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Kabir A, Bhattarai M, Peterson S, Najman-Licht Y, Rasmussen K, Shehu A, Bishop A, Alexandrov B, Usheva A. DNA breathing integration with deep learning foundational model advances genome-wide binding prediction of human transcription factors. Nucleic Acids Res 2024; 52:e91. [PMID: 39271116 PMCID: PMC11514457 DOI: 10.1093/nar/gkae783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Revised: 08/21/2024] [Accepted: 08/29/2024] [Indexed: 09/15/2024] Open
Abstract
It was previously shown that DNA breathing, thermodynamic stability, as well as transcriptional activity and transcription factor (TF) bindings are functionally correlated. To ascertain the precise relationship between TF binding and DNA breathing, we developed the multi-modal deep learning model EPBDxDNABERT-2, which is based on the Extended Peyrard-Bishop-Dauxois (EPBD) nonlinear DNA dynamics model. To train our EPBDxDNABERT-2, we used chromatin immunoprecipitation sequencing (ChIP-Seq) data comprising 690 ChIP-seq experimental results encompassing 161 distinct TFs and 91 human cell types. EPBDxDNABERT-2 significantly improves the prediction of over 660 TF-DNA, with an increase in the area under the receiver operating characteristic (AUROC) metric of up to 9.6% when compared to the baseline model that does not leverage DNA biophysical properties. We expanded our analysis to in vitro high-throughput Systematic Evolution of Ligands by Exponential enrichment (HT-SELEX) dataset of 215 TFs from 27 families, comparing EPBD with established frameworks. The integration of the DNA breathing features with DNABERT-2 foundational model, greatly enhanced TF-binding predictions. Notably, EPBDxDNABERT-2, trained on a large-scale multi-species genomes, with a cross-attention mechanism, improved predictive power shedding light on the mechanisms underlying disease-related non-coding variants discovered in genome-wide association studies.
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Affiliation(s)
- Anowarul Kabir
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
- Department of Computer Science, George Mason University, 4400 University Dr, 22030 VA, USA
| | - Manish Bhattarai
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
| | - Selma Peterson
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
| | | | - Kim Ø Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
| | - Amarda Shehu
- Department of Computer Science, George Mason University, 4400 University Dr, 22030 VA, USA
| | - Alan R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
| | - Boian Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544 NM, USA
| | - Anny Usheva
- Department of Surgery, Brown University, 69 Brown St Box 1822, 02912 RI, USA
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Dione MN, Shang S, Zhang Q, Zhao S, Lu X. Non-Thermal Effects of Terahertz Radiation on Gene Expression: Systematic Review and Meta-Analysis. Genes (Basel) 2024; 15:1045. [PMID: 39202405 PMCID: PMC11354197 DOI: 10.3390/genes15081045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Revised: 08/05/2024] [Accepted: 08/07/2024] [Indexed: 09/03/2024] Open
Abstract
With the advancement of terahertz technology, unveiling the mysteries of terahertz has had a profound impact on the field of biomedicine. However, the lack of systematic comparisons for gene expression signatures may diminish the effectiveness and efficiency of identifying common mechanisms underlying terahertz effects across diverse research findings. We performed a comprehensive review and meta-analysis to compile patterns of gene expression profiles associated with THz radiation. Thorough bibliographic reviews were conducted, utilizing the PubMed, Embase, Web of Science, and ProQuest databases to extract references from published articles. Raw CEL files were obtained from Gene Expression Omnibus and preprocessed using Bioconductor packages. This systematic review (Registration No. CDR42024502937) resulted in a detailed analysis of 13 studies (14 papers). There are several possible mechanisms and pathways through which THz radiation could cause biological changes. While the established gene expression results are largely associated with immune response and inflammatory markers, other genes demonstrated transcriptional outcomes that may unravel unknown functions. The enrichment of genes primarily found networks associated with broader stress responses. Altogether, the findings showed that THz can induce a distinct transcriptomic profile that is not associated with a microthermal cellular response. However, it is impossible to pinpoint a single gene or family of genes that would accurately and reliably justify the patterns of gene expression response under THz exposure.
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Affiliation(s)
- Mactar Ndiaga Dione
- School of Life Science and Technology, Xi’an Jiaotong University (XJTU), Xi’an 710049, China
| | - Sen Shang
- School of Life Science and Technology, Xi’an Jiaotong University (XJTU), Xi’an 710049, China
| | - Qi Zhang
- School of Life Science and Technology, Xi’an Jiaotong University (XJTU), Xi’an 710049, China
| | - Sicheng Zhao
- School of Life Science and Technology, Xi’an Jiaotong University (XJTU), Xi’an 710049, China
| | - Xiaoyun Lu
- School of Life Science and Technology, Xi’an Jiaotong University (XJTU), Xi’an 710049, China
- Key Laboratory of Biomedical Information Engineering of Ministry of Education, School of Life Science and Technology, Xi’an Jiaotong University, Xi’an 710049, China
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Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Bishop AR, Alexandrov B, Usheva A. Advancing Transcription Factor Binding Site Prediction Using DNA Breathing Dynamics and Sequence Transformers via Cross Attention. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.16.575935. [PMID: 38293094 PMCID: PMC10827174 DOI: 10.1101/2024.01.16.575935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
Understanding the impact of genomic variants on transcription factor binding and gene regulation remains a key area of research, with implications for unraveling the complex mechanisms underlying various functional effects. Our study delves into the role of DNA's biophysical properties, including thermodynamic stability, shape, and flexibility in transcription factor (TF) binding. We developed a multi-modal deep learning model integrating these properties with DNA sequence data. Trained on ChIP-Seq (chromatin immunoprecipitation sequencing) data in vivo involving 690 TF-DNA binding events in human genome, our model significantly improves prediction performance in over 660 binding events, with up to 9.6% increase in AUROC metric compared to the baseline model when using no DNA biophysical properties explicitly. Further, we expanded our analysis to in vitro high-throughput Systematic Evolution of Ligands by Exponential enrichment (SELEX) and Protein Binding Microarray (PBM) datasets, comparing our model with established frameworks. The inclusion of DNA breathing features consistently improved TF binding predictions across different cell lines in these datasets. Notably, for complex ChIP-Seq datasets, integrating DNABERT2 with a cross-attention mechanism provided greater predictive capabilities and insights into the mechanisms of disease-related non-coding variants found in genome-wide association studies. This work highlights the importance of DNA biophysical characteristics in TF binding and the effectiveness of multi-modal deep learning models in gene regulation studies.
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Affiliation(s)
- Anowarul Kabir
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, USA
- Department of Computer Science, George Mason University, 4400 University Dr, 22030, VA, USA
| | - Manish Bhattarai
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, USA
| | - Kim Ø Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, USA
| | - Amarda Shehu
- Department of Computer Science, George Mason University, 4400 University Dr, 22030, VA, USA
| | - Alan R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, USA
| | - Boian Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, USA
| | - Anny Usheva
- Department of Surgery, Brown University, 69 Brown St Box 1822, 02912, RI, USA
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Wang D, Zheng J, Sarsaiya S, Jin L, Chen J. Unveiling terahertz wave stress effects and mechanisms in Pinellia ternata: Challenges, insights, and future directions. PHYSIOLOGIA PLANTARUM 2024; 176:e14195. [PMID: 38332400 DOI: 10.1111/ppl.14195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 01/03/2024] [Accepted: 01/10/2024] [Indexed: 02/10/2024]
Abstract
This review aims to elucidate the intricate effects and mechanisms of terahertz (THz) wave stress on Pinellia ternata, providing valuable insights into plant responses. The primary objective is to highlight the imperative for future research dedicated to comprehending THz wave impacts across plant structures, with a specific focus on the molecular intricacies governing root system structure and function, from shoots to roots. Notably, this review highlights the accelerated plant growth induced by THz waves, especially in conjunction with other environmental stressors, and the subsequent alterations in cellular homeostasis, resulting in the generation of reactive oxygen species (ROS) and an increase in brassinosteroids. Brassinosteroids are explored for their dual role as toxic by-products of stress metabolism and vital signal transduction molecules in plant responses to abiotic stresses. The paper further investigates the spatio-temporal regulation and long-distance transport of phytohormones, including growth hormone, cytokinin, and abscisic acid (ABA), which significantly influence the growth and development of P. ternata under THz wave stress. With a comprehensive review of Reactive oxygen species (ROS) and Brassinosteroid Insensitive (BRI) homeostasis and signalling under THz wave stress, the article elucidates the current understanding of BRI involvement in stress perception, stress signalling, and domestication response regulation. Additionally, it underscores the importance of spatio-temporal regulation and long-distance transport of key plant hormones, such as growth hormone, cytokinin, and ABA, in determining root growth and development under THz wave stress. The study of how plants perceive and respond to environmental stresses holds fundamental biological significance, and enhancing plant stress tolerance is crucial for promoting sustainable agricultural practices and mitigating the environmental burdens associated with low-tolerance crop cultivation.
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Affiliation(s)
- Dongdong Wang
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, China
| | - Jiatong Zheng
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, China
| | - Surendra Sarsaiya
- Bioresource Institute for Healthy Utilization, Zunyi Medical University, Zunyi, Guizhou, China
| | - Leilei Jin
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, China
| | - Jishuang Chen
- College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University, Nanjing, Jiangsu, China
- Bioresource Institute for Healthy Utilization, Zunyi Medical University, Zunyi, Guizhou, China
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5
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Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov B. Examining DNA breathing with pyDNA-EPBD. Bioinformatics 2023; 39:btad699. [PMID: 37991847 PMCID: PMC10681863 DOI: 10.1093/bioinformatics/btad699] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 10/23/2023] [Accepted: 11/21/2023] [Indexed: 11/24/2023] Open
Abstract
MOTIVATION The two strands of the DNA double helix locally and spontaneously separate and recombine in living cells due to the inherent thermal DNA motion. This dynamics results in transient openings in the double helix and is referred to as "DNA breathing" or "DNA bubbles." The propensity to form local transient openings is important in a wide range of biological processes, such as transcription, replication, and transcription factors binding. However, the modeling and computer simulation of these phenomena, have remained a challenge due to the complex interplay of numerous factors, such as, temperature, salt content, DNA sequence, hydrogen bonding, base stacking, and others. RESULTS We present pyDNA-EPBD, a parallel software implementation of the Extended Peyrard-Bishop-Dauxois (EPBD) nonlinear DNA model that allows us to describe some features of DNA dynamics in detail. The pyDNA-EPBD generates genomic scale profiles of average base-pair openings, base flipping probability, DNA bubble probability, and calculations of the characteristically dynamic length indicating the number of base pairs statistically significantly affected by a single point mutation using the Markov Chain Monte Carlo algorithm. AVAILABILITY AND IMPLEMENTATION pyDNA-EPBD is supported across most operating systems and is freely available at https://github.com/lanl/pyDNA_EPBD. Extensive documentation can be found at https://lanl.github.io/pyDNA_EPBD/.
