Ammonia-oxidation as an engine to generate nitrous oxide in an intensively managed calcareous fluvo-aquic soil

Metabolic coupling between soil aerobic methanotrophs and denitrifiers in rice paddy fields

Paddy fields are hotspots of microbial denitrification, which is typically linked to the oxidation of electron donors such as methane (CH4) under anoxic and hypoxic conditions. While several anaerobic methanotrophs can facilitate denitrification intracellularly, whether and how aerobic CH4 oxidation couples with denitrification in hypoxic paddy fields remains virtually unknown. Here we combine a ~3300 km field study across main rice-producing areas of China and 13CH4-DNA-stable isotope probing (SIP) experiments to investigate the role of soil aerobic CH4 oxidation in supporting denitrification. Our results reveal positive relationships between CH4 oxidation and denitrification activities and genes across various climatic regions. Microcosm experiments confirm that CH4 and methanotroph addition promote gene expression involved in denitrification and increase nitrous oxide emissions. Moreover, 13CH4-DNA-SIP analyses identify over 70 phylotypes harboring genes associated with denitrification and assimilating 13C, which are mostly belonged to Rubrivivax, Magnetospirillum, and Bradyrhizobium. Combined analyses of 13C-metagenome-assembled genomes and 13C-metabolomics highlight the importance of intermediates such as acetate, propionate and lactate, released during aerobic CH4 oxidation, for the coupling of CH4 oxidation with denitrification. Our work identifies key microbial taxa and pathways driving coupled aerobic CH4 oxidation and denitrification, with important implications for nitrogen management and greenhouse gas regulation in agroecosystems.

AOB Nitrosospira cluster 3a.2 (D11) dominates N2O emissions in fertilised agricultural soils

Ammonia-oxidation process directly contribute to soil nitrous oxide (N2O) emissions in agricultural soils. However, taxonomy of the key nitrifiers (within ammonia oxidising bacteria (AOB), archaea (AOA) and complete ammonia oxidisers (comammox Nitrospira)) responsible for substantial N2O emissions in agricultural soils is unknown, as is their regulation by soil biotic and abiotic factors. In this study, cumulative N2O emissions, nitrification rates, abundance and community structure of nitrifiers were investigated in 16 agricultural soils from major crop production regions of China using microcosm experiments with amended nitrogen (N) supplemented or not with a nitrification inhibitor (nitrapyrin). Key nitrifier groups involved in N2O emissions were identified by comparative analyses of the different treatments, combining sequencing and random forest analyses. Soil cumulative N2O emissions significantly increased with soil pH in all agricultural soils. However, they decreased with soil organic carbon (SOC) in alkaline soils. Nitrapyrin significantly inhibited soil cumulative N2O emissions and AOB growth, with a significant inhibition of the AOB Nitrosospira cluster 3a.2 (D11) abundance. One Nitrosospira multiformis-like OTU phylotype (OTU34), which was classified within the AOB Nitrosospira cluster 3a.2 (D11), had the greatest importance on cumulative N2O emissions and its growth significantly depended on soil pH and SOC contents, with higher growth at high pH and low SOC conditions. Collectively, our results demonstrate that alkaline soils with low SOC contents have high N2O emissions, which were mainly driven by AOB Nitrosospira cluster 3a.2 (D11). Nitrapyrin can efficiently reduce nitrification-related N2O emissions by inhibiting the activity of AOB Nitrosospira cluster 3a.2 (D11). This study advances our understanding of key nitrifiers responsible for high N2O emissions in agricultural soils and their controlling factors, and provides vital knowledge for N2O emission mitigation in agricultural ecosystems.

Mitigation of N2O emission from granular organic fertilizer with alkali- and salt-resistant plant growth-promoting rhizobacteria

AIM

Organic fertilizer application significantly stimulates nitrous oxide (N2O) emissions from agricultural soils. Plant growth-promoting rhizobacteria (PGPR) strains are the core of bio-fertilizer or bio-organic fertilizer, while their beneficial effects are inhibited by environmental conditions, such as alkali and salt stress observed in organic manure or soil. This study aims to screen alkali- and salt-resistant PGPR that could mitigate N2O emission after applying strain-inoculated organic fertilizer.

METHODS AND RESULTS

Among the 29 candidate strains, 11 (7 Bacillus spp., 2 Achromobacter spp., 1 Paenibacillus sp., and 1 Pseudomonas sp.) significantly mitigated N2O emissions from the organic fertilizer after inoculation. Seven strains were alkali tolerant (pH 10) and five were salt tolerant (4% salinity) in pure culture. Seven strains were selected for further evaluation in two agricultural soils. Five of these seven strains could significantly decrease the cumulative N2O emissions from Anthrosol, while six could significantly decrease the cumulative N2O emissions from Cambisol after the inoculation into the granular organic fertilizer compared with the non-inoculated control.

CONCLUSIONS

Inoculating alkali- and salt-resistant PGPR into organic fertilizer can reduce N2O emissions from soils under microcosm conditions. Further studies are needed to investigate whether these strains will work under field conditions, under higher salinity, or at different soil pH.

In situ 15 N-N2 O site preference and O2 concentration dynamics disclose the complexity of N2 O production processes in agricultural soil

Arable soil continues to be the dominant anthropogenic source of nitrous oxide (N2 O) emissions owing to application of nitrogen (N) fertilizers and manures across the world. Using laboratory and in situ studies to elucidate the key factors controlling soil N2 O emissions remains challenging due to the potential importance of multiple complex processes. We examined soil surface N2 O fluxes in an arable soil, combined with in situ high-frequency measurements of soil matrix oxygen (O2 ) and N2 O concentrations, in situ 15 N labeling, and N2 O 15 N site preference (SP). The in situ O2 concentration and further microcosm visualized spatiotemporal distribution of O2 both suggested that O2 dynamics were the proximal determining factor to matrix N2 O concentration and fluxes due to quick O2 depletion after N fertilization. Further SP analysis and in situ 15 N labeling experiment revealed that the main source for N2 O emissions was bacterial denitrification during the hot-wet summer with lower soil O2 concentration, while nitrification or fungal denitrification contributed about 50.0% to total emissions during the cold-dry winter with higher soil O2 concentration. The robust positive correlation between O2 concentration and SP values underpinned that the O2 dynamics were the key factor to differentiate the composite processes of N2 O production in in situ structured soil. Our findings deciphered the complexity of N2 O production processes in real field conditions, and suggest that O2 dynamics rather than stimulation of functional gene abundances play a key role in controlling soil N2 O production processes in undisturbed structure soils. Our results help to develop targeted N2 O mitigation measures and to improve process models for constraining global N2 O budget.

Biochar amendments and climate warming affected nitrification associated N2O and NO production in a vegetable field

Soil nitrification driven by ammonia-oxidizing microorganisms is the most important source of nitrous oxide (N₂O) and nitric oxide (NO). Biochar amendment has been proposed as the most promising measure for combating climate warming; both have the potential to regulate the soil nitrification process. However, the comprehensive impacts of different aged biochars and warming combinations on soil nitrification-related N₂O and NO production are not well understood. Here, 1-octyne and acetylene were used to investigate the relative contributions of ammonia-oxidizing bacteria (AOB) and archaea (AOA) to potential nitrification-mediated N₂O and NO production from the fertilized vegetable soil with different aged biochar amendments and soil temperatures in microcosm incubations. Results demonstrated that AOB dominated nitrification-related N₂O and NO production across biochar additions and climate warming. Biochar amendment did not significantly influence the relative contribution of AOB and AOA to N₂O and NO production. Field-aged biochar markedly reduced N₂O and NO production via inhibiting AOB-amoA gene abundance and AOB-dependent N₂O yield while fresh- and lab-aged biochar produced negligible effects on AOB-dependent N₂O yield. Climate warming significantly increased N₂O production and AOB-dependent N₂O yield but less so on NO production. Notably, the relative contribution of AOB to N₂O production was enhanced by climate warming, whereas AOB-derived NO showed the opposite tendency. Overall, the results revealed that field-aged biochar contributed to mitigating warming-induced increases in N₂O and NO production via inhibiting AOB-amoA gene abundance and AOB-dependent N₂O yield. Our findings provided guidance for mitigating nitrogen oxide emissions in intensively managed vegetable production under the context of biochar amendments and climate warming.

Contribution of Ammonium-Induced Nitrifier Denitrification to N2O in Paddy Fields

Paddy fields are one of the most important sources of nitrous oxide (N₂O), but biogeochemical N₂O production mechanisms in the soil profile remain unclear. Our study used incubation, dual-isotope (¹⁵N-¹⁸O) labeling methods, and molecular techniques to elucidate N₂O production characteristics and mechanisms in the soil profile (0-60 cm) during summer fallow, rice cropping, and winter fallow periods. The results pointed out that biotic processes dominated N₂O production (72.2-100%) and N₂O from the tillage layer accounted for 91.0-98.5% of total N₂O in the soil profile. Heterotrophic denitrification (HD) was the main process generating N₂O, contributing between 53.4 and 96.6%, the remainder being due to ammonia oxidation pathways, which was further confirmed by metagenomics and quantitative polymerase chain reaction (qPCR) assays. Nitrifier denitrification (ND) was an important N₂O production source, contributing 0-46.6% of total N₂O production, which showed similar trends with N₂O emissions. Among physicochemical and biological factors, ammonium content and the ratio of total organic matter to nitrate were the main driving factors affecting the contribution ratios of the ammonia oxidation pathways and HD pathway, respectively. Moisture content and pH affect norC-carrying Spirochetes and thus the N₂O production rate. These findings confirm the importance of ND to N₂O production and help to elucidate the impact of anthropogenic activities, including tillage, fertilization, and irrigation, on N₂O production.

