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Raihan MT, Tanaka Y, Ishikawa T. Characterization of chloroplastic thioredoxin dependent glutathione peroxidase like protein in Euglena gracilis: biochemical and functional perspectives. Biosci Biotechnol Biochem 2024; 88:1034-1046. [PMID: 38925644 DOI: 10.1093/bbb/zbae087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 06/15/2024] [Indexed: 06/28/2024]
Abstract
Euglena gracilis, a fascinating organism in the scientific realm, exhibits characteristics of both animals and plants. It maintains redox homeostasis through a variety of enzymatic and non-enzymatic antioxidant molecules. In contrast to mammals, Euglena possesses nonselenocysteine glutathione peroxidase homologues that regulate its intracellular pools of reactive oxygen species. In the present study, a full-length cDNA of chloroplastic EgGPXL-1 was isolated and subjected to biochemical and functional characterization. Recombinant EgGPXL-1 scavenged H2O2 and t-BOOH, utilizing thioredoxin as an electron donor rather than glutathione. Despite its monomeric nature, EgGPXL-1 exhibits allosteric behavior with H2O2 as the electron acceptor and follows typical Michaelis-Menten kinetics with t-BOOH. Suppression of EgGPXL-1 gene expression under normal and high-light conditions did not induce critical situations in E. gracilis, suggesting the involvement of compensatory mechanisms in restoring normal conditions.
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Affiliation(s)
- Md Topu Raihan
- The United Graduate School of Agricultural Sciences, Tottori University, Tottori, Japan
| | - Yasuhiro Tanaka
- The United Graduate School of Agricultural Sciences, Tottori University, Tottori, Japan
| | - Takahiro Ishikawa
- The United Graduate School of Agricultural Sciences, Tottori University, Tottori, Japan
- Institute of Agricultural and Life Sciences, Academic Assembly, Shimane University, Matsue, Shimane, Japan
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2
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Zhang Z, Zhang J, Wang C, Chang Y, Han K, Gao Y, Xie J. Characterization of GPX Gene Family in Pepper ( Capsicum annuum L.) under Abiotic Stress and ABA Treatment. Int J Mol Sci 2024; 25:8343. [PMID: 39125911 PMCID: PMC11313330 DOI: 10.3390/ijms25158343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 07/27/2024] [Accepted: 07/27/2024] [Indexed: 08/12/2024] Open
Abstract
Plant glutathione peroxidases (GPXs) are important enzymes for removing reactive oxygen species in plant cells and are closely related to the stress resistance of plants. This study identified the GPX gene family members of pepper (Capsicum annuum L.), "CM333", at the whole-genome level to clarify their expression patterns and enzyme activity changes under abiotic stress and ABA treatment. The results showed that eight CaGPX genes were unevenly distributed across four chromosomes and one scaffold of the pepper genome, and their protein sequences had Cys residues typical of the plant GPX domains. The analysis of collinearity, phylogenetic tree, gene structure, and conserved motifs indicated that the CaGPX gene sequence is conserved, structurally similar, and more closely related to the sequence structure of Arabidopsis. Meanwhile, many cis elements involved in stress, hormones, development, and light response were found in the promoter region of the CaGPX gene. In addition, CaGPX1/4 and CaGPX6 were basically expressed in all tissues, and their expression levels were significantly upregulated under abiotic stress and ABA treatment. Subcellular localization showed that CaGPX1 and CaGPX4 are localized in chloroplasts. Additionally, the variations in glutathione peroxidase activity (GSH-Px) mostly agreed with the variations in gene expression. In summary, the CaGPXs gene may play an important role in the development of peppers and their response to abiotic stress and hormones.
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Affiliation(s)
| | | | | | | | | | | | - Jianming Xie
- College of Horticulture, Gansu Agricultural University, Lanzhou 730070, China; (Z.Z.); (J.Z.); (C.W.); (Y.C.); (K.H.); (Y.G.)