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Affiliation(s)
- Anowarul Kabir
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87544, United States
- Department of Computer Science, George Mason University, Fairfax, VA 22030, United States
| | - Manish Bhattarai
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87544, United States
| | - Kim Ø Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87544, United States
| | - Amarda Shehu
- Department of Computer Science, George Mason University, Fairfax, VA 22030, United States
| | - Anny Usheva
- Department of Surgery, Brown University, Providence, RI 02912, United States
| | - Alan R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87544, United States
| | - Boian Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87544, United States
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Kabir A, Bhattarai M, Rasmussen KØ, Shehu A, Usheva A, Bishop AR, Alexandrov BS. Examining DNA Breathing with pyDNA-EPBD. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.09.09.557010. [PMID: 37745370 PMCID: PMC10515784 DOI: 10.1101/2023.09.09.557010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/26/2023]
Abstract
Motivation The two strands of the DNA double helix locally and spontaneously separate and recombine in living cells due to the inherent thermal DNA motion.This dynamics results in transient openings in the double helix and is referred to as "DNA breathing" or "DNA bubbles." The propensity to form local transient openings is important in a wide range of biological processes, such as transcription, replication, and transcription factors binding. However, the modeling and computer simulation of these phenomena, have remained a challenge due to the complex interplay of numerous factors, such as, temperature, salt content, DNA sequence, hydrogen bonding, base stacking, and others. Results We present pyDNA-EPBD, a parallel software implementation of the Extended Peyrard-Bishop- Dauxois (EPBD) nonlinear DNA model that allows us to describe some features of DNA dynamics in detail. The pyDNA-EPBD generates genomic scale profiles of average base-pair openings, base flipping probability, DNA bubble probability, and calculations of the characteristically dynamic length indicating the number of base pairs statistically significantly affected by a single point mutation using the Markov Chain Monte Carlo (MCMC) algorithm.
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Affiliation(s)
- Anowarul Kabir
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, 87102
- George Mason University, 4400 University Dr, Fairfax, VA 22030
| | - Manish Bhattarai
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, 87102
| | - Kim Ø. Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, 87102
| | - Amarda Shehu
- George Mason University, 4400 University Dr, Fairfax, VA 22030
| | - Anny Usheva
- Brown University, 69 Brown St Box 1822, Providence, RI 02912
| | - Alan R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, 87102
| | - Boian S Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87544, NM, 87102
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Sitnikov D, Revkova V, Ilina I, Shatalova R, Komarov P, Struleva E, Konoplyannikov M, Kalsin V, Baklaushev V. Sensitivity of Neuroblastoma and Induced Neural Progenitor Cells to High-Intensity THz Radiation. Int J Mol Sci 2023; 24:6558. [PMID: 37047534 PMCID: PMC10095325 DOI: 10.3390/ijms24076558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/25/2023] [Accepted: 03/29/2023] [Indexed: 04/03/2023] Open
Abstract
THz radiation induces a variety of processes in cells and has attracted the attention of researchers in recent decades. Here, data on the effects of high-intensity terahertz (THz) radiation on human directly reprogrammed neural progenitor cells (drNPCs) and on neuroblastoma cells (SK-N-BE (2)) were obtained for the first time. The results demonstrated that the exposure of non-tumor and tumor cells to broadband (0.1-3 THz) THz pulses with the intensity of 21 GW/cm2 and the electric field strength of 2.8 MV/cm for 30 min induced neither a noticeable genotoxic effect nor a statistically significant change in the proliferative activity and cell differentiation. It was also shown that the combined effect of THz radiation and salinomycin, a promising antitumor agent, on neuroblastoma cells did not enhance the genotoxic effect of this antibiotic. However, further studies involving chemotherapy drugs and other exposure parameters are warranted to introduce this new concept into anti-tumor clinical practice and to enhance the efficacy of the existing approaches.
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Affiliation(s)
- Dmitry Sitnikov
- Joint Institute for High Temperatures, Russian Academy of Sciences, 125412 Moscow, Russia
| | - Veronika Revkova
- Federal Research and Clinical Center of Specialized Medical Care and Medical Technologies, Federal Medical-Biological Agency of Russia, 119435 Moscow, Russia
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991 Moscow, Russia
| | - Inna Ilina
- Joint Institute for High Temperatures, Russian Academy of Sciences, 125412 Moscow, Russia
| | - Rimma Shatalova
- Center for Genetics and Life Sciences, Division of Genetics and Genetic Technologies, Sirius University of Science and Technology, 354340 Sochi, Russia
| | - Pavel Komarov
- Joint Institute for High Temperatures, Russian Academy of Sciences, 125412 Moscow, Russia
| | - Evgenia Struleva
- Joint Institute for High Temperatures, Russian Academy of Sciences, 125412 Moscow, Russia
| | - Mikhail Konoplyannikov
- Federal Research and Clinical Center of Specialized Medical Care and Medical Technologies, Federal Medical-Biological Agency of Russia, 119435 Moscow, Russia
- Institute for Regenerative Medicine, Sechenov First Moscow State Medical University, 119435 Moscow, Russia
| | - Vladimir Kalsin
- Federal Research and Clinical Center of Specialized Medical Care and Medical Technologies, Federal Medical-Biological Agency of Russia, 119435 Moscow, Russia
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991 Moscow, Russia
| | - Vladimir Baklaushev
- Federal Research and Clinical Center of Specialized Medical Care and Medical Technologies, Federal Medical-Biological Agency of Russia, 119435 Moscow, Russia
- Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 119991 Moscow, Russia
- Federal Center of Brain Research and Neurotechnologies, Federal Medical-Biological Agency, 117513 Moscow, Russia
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Zhao L, Yi R, Liu S, Chi Y, Tan S, Dong J, Wang H, Zhang J, Wang H, Xu X, Yao B, Wang B, Peng R. Biological responses to terahertz radiation with different power density in primary hippocampal neurons. PLoS One 2023; 18:e0267064. [PMID: 36662735 PMCID: PMC9858065 DOI: 10.1371/journal.pone.0267064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 01/06/2023] [Indexed: 01/21/2023] Open
Abstract
Terahertz (THz) radiation is a valuable imaging and sensing tool which is widely used in industry and medicine. However, it biological effects including genotoxicity and cytotoxicity are lacking of research, particularly on the nervous system. In this study, we investigated how terahertz radiation with 10mW (0.12 THz) and 50 mW (0.157 THz) would affect the morphology, cell growth and function of rat hippocampal neurons in vitro.
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Affiliation(s)
- Li Zhao
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Ruhan Yi
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Sun Liu
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Yunliang Chi
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Shengzhi Tan
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Ji Dong
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Hui Wang
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Jing Zhang
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Haoyu Wang
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Xinping Xu
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Binwei Yao
- Beijing Institute of Radiation Medicine, Beijing, PR China
| | - Bo Wang
- Central Laboratory, Hainan General Hospital, Hainan Affiliated Hospital of Hainan Medical University, Haikou, Hainan, PR China
| | - Ruiyun Peng
- Beijing Institute of Radiation Medicine, Beijing, PR China
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Bannikova S, Khlebodarova T, Vasilieva A, Mescheryakova I, Bryanskaya A, Shedko E, Popik V, Goryachkovskaya T, Peltek S. Specific Features of the Proteomic Response of Thermophilic Bacterium Geobacillus icigianus to Terahertz Irradiation. Int J Mol Sci 2022; 23:ijms232315216. [PMID: 36499542 PMCID: PMC9735757 DOI: 10.3390/ijms232315216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/28/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022] Open
Abstract
Studying the effects of terahertz (THz) radiation on the proteome of temperature-sensitive organisms is limited by a number of significant technical difficulties, one of which is maintaining an optimal temperature range to avoid thermal shock as much as possible. In the case of extremophilic species with an increased temperature tolerance, it is easier to isolate the effects of THz radiation directly. We studied the proteomic response to terahertz radiation of the thermophilic Geobacillus icigianus, persisting under wide temperature fluctuations with a 60 °C optimum. The experiments were performed with a terahertz free-electron laser (FEL) from the Siberian Center for Synchrotron and Terahertz Radiation, designed and employed by the Institute of Nuclear Physics of the SB of the RAS. A G. icigianus culture in LB medium was THz-irradiated for 15 min with 0.23 W/cm2 and 130 μm, using a specially designed cuvette. The life cycle of this bacterium proceeds under conditions of wide temperature and osmotic fluctuations, which makes its enzyme systems stress-resistant. The expression of several proteins was shown to change immediately after fifteen minutes of irradiation and after ten minutes of incubation at the end of exposure. The metabolic systems of electron transport, regulation of transcription and translation, cell growth and chemotaxis, synthesis of peptidoglycan, riboflavin, NADH, FAD and pyridoxal phosphate cofactors, Krebs cycle, ATP synthesis, chaperone and protease activity, and DNA repair, including methylated DNA, take part in the fast response to THz radiation. When the response developed after incubation, the systems of the cell's anti-stress defense, chemotaxis, and, partially, cell growth were restored, but the respiration and energy metabolism, biosynthesis of riboflavin, cofactors, peptidoglycan, and translation system components remained affected and the amino acid metabolism system was involved.
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Affiliation(s)
- Svetlana Bannikova
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Correspondence:
| | - Tamara Khlebodarova
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Asya Vasilieva
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Irina Mescheryakova
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Alla Bryanskaya
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Elizaveta Shedko
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Vasily Popik
- Budker Institute of Nuclear Physics, Siberian Branch Russian Academy of Sciences (SB RAS), 11 Acad. Lavrentieva Pr., 630090 Novosibirsk, Russia
| | - Tatiana Goryachkovskaya
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
| | - Sergey Peltek
- Federal Research Center Institute of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
- Kurchatov Genomic Center of Cytology and Genetics (ICG), Siberian Branch of Russian Academy of Sciences (SB RAS), 10 Lavrentiev Ave., 630090 Novosibirsk, Russia
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A Comparative Study on the Viability of Normal and Cancerous Cells upon Irradiation with a Steady Beam of THz Rays. Life (Basel) 2022; 12:life12030376. [PMID: 35330127 PMCID: PMC8951499 DOI: 10.3390/life12030376] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/01/2022] [Indexed: 11/17/2022] Open
Abstract
Terahertz (THz) electromagnetic radiation is commonly used in astronomy, security screening, imaging, and biomedicine, among other applications. Such approach has raised the question of the influence of THz irradiation on biological objects, especially the human body. However, the results obtained to date are quite controversial. Therefore, we performed a comparative study on the viability of normal cells and cancer cells upon irradiation with a steady beam of THz rays. We used human peripheral blood mononuclear cells and cancer cell lines. Primary human mononuclear blood cells (monocytes, and B-, and T-cells) showed an increased death rate, determined by cell counting and fluorescence microscopy, upon 0.14 THz irradiation. The effect of THz radiation was different among malignant cells of B- and T-cell origin (Ramos and Jurkat cells) and epithelial cancer cells (MCF7 and LNCaP). This was demonstrated by cell counting and by the alamarBlue assay. In conclusion, THz radiation can result in the death of human primary and malignant cells. However, the mechanism of this phenomenon is largely unknown. Hence, more work should be done to shed some light on the mechanism of action of THz irradiation in living organisms to enhance technologic developments.
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Yan Z, Zhu LG, Meng K, Huang W, Shi Q. THz medical imaging: from in vitro to in vivo. Trends Biotechnol 2022; 40:816-830. [PMID: 35012774 DOI: 10.1016/j.tibtech.2021.12.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 11/22/2021] [Accepted: 12/06/2021] [Indexed: 01/29/2023]
Abstract
Terahertz (THz) radiation has attracted considerable attention in medical imaging owing to its nonionizing and spectral fingerprinting characteristics. To date, most studies have focused on in vitro and ex vivo objects with water-removing pretreatment because the water in vivo excessively absorbs the THz waves, which causes deterioration of the image quality. In this review, we discuss how THz medical imaging can be used for a living body. The development of imaging contrast agents has been particularly useful to this end. In addition, we also introduce progress in novel THz imaging methods that could be more suitable for in vivo applications. Based on our discussions, we chart a developmental roadmap to take THz medical imaging from in vitro to in vivo.
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Affiliation(s)
- Zhiyao Yan
- College of Material Science and Engineering, Sichuan University, Chengdu, Sichuan 610064, China
| | - Li-Guo Zhu
- Institute of Fluid Physics, China Academy of Engineering Physics, Mianyang, Sichuan 621900, China; Microsystem and Terahertz Research Center, China Academy of Engineering Physics, Chengdu, Sichuan 610200, China
| | - Kun Meng
- Qingdao QUNDA Terahertz Technology Co. Ltd, Qingdao, Shandong 266104, China
| | - Wanxia Huang
- College of Material Science and Engineering, Sichuan University, Chengdu, Sichuan 610064, China
| | - Qiwu Shi
- College of Material Science and Engineering, Sichuan University, Chengdu, Sichuan 610064, China.