Diversity of the Hydroxylamine Oxidoreductase (HAO) Gene and Its Enzyme Active Site in Agricultural Field Soils

Nitrification is a key process in the biogeochemical nitrogen cycle and a major emission source of the greenhouse gas nitrous oxide (N2O). The periplasmic enzyme hydroxylamine oxidoreductase (HAO) is involved in the oxidation of hydroxylamine to nitric oxide in the second step of nitrification, producing N2O as a byproduct. Its three-dimensional structure demonstrates that slight differences in HAO active site residues have inhibitor effects. Therefore, a more detailed understanding of the diversity of HAO active site residues in soil microorganisms is important for the development of novel nitrification inhibitors using structure-guided drug design. However, this has not yet been examined. In the present study, we investigated hao gene diversity in beta-proteobacterial ammonia-oxidizing bacteria (β-AOB) and complete ammonia-oxidizing (comammox; Nitrospira spp.) bacteria in agricultural fields using a clone library ana-lysis. A total of 1,949 hao gene sequences revealed that hao gene diversity in β-AOB and comammox bacteria was affected by the fertilizer treatment and field type, respectively. Moreover, hao sequences showed the almost complete conservation of the six HAO active site residues in both β-AOB and comammox bacteria. The diversity of nitrifying bacteria showed similarity between hao and amoA genes. The nxrB amplicon sequence revealed the dominance of Nitrospira cluster II in tea field soils. The present study is the first to reveal hao gene diversity in agricultural soils, which will accelerate the efficient screening of HAO inhibitors and evaluations of their suppressive effects on nitrification in agricultural soils.

Combined effects of biochar and biogas slurry on soil nitrogen transformation rates and N2O emission in a subtropical poplar plantation

It has been widely accepted that biochar has a great potential of mitigating soil nitrous oxide (N₂O) emission. However, the underlying mechanism about how biochar affects nitrogen transformation and the pathways of soil N₂O production is under discussion. A ¹⁵N-tracer incubation experiment was conducted to investigate the short-term effects of biochar on soil N transformation rates and source partitioning of N₂O emissions in soils from a poplar plantation system. A two-factor experimental design was adopted using biogas digestate slurry and biochar as soil amendments. In total, there were 12 treatments, including three rates of biochar: B0 (control), B2 (80 t ha^-1), and B3 (120 t ha^-1), and four rates of biogas digestate slurry: C (0 m³ ha^-1), L (125 m³ ha^-1), M (250 m³ ha^-1), and H (375 m³ ha^-1). We observed significantly lower rates of net nitrification (N_n) and mineralization (M_n) in biochar-treated soils. The ¹⁵N tracer analysis revealed a significant decrease in gross autotrophic (O_NH4), heterotrophic nitrification (O_Nrec), and mineralization (M_Norg) rates while an increase in gross immobilization (I_NH4 and I_NO3) rates in biochar amended soils. When biogas slurry was applied, biochar only significantly reduced O_NH4 except in the moderate slurry treatment. Regardless of the slurry application, biochar consistently suppressed N₂O emission by 58-89 %, and nitrification was the dominant pathway accounting contributing >90 % to cumulative N₂O emissions. Moreover, soil cumulative N₂O emissions significantly negatively correlated with soil ammonium contents and positively with M_Norg, M_n, and N_n, showing that biochar decreased N₂O emission via a reducing effect on nitrification rates and associated N₂O emissions. Our results also highlight that application of N fertilizer greatly influence the biochar's impacts on soil N transformation rates and N₂O emission, calling for further studies on their interactions to develop mitigate options and to improve N use efficiency.

Recent trends in nitrogen cycle and eco-efficient nitrogen management strategies in aerobic rice system

Rice (Oryza sativa L.) is considered as a staple food for more than half of the global population, and sustaining productivity under a scarcity of resources is challenging to meet the future food demands of the inflating global population. The aerobic rice system can be considered as a transformational replacement for traditional rice, but the widespread adaptation of this innovative approach has been challenged due to higher losses of nitrogen (N) and reduced N-use efficiency (NUE). For normal growth and developmental processes in crop plants, N is required in higher amounts. N is a mineral nutrient and an important constituent of amino acids, nucleic acids, and many photosynthetic metabolites, and hence is essential for normal plant growth and metabolism. Excessive application of N fertilizers improves aerobic rice growth and yield, but compromises economic and environmental sustainability. Irregular and uncontrolled use of N fertilizers have elevated several environmental issues linked to higher N losses in the form of nitrous oxide (N2O), ammonia (NH3), and nitrate (NO3 -), thereby threatening environmental sustainability due to higher warming potential, ozone depletion capacities, and abilities to eutrophicate the water resources. Hence, enhancing NUE in aerobic rice has become an urgent need for the development of a sustainable production system. This article was designed to investigate the major challenge of low NUE and evaluate recent advances in pathways of the N cycle under the aerobic rice system, and thereby suggest the agronomic management approaches to improve NUE. The major objective of this review is about optimizing the application of N inputs while sustaining rice productivity and ensuring environmental safety. This review elaborates that different soil conditions significantly shift the N dynamics via changes in major pathways of the N cycle and comprehensively reviews the facts why N losses are high under the aerobic rice system, which factors hinder in attaining high NUE, and how it can become an eco-efficient production system through agronomic managements. Moreover, it explores the interactive mechanisms of how proper management of N cycle pathways can be accomplished via optimized N fertilizer amendments. Meanwhile, this study suggests several agricultural and agronomic approaches, such as site-specific N management, integrated nutrient management (INM), and incorporation of N fertilizers with enhanced use efficiency that may interactively improve the NUE and thereby plant N uptake in the aerobic rice system. Additionally, resource conservation practices, such as plant residue management, green manuring, improved genetic breeding, and precision farming, are essential to enhance NUE. Deep insights into the recent advances in the pathways of the N cycle under the aerobic rice system necessarily suggest the incorporation of the suggested agronomic adjustments to reduce N losses and enhance NUE while sustaining rice productivity and environmental safety. Future research on N dynamics is encouraged under the aerobic rice system focusing on the interactive evaluation of shifts among activities and diversity in microbial communities, NUE, and plant demands while applying N management measures, which is necessary for its widespread adaptation in face of the projected climate change and scarcity of resources.

Is Dairy Effluent an Alternative for Maize Crop Fertigation in Semiarid Regions? An Approach to Agronomic and Environmental Effects

Simple Summary

Dairy effluent can be an environmental problem if it is not properly managed. Several application technologies exist for its reuse as a source of nutrients in agricultural crops. Our study provides new information on GHG emissions after the application of dairy effluent through a subsurface drip irrigation system on a semiarid soil of the southern Pampean Region (Argentina). In addition, some edaphic properties are compared with conventional chemical fertilization on the yield of a corn crop, contributing as a proposal for an improvement in agricultural sustainability.

Abstract

The reuse of effluents from intensive dairy farms combined with localized irrigation techniques (fertigation) has become a promising alternative to increase crop productivity while reducing the environmental impact of waste accumulation and industrial fertilizers production. Currently, the reuse of dairy effluents through fertigation by subsurface drip irrigation (SDI) systems is of vital importance for arid regions but it has been poorly studied. The present study aimed to assess the greenhouse gas (GHG) emissions, soil properties, and crop yield of a maize crop fertigated with either treated dairy effluent or dissolved granulated urea applied through an SDI system at a normalized N application rate of 200 kg N ha⁻¹. Fertilizer application was divided into six fertigation events. GHG fluxes were measured during fertigation (62-day) using static chambers. Soil properties were measured previous to fertilizer applications and at the harvest coinciding with crop yield estimation. A slight increase in soil organic matter was observed in both treatments for the 20–60 cm soil depth. Both treatments also showed similar maize yields, but the dairy effluent increased net GHG emissions more than urea during the fertigation period. Nevertheless, the net GHG emissions from the dairy effluent were lower than the theoretical CO₂eq emission that would have been emitted during urea manufacturing or the longer storage of the effluent if it had not been used, showing the need for life-cycle assessments. Local-specific emission factors for N₂O were determined (0.07%), which were substantially lower than the default value (0.5%) of IPCC 2019. Thus, the subsurface drip irrigation systems can lead to low GHG emissions, although further studies are needed.