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3
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Raihan MT, Ishikawa T. Biochemical and Functional Profiling of Thioredoxin-Dependent Cytosolic GPX-like Proteins in Euglena gracilis. Biomolecules 2024; 14:765. [PMID: 39062479 PMCID: PMC11275057 DOI: 10.3390/biom14070765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 07/28/2024] Open
Abstract
Unlike plants and animals, the phytoflagellate Euglena gracilis lacks catalase and contains a non-selenocysteine glutathione peroxidase-like protein (EgGPXL), two peroxiredoxins (EgPrx1 and EgPrx4), and one ascorbate peroxidase in the cytosol to maintain reactive oxygen species (ROS) homeostasis. In the present study, the full-length cDNA of three cytosolic EgGPXLs was obtained and further characterized biochemically and functionally. These EgGPXLs used thioredoxin instead of glutathione as an electron donor to reduce the levels of H2O2 and t-BOOH. The specific peroxidase activities of these enzymes for H2O2 and t-BOOH were 1.3 to 4.9 and 0.79 to 3.5 µmol/min/mg protein, respectively. Cytosolic EgGPXLs and EgPrx1/EgPrx4 were silenced simultaneously to investigate the synergistic effects of these genes on the physiological function of E. gracilis. The suppression of cytosolic EgGPXL genes was unable to induce any critical phenomena in Euglena under normal (100 μmol photons m-2 s-1) and high-light conditions (350 μmol photons m-2 s-1) at both autotrophic and heterotrophic states. Unexpectedly, the suppression of EgGPXL genes was able to rescue the EgPrx1/EgPrx4-silenced cell line from a critical situation. This study explored the potential resilience of Euglena to ROS, even with restriction of the cytosolic antioxidant system, indicating the involvement of some compensatory mechanisms.
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Affiliation(s)
- Md Topu Raihan
- The United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori 680-8550, Japan;
| | - Takahiro Ishikawa
- The United Graduate School of Agricultural Sciences, Tottori University, 4-101 Koyama-Minami, Tottori 680-8550, Japan;
- Institute of Agricultural and Life Sciences, Academic Assembly, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan
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Cao X, An J, Zhu S, Feng M, Gang Y, Wen C, Hu B. Nuclear factor E2-associated factor 2 and musculoaponeurotic fibrosarcoma K mediate regulation glutathione peroxidase of Cristaria plicata after microcystin-induced oxidative stress. Comp Biochem Physiol C Toxicol Pharmacol 2023; 273:109742. [PMID: 37689170 DOI: 10.1016/j.cbpc.2023.109742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 08/29/2023] [Accepted: 09/06/2023] [Indexed: 09/11/2023]
Abstract
Nuclear factor E2-associated factor 2 (Nrf2)/Antioxidant Response Element (ARE) signaling pathway is an endogenous antioxidant pathway that protects cells from oxidative damage. This pathway is triggered when aquatic organisms are exposed to environmental toxicants. In this study, CpMafK (musculoaponeurotic fibrosarcoma K of Cristaria plicata) mRNA expression in hepatopancreas and gills were up regulated after Cristaria plicata (C. plicata) was exposed to microcystin (MC), which showed that CpMafK protected C. plicata from MC. After MC treatment and CpNrf2 (Nrf2 of Cristaria plicata) knockdown, the mRNA expression of CpMafK was down regulated. After MC treatment and CpMafK knockdown, the mRNA expression of CpNrf2 was down regulated. Indicating that the expression of CpNrf2 was positively correlated with CpMafK. CpGPx (GPx of Cristaria plicata) mRNA was also down regulated with the down regulation of CpMafK and CpNrf2. CpGPx promoter contains a variety of transcription factor binding sites, including Nrf2, ARE elements, etc. Gel blocking experiments showed that CpNrf2/CpMafK heterodimers were bound to CpGPx promoters in vitro. Dual luciferase reporter assay showed that CpNrf2/CpMafK heterodimer negatively regulated CpGPx promoter in cells. In conclusion, Nrf2 and MafK mediate regulation of GPx play a crucial role in protecting bivalves from MC.
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Affiliation(s)
- Xinying Cao
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
| | - Jinhua An
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
| | - Shanshan Zhu
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
| | - Maolin Feng
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
| | - Yang Gang
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
| | - Chungen Wen
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China.
| | - Baoqing Hu
- College of Life Science, Education Ministry Key Laboratory of Poyang Lake Environment and Resource Utilization, Nanchang University, Nanchang 330031, China
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Bian J, Cui Y, Li J, Guan Y, Tian S, Liu X. Genome-wide analysis of PIN genes in cultivated peanuts (Arachis hypogaea L.): identification, subcellular localization, evolution, and expression patterns. BMC Genomics 2023; 24:629. [PMID: 37865765 PMCID: PMC10590530 DOI: 10.1186/s12864-023-09723-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Accepted: 10/08/2023] [Indexed: 10/23/2023] Open
Abstract
BACKGROUND Auxin is an important hormone in plants and the PIN-FORMED (PIN) genes are essential to auxin distribution in growth and developmental processes of plants. Peanut is an influential cash crop, but research into PIN genes in peanuts remains limited. RESULTS In this study, 16 PIN genes were identified in the genome of cultivated peanut, resolving into four subfamilies. All PIN genes were predicted to be located in the plasma membrane and a subcellular location experiment confirmed this prediction for eight of them. The gene structure, cis-elements in the promoter, and evolutionary relationships were elucidated, facilitating our understanding of peanut PINs and their evolution. In addition, the expression patterns of these PINs in various tissues were analyzed according to a previously published transcriptome dataset and qRT-PCR, which gave us a clear understanding of the temporal and spatial expression of PIN genes in different growth stages and different tissues. The expression trend of homologous genes was similar. AhPIN2A and AhPIN2B exhibited predominant expression in roots. AhPIN1A-1 and AhPIN1B-1 displayed significant upregulation following peg penetration, suggesting a potential close association with peanut pod development. Furthermore, we presented the gene network and gene ontology enrichment of these PINs. Notably, AhABCB19 exhibited a co-expression relationship with AhPIN1A and AhPIN1B-1, with all three genes displaying higher expression levels in peanut pegs and pods. These findings reinforce their potential role in peanut pod development. CONCLUSIONS This study details a comprehensive analysis of PIN genes in cultivated peanuts and lays the foundation for subsequent studies of peanut gene function and phenotype.