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12
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Zhou C, Xiong L, Zhou X, Li L, Yan Q. Transcriptome profiling of guinea pig skin exposed to a high-power terahertz source. ENVIRONMENTAL AND MOLECULAR MUTAGENESIS 2021; 63:29-36. [PMID: 34954859 PMCID: PMC9303439 DOI: 10.1002/em.22470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 12/14/2021] [Accepted: 12/24/2021] [Indexed: 02/05/2023]
Abstract
Terahertz (THz) radiation has a wide range of applications including use in medicine. However, effects of high‐power THz radiation have not been clearly elucidated. We used a 2.52 THz self‐made optically pumped gas THz laser, the low‐ and high‐energy group, to irradiate the backs of Hartley guinea pigs. RNA‐sequencing was done to explore global transcriptional responses in the irradiated skin. Gene Ontology analysis revealed that differentially expressed genes (DEGs) between the unexposed and low‐energy exposed groups were associated with skin development, skin barrier establishment, and multicellular organismal water homeostasis or water loss regulation via the skin. On the other hand, comparison between the unexposed and high‐energy exposed groups showed that the DEGs mediated monocarboxylic acid metabolism, blood vessel morphogenesis, establishment of skin barrier, blood vessel development, or angiogenesis. Our analyses demonstrate the potential effects of high‐power THz source on the skin and sets the basis for further studies on the safety and application of the high‐power THz in dermatology.
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Affiliation(s)
- Chengxia Zhou
- Department of Dermatology, West China Hospital, Sichuan University, Chengdu, China
| | - Lidan Xiong
- Cosmetics Safety and Efficacy Evaluation Center, West China Hospital, Sichuan University, Chengdu, China.,NMPA Key Laboratory for Human Evaluation and Big Data of Cosmetics, Chengdu, China.,Sichuan Engineering Technology Research Center of Cosmetic, Chengdu, China
| | - Xun Zhou
- Research Center of Laser Fusion, CAEP, Mianyang, China
| | - Li Li
- Department of Dermatology, West China Hospital, Sichuan University, Chengdu, China
| | - Qiang Yan
- Research Center of Laser Fusion, CAEP, Mianyang, China
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13
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Zhao X, Zhang M, Liu Y, Liu H, Ren K, Xue Q, Zhang H, Zhi N, Wang W, Wu S. Terahertz exposure enhances neuronal synaptic transmission and oligodendrocyte differentiation in vitro. iScience 2021; 24:103485. [PMID: 34927027 PMCID: PMC8649796 DOI: 10.1016/j.isci.2021.103485] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 10/06/2021] [Accepted: 11/19/2021] [Indexed: 11/24/2022] Open
Abstract
Terahertz (THz) frequency occupies a large portion of the electromagnetic spectrum that is between the infrared and microwave regions. Recent advances in THz application have stimulated interests regarding the biological effects within this frequency range. In the current study, we report that irradiation with a single-frequency THz laser on mice cortical neuron cultures increases excitatory synaptic transmission and neuronal firing activities. Microarray assay reveals gene expression dynamics after THz exposure, which is consistent with morphology and electrophysiology results. Besides, certain schedule of THz irradiation inhibits the proliferation of oligodendrocyte precursor cells (OPCs) and promotes OPC differentiation. Of note, the myelination process is enhanced after THz exposure. In summary, our observations suggest that THz irradiation can modulate the functions of different neuronal cells, with different sensitivity to THz. These results provide important understanding of the mechanisms that govern THz interactions with nervous systems and suggest THz wave as a new strategy for neuromodulation. THz irradiation increases excitatory synaptic transmission and neuronal firing Microarray assay reveals neuronal gene expression dynamics after THz exposure THz irradiation promotes the maturation of oligodendrocytes The myelination process in neuron is enhanced after THz exposure
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Affiliation(s)
- Xianghui Zhao
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Ming Zhang
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Yuming Liu
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Haiying Liu
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Keke Ren
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Qian Xue
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Haifeng Zhang
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Na Zhi
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China.,College of Life Sciences, Northwest University, Xi'an, Shaanxi 710127, China
| | - Wenting Wang
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
| | - Shengxi Wu
- Department of Neurobiology, School of Basic Medicine, Fourth Military Medical University, Xi'an, Shaanxi 710032, China
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14
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Wörmann SM, Zhang A, Thege FI, Cowan RW, Rupani DN, Wang R, Manning SL, Gates C, Wu W, Levin-Klein R, Rajapakshe KI, Yu M, Multani AS, Kang Y, Taniguchi CM, Schlacher K, Bellin MD, Katz MHG, Kim MP, Fleming JB, Gallinger S, Maddipati R, Harris RS, Notta F, Ross SR, Maitra A, Rhim AD. APOBEC3A drives deaminase domain-independent chromosomal instability to promote pancreatic cancer metastasis. NATURE CANCER 2021; 2:1338-1356. [PMID: 35121902 DOI: 10.1038/s43018-021-00268-8] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Accepted: 09/14/2021] [Indexed: 02/06/2023]
Abstract
Despite efforts in understanding its underlying mechanisms, the etiology of chromosomal instability (CIN) remains unclear for many tumor types. Here, we identify CIN initiation as a previously undescribed function for APOBEC3A (A3A), a cytidine deaminase upregulated across cancer types. Using genetic mouse models of pancreatic ductal adenocarcinoma (PDA) and genomics analyses in human tumor cells we show that A3A-induced CIN leads to aggressive tumors characterized by enhanced early dissemination and metastasis in a STING-dependent manner and independently of the canonical deaminase functions of A3A. We show that A3A upregulation recapitulates numerous copy number alterations commonly observed in patients with PDA, including co-deletions in DNA repair pathway genes, which in turn render these tumors susceptible to poly (ADP-ribose) polymerase inhibition. Overall, our results demonstrate that A3A plays an unexpected role in PDA as a specific driver of CIN, with significant effects on disease progression and treatment.
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Affiliation(s)
- Sonja M Wörmann
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA.
- Department of Translational Molecular Pathology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA.
| | - Amy Zhang
- Ontario Institute for Cancer Research, Toronto, Ontario, Canada
| | - Fredrik I Thege
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Translational Molecular Pathology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Robert W Cowan
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Gastroenterology, Hepatology & Nutrition, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Dhwani N Rupani
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Gastroenterology, Hepatology & Nutrition, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Runsheng Wang
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Gastroenterology, Hepatology & Nutrition, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Sara L Manning
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Gastroenterology, Hepatology & Nutrition, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Chris Gates
- BRCF Bioinformatics Core, University of Michigan, School of Medicine, Ann Arbor, MI, USA
| | - Weisheng Wu
- BRCF Bioinformatics Core, University of Michigan, School of Medicine, Ann Arbor, MI, USA
| | - Rena Levin-Klein
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA
- Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
- Institute for Molecular Virology, University of Minnesota, Minneapolis, MN, USA
| | - Kimal I Rajapakshe
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Meifang Yu
- Department of Experimental Radiation Oncology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Asha S Multani
- Department of Genetics, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Ya'an Kang
- Department of Surgical Oncology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Cullen M Taniguchi
- Department of Experimental Radiation Oncology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Katharina Schlacher
- Department of Cancer Biology, Division of Basic Science Research, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
| | - Melena D Bellin
- University of Minnesota Medical Center, Schulze Diabetes Institute, Minneapolis, MN, USA
| | - Matthew H G Katz
- Department of Surgical Oncology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Michael P Kim
- Department of Surgical Oncology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Jason B Fleming
- Department of Gastrointestinal Oncology, H. Lee Moffitt Cancer Center, Tampa, FL, USA
| | | | - Ravikanth Maddipati
- Department of Internal Medicine and Hamon Center for Therapeutic Oncology Research and Children's Research Institute, UT Southwestern Medical Center, Dallas, TX, USA
| | - Reuben S Harris
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN, USA
- Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA
- Institute for Molecular Virology, University of Minnesota, Minneapolis, MN, USA
- Howard Hughes Medical Institute, University of Minnesota, Minneapolis, Minnesota, USA
| | - Faiyaz Notta
- Ontario Institute for Cancer Research, Toronto, Ontario, Canada
| | - Susan R Ross
- Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Department of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, IL, USA
| | - Anirban Maitra
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
- Department of Translational Molecular Pathology, MD Anderson Cancer Center, University of Texas, Houston, TX, USA
| | - Andrew D Rhim
- Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX, USA.
- Department of Gastroenterology, Hepatology & Nutrition, MD Anderson Cancer Center, University of Texas, Houston, TX, USA.
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15
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Cherkasova OP, Serdyukov DS, Nemova EF, Ratushnyak AS, Kucheryavenko AS, Dolganova IN, Xu G, Skorobogatiy M, Reshetov IV, Timashev PS, Spektor IE, Zaytsev KI, Tuchin VV. Cellular effects of terahertz waves. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-210179VR. [PMID: 34595886 PMCID: PMC8483303 DOI: 10.1117/1.jbo.26.9.090902] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 09/08/2021] [Indexed: 05/15/2023]
Abstract
SIGNIFICANCE An increasing interest in the area of biological effects at exposure of tissues and cells to the terahertz (THz) radiation is driven by a rapid progress in THz biophotonics, observed during the past decades. Despite the attractiveness of THz technology for medical diagnosis and therapy, there is still quite limited knowledge about safe limits of THz exposure. Different modes of THz exposure of tissues and cells, including continuous-wave versus pulsed radiation, various powers, and number and duration of exposure cycles, ought to be systematically studied. AIM We provide an overview of recent research results in the area of biological effects at exposure of tissues and cells to THz waves. APPROACH We start with a brief overview of general features of the THz-wave-tissue interactions, as well as modern THz emitters, with an emphasis on those that are reliable for studying the biological effects of THz waves. Then, we consider three levels of biological system organization, at which the exposure effects are considered: (i) solutions of biological molecules; (ii) cultures of cells, individual cells, and cell structures; and (iii) entire organs or organisms; special attention is devoted to the cellular level. We distinguish thermal and nonthermal mechanisms of THz-wave-cell interactions and discuss a problem of adequate estimation of the THz biological effects' specificity. The problem of experimental data reproducibility, caused by rareness of the THz experimental setups and an absence of unitary protocols, is also considered. RESULTS The summarized data demonstrate the current stage of the research activity and knowledge about the THz exposure on living objects. CONCLUSIONS This review helps the biomedical optics community to summarize up-to-date knowledge in the area of cell exposure to THz radiation, and paves the ways for the development of THz safety standards and THz therapeutic applications.