Genome-Resolved Metagenomic Analysis of Groundwater: Insights into Arsenic Mobilization in Biogeochemical Interaction Networks

High-arsenic (As) groundwaters, a worldwide issue, are critically controlled by multiple interconnected biogeochemical processes. However, there is limited information on the complex biogeochemical interaction networks that cause groundwater As enrichment in aquifer systems. The western Hetao basin was selected as a study area to address this knowledge gap, offering an aquifer system where groundwater flows from an oxidizing proximal fan (low dissolved As) to a reducing flat plain (high dissolved As). The key microbial interaction networks underpinning the biogeochemical pathways responsible for As mobilization along the groundwater flow path were characterized by genome-resolved metagenomic analysis. Genes associated with microbial Fe(II) oxidation and dissimilatory nitrate reduction were noted in the proximal fan, suggesting the importance of nitrate-dependent Fe(II) oxidation in immobilizing As. However, genes catalyzing microbial Fe(III) reduction (omcS) and As(V) detoxification (arsC) were highlighted in groundwater samples downgradient flow path, inferring that reductive dissolution of As-bearing Fe(III) (oxyhydr)oxides mobilized As(V), followed by enzymatic reduction to As(III). Genes associated with ammonium oxidation (hzsABC and hdh) were also positively correlated with Fe(III) reduction (omcS), suggesting a role for the Feammox process in driving As mobilization. The current study illustrates how genomic sequencing tools can help dissect complex biogeochemical systems, and strengthen biogeochemical models that capture key aspects of groundwater As enrichment.

A meta-analysis to examine whether nitrification inhibitors work through selectively inhibiting ammonia-oxidizing bacteria

Nitrification inhibitor (NI) is often claimed to be efficient in mitigating nitrogen (N) losses from agricultural production systems by slowing down nitrification. Increasing evidence suggests that ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) have the genetic potential to produce nitrous oxide (N₂O) and perform the first step of nitrification, but their contribution to N₂O and nitrification remains unclear. Furthermore, both AOA and AOB are probably targets for NIs, but a quantitative synthesis is lacking to identify the “indicator microbe” as the best predictor of NI efficiency under different environmental conditions. In this present study, a meta-analysis to assess the response characteristics of AOB and AOA to NI application was conducted and the relationship between NI efficiency and the AOA and AOB amoA genes response under different conditions was evaluated. The dataset consisted of 48 papers (214 observations). This study showed that NIs on average reduced 58.1% of N₂O emissions and increased 71.4% of soil NH4+ concentrations, respectively. When 3, 4-dimethylpyrazole phosphate (DMPP) was applied with both organic and inorganic fertilizers in alkaline medium soils, it had higher efficacy of decreasing N₂O emissions than in acidic soils. The abundance of AOB amoA genes was dramatically reduced by about 50% with NI application in most soil types. Decrease in N₂O emissions with NI addition was significantly correlated with AOB changes (R² = 0.135, n = 110, P < 0.01) rather than changes in AOA, and there was an obvious correlation between the changes in NH4+ concentration and AOB amoA gene abundance after NI application (R² = 0.037, n = 136, P = 0.014). The results indicated the principal role of AOB in nitrification, furthermore, AOB would be the best predictor of NI efficiency.

Using nitrification inhibitors and deep placement to tackle the trade-offs between NH3 and N2 O emissions in global croplands

Ammonia (NH₃ ) and nitrous oxide (N₂ O) are two important air pollutants that have major impacts on climate change and biodiversity losses. Agriculture represents their largest source and effective mitigation measures of individual gases have been well studied. However, the interactions and trade-offs between NH₃ and N₂ O emissions remain uncertain. Here, we report the results of a two-year field experiment in a wheat-maize rotation in the North China Plain (NCP), a global hotspot of reactive N emissions. Our analysis is supported by a literature synthesis of global croplands, to understand the interactions between NH₃ and N₂ O emissions and to develop the most effective approaches to jointly mitigate NH₃ and N₂ O emissions. Field results indicated that deep placement of urea with nitrification inhibitors (NIs) reduced both emissions of NH₃ by 67% to 90% and N₂ O by 73% to 100%, respectively, in comparison with surface broadcast urea which is the common farmers' practice. But, deep placement of urea, surface broadcast urea with NIs, and application of urea with urease inhibitors probably led to trade-offs between the two gases, with a mitigation potential of -201% to 101% for NH₃ and -112% to 89% for N₂ O. The literature synthesis showed that deep placement of urea with NIs had an emission factor of 1.53%-4.02% for NH₃ and 0.22%-0.36% for N₂ O, which were much lower than other fertilization regimes and the default values recommended by IPCC guidelines. This would translate to a reduction of 3.86-5.47 Tg N yr^-1 of NH₃ and 0.41-0.50 Tg N yr^-1 of N₂ O emissions, respectively, when adopting deep placement of urea with NIs (relative to current practice) in global croplands. We conclude that the combination of NIs and deep placement of urea can successfully tackle the trade-offs between NH₃ and N₂ O emissions, therefore avoiding N pollution swapping in global croplands.

Soil oxygen depletion and corresponding nitrous oxide production at hot moments in an agricultural soil

Hot moments of nitrous oxide (N₂O) emissions induced by interactions between weather and management make a major contribution to annual N₂O budgets in agricultural soils. The causes of N₂O production during hot moments are not well understood under field conditions, but emerging evidence suggests that short-term fluctuations in soil oxygen (O₂) concentration can be critically important. We conducted high time-resolution field observations of O₂ and N₂O concentrations during hot moments in a dryland agricultural soil in Northern China. Three typical management and weather events, including irrigation (Irr.), fertilization coupled with irrigation (Fer.+Irr.) or with extreme precipitation (Fer.+Pre.), were observed. Soil O₂ and N₂O concentrations were measured hourly for 24 h immediately following events and measured daily for at least one week before and after the events. Soil moisture, temperature, and mineral N were simultaneously measured. Soil O₂ concentrations decreased rapidly within 4 h following irrigation in both the Irr. and Fer.+Irr. events. In the Fer.+Pre. event, soil O₂ depletion did not occur immediately following fertilization but began following subsequent continuous rainfall. The soil O₂ concentration dropped to as low as 0.2% (with the highest soil N₂O concentration of up to 180 ppmv) following the Fer.+Pre. event, but only fell to 11.7% and 13.6% after the Fer.+Irr. and Irr. events, which were associated with soil N₂O concentrations of 27 ppmv and 3 ppmv, respectively. During the hot moments of all three events, soil N₂O concentrations were negatively correlated with soil O₂ concentrations (r = -0.5, P < 0.01), showing a quadratic increase as soil O₂ concentrations declined. Our results provide new understanding of the rapid short response of N₂O production to O₂ dynamics driven by changes in soil environmental factors during hot moments. Such understanding helps improve soil management to avoid transitory O₂ depletion and reduce the risk of N₂O production.

Influences of irrigation and fertilization on soil N cycle and losses from wheat-maize cropping system in northern China

Excess of water irrigation and fertilizer consumption by crops has resulted in high soil nitrogen (N) losses and underground water contamination not only in China but worldwide. This study explored the effects of soil N input, soil N output, as well as the effect of different irrigation and N- fertilizer managements on residual N. For this, two consecutive years of winter wheat (Triticum aestivum L.) -summer maize (Zea mays L.) rotation was conducted with: N applied at 0 kg N ha^-1 yr^-1, 420 kg N ha^-1 yr^-1 and 600 kg N ha^-1 yr^-1 under fertigation (DN0, DN420, DN600), and N applied at 0 kg N ha^-1 yr^-1 and 600 kg N ha^-1 yr^-1 under flood irrigation (FN0, FN600). The results demonstrated that low irrigation water consumption resulted in a 57.2% lower of irrigation-N input (p < 0.05) in DN600 when compared to FN600, especially in a rainy year like 2015-2016. For N output, no significant difference was found with all N treatments. Soil gaseous N losses were highly correlated with fertilization (p < 0.001) and were reduced by 23.6%-41.7% when fertilizer N was decreased by 30%. Soil N leaching was highly affected by irrigation and a higher reduction was observed under saving irrigation (reduced by 33.9%-57.3%) than under optimized fertilization (reduced by 23.6%-50.7%). The net N surplus was significantly increased with N application rate but was not affected by irrigation treatments. Under the same N level (600 kg N ha^-1 yr^-1), fertigation increased the Total Nitrogen (TN) stock by 17.5% (0-100 cm) as compared to flood irrigation. These results highlighted the importance to further reduction of soil N losses under optimized fertilization and irrigation combined with N stabilizers or balanced- N fertilization for future agriculture development.

How nitrification-related N2O is associated with soil ammonia oxidizers in two contrasting soils in China?

