - Huan He
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, 221116, China
| | - Hongguang Guo
- College of Mining Technology, Taiyuan University of Technology, Taiyuan, 030024, China
| | - Michael Urynowicz
- Department of Civil and Architectural Engineering, University of Wyoming, Laramie, WY, 82071, USA
| | - Zaixing Huang
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, 221116, China.
- Department of Civil and Architectural Engineering, University of Wyoming, Laramie, WY, 82071, USA.
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