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Affiliation(s)
- Olga P. Cherkasova
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
- Novosibirsk State Technical University, Russian Federation
| | - Danil S. Serdyukov
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
- Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Eugenia F. Nemova
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Alexander S. Ratushnyak
- Institute of Computational Technologies of the Siberian Branch of the Russian Academy of Sciences, Russian Federation
| | - Anna S. Kucheryavenko
- Institute of Solid State Physics of the Russian Academy of Sciences, Russian Federation
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
| | - Irina N. Dolganova
- Institute of Solid State Physics of the Russian Academy of Sciences, Russian Federation
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Sechenov University, World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Russian Federation
| | - Guofu Xu
- Polytechnique Montreal, Department of Engineering Physics, Canada
| | | | - Igor V. Reshetov
- Sechenov University, Institute for Cluster Oncology, Russian Federation
- Academy of Postgraduate Education FSCC FMBA, Russian Federation
| | - Peter S. Timashev
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Sechenov University, World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Russian Federation
- N.N. Semenov Institute of Chemical Physics, Department of Polymers and Composites, Russian Federation
- Lomonosov Moscow State University, Department of Chemistry, Russian Federation
| | - Igor E. Spektor
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
| | - Kirill I. Zaytsev
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Russian Federation
- Sechenov University, Institute for Regenerative Medicine, Russian Federation
- Bauman Moscow State Technical University, Russian Federation
| | - Valery V. Tuchin
- Saratov State University, Russian Federation
- Institute of Precision Mechanics and Control of the Russian Academy of Sciences, Russian Federation
- National Research Tomsk State University, Russian Federation
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16
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Yamazaki S, Ueno Y, Hosoki R, Saito T, Idehara T, Yamaguchi Y, Otani C, Ogawa Y, Harata M, Hoshina H. THz irradiation inhibits cell division by affecting actin dynamics. PLoS One 2021; 16:e0248381. [PMID: 34339441 PMCID: PMC8328307 DOI: 10.1371/journal.pone.0248381] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2021] [Accepted: 07/17/2021] [Indexed: 11/25/2022] Open
Abstract
Biological phenomena induced by terahertz (THz) irradiation are described in recent reports, but underlying mechanisms, structural and dynamical change of specific molecules are still unclear. In this paper, we performed time-lapse morphological analysis of human cells and found that THz irradiation halts cell division at cytokinesis. At the end of cytokinesis, the contractile ring, which consists of filamentous actin (F-actin), needs to disappear; however, it remained for 1 hour under THz irradiation. Induction of the functional structures of F-actin was also observed in interphase cells. Similar phenomena were also observed under chemical treatment (jasplakinolide), indicating that THz irradiation assists actin polymerization. We previously reported that THz irradiation enhances the polymerization of purified actin in vitro; our current work shows that it increases cytoplasmic F-actin in vivo. Thus, we identified one of the key biomechanisms affected by THz waves.
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Affiliation(s)
- Shota Yamazaki
- Terahertz Sensing and Imaging Research Team, RIKEN Center for Advanced Photonics, Sendai, Miyagi, Japan
- * E-mail: (SY); (MH); (HH)
| | - Yuya Ueno
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Sendai, Miyagi, Japan
| | - Ryosuke Hosoki
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Sendai, Miyagi, Japan
| | - Takanori Saito
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Sendai, Miyagi, Japan
| | - Toshitaka Idehara
- Research Center for Development of Far-Infrared Region, University of Fukui (FIR UF), Bunkyo, Fukui, Japan
| | - Yuusuke Yamaguchi
- Research Center for Development of Far-Infrared Region, University of Fukui (FIR UF), Bunkyo, Fukui, Japan
| | - Chiko Otani
- Terahertz Sensing and Imaging Research Team, RIKEN Center for Advanced Photonics, Sendai, Miyagi, Japan
| | - Yuichi Ogawa
- Laboratory of Bio-Sensing Engineering, Graduate School of Agriculture, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto, Japan
| | - Masahiko Harata
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Sendai, Miyagi, Japan
- * E-mail: (SY); (MH); (HH)
| | - Hiromichi Hoshina
- Terahertz Sensing and Imaging Research Team, RIKEN Center for Advanced Photonics, Sendai, Miyagi, Japan
- * E-mail: (SY); (MH); (HH)
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17
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Shang S, Wu X, Zhang Q, Zhao J, Hu E, Wang L, Lu X. 0.1 THz exposure affects primary hippocampus neuron gene expression via alternating transcription factor binding. BIOMEDICAL OPTICS EXPRESS 2021; 12:3729-3742. [PMID: 34221691 PMCID: PMC8221933 DOI: 10.1364/boe.426928] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/09/2021] [Accepted: 05/24/2021] [Indexed: 05/15/2023]
Abstract
In recent years, many studies have been conducted to investigate the influence of terahertz (THz) radiation on the gene expression in various cell types, but the underling molecular mechanism has not yet been fully revealed. In this study, we explored the effects of 0.1 THz radiation on the gene expression in primary neuron cells through RNA-seq analysis. 111 up-regulated and 54 down-regulated genes were identified. Several biomolecule binding related categories such as "long-chain fatty acid binding", "tropomyosin binding", "BMP receptor binding", as well as "GTPase binding" and "phospholipid binding" were enriched by GO analysis. Moreover, the GSEA analysis indicated that genes encoding protein biosynthetic machinery ribosome were up-regulated by 0.1 THz irradiation. In addition, we demonstrated that the binding efficiency of a transcription factor (TF) AP-1 with its transcription factor binding site (TFBS) in DNA was reduced by THz irradiation, which suggested that THz irradiation might affect the interaction between TFs with DNA and consequently regulate the gene expression. Our results provide new insights into the biological effects of terahertz irradiation.
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18
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Sun L, Zhao L, Peng RY. Research progress in the effects of terahertz waves on biomacromolecules. Mil Med Res 2021; 8:28. [PMID: 33894781 PMCID: PMC8070290 DOI: 10.1186/s40779-021-00321-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 04/14/2021] [Indexed: 11/13/2022] Open
Abstract
With the rapid development of terahertz technologies, basic research and applications of terahertz waves in biomedicine have attracted increasing attention. The rotation and vibrational energy levels of biomacromolecules fall in the energy range of terahertz waves; thus, terahertz waves might interact with biomacromolecules. Therefore, terahertz waves have been widely applied to explore features of the terahertz spectrum of biomacromolecules. However, the effects of terahertz waves on biomacromolecules are largely unexplored. Although some progress has been reported, there are still numerous technical barriers to clarifying the relation between terahertz waves and biomacromolecules and to realizing the accurate regulation of biological macromolecules by terahertz waves. Therefore, further investigations should be conducted in the future. In this paper, we reviewed terahertz waves and their biomedical research advantages, applications of terahertz waves on biomacromolecules and the effects of terahertz waves on biomacromolecules. These findings will provide novel ideas and methods for the research and application of terahertz waves in the biomedical field.
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Affiliation(s)
- Liu Sun
- Beijing Institute of Radiation Medicine, Haidian District, 27 Taiping Road, Beijing, 100850, China
| | - Li Zhao
- Beijing Institute of Radiation Medicine, Haidian District, 27 Taiping Road, Beijing, 100850, China.
| | - Rui-Yun Peng
- Beijing Institute of Radiation Medicine, Haidian District, 27 Taiping Road, Beijing, 100850, China.
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19
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Kuzmin IV, Mironov SY, Martyanov MA, Potemkin AK, Khazanov EA. Highly efficient fourth harmonic generation of broadband laser pulses retaining 3D pulse shape. APPLIED OPTICS 2021; 60:3128-3135. [PMID: 33983209 DOI: 10.1364/ao.422601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Accepted: 03/15/2021] [Indexed: 06/12/2023]
Abstract
A method for highly efficient fourth harmonic generation (FHG) retaining spatiotemporal intensity distribution of broadband chirped laser pulses is proposed. It is based on the use of pulses with linear frequency chirps of equal absolute magnitudes and opposite signs at the oo-e type noncollinear second harmonic generation. Fourth harmonic generation can by obtained by the classical method, since the second harmonic pulse is narrowband and spectrally limited. A possibility to retain the three-dimensional (3D) structure of the field at FHG with a conversion efficiency ∼60% is demonstrated by the numerical simulation of 3D pulses with a quasi-ellipsoidal intensity distribution.
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20
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Mizuno M, Kitahara H, Sasaki K, Tani M, Kojima M, Suzuki Y, Tasaki T, Tatematsu Y, Fukunari M, Wake K. Dielectric property measurements of corneal tissues for computational dosimetry of the eye in terahertz band in vivo and in vitro. BIOMEDICAL OPTICS EXPRESS 2021; 12:1295-1307. [PMID: 33796354 PMCID: PMC7984789 DOI: 10.1364/boe.412769] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 01/16/2021] [Accepted: 01/27/2021] [Indexed: 05/08/2023]
Abstract
The dielectric constant of the normal corneal tissue of a rabbit eye was obtained in vitro in the range from approximately 0.1 to 1 THz, and the drying process on the eye surface exposed to high-power terahertz waves was investigated by in vivo reflectance measurement using terahertz time-domain spectroscopy. When the rabbit eye was exposed to terahertz waves at 162 GHz for 6 min with an irradiation power of 360 or 480 mW/cm2, the reflectance temporally increased and then decreased with a temperature increase. Based on multiple-reflection calculation using the dielectric constant and anterior segment optical coherence tomography images, those changes in reflectance were attributed to drying of the tear and epithelium of the cornea, respectively. Furthermore, the drying progressed over a temperature increase of around 5°C under our exposure conditions. These findings suggest that the possibility of eye damage increases with the progress of drying and that the setting of the eye surface conditions can be a cause of disagreement between computational and experimental data of absorbed energy under high-level irradiation because reflectance is related to terahertz wave penetration in the eye tissue. The time-domain spectroscopic measurements were useful for the acquisition of the dielectric constant as well as for the real-time monitoring of the eye conditions during exposure measurement.
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Affiliation(s)
- Maya Mizuno
- National Institute of Information and Communications Technology, Koganei, Tokyo 184-8795, Japan
| | - Hideaki Kitahara
- Research Center for Development of Far-Infrared Region, University of Fukui, Fukui 910-8507, Japan
| | - Kensuke Sasaki
- National Institute of Information and Communications Technology, Koganei, Tokyo 184-8795, Japan
| | - Masahiko Tani
- Research Center for Development of Far-Infrared Region, University of Fukui, Fukui 910-8507, Japan
| | - Masami Kojima
- Medical Research Institute, Kanazawa Medical University, Kahoku, Ishikawa 920-0293, Japan
| | - Yukihisa Suzuki
- Graduate School of Systems Design, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan
| | - Takafumi Tasaki
- Medical Research Institute, Kanazawa Medical University, Kahoku, Ishikawa 920-0293, Japan
- Department of Medical Zoology, Kanazawa Medical University, Kahoku, Ishikawa 920-0293, Japan
| | - Yoshinori Tatematsu
- Research Center for Development of Far-Infrared Region, University of Fukui, Fukui 910-8507, Japan
| | - Masafumi Fukunari
- Research Center for Development of Far-Infrared Region, University of Fukui, Fukui 910-8507, Japan
| | - Kanako Wake
- National Institute of Information and Communications Technology, Koganei, Tokyo 184-8795, Japan
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21
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Serdyukov DS, Goryachkovskaya TN, Mescheryakova IA, Kuznetsov SA, Popik VM, Peltek SE. Fluorescent bacterial biosensor E. coli/pTdcR-TurboYFP sensitive to terahertz radiation. BIOMEDICAL OPTICS EXPRESS 2021; 12:705-721. [PMID: 33680537 PMCID: PMC7901329 DOI: 10.1364/boe.412074] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 11/16/2020] [Accepted: 11/17/2020] [Indexed: 05/05/2023]
Abstract
A fluorescent biosensor E. coli/pTdcR-TurboYFP sensitive to terahertz (THz) radiation was developed via transformation of Escherichia coli (E. coli) cells with plasmid, in which the promotor of the tdcR gene controls the expression of yellow fluorescent protein TurboYFP. The biosensor was exposed to THz radiation in various vessels and nutrient media. The threshold and dynamics of fluorescence were found to depend on irradiation conditions. Heat shock or chemical stress yielded the absence of fluorescence induction. The biosensor is applicable to studying influence of THz radiation on the activity of tdcR promotor that is involved in the transport and metabolism of threonine and serine in E. coli.