As a key process contributing to N₂O emissions, nitrification is regulated by soil microbes and mainly affected by soil pH, NH₃ availability, temperature and O₂ availability. Current knowledge gaps include how nitrification-related N₂O is associated with soil microbes in different pH soils. In the current study, a microcosm incubation experiment was conducted with two contrasting soils of different pH (5.08, 8.30) under controlled conditions. The soils were amended with ammonium sulphate ((NH₄)₂SO₄, 50 mg N kg^-1) combined with or without nitrification inhibitors and incubated under 20 °C, 65% water hold capacity (WHC) for three weeks. N₂O fluxes, mineral nitrogen (N) concentrations and ammonia oxidizers populations were measured during the incubation to investigate the correlations of nitrification-related N₂O with ammonia oxidizers. The nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP) was used to inhibit nitrification albeit to various inhibition effects with different soils. Acetylene (0.1% v/v C₂H₂), an inhibitor of AOA and AOB ammonia monooxygenase (AMO), was used to distinguish N₂O emissions by nitrifiers and denitrifiers. 1-octyne (5 μM aqueous), a selective specific AOB inhibitor, was used to assess the relative contributions of AOA and AOB to N₂O emissions. The results showed that N₂O yield for AOA and AOB varied with soil pH. AOB was the key microbial player in alkaline soil, contributing about 85% of nitrification-related N₂O. Conversely, about 78% of nitrification-related N₂O was contributed by AOA in acidic soil. Furthermore, there was a significant and positive relationship between mineral N (NO₂^-, NO₃^-), AOA and AOB populations and nitrification-related N₂O in alkaline soil. However, in acidic soil, NO₃^- concentration and AOA had significantly positive relationships with nitrification-related N₂O. To conclude, soil pH was a key factor affecting the contribution of ammonia oxidizers to nitrification-related N₂O emissions. AOA-related N₂O production dominated at low pH (5.08), while AOB-related N₂O was favored in alkaline soil (pH 8.3).

Gross Ammonification and Nitrification Rates in Soil Amended with Natural and NH4-Enriched Chabazite Zeolite and Nitrification Inhibitor DMPP

Using zeolite-rich tuffs for improving soil properties and crop N-use efficiency is becoming popular. However, the mechanistic understanding of their influence on soil N-processes is still poor. This paper aims to shed new light on how natural and NH4+-enriched chabazite zeolites alter short-term N-ammonification and nitrification rates with and without the use of nitrification inhibitor (DMPP). We employed the 15N pool dilution technique to determine short-term gross rates of ammonification and nitrification in a silty-clay soil amended with two typologies of chabazite-rich tuff: (1) at natural state and (2) enriched with NH4+-N from an animal slurry. Archaeal and bacterial amoA, nirS and nosZ genes, N2O-N and CO2-C emissions were also evaluated. The results showed modest short-term effects of chabazite at natural state only on nitrate production rates, which was slightly delayed compared to the unamended soil. On the other hand, the addition of NH4+-enriched chabazite stimulated NH4+-N production, N2O-N emissions, but reduced NO3−-N production and abundance of nirS-nosZ genes. DMPP efficiency in reducing nitrification rates was dependent on N addition but not affected by the two typologies of zeolites tested. The outcomes of this study indicated the good compatibility of both natural and NH4+-enriched chabazite zeolite with DMPP. In particular, the application of NH4+-enriched zeolites with DMPP is recommended to mitigate short-term N losses.

Soil Health Management Enhances Microbial Nitrogen Cycling Capacity and Activity

Conservation agriculture practices that promote soil health have distinct and lasting effects on microbial populations involved with soil nitrogen (N) cycling. In particular, using a leguminous winter cover crop (hairy vetch) promoted the expression of key functional genes involved in soil N cycling, equaling or exceeding the effects of inorganic N fertilizer.

Soil microbial transformations of nitrogen (N) can be affected by soil health management practices. Here, we report in situ seasonal dynamics of the population size (gene copy abundances) and functional activity (transcript copy abundances) of five bacterial genes involved in soil N cycling (ammonia-oxidizing bacteria [AOB] amoA, nifH, nirK, nirS, and nosZ) in a long-term continuous cotton production system under different management practices (cover crops, tillage, and inorganic N fertilization). Hairy vetch (Vicia villosa Roth), a leguminous cover crop, most effectively promoted the expression of N cycle genes, which persisted after cover crop termination throughout the growing season. Moreover, we observed similarly high or even higher N cycle gene transcript abundances under vetch with no fertilizer as no cover crop with N fertilization throughout the cover crop peak and cotton growing seasons (April, May, and October). Further, both the gene and transcript abundances of amoA and nosZ were positively correlated to soil nitrous oxide (N₂O) emissions. We also found that the abundances of amoA genes and transcripts both positively correlated to field and incubated net nitrification rates. Together, our results revealed relationships between microbial functional capacity and activity and in situ soil N transformations under different agricultural seasons and soil management practices.

IMPORTANCE Conservation agriculture practices that promote soil health have distinct and lasting effects on microbial populations involved with soil nitrogen (N) cycling. In particular, using a leguminous winter cover crop (hairy vetch) promoted the expression of key functional genes involved in soil N cycling, equaling or exceeding the effects of inorganic N fertilizer. Hairy vetch also left a legacy on soil nutrient capacity by promoting the continued activity of N cycling microbes after cover crop termination and into the main growing season. By examining both genes and transcripts involved in soil N cycling, we showed different responses of functional capacity (i.e., gene abundances) and functional activity (i.e., transcript abundances) to agricultural seasons and management practices, adding to our understanding of the effects of soil health management practices on microbial ecology.

Enhanced N2O Production Induced by Soil Salinity at a Specific Range

Nitrous oxide (N₂O) as a by-product of soil nitrogen (N) cylces, its production may be affected by soil salinity which have been proved to have significant negative effect on soil N transformation processes. The response of N₂O production across a range of different soil salinities is poorly documented; accordingly, we conducted a laboratory incubation experiment using an array of soils bearing six different salinity levels ranging from 0.25 to 6.17 dS m⁻¹. With ammonium-rich organic fertilizer as their N source, the soils were incubated at three soil moisture (θ) levels—50%, 75% and 100% of field capacity (θfc)—for six weeks. Both N₂O fluxes and concentrations of ammonium, nitrite and nitrate (NH₄⁺-N, NO₂⁻-N and NO₃⁻-N) were measured throughout the incubation period. The rates of NH₄⁺-N consumption and NO₃⁻-N accumulation increased with increasing soil moisture and decreased with increasing soil salinity, while the accumulation of NO₂⁻-N increased first then decreased with increasing soil salinity. N₂O emissions were significantly promoted by greater soil moisture. As soil salinity increased from 0.25 to 6.17 dS m⁻¹, N₂O emissions from soil first increased then decreased at all three soil moisture levels, with N₂O emissions peaking at electric conductivity (EC) values of 1.01 and 2.02 dS m⁻¹. N₂O emissions form saline soil were found significantly positively correlated to soil NO₂⁻-N accumulation. The present results suggest that greater soil salinity inhibits both steps of nitrification, but that its inhibition of nitrite oxidation is stronger than that on ammonia oxidation, which leads to higher NO₂⁻-N accumulation and enhanced N₂O emissions in soil with a specific salinity range.

Calibration and validation of the DNDC model to estimate nitrous oxide emissions and crop productivity for a summer maize-winter wheat double cropping system in Hebei, China

The main aim of this paper was to calibrate and evaluate the DeNitrification-DeComposition (DNDC) model for estimating N₂O emissions and crop productivity for a summer maize-winter wheat double cropping system with different N fertilizer rates in Hebei, China. The model's performance was assessed before and after calibration and model sensitivity was investigated. The calibrated and validated DNDC performed effectively in estimating cumulative N₂O emissions (coefficient of determination (1:1 relationship; r²) = 0.91; relative deviation (RD) = -13 to 16%) and grain yields for both crops (r² = 0.91; RD = -21 to 7%) from all fertilized treatments, but poorly estimated daily N₂O patterns. Observed and simulated results showed that optimal N fertilizer treatment decreased cumulative N₂O flux, compared to conventional N fertilizer, without a significant impact on grain yields of the summer maize-winter wheat double cropping system. The high sensitivity of the DNDC model to rainfall, soil organic carbon and temperature resulted in significant overestimation of N₂O peaks during the warm wet season. The model also satisfactorily estimated daily patterns/average soil temperature (^o C; 0-5 cm depth) (r² = 0.88 to 0.89; root mean square error (RMSE) = 4 °C; normalized RMSE (nRMSE) = 25% and index of agreement (d) = 0.89-0.97) but under-predicted water filled pore space (WFPS; %; 0-20 cm depth) (r² = 0.3 to 0.4) and soil ammonium and nitrate (exchangeable NH₄⁺ & NO₃^-; kg N ha^-1; r² = 0.97). With reference to the control treatment (no N fertilizer), DNDC was weak in simulating both N₂O emissions and crop productivity. To be further improved for use under pedo-climatic conditions of the summer maize-winter wheat double cropping system we suggest future studies to identify and resolve the existing problems with the DNDC, especially with the control treatment.