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Affiliation(s)
- Danil S. Serdyukov
- Laboratory of Molecular Biotechnologies of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
- Kurchatov Genomics Center of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, 15B Lavrentiev Aven., Novosibirsk, 630090, Russia
| | - Tatiana N. Goryachkovskaya
- Laboratory of Molecular Biotechnologies of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
- Kurchatov Genomics Center of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
| | - Irina A. Mescheryakova
- Laboratory of Molecular Biotechnologies of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
- Kurchatov Genomics Center of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
| | - Sergei A. Kuznetsov
- Physics Department of Novosibirsk State University, 2 Pirogov Str., Novosibirsk, 630090, Russia
- Technological Design Institute of Applied Microelectronics — Novosibirsk Branch of Rzhanov Institute of Semiconductor Physics of the Siberian Branch of the Russian Academy of Sciences, 2/1 Lavrentiev Aven., Novosibirsk, 630090, Russia
| | - Vasiliy M. Popik
- Budker Institute of Nuclear Physics of the Siberian Branch of the Russian Academy of Sciences, 11 Lavrentiev Aven., Novosibirsk, 630090, Russia
| | - Sergey E. Peltek
- Laboratory of Molecular Biotechnologies of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
- Kurchatov Genomics Center of Federal research center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Aven., Novosibirsk, 630090, Russia
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22
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Nikitkina AI, Bikmulina PY, Gafarova ER, Kosheleva NV, Efremov YM, Bezrukov EA, Butnaru DV, Dolganova IN, Chernomyrdin NV, Cherkasova OP, Gavdush AA, Timashev PS. Terahertz radiation and the skin: a review. JOURNAL OF BIOMEDICAL OPTICS 2021; 26:JBO-200356VSSR. [PMID: 33583155 PMCID: PMC7881098 DOI: 10.1117/1.jbo.26.4.043005] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Accepted: 01/19/2021] [Indexed: 05/02/2023]
Abstract
SIGNIFICANCE Terahertz (THz) radiation has demonstrated a great potential in biomedical applications over the past three decades, mainly due to its non-invasive and label-free nature. Among all biological specimens, skin tissue is an optimal sample for the application of THz-based methods because it allows for overcoming some intrinsic limitations of the technique, such as a small penetration depth (0.1 to 0.3 mm for the skin, on average). AIM We summarize the modern research results achieved when THz technology was applied to the skin, considering applications in both imaging/detection and treatment/modulation of the skin constituents. APPROACH We perform a review of literature and analyze the recent research achievements in THz applications for skin diagnosis and investigation. RESULTS The reviewed results demonstrate the possibilities of THz spectroscopy and imaging, both pulsed and continuous, for diagnosis of skin melanoma and non-melanoma cancer, dysplasia, scars, and diabetic condition, mainly based on the analysis of THz optical properties. The possibility of modulating cell activity and treatment of various diseases by THz-wave exposure is shown as well. CONCLUSIONS The rapid development of THz technologies and the obtained research results for skin tissue highlight the potential of THz waves as a research and therapeutic instrument. The perspectives on the use of THz radiation are related to both non-invasive diagnostics and stimulation and control of different processes in a living skin tissue for regeneration and cancer treatment.
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Affiliation(s)
| | - Polina Y. Bikmulina
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Moscow, Russia
| | - Elvira R. Gafarova
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Moscow, Russia
| | - Nastasia V. Kosheleva
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Moscow, Russia
- Federal State Budgetary Scientific Institution “Institute of General Pathology and Pathophysiology,” Moscow, Russia
| | - Yuri M. Efremov
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Moscow, Russia
| | - Evgeny A. Bezrukov
- Sechenov University, Institute for Urology and Reproductive Health, Moscow, Russia
| | - Denis V. Butnaru
- Sechenov University, Institute for Urology and Reproductive Health, Moscow, Russia
| | - Irina N. Dolganova
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- Russian Academy of Sciences, Institute of Solid State Physics, Chernogolovka, Russia
- Bauman Moscow State Technical University, Moscow, Russia
| | - Nikita V. Chernomyrdin
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- Russian Academy of Sciences, Prokhorov General Physics Institute, Moscow, Russia
| | - Olga P. Cherkasova
- Russian Academy of Sciences, Institute of Laser Physics of the Siberian Branch, Novosibirsk, Russia
- Novosibirsk State Technical University, Novosibirsk, Russia
| | - Arsenii A. Gavdush
- Russian Academy of Sciences, Prokhorov General Physics Institute, Moscow, Russia
| | - Peter S. Timashev
- Sechenov University, Institute for Regenerative Medicine, Moscow, Russia
- World-Class Research Center “Digital Biodesign and Personalized Healthcare,” Moscow, Russia
- N. N. Semenov Institute of Chemical Physics, Department of Polymers and Composites, Moscow, Russia
- Lomonosov Moscow State University, Chemistry Department, Moscow, Russia
- Address all correspondence to Peter S. Timashev,
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23
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Oates RP. Role of Brownian Particle Velocity in Bioelectronic Emissions of DNA. Bioelectricity 2020; 2:399-404. [PMID: 34476369 DOI: 10.1089/bioe.2020.0017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Hypothesis: If double stranded DNA (dsDNA) is a charged biomolecule that moves in Earth's magnetic field at a Brownian velocity, then dsDNA may emit bioelectromagnetic waves at energies that reflect discrete genetic states. Methods: This work leverages the Planck-Einstein-de Broglie relationship and applies this concept to Brownian velocity of dsDNA within a cell, to describe the relationship between dsDNA mass, the average Brownian velocity of dsDNA within a cell, and the theoretical wavelengths at which DNA may emit bioelectromagnetic waves. Results: Theoretical emission wavelengths of dsDNA, derived from first principles, were found to correlate closely with experimentally observed emission wavelengths from spectroscopic measurements across various cellular systems in the literature. Conclusion: This work provides a conceptual basis for the potential for unification of bioelectromagnetism with Brownian motion, to elucidate how electromagnetic information can be generated at a subcellular level in biological systems. The implications of how finite mass changes in dsDNA can result in discrete emission wavelengths on electromagnetic timescales is discussed through the lens of genomics. Future refinements of this fundamental methodology may provide a conceptual basis to address previously unexplained multilevel phenomena in the field of biology and is general enough to be extended to other charged biomolecules at a subcellular level. Further exploration in this area could lead to new biological tool development that may augment current genomics methods.
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Affiliation(s)
- R P Oates
- Rhodium Scientific, LLC, Houston, Texas, USA
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24
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Serdyukov DS, Goryachkovskaya TN, Mescheryakova IA, Bannikova SV, Kuznetsov SA, Cherkasova OP, Popik VM, Peltek SE. Study on the effects of terahertz radiation on gene networks of Escherichia coli by means of fluorescent biosensors. BIOMEDICAL OPTICS EXPRESS 2020; 11:5258-5273. [PMID: 33014613 PMCID: PMC7510871 DOI: 10.1364/boe.400432] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 07/29/2020] [Accepted: 07/30/2020] [Indexed: 05/03/2023]
Abstract
Three novel fluorescent biosensors sensitive to terahertz (THz) radiation were developed via transformation of Escherichia coli (E. coli) cells with plasmids, in which a promotor of genes matA, safA, or chbB controls the expression of a fluorescent protein. The biosensors were exposed to THz radiation from two sources: a high-intensity pulsed short-wave free electron laser and a low-intensity continuous long-wave IMPATT-diode-based device. The threshold and dynamics of fluorescence were found to depend on radiation parameters and exposure time. Heat shock or chemical stress yielded the absence of fluorescence induction. The biosensors are evaluated to be suitable for studying influence of THz radiation on the activity of gene networks related with considered gene promoters.
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Affiliation(s)
- Danil S. Serdyukov
- Laboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Kurchatov Genomics Center of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, 15B Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Tatiana N. Goryachkovskaya
- Laboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Kurchatov Genomics Center of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Irina A. Mescheryakova
- Laboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Kurchatov Genomics Center of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Svetlana V. Bannikova
- Laboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Kurchatov Genomics Center of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Sergei A. Kuznetsov
- Physics Department, Novosibirsk State University, 2 Pirogov Street, Novosibirsk 630090, Russia
- Technological Design Institute of Applied Microelectronics, Rzhanov Institute of Semiconductor Physics of the Siberian Branch of the Russian Academy of Sciences, 2/1 Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Olga P. Cherkasova
- Institute of Laser Physics of the Siberian Branch of the Russian Academy of Sciences, 15B Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Vasiliy M. Popik
- Budker Institute of Nuclear Physics of the Siberian Branch of the Russian Academy of Sciences, 11 Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - Sergey E. Peltek
- Laboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
- Kurchatov Genomics Center of Federal Research Center Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 10 Lavrentiev Avenue, Novosibirsk 630090, Russia
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25
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Yamazaki S, Harata M, Ueno Y, Tsubouchi M, Konagaya K, Ogawa Y, Isoyama G, Otani C, Hoshina H. Propagation of THz irradiation energy through aqueous layers: Demolition of actin filaments in living cells. Sci Rep 2020; 10:9008. [PMID: 32488073 PMCID: PMC7265563 DOI: 10.1038/s41598-020-65955-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Accepted: 05/13/2020] [Indexed: 11/17/2022] Open
Abstract
The effect of terahertz (THz) radiation on deep tissues of human body has been considered negligible due to strong absorption by water molecules. However, we observed that the energy of THz pulses transmits a millimeter thick in the aqueous solution, possibly as a shockwave, and demolishes actin filaments. Collapse of actin filament induced by THz irradiation was also observed in the living cells under an aqueous medium. We also confirmed that the viability of the cell was not affected under the exposure of THz pulses. The potential of THz waves as an invasive method to alter protein structure in the living cells is demonstrated.
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Affiliation(s)
- Shota Yamazaki
- RIKEN, Center for Advanced Photonics, 519-1399 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi, 980-0845, Japan.
| | - Masahiko Harata
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, 468-1 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi, 980-0845, Japan
| | - Yuya Ueno
- Laboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, 468-1 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi, 980-0845, Japan
| | - Masaaki Tsubouchi
- Kansai Photon Science Institute, National Institutes for Quantum and Radiological Science and Technology, Kyoto, 619-0215, Japan
| | - Keiji Konagaya
- Department of Physics, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Yuichi Ogawa
- Department of Physics, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto, 606-8502, Japan
| | - Goro Isoyama
- Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
| | - Chiko Otani
- RIKEN, Center for Advanced Photonics, 519-1399 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi, 980-0845, Japan
| | - Hiromichi Hoshina
- RIKEN, Center for Advanced Photonics, 519-1399 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi, 980-0845, Japan.
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26
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Yu L, Hao L, Meiqiong T, Jiaoqi H, Wei L, Jinying D, Xueping C, Weiling F, Yang Z. The medical application of terahertz technology in non-invasive detection of cells and tissues: opportunities and challenges. RSC Adv 2019; 9:9354-9363. [PMID: 35520739 PMCID: PMC9062338 DOI: 10.1039/c8ra10605c] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2018] [Accepted: 03/18/2019] [Indexed: 12/24/2022] Open
Abstract
Terahertz (THz = 1012 Hz) spectroscopy has shown great potential in biomedical research due to its unique features, such as the non-invasive and label-free identification of living cells and medical imaging. In this review, we summarized the advantages and progresses achieved in THz spectroscopy technology for blood cell detection, cancer cell characterization, bacterial identification and biological tissue discrimination, further introducing THz imaging systems and its progress in tissue imaging. We also highlighted the biological effects of THz radiation during its biological applications and the existing challenges and strategies to accelerate future clinical applications. The future prospects for THz spectroscopy will focus on developing rapid, label-free, and convenient biosensors for point-of-care tests and THz in vivo imaging.