An overview of selected emerging outdoor airborne pollutants and air quality issues: The need to reduce uncertainty about environmental and human impacts

According to the literature, it is estimated that outdoor air pollution is responsible for the premature death in a range from 3.7 to 8.9 million persons on an annual basis across the world. Although there is uncertainty on this figure, outdoor air pollution represents one of the greatest global risks to human health. In North America, the rapid evolution of technologies (e.g., nanotechnology, unconventional oil and gas rapid development, higher demand for fertilizers in agriculture) and growing demand for ground, marine and air transportation may result in significant increases of emissions of pollutants that have not been carefully studied so far. As a result, these atmospheric pollutants insufficiently addressed by science in Canada and elsewhere are becoming a growing issue with likely human and environmental impacts in the near future. Here, an emerging pollutant is defined as one that meets the following criteria: 1) potential or demonstrated risk for humans or the environment, 2) absence of Canada-wide national standard, 3) insufficient routine monitoring, 4) yearly emissions greater than one ton in Canada, 5) insufficient data concerning significant sources, fate, and detection limit, and 6) insufficiently addressed by epidemiological studies. A new methodology to rank emerging pollutants is proposed here based on weighting multiple criteria. Some selected emerging issues are also discussed here and include the growing concern of ultrafine or nanoparticles, growing ammonia emissions (due to rapid expansion of the agriculture), increased methane/ethane/propane emissions (due to the expanding hydraulic fracturing in the oil and gas sector) and the growing transportation sector. Finally, the interaction between biological and anthropogenic pollution has been found to be a double threat for public health. Here, a multidisciplinary and critical overview of selected emerging pollutants and related critical issues is presented with a focus in Canada.Implications: This overview paper provides a selection methodology for emerging pollutants in the atmospheric environment. It also provides a critical discussion of some related issues. The ultimate objective is to inform about the need to 1) address emerging issues through adequate surface monitoring and modeling in order to inform the development of regulations, 2) reduce uncertainties by geographically mapping emerging pollutants (e.g., through data fusion, data assimilation of observations into air quality models) which can improve the scientific support of epidemiological studies and policies. This review also highlights some of the difficulties with the management of these emerging pollutants, and the need for an integrated approach.

Linking microbial community composition to hydrogeochemistry in the western Hetao Basin: Potential importance of ammonium as an electron donor during arsenic mobilization

Various functional groups of microorganisms and related biogeochemical processes are likely to control arsenic (As) mobilization in groundwater systems. However, spatially-dependent correlations between microbial community composition and geochemical zonation along groundwater flow paths are not fully understood, especially with respect to arsenic mobility. The western Hetao Basin was selected as the study area to address this limitation, where groundwater flows from a proximal fan (geochemical-group I: low As, oxidizing), through a transition area (geochemical-group II: moderate As, moderately-reducing) and then to a flat plain (geochemical-group III: high As, reducing). High-throughput Illumina 16S rRNA gene sequencing showed that the microbial community structure in the proximal fan included bacteria affiliated with organic carbon degradation and nitrate-reduction or even nitrate-dependant Fe(II)-oxidation, mainly resulting in As immobilization. In contrast, for the flat plain, high As groundwater contained Fe(III)- and As(V)-reducing bacteria, consistent with current models on As mobilization driven via reductive dissolution of Fe(III)/As(V) mineral assemblages. However, Spearman correlations between hydrogeochemical data and microbial community compositions indicated that ammonium as a possible electron donor induced reduction of Fe oxide minerals, suggesting a wider range of metabolic pathways (including ammonium oxidation coupled with Fe(III) reduction) driving As mobilization in high As groundwater systems.

Changes of Soil Microbes Related with Carbon and Nitrogen Cycling after Long-Term CO2 Enrichment in a Typical Chinese Maize Field

Elevated atmospheric CO2 concentration (eCO2) has been the most important driving factor and characteristic of climate change. To clarify the effects of eCO2 on the soil microbes and on the concurrent status of soil carbon and nitrogen, an experiment was conducted in a typical summer maize field based on a 10-year mini FACE (Free Air Carbon Dioxide Enrichment) system in North China. Both rhizospheric and bulk soils were collected for measurement. The soil microbial carbon (MBC), nitrogen (MBN), and soil mineral N were measured at two stages. Characteristics of microbes were assayed for both rhizospheric soil and bulk soils at the key stage. We examined the plasmid copy numbers, diversities, and community structures of bacteria (in terms of 16s rRNA), fungi (in terms of ITS-internal transcribed spacer), ammonia oxidizing bacteria (AOB) and denitrifiers including nirK, nirS, and nosZ using the Miseq sequencing technique. Results showed that under eCO2 conditions, both MBC and MBN in rhizospheric soil were increased significantly. The quantity of ITS was increased in the eCO2 treatment compared with that in the ambient CO2 (aCO2) treatment, while the quantity of 16s rRNA in rhizospheric soil showed decrease in the rhizospheric soil in the eCO2 treatment. ECO2 changed the relative abundance of microbes in terms of compositional proportion of some orders or genera particularly in the rhizospheric soil-n particular, Chaetomium increased for ITS, Subgroups 4 and 6 increased for 16s rRNA, Nitrosospira decreased for AOB, and some genera showed increase for nirS, nirK, and nosZ. Nitrate N was the main inorganic nitrogen form at the tasseling stage and both quantities of AOB and denitrifiers, as well as the nosZ/(nirS+nirK) showed an increase under eCO2 conditions particularly in the rhizospheric soil. The Nitrosospira decreased in abundance under eCO2 conditions in the rhizospheric soil and some genera of denitrifiers also showed differences in abundance. ECO2 did not change the diversities of microbes significantly. In general, results suggested that 10 years of eCO2 did affect the active component of C and N pools (such as MBC and MBN) and both the quantities and relative abundance of microbes which are involved in carbon and nitrogen cycling, possibly due to the differences in both the quantities and component of substrate for relevant microbes in the rhizospheric soils.

Paenibacillus polymyxa biofertilizer application in a tea plantation reduces soil N2O by changing denitrifier communities

Increasing the use of nitrogen fertilizers in tea orchards has led to intense nitrous oxide (N₂O) emissions. Foliar application of Paenibacillus polymyxa biofertilizer has been proven to be beneficial for organic tea production. In this study, tea yield and quality were significantly improved after application of P. polymyxa biofertilizer compared with the control but were not significantly different from chemical fertilizer treatments. However, the average N₂O fluxes in tea fields treated with chemical fertilizers and biofertilizers (225 kg N·ha^-1·year^-1 for both) were 50.6-973.7 and 0.6-29.1 times higher than those in the control treatment, respectively. Pot experiments conducted to explore the mechanism of N₂O reduction induced by P. polymyxa biofertilizer showed that applying P. polymyxa in addition to urea could reduce N₂O fluxes by 36.5%-73.1%. Quantitative PCR analysis suggested that a significant increase in the quantity of nirK and nosZ genes was linked to the reduction of N₂O, and high-throughput sequencing of nosZ revealed active and potentially efficient denitrifiers in different treatments. Our findings suggest that P. polymyxa biofertilizer is in line with the requirements of modern agriculture, which aims to increase product yield and quality while reducing negative environmental impacts.

Oxygen Regulates Nitrous Oxide Production Directly in Agricultural Soils

Oxygen (O₂) plays a critical and yet poorly understood role in regulating nitrous oxide (N₂O) production in well-structured agricultural soils. We investigated the effects of in situ O₂ dynamics on N₂O production in a typical intensively managed Chinese cropping system under a range of environmental conditions (temperature, moisture, ammonium, nitrate, dissolved organic carbon, and so forth). Climate and management (fertilization, irrigation, precipitation, and temperature), and their interactions significantly affected soil O₂ and N₂O concentrations (P < 0.05). Soil O₂ concentration was the most significant factor correlating with soil N₂O concentration (r = -0.71) when compared with temperature, water-filled pore space, and ammonium concentration (r = 0.30, 0.25, and 0.26, respectively). Soil N₂O concentration increased exponentially with decreasing soil O₂ concentrations. The exponential model of N treatments and fertilization with irrigation/precipitation events predicted 74-90% and 58% of the variance in soil N₂O concentrations, respectively. Our results highlight that the soil O₂ status is the proximal, direct, and the most decisive environmental trigger for N₂O production, outweighing the effects of other factors and could be a key variable integrating the aggregated effects of various complex interacting variables. This study offers new opportunities for developing more sensitive approaches to predicting and through appropriate management interventions mitigating N₂O emissions from agricultural soils.

Tannin-containing legumes and forage diversity influence foraging behavior, diet digestibility, and nitrogen excretion by lambs1,2

Diverse combinations of forages with different nutrient profiles and plant secondary compounds may improve intake and nutrient utilization by ruminants. We tested the influence of diverse dietary combinations of tannin- (sainfoin-Onobrichis viciifolia; birdsfoot trefoil-Lotus corniculatus) and non-tannin- (alfalfa-Medicago sativa L.) containing legumes on intake and diet digestibility in lambs. Freshly cut birdsfoot trefoil, alfalfa, and sainfoin were offered in ad libitum amounts to 42 lambs in individual pens assigned to 7 treatments (6 animals/treatment): 1) single forage species (sainfoin [SF], birdsfoot trefoil [BFT], and alfalfa [ALF]), 2) all possible 2-way choices of the 3 forage species (alfalfa-sainfoin [ALF-SF], alfalfa-birdsfoot trefoil [ALF-BFT], and sainfoin-birdsfoot trefoil [SF-BFT]), or 3) a choice of all 3 forages (alfalfa-sainfoin-birdsfoot trefoil [ALF-SF-BFT]). Dry matter intake (DMI) was greater in ALF than in BFT (P = 0.002), and DMI in SF tended to be greater than in BFT (P = 0.053). However, when alfalfa was offered in a choice with either of the tannin-containing legumes (ALF-SF; ALF-BFT), DMI did not differ from ALF, whereas DMI in SF-BFT did not differ from SF (P > 0.10). When lambs were allowed to choose between 2 or 3 legume species, DMI was greater (36.6 vs. 33.2 g/kg BW; P = 0.038) or tended to be greater (37.4 vs. 33.2 g/kg BW; P = 0.067) than when lambs were fed single species, respectively. Intake did not differ between 2- or 3-way choice treatments (P = 0.723). Lambs preferred alfalfa over the tannin-containing legumes in a 70:30 ratio for 2-way choices, and alfalfa > sainfoin > birdsfoot trefoil in a 53:33:14 ratio for the 3-way choice. In vivo digestibility (DMD) was SF > BFT (72.0% vs. 67.7%; P = 0.012) and DMD in BFT tended to be greater than in ALF (64.6%; P = 0.061). Nevertheless, when alfalfa was offered in a choice with either sainfoin or birdsfoot trefoil (ALF-SF; ALF-BFT), DMD was greater than ALF (P < 0.001 and P = 0.007, respectively), suggesting positive associative effects. The SF treatment had lower blood urea nitrogen and greater fecal N/N intake ratios than the ALF, BFT, or ALF-BFT treatments (P < 0.05), implying a shift in the site of N excretion from urine to feces. In conclusion, offering diverse combinations of legumes to sheep enhanced intake and diet digestibility relative to feeding single species, while allowing for the incorporation of beneficial bioactive compounds like condensed tannins into the diet.

Nitrogen Mineralization in a Sandy Soil Amended with Treated Low-Phosphorus Broiler Litter

Low-phosphorus (P) litter, a manure treatment byproduct, can be used as an organic soil amendment and nitrogen (N) source but its effect on N mineralization is unknown. A laboratory incubation study was conducted to compare the effect of adding untreated (fine or pelletized) broiler litter (FUL or PUL) versus extracted, low-P treated (fine or pelletized) broiler litter (FLP or PLP) on N dynamics in a sandy soil. All four litter materials were surface applied at 157 kg N ha−1. The soil accumulation of ammonium (NH4+) and nitrate (NO3−) were used to estimate available mineralized N. The evolution of carbon dioxide (CO2), ammonia (NH3), and nitrous oxide (N2O) was used to evaluate gaseous losses during soil incubation. Untreated litter materials provided high levels of mineralized N, 71% of the total N applied for FUL and 64% for PUL, while NH3 losses were 24% to 35% and N2O losses were 3.3% to 7.4% of the total applied N, respectively. Soil application of low-P treated litter provided lower levels of mineralized N, 42% for FLP and 29% for PLP of the total applied N with NH3 losses of 5.7% for FLP for and 4.1% for PLP, and very low N2O losses (0.5%). Differences in mineralized N between untreated and treated broiler litter materials were attributed to contrasting C:N ratios and acidity of the low-P litter byproducts. Soil application of treated low-P litter appears as an option for slow mineral N release and abatement of NH3 and N2O soil losses.

Gross N transformation rates and related N2O emissions in Chinese and UK agricultural soils

The properties of agricultural soils in various regions of the world are variable and can have a significant but poorly understood impact on soil nitrogen (N) transformations and nitrous oxide (N₂O) emissions. For this reason, we undertook a study of gross N transformations and related N₂O emissions in contrasting agricultural soils from China and the UK. Seven Chinese and three UK agricultural soils were collected for study using a ¹⁵N tracing approach. The soil pH ranged from 5.4 to 8.7, with three acidic soils collected from Jinjing, Lishu and Boghall; one neutral soil collected from Changshu, and the other six alkaline soils collected from Quzhou, Zhangye, Changwu, Jinzhong, Boxworth and Stetchworth. Our results showed that the main N transformation processes were oxidation of ammonium (NH₄⁺) to nitrate (NO₃^-) (O_NH4), and mineralization of organic N to NH₄⁺. The gross autotrophic nitrification rates calculated in the three acidic soils were between 0.25 and 4.15 mg N kg^-1 d^-1, which were significantly lower (p < 0.05) than those in the remaining neutral and alkaline soils ranging from 6.94 to 14.43 mg N kg^-1 d^-1. Generally, soil pH was positively correlated (p < 0.001) with gross autotrophic nitrification rate and cumulative N₂O emissions, indicating that soil pH was an important factor regulating autotrophic nitrification and N₂O emissions. There was also a significant positive correlation between the gross autotrophic nitrification rate and cumulative N₂O emissions, highlighting the importance of this process for producing N₂O emissions in these agricultural soils under aerobic conditions. Gross NH₄⁺ immobilization rates were very low in most soils except for the Jinjing soil with the lowest pH. In conclusion, the gross autotrophic nitrification rates and related N₂O emissions were controlled by soil pH irrespectively of the soil's origin in these agricultural soils.

Nitrous Oxide Emissions Increase Exponentially When Optimum Nitrogen Fertilizer Rates Are Exceeded in the North China Plain

The IPCC assume a linear relationship between nitrogen (N) application rate and nitrous oxide (N₂O) emissions in inventory reporting, however, a growing number of studies show a nonlinear relationship under specific soil-climatic conditions. In the North China plain, a global hotspot of N₂O emissions, covering a land as large as Germany, the correlation between N rate and N₂O emissions remains unclear. We have therefore specifically investigated the N₂O response to N applications by conducting field experiments with five N rates, and high-frequency measurements of N₂O emissions across contrasting climatic years. Our results showed that cumulative and yield-scaled N₂O emissions both increased exponentially as N applications were raised above the optimum rate in maize ( Zea mays L.). In wheat ( Triticum aestivum L.) there was a corresponding quadratic increase in N₂O emissions with the magnitude of the response in 2012-2013 distinctly larger than that in 2013-2014 owing to the effects of extreme snowfall. Existing empirical models (including the IPCC approach) of the N₂O response to N rate have overestimated N₂O emissions in the North China plain, even at high N rates. Our study therefore provides a new and robust analysis of the effects of fertilizer rate and climatic conditions on N₂O emissions.

N2O emission contributions by different pathways and associated microbial community dynamics in a typical calcareous vegetable soil

Nitrous oxide, one of the powerful long-lived greenhouse gases, is emitted mainly through biological processes, especially from fertilized soil. It is critical to partition the contribution of different pathways to N₂O emissions and the relevant characteristics of microbial communities to identify the key N₂O processes. An microcosm was conducted to partition the N₂O emissions from different pathways, and the changes in soil mineral nitrogen and various nitrifiers (amoA bacteria and amoA archaea) and denitrifiers (nirS, nirK, and nosZ) were also determined using qPCR and high-throughput sequencing methods. Different gas inhibitor combinations (i.e., 0.06% acetylene, pure oxygen, 0.06% acetylene in pure oxygen, and pure helium) were used to partition the N₂O pathways. A 5% oxygen treatment, with and without acetylene, was also included so that the N₂O emissions could be measured under lower oxygen partial pressure. Results showed that ammonia-oxidation (AO) and successive nitrifier denitrification (NiD) were the main pathways contributing to N₂O emissions at the earlier period after ammonium sulfate application with the cumulative N₂O emissions accounting for 30.9% and 59.2% of the total N₂O emissions, respectively. The higher NiD N₂O contributions occurred when the soil nitrite concentration appeared higher, especially under the lower oxygen conditions. Higher N₂O emissions from AO and NiD were associated with the compositional proportion of some dominant AOB species. Denitrification contributed more N₂O (63.6%-69.3%) in the later period during incubation, coinciding with the following characteristics for denitrifiers: a) lower nosZ/(nirS + nirK) ratio, b) more diversity in nirS, and c) different proportions of some dominant species in nirK. Our results demonstrated that higher AO and successive NiD were the main N₂O emission pathways, suggesting that controlling the ammonium content and weakening the AO are critical in decreasing N₂O emissions.

Abiotic Conversion of Extracellular NH2OH Contributes to N2O Emission during Ammonia Oxidation

Abiotic processes involving the reactive ammonia-oxidation intermediates nitric oxide (NO) or hydroxylamine (NH₂OH) for N₂O production have been indicated recently. The latter process would require the availability of substantial amounts of free NH₂OH for chemical reactions during ammonia (NH₃) oxidation, but little is known about extracellular NH₂OH formation by the different clades of ammonia-oxidizing microbes. Here we determined extracellular NH₂OH concentrations in culture media of several ammonia-oxidizing bacteria (AOB) and archaea (AOA), as well as one complete ammonia oxidizer (comammox) enrichment (Ca. Nitrospira inopinata) during incubation under standard cultivation conditions. NH₂OH was measurable in the incubation media of Nitrosomonas europaea, Nitrosospira multiformis, Nitrososphaera gargensis, and Ca. Nitrosotenuis uzonensis, but not in media of the other tested AOB and AOA. NH₂OH was also formed by the comammox enrichment during NH₃ oxidation. This enrichment exhibited the largest NH₂OH:final product ratio (1.92%), followed by N. multiformis (0.56%) and N. gargensis (0.46%). The maximum proportions of NH₄⁺ converted to N₂O via extracellular NH₂OH during incubation, estimated on the basis of NH₂OH abiotic conversion rates, were 0.12%, 0.08%, and 0.14% for AOB, AOA, and Ca. Nitrospira inopinata, respectively, and were consistent with published NH₄⁺:N₂O conversion ratios for AOB and AOA.