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Affiliation(s)
- Liu Yu
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Liu Hao
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
- Department of Laboratory Medicine, The Second Hospital Affiliated to Dalian Medical University Dalian 116023 China
| | - Tang Meiqiong
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Huang Jiaoqi
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Liu Wei
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Dong Jinying
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Chen Xueping
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Fu Weiling
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
| | - Zhang Yang
- Department of Laboratory Medicine, Southwest Hospital, Third Military Medical University (Army Medical University) Chongqing 400038 China
- Department of Laboratory Medicine, Chongqing General Hospital China
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27
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Greschner AA, Ropagnol X, Kort M, Zuberi N, Perreault J, Razzari L, Ozaki T, Gauthier MA. Room-Temperature and Selective Triggering of Supramolecular DNA Assembly/Disassembly by Nonionizing Radiation. J Am Chem Soc 2019; 141:3456-3469. [PMID: 30707028 DOI: 10.1021/jacs.8b10355] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Recent observations have suggested that nonionizing radiation in the microwave and terahertz (THz; far-infrared) regimes could have an effect on double-stranded DNA (dsDNA). These observations are of significance owing to the omnipresence of microwave emitters in our daily lives (e.g., food preparation, telecommunication, and wireless Internet) and the increasing prevalence of THz emitters for imaging (e.g., concealed weapon detection in airports, skin cancer screenings) and communication technologies. By examining multiple DNA nanostructures as well as two plasmid DNAs, microwaves were shown to promote the repair and assembly of DNA nanostructures and single-stranded regions of plasmid DNA, while intense THz pulses had the opposite effect (in particular, for short dsDNA). Both effects occurred at room temperature within minutes, showed a DNA length dependence, and did not affect the chemical integrity of the DNA. Intriguingly, the function of six proteins (enzymes and antibodies) was not affected by exposure to either form of radiation under the conditions examined. This particular detail was exploited to assemble a fully functional hybrid DNA-protein nanostructure in a bottom-up manner. This study therefore provides entirely new perspectives for the effects, on the molecular level, of nonionizing radiation on biomolecules. Moreover, the proposed structure-activity relationships could be exploited in the field of DNA nanotechnology, which paves the way for designing a new range of functional DNA nanomaterials that are currently inaccessible to state-of-the-art assembly protocols.
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Affiliation(s)
- Andrea A Greschner
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
| | - Xavier Ropagnol
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
| | - Mohamed Kort
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada.,Université Pierre et Marie Curie (UPMC) , 4 place Jussieu 75252 Paris cedex 05, France
| | - Nabilah Zuberi
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
| | - Jonathan Perreault
- Institut National de la Recherche Scientifique (INRS), Institut Armand Frappier , Laval , Qc H7V 1B7 , Canada
| | - Luca Razzari
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
| | - Tsuneyuki Ozaki
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
| | - Marc A Gauthier
- Institut National de la Recherche Scientifique (INRS), EMT Research Center , Varennes , Qc J3X 1S2 , Canada
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28
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Wei L, Yu L, Jiaoqi H, Guorong H, Yang Z, Weiling F. Application of terahertz spectroscopy in biomolecule detection. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.flm.2019.05.001] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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29
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Sensale S, Peng Z, Chang HC. Acceleration of DNA melting kinetics using alternating electric fields. J Chem Phys 2018; 149:085102. [PMID: 30193482 DOI: 10.1063/1.5039887] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
We verify both theoretically and by simulation that an AC electric field, with a frequency much higher than the dissociation rate, can significantly accelerate the dissociation rate of biological molecules under isothermal conditions. The cumulative effect of the AC field is shown to break a key bottleneck by reducing the entropy (and increasing the free energy of the local minimum) via the alignment of the molecular dipole with the field. For frequencies below a resonant frequency which corresponds to the inverse Debye dipole relaxation time, the dissociation rate can be accelerated by a factor that scales as ω(ϵ'(ω)-1)E02 , where ω is the field frequency, E0 is the field amplitude, and ϵ'(ω) is the frequency-dependent real permittivity of the molecule. At large amplitudes, we find that the accelerated melting rate becomes universal, independent of duplex size and sequence, which is in drastic contrast to Ohmic thermal melting. We confirm our theory with isothermal all-atomic molecular dynamics simulation of short DNA duplexes with known melting rates, demonstrating several orders in enhancement with realistic fields.
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Affiliation(s)
- Sebastian Sensale
- Department of Aerospace and Mechanical Engineering, University of Notre Dame, Notre Dame, Indiana 46556-5637, USA
| | - Zhangli Peng
- Department of Aerospace and Mechanical Engineering, University of Notre Dame, Notre Dame, Indiana 46556-5637, USA
| | - Hsueh-Chia Chang
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556-5637, USA
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30
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Brovarets' OO, Tsiupa KS, Hovorun DM. Surprising Conformers of the Biologically Important A·T DNA Base Pairs: QM/QTAIM Proofs. Front Chem 2018; 6:8. [PMID: 29536003 PMCID: PMC5835050 DOI: 10.3389/fchem.2018.00008] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Accepted: 01/11/2018] [Indexed: 11/22/2022] Open
Abstract
For the first time novel high-energy conformers-A·T(wWC) (5.36), A·T(wrWC) (5.97), A·T(wH) (5.78), and A·T(wrH) (ΔG = 5.82 kcal·mol-1) (See Graphical Abstract) were revealed for each of the four biologically important A·T DNA base pairs - Watson-Crick A·T(WC), reverse Watson-Crick A·T(rWC), Hoogsteen A·T(H) and reverse Hoogsteen A·T(rH) at the MP2/aug-cc-pVDZ//B3LYP/6-311++G(d,p) level of quantum-mechanical theory in the continuum with ε = 4 under normal conditions. Each of these conformers possesses substantially non-planar wobble (w) structure and is stabilized by the participation of the two anti-parallel N6H/N6H'…O4/O2 and N3H…N6 H-bonds, involving the pyramidalized amino group of the A DNA base as an acceptor and a donor of the H-bonding. The transition states - TSA·T(WC)↔A·T(wWC), TSA·T(rWC)↔A·T(wrWC), TSA·T(H)↔A·T(wH), and TSA·T(rH)↔A·T(wrH), controlling the dipole-active transformations of the conformers from the main plane-symmetric state into the high-energy, significantly non-planar state and vice versa, were localized. They also possess wobble structures similarly to the high-energy conformers and are stabilized by the participation of the N6H/N6H'…O4/O2 and N3H…N6 H-bonds. Discovered conformers of the A·T DNA base pairs are dynamically stable short-lived structures [lifetime τ = (1.4-3.9) ps]. Their possible biological significance and future perspectives have been briefly discussed.
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Affiliation(s)
- Ol'ha O. Brovarets'
- Department of Molecular and Quantum Biophysics, Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- Department of Molecular Biotechnology and Bioinformatics, Institute of High Technologies, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
| | - Kostiantyn S. Tsiupa
- Department of Molecular and Quantum Biophysics, Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, Kyiv, Ukraine
| | - Dmytro M. Hovorun
- Department of Molecular and Quantum Biophysics, Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- Department of Molecular Biotechnology and Bioinformatics, Institute of High Technologies, Taras Shevchenko National University of Kyiv, Kyiv, Ukraine
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31
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Tang M, Zhang M, Yan S, Xia L, Yang Z, Du C, Cui HL, Wei D. Detection of DNA oligonucleotides with base mutations by terahertz spectroscopy and microstructures. PLoS One 2018; 13:e0191515. [PMID: 29364930 PMCID: PMC5783420 DOI: 10.1371/journal.pone.0191515] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Accepted: 01/05/2018] [Indexed: 11/21/2022] Open
Abstract
DNA oligonucleotides with a 5-base mutation at the 3'-terminus were investigated by terahertz (THz) spectroscopy in a marker-free manner. The four single-stranded oligonucleotides with 17nt have been detected with specificity on a microfluidic chip, and corroborated by spectral measurements with split-ring resonators. The number of hydrogen bonds formed between the oligonucleotide and its surrounding water molecules, deemed a key contribution to the THz absorption of biological solutions, was explored by molecular dynamics simulations to explain the experimental findings. Our work underlies the feasibility of THz spectroscopy combined with microstructures for marker-free detection of DNA, which may form the basis of a prospective diagnostic tool for studying genic mutation.
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Affiliation(s)
- Mingjie Tang
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Mingkun Zhang
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Shihan Yan
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Liangping Xia
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Zhongbo Yang
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Chunlei Du
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
| | - Hong-Liang Cui
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
- College of Instrumentation Science and Electrical Engineering, Jilin University, Changchun, Jilin, China
| | - Dongshan Wei
- Chongqing Key laboratory of Multi-Scale manufacturing Technology, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, China
- * E-mail:
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Romanenko S, Begley R, Harvey AR, Hool L, Wallace VP. The interaction between electromagnetic fields at megahertz, gigahertz and terahertz frequencies with cells, tissues and organisms: risks and potential. J R Soc Interface 2017; 14:20170585. [PMID: 29212756 PMCID: PMC5746568 DOI: 10.1098/rsif.2017.0585] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 11/14/2017] [Indexed: 12/18/2022] Open
Abstract
Since regular radio broadcasts started in the 1920s, the exposure to human-made electromagnetic fields has steadily increased. These days we are not only exposed to radio waves but also other frequencies from a variety of sources, mainly from communication and security devices. Considering that nearly all biological systems interact with electromagnetic fields, understanding the affects is essential for safety and technological progress. This paper systematically reviews the role and effects of static and pulsed radio frequencies (100-109 Hz), millimetre waves (MMWs) or gigahertz (109-1011 Hz), and terahertz (1011-1013 Hz) on various biomolecules, cells and tissues. Electromagnetic fields have been shown to affect the activity in cell membranes (sodium versus potassium ion conductivities) and non-selective channels, transmembrane potentials and even the cell cycle. Particular attention is given to millimetre and terahertz radiation due to their increasing utilization and, hence, increasing human exposure. MMWs are known to alter active transport across cell membranes, and it has been reported that terahertz radiation may interfere with DNA and cause genomic instabilities. These and other phenomena are discussed along with the discrepancies and controversies from published studies.
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Affiliation(s)
- Sergii Romanenko
- School of Physics, The University of Western Australia, Perth, Western Australia, Australia
| | - Ryan Begley
- School of Physics, The University of Western Australia, Perth, Western Australia, Australia
| | - Alan R Harvey
- School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia
- Perron Institute for Neurological and Translational Science, Perth, Western Australia, Australia
| | - Livia Hool
- School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia
- Victor Chang Cardiac Research Institute, Darlinghurst, New South Wales, Australia
| | - Vincent P Wallace
- School of Physics, The University of Western Australia, Perth, Western Australia, Australia
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Biomedical Applications of Terahertz Spectroscopy and Imaging. Trends Biotechnol 2017; 34:810-824. [PMID: 27207226 DOI: 10.1016/j.tibtech.2016.04.008] [Citation(s) in RCA: 242] [Impact Index Per Article: 34.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2016] [Revised: 04/08/2016] [Accepted: 04/14/2016] [Indexed: 12/16/2022]
Abstract
Terahertz (THz=10(12)Hz) radiation has attracted wide attention for its unprecedented sensing ability and its noninvasive and nonionizing properties. Tremendous strides in THz instrumentation have prompted impressive breakthroughs in THz biomedical research. Here, we review the current state of THz spectroscopy and imaging in various biomedical applications ranging from biomolecules, including DNA/RNA, amino acids/peptides, proteins, and carbohydrates, to cells and tissues. We also address the potential biological effects of THz radiation during its biological applications and propose future prospects for this cutting-edge technology.
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Alexandrov LB, Rasmussen KØ, Bishop AR, Alexandrov BS. Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization. Sci Rep 2017; 7:9731. [PMID: 28851939 PMCID: PMC5575098 DOI: 10.1038/s41598-017-09537-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2016] [Accepted: 07/27/2017] [Indexed: 12/11/2022] Open
Abstract
The innate flexibility of a DNA sequence is quantified by the Jacobson-Stockmayer's J-factor, which measures the propensity for DNA loop formation. Recent studies of ultra-short DNA sequences revealed a discrepancy of up to six orders of magnitude between experimentally measured and theoretically predicted J-factors. These large differences suggest that, in addition to the elastic moduli of the double helix, other factors contribute to loop formation. Here, we develop a new theoretical model that explores how coherent delocalized phonon-like modes in DNA provide single-stranded "flexible hinges" to assist in loop formation. We combine the Czapla-Swigon-Olson structural model of DNA with our extended Peyrard-Bishop-Dauxois model and, without changing any of the parameters of the two models, apply this new computational framework to 86 experimentally characterized DNA sequences. Our results demonstrate that the new computational framework can predict J-factors within an order of magnitude of experimental measurements for most ultra-short DNA sequences, while continuing to accurately describe the J-factors of longer sequences. Further, we demonstrate that our computational framework can be used to describe the cyclization of DNA sequences that contain a base pair mismatch. Overall, our results support the conclusion that coherent delocalized phonon-like modes play an important role in DNA cyclization.
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Affiliation(s)
- Ludmil B Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87545, United States of America
- University of New Mexico Comprehensive Cancer Center, Albuquerque, NM, 87102, USA
| | - Kim Ø Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87545, United States of America
| | - Alan R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87545, United States of America
| | - Boian S Alexandrov
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, 87545, United States of America.
- University of New Mexico Comprehensive Cancer Center, Albuquerque, NM, 87102, USA.
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González-Jiménez M, Ramakrishnan G, Harwood T, Lapthorn AJ, Kelly SM, Ellis EM, Wynne K. Observation of coherent delocalized phonon-like modes in DNA under physiological conditions. Nat Commun 2016; 7:11799. [PMID: 27248361 PMCID: PMC4895446 DOI: 10.1038/ncomms11799] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 04/28/2016] [Indexed: 01/10/2023] Open
Abstract
Underdamped terahertz-frequency delocalized phonon-like modes have long been suggested to play a role in the biological function of DNA. Such phonon modes involve the collective motion of many atoms and are prerequisite to understanding the molecular nature of macroscopic conformational changes and related biochemical phenomena. Initial predictions were based on simple theoretical models of DNA. However, such models do not take into account strong interactions with the surrounding water, which is likely to cause phonon modes to be heavily damped and localized. Here we apply state-of-the-art femtosecond optical Kerr effect spectroscopy, which is currently the only technique capable of taking low-frequency (GHz to THz) vibrational spectra in solution. We are able to demonstrate that phonon modes involving the hydrogen bond network between the strands exist in DNA at physiologically relevant conditions. In addition, the dynamics of the solvating water molecules is slowed down by about a factor of 20 compared with the bulk.
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Affiliation(s)
| | | | - Thomas Harwood
- Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G4 0RE, UK
| | - Adrian J. Lapthorn
- School of Chemistry, WestCHEM, University of Glasgow, Glasgow G12 8QQ, UK
| | - Sharon M. Kelly
- Institute of Molecular Cell and Systems Biology, University of Glasgow, Glasgow G12 8QQ, UK
| | - Elizabeth M. Ellis
- Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow G4 0RE, UK
| | - Klaas Wynne
- School of Chemistry, WestCHEM, University of Glasgow, Glasgow G12 8QQ, UK
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Sergeeva S, Demidova E, Sinitsyna O, Goryachkovskaya T, Bryanskaya A, Semenov A, Meshcheryakova I, Dianov G, Popik V, Peltek S. 2.3THz radiation: Absence of genotoxicity/mutagenicity in Escherichia coli and Salmonella typhimurium. MUTATION RESEARCH-GENETIC TOXICOLOGY AND ENVIRONMENTAL MUTAGENESIS 2016; 803-804:34-8. [PMID: 27265378 DOI: 10.1016/j.mrgentox.2016.05.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Revised: 05/06/2016] [Accepted: 05/12/2016] [Indexed: 11/18/2022]
Abstract
The mutagenicity and genotoxicity in bacteria of 2.3THz radiation (THz) produced by a free-electron laser (NovoFEL) were evaluated; exposures were 5, 10, or 15min at average power 1.4W/cm(2). Two Ames mutagenicity test strains of Salmonella typhimurium, TA98 and TA102, were used. For the genotoxicity test, we measured SOS induction in Escherichia coli PQ37. No significant differences were found between exposed and control cells, indicating that THz radiation is neither mutagenic nor genotoxic under these conditions. Nevertheless, a small increase in total cell number of S. typhimurium after 15min exposure, and an increase in β-galactosidase and alkaline phosphatase activities in E.coli PQ37, were observed, indicating some effect of THz radiation on cell metabolism. We also examined the combined effect of 4-NQO (8μM; positive control) and THz exposure (5min) on genotoxicity in E.coli PQ37. Unexpectedly, THz radiation decreased 4-NQO genotoxicity.
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Affiliation(s)
- Svetlana Sergeeva
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia.
| | - Elisaveta Demidova
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
| | - Olga Sinitsyna
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
| | - Tatiana Goryachkovskaya
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
| | - Alla Bryanskaya
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
| | - Artem Semenov
- Budker Institute of Nucleic Physics SB RAS, Prospekt Lavrentyeva 11, Novosibirsk, 630090, Russia
| | - Irina Meshcheryakova
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
| | - Grigory Dianov
- Oxford Institute for Radiation Oncology, University of Oxford, Department of Oncology, Roosevelt Drive, OX37DQ Oxford, UK
| | - Vasiliy Popik
- Budker Institute of Nucleic Physics SB RAS, Prospekt Lavrentyeva 11, Novosibirsk, 630090, Russia
| | - Sergey Peltek
- Institute of Cytology and Genetics RAS, Prospekt Lavrentyeva 10, Novosibirsk, 630090, Russia
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Maria OM, Kumala S, Heravi M, Syme A, Eliopoulos N, Muanza T. Adipose mesenchymal stromal cells response to ionizing radiation. Cytotherapy 2016; 18:384-401. [PMID: 26780866 DOI: 10.1016/j.jcyt.2015.12.001] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
BACKGROUND AIMS This study evaluates the biological response of adipose tissue-derived mesenchymal stromal cells (aMSCs) to ionizing radiation (IR). METHODS Irradiated BALB/c mice aMSCs were characterized for functionality and phenotype. The clonogenic capacity of irradiated aMSCs was assessed and compared with those of metastatic breast cancer cell line (4T1) and normal mouse fibroblasts (NIH3T3-wt). We investigated the IR-induced DNA damage response, apoptosis, changes in cell cycle (CC) dynamics and protein and gene expression. RESULTS Irradiated and non-irradiated aMSCs were able to differentiate into adipocytes, chondrocytes and osteocytes with no significant difference. Irradiated aMSCs maintained the expression of mesenchymal stromal cells (MSCs) surface antigens and, as expected, were negative for hematopoietic stem cells (HSCs) surface antigens when tested up to 7 days after IR for all irradiation doses with no significant difference. Clonogenically, irradiated aMSCs had higher relative survival fraction and plating efficiency than 4T1 and NIH3T3-wt. Irradiated aMSCs expressed higher □H2AX and significantly showed faster and more time-efficient IR-induced DNA damage response evident by up-regulated DNA-PKcs and RAD51. Two hours after IR, most of aMSCs DNA damage/repair-related genes showed up-regulation that disappeared within 6 h after IR. Irradiated aMSCs showed a significant rise and an earlier peak of p-ATM-dependent and -independent (p84/5E10-mediated) G2/M CC arrest compared with 4T1 and NIH3T3-wt. CONCLUSIONS After IR exposure, aMSCs showed a robust and time-efficient radiation-induced DNA damage repair response, stable phenotypical characteristics and multi-lineage differentiation potential, suggesting they may be reliable candidates for cell therapy in radiation oncology regenerative medicine.
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Affiliation(s)
- Osama Muhammad Maria
- Experimental Medicine Department, Jewish General Hospital, Montreal, Canada; Surgery Department, Faculty of Medicine, Jewish General Hospital, Montreal, Canada; Radiation Oncology Department, Jewish General Hospital, Montreal, Canada
| | - Slawomir Kumala
- Radiation Oncology Department, Jewish General Hospital, Montreal, Canada; Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, Canada; Oncology Department, McGill University, Montreal, Canada
| | - Mitra Heravi
- Radiation Oncology Department, Jewish General Hospital, Montreal, Canada; Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, Canada; Human Genetics Department, McGill University, Montreal, Canada
| | - Alasdair Syme
- Radiation Oncology Department, Jewish General Hospital, Montreal, Canada; Oncology Department, McGill University, Montreal, Canada; Medical Physics Unit, Jewish General Hospital, Montreal, Canada
| | - Nicoletta Eliopoulos
- Surgery Department, Faculty of Medicine, Jewish General Hospital, Montreal, Canada; Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, Canada
| | - Thierry Muanza
- Experimental Medicine Department, Jewish General Hospital, Montreal, Canada; Radiation Oncology Department, Jewish General Hospital, Montreal, Canada; Lady Davis Institute for Medical Research, Jewish General Hospital, Montreal, Canada; Oncology Department, McGill University, Montreal, Canada.
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38
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Low Reactive Level Laser Therapy for Mesenchymal Stromal Cells Therapies. Stem Cells Int 2015; 2015:974864. [PMID: 26273309 PMCID: PMC4529981 DOI: 10.1155/2015/974864] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Accepted: 03/14/2015] [Indexed: 12/24/2022] Open
Abstract
Low reactive level laser therapy (LLLT) is mainly focused on the activation of intracellular or extracellular chromophore and the initiation of cellular signaling by using low power lasers. Over the past forty years, it was realized that the laser therapy had the potential to improve wound healing and reduce pain and inflammation. In recent years, the term LLLT has become widely recognized in the field of regenerative medicine. In this review, we will describe the mechanisms of action of LLLT at a cellular level and introduce the application to mesenchymal stem cells and mesenchymal stromal cells (MSCs) therapies. Finally, our recent research results that LLLT enhanced the MSCs differentiation to osteoblast will also be described.
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39
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Weisman NY, Fedorov VI, Nemova EF. Terahertz radiation improves adaptation characteristics in Drosophila melanogaster. CONTEMP PROBL ECOL+ 2015. [DOI: 10.1134/s199542551502016x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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40
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Tripathi SR, Miyata E, Ishai PB, Kawase K. Morphology of human sweat ducts observed by optical coherence tomography and their frequency of resonance in the terahertz frequency region. Sci Rep 2015; 5:9071. [PMID: 25766116 PMCID: PMC4357862 DOI: 10.1038/srep09071] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Accepted: 02/17/2015] [Indexed: 11/09/2022] Open
Abstract
It is crucial to understand the various biological effects induced by terahertz (THz) electromagnetic waves with the rapid development of electronic and photonic devices operating in the THz frequency region. The presence of sweat glands plays an important role in THz wave interactions with human skin. We investigated the morphological features of sweat ducts using optical coherence tomography (OCT) to further understand such phenomena. We observed remarkable features of the ducts, such as their clear helical structure. The intersubject and intrasubject variations in the diameter of sweat ducts were considerably smaller than the variations in other structural parameters, such as length and number of turns. Based on the sweat duct dimensions and THz dielectric properties of skin measured using terahertz time-domain spectroscopy (THz-TDS), we calculated the resonating frequency of the sweat duct under the assumption of it functioning as a helical antenna. Here, we show that the resonance frequency in the axial mode of operation lies in the THz wave region with a centre frequency of 0.44 ± 0.07 THz. We expect that these findings will further our understanding of the various health consequences of the interaction of THz waves with human beings.