Widespread production of nonmicrobial greenhouse gases in soils

Carbon dioxide (CO₂ ), methane (CH₄ ), and nitrous oxide (N₂ O) are the three most important greenhouse gases (GHGs), and all show large uncertainties in their atmospheric budgets. Soils of natural and managed ecosystems play an extremely important role in modulating their atmospheric abundance. Mechanisms underlying the exchange of these GHGs at the soil-atmosphere interface are often assumed to be exclusively microbe-mediated (M-GHGs). We argue that it is a widespread phenomenon for soil systems to produce GHGs through nonmicrobial pathways (NM-GHGs) based on a review of the available evidence accumulated over the past half century. We find that five categories of mechanistic process, including photodegradation, thermal degradation, reactive oxidative species (ROS) oxidation, extracellular oxidative metabolism (EXOMET), and inorganic chemical reactions, can be identified as accounting for their production. These pathways are intricately coupled among themselves and with M-GHGs production and are subject to strong influences from regional and global change agents including, among others, climate warming, solar radiation, and alterations of atmospheric components. Preliminary estimates have suggested that NM-GHGs could play key roles in contributing to budgets of GHGs in the arid regions, whereas their global importance would be enhanced with accelerated global environmental changes. Therefore, more research should be undertaken, with a differentiation between NM-GHGs and M-GHGs, to further elucidate the underlying mechanisms, to investigate the impacts of various global change agents, and to quantify their contributions to regional and global GHGs budgets. These efforts will contribute to a more complete understanding of global carbon and nitrogen cycling and a reduction in the uncertainty of carbon-climate feedbacks in the Earth system.

Contributions of nitrification and denitrification to N2O emissions from aged refuse bioreactor at different feeding loads of ammonia substrates

Nitrous oxide (N₂O) is a strong greenhouse gas, and its emissions from microbial nitrification (NF) and denitrification (DNF) are a threat to the environment. In the present study, a combined approach consisting of ¹⁵N stable isotope and molecular biology (qPCR) was used to determine the contributions of autotrophic nitrification (ANF), heterotrophic nitrification (HNF), and DNF to N₂O emissions in laboratory incubations of aged refuse for different ammonia (NH₄⁺-N) loads (200, 400, and 800mg·NH₄⁺-N/kg·aged refuse) and incubation times (2-144h). Experimental results showed that the N₂O emissions increased with the increase in applied amount of NH₄⁺-N substrates. Simultaneous nitrification and denitrification (SND) were demonstrated to be present in the incubations of aged refuse. The results of ¹⁵N stable isotope labelling experiment indicated that NF (54.60%-68.8%) and DNF (83.38%-85.90%) contributed to majority of N₂O emissions in the incubations of 24h and 72h, respectively. The results of functional genes (amoA and nosZ) quantification experiments indicated that the high gene copies of amoA and nosZ were present at 24h and 72h, respectively. The study also demonstrated the utility of a combined stable isotope and molecular biology approach. The approaches not only provide similar inferences about the N₂O emissions, but also enable the determination of relative contributions of ANF, HNF, and DNF to N₂O emissions. The results of the study are important in providing guidance to artificially optimize the operating conditions for alleviating N₂O emissions in aged refuse bioreactors.

Effects of Positively Charged Dicyandiamide and Nitrogen Fertilizer Sources on Nitrous Oxide Emissions in Irrigated Corn

Synthetic nitrogen (N) fertilizer formulations vary in their effects as substrates on nitrous oxide (NO) emissions. Mitigation of NO emissions can potentially be achieved through appropriate choice of N fertilizer sources combined with stabilizers. The effects of three N fertilizers and urease and nitrification inhibitors on NO emissions, crop N uptake, and yields were determined in a furrow-irrigated corn ( L.) system in Reiff loam soil in the Sacramento Valley of California for one growing season. Aqua ammonia (Aq. NH), urea ammonium nitrate (UAN), and calcium nitrate were sidedressed at the rate of 202 kg N ha. The control treatment received only starter fertilizer (20 kg N ha). Total seasonal emissions were in the order Aq. NH > UAN > calcium nitrate = control with 1.38, 0.97, 0.35, and 0.27 kg NO-N ha, respectively. A novel, positively charged form of dicyandiamide, KAS-771G77 (G77), was combined with Aq. NH and UAN to test the effectiveness of this nitrification inhibitor in reducing NO emissions. When combined with Aq. NH, G77 did not reduce the emissions, but G77 significantly lowered them in the UAN treatment. A similar reduction of NO emissions in the UAN treatment was achieved with the urease and nitrification inhibitor AgrotainPlus. Yields and N use efficiency did not differ among the fertilized treatments. Ammoniacal fertilizers had higher NO emissions than nitrate-based fertilizers, which could imply nitrification pathways as a source of NO emissions. The use of G77 or AgrotainPlus, when applied with UAN, was an effective NO mitigation practice.

Changes in land use driven by urbanization impact nitrogen cycling and the microbial community composition in soils

Transition of populations from rural to urban living causes landscape changes and alters the functionality of soil ecosystems. It is unclear how this urbanization disturbs the microbial ecology of soils and how the disruption influences nitrogen cycling. In this study, microbial communities in turfgrass-grown soils from urban and suburban areas around Xiamen City were compared to microbial communities in the soils from rural farmlands. The potential N₂O emissions, potential denitrification activity, and abundances of denitrifiers were higher in the rural farmland soils compared with the turfgrass soils. Ammonia oxidizing archaea (AOA) were more abundant than ammonia oxidizing bacteria (AOB) in turfgrass soils. Within turfgrass soils, the potential nitrification activities and AOA abundances were higher in the urban than in the suburban soils. These results indicate a more pivotal role of AOA in nitrification, especially in urban soils. Microbial community composition was distinctly grouped along urbanization categories (urban, suburban, and rural) classified according to the population density, which can in part be attributed to the differences in soil properties. These observed changes could potentially have a broader impact on soil nutrient availability and greenhouse gas emissions.

Linkage between N2O emission and functional gene abundance in an intensively managed calcareous fluvo-aquic soil

The linkage between N₂O emissions and the abundance of nitrifier and denitrifier genes is unclear in the intensively managed calcareous fluvo-aquic soils of the North China Plain. We investigated the abundance of bacterial amoA for nitrification and narG, nirS, nirK, and nosZ for denitrification by in situ soil sampling to determine how the abundance of these genes changes instantly during N fertilization events and is related to high N₂O emission peaks. We also investigated how long-term incorporated straw and/or manure affect(s) the abundance of these genes based on a seven-year field experiment. The overall results demonstrate that the long-term application of urea-based fertilizer and/or manure significantly enhanced the number of bacterial amoA gene copies leading to high N₂O emission peaks after N fertilizer applications. These peaks contributed greatly to the annual N₂O emissions in the crop rotation. A significant correlation between annual N₂O emissions and narG, nirS, and nirK gene numbers indicates that the abundance of these genes is related to N₂O emission under conditions for denitrification, thus partly contributing to the annual N₂O emissions. These findings will help to draw up appropriate measures for mitigation of N₂O emissions in this ‘hotspot’ region.

Pathways of N removal and N2O emission from a one-stage autotrophic N removal process under anaerobic conditions

To investigate the pathways of nitrogen (N) removal and N₂O emission in a one-stage autotrophic N removal process during the non-aeration phase, biofilm from an intermittent aeration sequencing batch biofilm reactor (SBBR) and organic carbon-free synthetic wastewater were applied to two groups of lab-scale batch experiments in anaerobic conditions using a ¹⁵N isotopic tracer and specific inhibitors, respectively. Then, the microbial composition of the biofilm was analysed using high-throughput sequencing. The results of the ¹⁵N isotopic experiments showed that anaerobic ammonium oxidation (Anammox) was the main pathway of N transformation under anaerobic conditions and was responsible for 83–92% of N₂ production within 24 h. Furthermore, experiments using specific inhibitors revealed that when nitrite was the main N source under anaerobic conditions, N₂O emissions from heterotrophic denitrification (HD) and ammonia-oxidizing bacteria (AOB) denitrification were 64% and 36%, respectively. Finally, analysing the microbial composition demonstrated that Proteobacteria, Planctomycetes, and Nitrospirae were the dominant microbes, corresponding to 21%, 13%, and 7% of the microbial community, respectively, and were probably responsible for HD, Anammox, and AOB denitrification, respectively.