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Affiliation(s)
| | - Eisuke Miyata
- Nagoya University, Furo-cho, Chikusa Ku, Nagoya 464-8603, Japan
| | - Paul Ben Ishai
- The Hebrew University of Jerusalem, Givat Ram, Jerusalem 91904, Israel
| | - Kodo Kawase
- Nagoya University, Furo-cho, Chikusa Ku, Nagoya 464-8603, Japan
- RIKEN, 519-1399 Aramakiaoba, Aoba, Sendai 980-0845, Japan
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41
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Traverso JJ, Manoranjan VS, Bishop AR, Rasmussen KØ, Voulgarakis NK. Allostery through protein-induced DNA bubbles. Sci Rep 2015; 5:9037. [PMID: 25762409 PMCID: PMC4356955 DOI: 10.1038/srep09037] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2014] [Accepted: 02/13/2015] [Indexed: 01/03/2023] Open
Abstract
Allostery through DNA is increasingly recognized as an important modulator of DNA functions. Here, we show that the coalescence of protein-induced DNA bubbles can mediate allosteric interactions that drive protein aggregation. We propose that such allostery may regulate DNA's flexibility and the assembly of the transcription machinery. Mitochondrial transcription factor A (TFAM), a dual-function protein involved in mitochondrial DNA (mtDNA) packaging and transcription initiation, is an ideal candidate to test such a hypothesis owing to its ability to locally unwind the double helix. Numerical simulations demonstrate that the coalescence of TFAM-induced bubbles can explain experimentally observed TFAM oligomerization. The resulting melted DNA segment, approximately 10 base pairs long, around the joints of the oligomers act as flexible hinges, which explains the efficiency of TFAM in compacting DNA. Since mitochondrial polymerase (mitoRNAP) is involved in melting the transcription bubble, TFAM may use the same allosteric interaction to both recruit mitoRNAP and initiate transcription.
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Affiliation(s)
- Joseph J Traverso
- 1] Department of Mathematics, Washington State University, Richland, WA 99354, USA [2] Department of Mechanical Engineering, Washington State University, Richland, WA 99354, USA
| | | | - A R Bishop
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA
| | - Kim Ø Rasmussen
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA
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Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Sci Rep 2015; 5:7749. [PMID: 25582954 PMCID: PMC4291560 DOI: 10.1038/srep07749] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Accepted: 12/08/2014] [Indexed: 02/07/2023] Open
Abstract
Terahertz (THz) radiation was proposed recently for use in various applications, including medical imaging and security scanners. However, there are concerns regarding the possible biological effects of non-ionising electromagnetic radiation in the THz range on cells. Human embryonic stem cells (hESCs) are extremely sensitive to environmental stimuli, and we therefore utilised this cell model to investigate the non-thermal effects of THz irradiation. We studied DNA damage and transcriptome responses in hESCs exposed to narrow-band THz radiation (2.3 THz) under strict temperature control. The transcription of approximately 1% of genes was subtly increased following THz irradiation. Functional annotation enrichment analysis of differentially expressed genes revealed 15 functional classes, which were mostly related to mitochondria. Terahertz irradiation did not induce the formation of γH2AX foci or structural chromosomal aberrations in hESCs. We did not observe any effect on the mitotic index or morphology of the hESCs following THz exposure.
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Affiliation(s)
- A. N. Bogomazova
- Vavilov Institute of General Genetics RAS, Moscow, Russia
- Skoltech Center for Stem Cell Research, Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region, Russia
| | - E. M. Vassina
- Vavilov Institute of General Genetics RAS, Moscow, Russia
- Skoltech Center for Stem Cell Research, Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region, Russia
| | | | - V. M. Popik
- Budker Institute of Nucleic Physics SB RAS, Novosibirsk, Russia
| | | | | | - M. A. Lagarkova
- Vavilov Institute of General Genetics RAS, Moscow, Russia
- Scientific Research Institute of Physical-Chemical Medicine, Moscow, Russia
- Skoltech Center for Stem Cell Research, Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region, Russia
| | - S. L. Kiselev
- Vavilov Institute of General Genetics RAS, Moscow, Russia
- Skoltech Center for Stem Cell Research, Skolkovo Institute of Science and Technology, Skolkovo, Moscow Region, Russia
| | - S. E. Peltek
- Institute of Cytology and Genetics RAS, Novosibirsk, Russia
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Fedorov VI, Weisman NY, Nemova EF, Nikolaev NA. Terahertz radiation influence on stressed drosophila life span. Biophysics (Nagoya-shi) 2014. [DOI: 10.1134/s0006350914030063] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Intense THz pulses down-regulate genes associated with skin cancer and psoriasis: a new therapeutic avenue? Sci Rep 2014; 3:2363. [PMID: 23917523 PMCID: PMC3734481 DOI: 10.1038/srep02363] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Accepted: 07/11/2013] [Indexed: 01/23/2023] Open
Abstract
Terahertz (THz) radiation lies between the infrared and microwave regions of the electromagnetic spectrum and is non-ionizing. We show that exposure of artificial human skin tissue to intense, picosecond-duration THz pulses affects expression levels of numerous genes associated with non-melanoma skin cancers, psoriasis and atopic dermatitis. Genes affected by intense THz pulses include nearly half of the epidermal differentiation complex (EDC) members. EDC genes, which are mapped to the chromosomal human region 1q21, encode for proteins that partake in epidermal differentiation and are often overexpressed in conditions such as psoriasis and skin cancer. In nearly all the genes differentially expressed by exposure to intense THz pulses, the induced changes in transcription levels are opposite to disease-related changes. The ability of intense THz pulses to cause concerted favorable changes in the expression of multiple genes implicated in inflammatory skin diseases and skin cancers suggests potential therapeutic applications of intense THz pulses.
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45
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Kim KT, Park J, Jo SJ, Jung S, Kwon OS, Gallerano GP, Park WY, Park GS. High-power femtosecond-terahertz pulse induces a wound response in mouse skin. Sci Rep 2014; 3:2296. [PMID: 23907528 PMCID: PMC3731731 DOI: 10.1038/srep02296] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Accepted: 07/05/2013] [Indexed: 11/09/2022] Open
Abstract
Terahertz (THz) technology has emerged for biomedical applications such as scanning, molecular spectroscopy, and medical imaging. Although a thorough assessment to predict potential concerns has to precede before practical utilization of THz source, the biological effect of THz radiation is not yet fully understood with scant related investigations. Here, we applied a femtosecond-terahertz (fs-THz) pulse to mouse skin to evaluate non-thermal effects of THz radiation. Analysis of the genome-wide expression profile in fs-THz-irradiated skin indicated that wound responses were predominantly mediated by transforming growth factor-beta (TGF-β) signaling pathways. We validated NFκB1- and Smad3/4-mediated transcriptional activation in fs-THz-irradiated skin by chromatin immunoprecipitation assay. Repeated fs-THz radiation delayed the closure of mouse skin punch wounds due to up-regulation of TGF-β. These findings suggest that fs-THz radiation initiate a wound-like signal in skin with increased expression of TGF-β and activation of its downstream target genes, which perturbs the wound healing process in vivo.
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Affiliation(s)
- Kyu-Tae Kim
- Departments of Biomedical Sciences, College of Medicine, Seoul National University, Seoul 110-799, Korea
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Fluctuations in the DNA double helix: A critical review. Phys Life Rev 2014; 11:153-70. [PMID: 24560595 DOI: 10.1016/j.plrev.2014.01.005] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 12/27/2013] [Accepted: 12/30/2013] [Indexed: 12/22/2022]
Abstract
A critical overview of the extensive literature on fluctuations in the DNA double helix is presented. Both theory and experiment are comprehensively reviewed and analyzed. Fluctuations, which open up the DNA double helix making bases accessible for hydrogen exchange and chemical modification, are the main focus of the review. Theoretical descriptions of the DNA fluctuations are discussed with special emphasis on most popular among them: the nonlinear-dynamic Peyrard-Bishop-Dauxois (PBD) model and the empirical two-state (or helix-coil) model. The experimental data on the issue are comprehensibly overviewed in the historical retrospective with main emphasis on the hydrogen exchange data and formaldehyde kinetics. The theoretical descriptions are critically evaluated from the viewpoint of their applicability to describe DNA in water environment and from the viewpoint of agreement of their predictions with the reliable experimental data. The presented analysis makes it possible to conclude that, while the two-state model is most adequate from theoretical viewpoint and its predictions, based on an empirical parametrization, agree with experimental data very well, the PBD model is inapplicable to DNA in water from theoretical viewpoint on one hand and it makes predictions totally incompatible with reliable experimental data on the other. In particular, it is argued that any oscillation movements of nucleotides, assumed by the PBD model, are severely damped in water, that no "bubbles", which the PBD model predicts, exist in reality in linear DNA well below the melting range and the lifetime of an open state in DNA is actually 5 orders of magnitude longer than the value predicted by the PBD model.
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Zhao L, Hao YH, Peng RY. Advances in the biological effects of terahertz wave radiation. Mil Med Res 2014; 1:26. [PMID: 25722878 PMCID: PMC4340277 DOI: 10.1186/s40779-014-0026-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/15/2014] [Accepted: 11/14/2014] [Indexed: 11/29/2022] Open
Abstract
The terahertz (THz) band lies between microwave and infrared rays in wavelength and consists of non-ionizing radiation. Both domestic and foreign research institutions, including the army, have attached considerable importance to the research and development of THz technology because this radiation exhibits both photon-like and electron-like properties, which grant it considerable application value and potential. With the rapid development of THz technology and related applications, studies of the biological effects of THz radiation have become a major focus in the field of life sciences. Research in this field has only just begun, both at home and abroad. In this paper, research progress with respect to THz radiation, including its biological effects, mechanisms and methods of protection, will be reviewed.
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Affiliation(s)
- Li Zhao
- Department of Experimental Pathology, Beijing Institute of Radiation Medicine, Beijing, 100850 China
| | - Yan-Hui Hao
- Department of Experimental Pathology, Beijing Institute of Radiation Medicine, Beijing, 100850 China
| | - Rui-Yun Peng
- Department of Experimental Pathology, Beijing Institute of Radiation Medicine, Beijing, 100850 China
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Yao X, Hu Y, Cao B, Peng R, Ding J. Effects of surface molecular chirality on adhesion and differentiation of stem cells. Biomaterials 2013; 34:9001-9. [PMID: 23981354 DOI: 10.1016/j.biomaterials.2013.08.013] [Citation(s) in RCA: 97] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Accepted: 08/07/2013] [Indexed: 12/21/2022]
Abstract
Chirality is one of the most fascinating and ubiquitous cues in nature, especially in life. The effects of chiral surfaces on stem cells have, however, not yet been revealed. Herein we examined the molecular chirality effect on stem cell behaviors. Self assembly monolayers of L- or D-cysteine (Cys) were formed on a glass surface coated with gold. Mesenchymal stem cells (MSCs) derived from bone marrow of rats exhibited more adhering preference and thus less cell spreading on the L surface than on the d one at the confluent condition. More protein adsorption was observed on the L surface after immersed in cell culture medium with fetal bovine serum. After osteogenic and adipogenic co-induction at the confluent condition, a larger proportion of cells became osteoblasts on the d surface, while the adipogenic fraction on the L surface was found to be higher than on the D surface. In order to interpret how this chirality effect worked, we fabricated Cys microislands of two sizes on the non-fouling poly(ethylene glycol) hydrogel to pre-define the spreading areas of single cells. Then the differentiation extents did not exhibit a significant difference between L and D surfaces under a given area of microislands, yet very significant differences of osteogenesis and adipogenesis were found between different areas. So, the molecular chirality influenced stem cells, probably via favored adsorption of natural proteins on the L surface, which led to more cell adhesion; and the larger cell spreading area with higher cell tension in turn favored osteogenesis rather than adipogenesis. As a result, this study reveals the molecular chirality on material surfaces as an indirect regulator of stem cells.
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Affiliation(s)
- Xiang Yao
- State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Advanced Materials Laboratory, Fudan University, Shanghai 200433, China
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