Nitrate leaching in a winter wheat-summer maize rotation on a calcareous soil as affected by nitrogen and straw management

Nitrate leaching is one of the most important pathways of nitrogen (N) loss which leads to groundwater contamination or surface water eutrophication. Clarifying the rates, controlling factors and characteristics of nitrate leaching is the pre-requisite for proposing effective mitigation strategies. We investigated the effects of interactions among chemical N fertilizer, straw and manure applications on nitrogen leaching in an intensively managed calcareous Fluvo-aquic soil with winter wheat-summer maize cropping rotations on the North China Plain from October 2010 to September 2013 using ceramic suction cups and seepage water calculations based on a long-term field experiment. Annual nitrate leaching reached 38–60 kg N ha⁻¹ from conventional N managements, but declined by 32–71% due to optimum N, compost manure or municipal waste treatments, respectively. Nitrate leaching concentrated in the summer maize season, and fewer leaching events with high amounts are the characteristics of nitrate leaching in this region. Overuse of chemical N fertilizers, high net mineralization and nitrification, together with predominance of rainfall in the summer season with light soil texture are the main controlling factors responsible for the high nitrate leaching loss in this soil-crop-climatic system.

Effects of dicyandiamide and acetylene on N2O emissions and ammonia oxidizers in a fluvo-aquic soil applied with urea

Ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) are crucial for N₂O emission as they carry out the key step of nitrification. Dicyandiamide (DCD) and acetylene (C₂H₂) are typical nitrification inhibitors (NIs), while the comparative effects of these NIs on N₂O production and ammonia oxidizers' (AOB and AOA) growth are unclear. Four treatments including a control, urea, urea + DCD, and urea + C₂H₂ were set up to investigate their effect of inhibiting soil nitrification, nitrification-related N₂O emission as well as the growth of ammonia oxidizers with a fluvo-aquic soil using microcosms for 28 days. N₂O emission and net nitrification rate increased after the application of urea, but were significantly restrained in urea + NI treatments, while C₂H₂ was more effective in reducing N₂O emission and nitrification rate than DCD. The abundance of AOB, which was significantly correlated with N₂O emission and net nitrification rate, was more inhibited by C₂H₂ than DCD. Furthermore, the application of urea in all the soils had little impact on the AOA community, while obvious shifts of AOB community structure were found compared with the control. All AOB sequences fell within Nitrosospira cluster 3, and the AOA community was clustered to group 1.1b. Collectively, it indicated that application of urea combined with NIs (DCD or C₂H₂) could potentially alter N₂O emission, mainly through regulating the growth of AOB but not AOA in this fluvo-aquic soil.

Biological nitrification inhibition by rice root exudates and its relationship with nitrogen-use efficiency

Microbial nitrification in soils is a major contributor to nitrogen (N) loss in agricultural systems. Some plants can secrete organic substances that act as biological nitrification inhibitors (BNIs), and a small number of BNIs have been identified and characterized. However, virtually no research has focused on the important food crop, rice (Oryza sativa). Here, 19 rice varieties were explored for BNI potential on the key nitrifying bacterium Nitrosomonas europaea. Exudates from both indica and japonica genotypes were found to possess strong BNI potential. Older seedlings had higher BNI abilities than younger ones; Zhongjiu25 (ZJ25) and Wuyunjing7 (WYJ7) were the most effective genotypes among indica and japonica varieties, respectively. A new nitrification inhibitor, 1,9-decanediol, was identified, shown to block the ammonia monooxygenase (AMO) pathway of ammonia oxidation and to possess an 80% effective dose (ED₈₀ ) of 90 ng μl^-1 . Plant N-use efficiency (NUE) was determined using a ¹⁵ N-labeling method. Correlation analyses indicated that both BNI abilities and 1,9-decanediol amounts of root exudates were positively correlated with plant ammonium-use efficiency and ammonium preference. These findings provide important new insights into the plant-bacterial interactions involved in the soil N cycle, and improve our understanding of the BNI capacity of rice in the context of NUE.

Nitrification Is a Primary Driver of Nitrous Oxide Production in Laboratory Microcosms from Different Land-Use Soils

Most studies on soil N2O emissions have focused either on the quantifying of agricultural N2O fluxes or on the effect of environmental factors on N2O emissions. However, very limited information is available on how land-use will affect N2O production, and nitrifiers involved in N2O emissions in agricultural soil ecosystems. Therefore, this study aimed at evaluating the relative importance of nitrification and denitrification to N2O emissions from different land-use soils and identifying the potential underlying microbial mechanisms. A (15)N-tracing experiment was conducted under controlled laboratory conditions on four agricultural soils collected from different land-use. We measured N2O fluxes, nitrate ([Formula: see text]), and ammonium ([Formula: see text]) concentration and (15)N2O, (15)[Formula: see text], and (15)[Formula: see text] enrichment during the incubation. Quantitative PCR was used to quantify ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB). Our results showed that nitrification was the main contributor to N2O production in soils from sugarcane, dairy pasture and cereal cropping systems, while denitrification played a major role in N2O production in the vegetable soil under the experimental conditions. Nitrification contributed to 96.7% of the N2O emissions in sugarcane soil followed by 71.3% in the cereal cropping soil and 70.9% in the dairy pasture soil, while only around 20.0% of N2O was produced from nitrification in vegetable soil. The proportion of nitrified nitrogen as N2O (PN2O-value) varied across different soils, with the highest PN2O-value (0.26‰) found in the cereal cropping soil, which was around 10 times higher than that in other three systems. AOA were the abundant ammonia oxidizers, and were significantly correlated to N2O emitted from nitrification in the sugarcane soil, while AOB were significantly correlated with N2O emitted from nitrification in the cereal cropping soil. Our findings suggested that soil type and land-use might have strongly affected the relative contribution of nitrification and denitrification to N2O production from agricultural soils.

Significant accumulation of nitrate in Chinese semi-humid croplands

Soil nitrate is important for crop growth, but it can also leach to groundwater causing nitrate contamination, a threat to human health. Here, we report a significant accumulation of soil nitrate in Chinese semi-humid croplands based upon more than 7000 samples from 141 sites collected from 1994 to 2015. In the 0–4 meters depth of soil, total nitrate accumulation reaches 453 ± 39, 749 ± 75, 1191 ± 89, 1269 ± 114, 2155 ± 330 kg N ha⁻¹ on average in wheat, maize, open-field vegetables (OFV), solar plastic-roofed greenhouse vegetables (GHV) and orchard fields, respectively. Surprisingly, there is also a comparable amount of nitrate accumulated in the vadose-zone deeper than 4 meters. Over-use of N fertilizer (and/or manure) and a declining groundwater table are the major causes for this huge nitrate reservoir in the vadose-zone of semi-humid croplands, where the nitrate cannot be denitrified due to the presence of oxygen and lack of carbon sources. Future climatic change with more extreme rainfall events would increase the risk of accumulated nitrate moving downwards and threatening groundwater nitrate contamination.

Illumina MiSeq sequencing reveals the community composition of NirS-Type and NirK-Type denitrifiers in Zhoucun reservoir – a large shallow eutrophic reservoir in northern China

Denitrification is a major biological process that reduces nitrate to nitrogen gas (N₂or N₂O).

Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production

Better understanding of process controls over nitrous oxide (N₂O) production in urine-impacted ‘hot spots’ and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N₂O, and genes associated with nitrification in two soils (‘L’ and ‘W’) having similar texture, pH, C, and C/N ratio. Solution-phase ammonia (slNH₃) was also calculated accounting for non-linear ammonium (NH₄⁺) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO₃⁻) levels than soil L, but was more resistant to nitrite (NO₂⁻) accumulation and produced two to ten times less N₂O than soil L. Genes associated with NO₂⁻ oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO₂⁻ was strongly correlated with N₂O production, and cumulative (c-) slNH₃ explained 87% of the variance in c-NO₂⁻. Differences between soils were explained by greater slNH₃ in soil L which inhibited NO₂⁻ oxidization leading to greater NO₂⁻ levels and N₂O production. This is the first study to correlate the dynamics of soil slNH₃, NO₂⁻, N₂O and nitrifier genes, and the first to show how ASC can regulate NO₂⁻ levels and N₂O production.

Integrated reactive nitrogen budgets and future trends in China

Reactive nitrogen (Nr) plays a central role in food production, and at the same time it can be an important pollutant with substantial effects on air and water quality, biological diversity, and human health. China now creates far more Nr than any other country. We developed a budget for Nr in China in 1980 and 2010, in which we evaluated the natural and anthropogenic creation of Nr, losses of Nr, and transfers among 14 subsystems within China. Our analyses demonstrated that a tripling of anthropogenic Nr creation was associated with an even more rapid increase in Nr fluxes to the atmosphere and hydrosphere, contributing to intense and increasing threats to human health, the sustainability of croplands, and the environment of China and its environs. Under a business as usual scenario, anthropogenic Nr creation in 2050 would more than double compared with 2010 levels, whereas a scenario that combined reasonable changes in diet, N use efficiency, and N recycling could reduce N losses and anthropogenic Nr creation in 2050 to 52% and 64% of 2010 levels, respectively. Achieving reductions in Nr creation (while simultaneously increasing food production and offsetting imports of animal feed) will require much more in addition to good science, but it is useful to know that there are pathways by which both food security and health/environmental protection could be enhanced simultaneously.