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Affiliation(s)
- Jianxin Bian
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China
| | - Yuanyuan Cui
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China
| | - Jihua Li
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China
| | - Yu Guan
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China
| | - Shuhua Tian
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China
| | - Xiaoqin Liu
- Peking University Institute of Advanced Agricultural Sciences, Shandong Laboratory of Advanced Agricultural Sciences in Weifang, Weifang, Shandong, 261325, China.
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Wang S, Sun X, Miao X, Mo F, Liu T, Chen Y. Genome-Wide Analysis and Expression Profiling of the Glutathione Peroxidase-like Enzyme Gene Family in Solanum tuberosum. Int J Mol Sci 2023; 24:11078. [PMID: 37446254 PMCID: PMC10342349 DOI: 10.3390/ijms241311078] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/15/2023] Open
Abstract
Glutathione peroxidase-like enzyme is an important enzymatic antioxidant in plants. It is involved in scavenging reactive oxygen species, which can effectively prevent oxidative damage and improve resistance. GPXL has been studied in many plants but has not been reported in potatoes, the world's fourth-largest food crop. This study identified eight StGPXL genes in potatoes for the first time through genome-wide bioinformatics analysis and further studied the expression patterns of these genes using qRT-PCR. The results showed that the expression of StGPXL1 was significantly upregulated under high-temperature stress, indicating its involvement in potato defense against high-temperature stress, while the expression levels of StGPXL4 and StGPXL5 were significantly downregulated. The expression of StGPXL1, StGPXL2, StGPXL3, and StGPXL6 was significantly upregulated under drought stress, indicating their involvement in potato defense against drought stress. After MeJA hormone treatment, the expression level of StGPXL6 was significantly upregulated, indicating its involvement in the chemical defense mechanism of potatoes. The expression of all StGPXL genes is inhibited under biotic stress, which indicates that GPXL is a multifunctional gene family, which may endow plants with resistance to various stresses. This study will help deepen the understanding of the function of the potato GPXL gene family, provide comprehensive information for the further analysis of the molecular function of the potato GPXL gene family as well as a theoretical basis for potato molecular breeding.
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Affiliation(s)
| | | | | | | | | | - Yue Chen
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Agronomy, Northwest A&F University, Xianyang 712100, China; (S.W.); (X.S.); (X.M.); (F.M.); (T.L.)
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7
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Lian Z, Zhang J, Hao Z, Zhu L, Liu Y, Fang H, Lu Y, Li X, Shi J, Chen J, Cheng T. The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions. Genes (Basel) 2023; 14:genes14040950. [PMID: 37107708 PMCID: PMC10137829 DOI: 10.3390/genes14040950] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 04/12/2023] [Accepted: 04/19/2023] [Indexed: 04/29/2023] Open
Abstract
Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H2O2 homeostasis and normalize plant reaction to abiotic stress conditions. However, the genome-wide identification of the GPX gene family and its responses to environmental stresses, especially salt stress, in Nitraria sibirica, which is a shrub that can survive in saline environments, has not yet been reported. Here, we first report the genome-wide analysis of the GPX gene family in N. sibirica, leading to a total of seven NsGPX genes that are distributed on six of the twelve chromosomes. Phylogenetic analysis showed that NsGPX genes were grouped into four major groups (Group I-IV). Three types of cis-acting elements were identified in the NsGPX promoters, mainly related to hormones and stress response. The quantitative real-time PCR (qRT-PCR) analysis indicated that NsGPX1 and NsGPX3 were significantly up-regulated in stem and leaf, while NsGPX7 transcriptionally in root in response to salt stress. The current study identified a total seven NsGPX genes in N. sibirica via genome-wide analysis, and discovered that NsGPXs may play an important role in response to salt stress. Taken together, our findings provide a basis for further functional studies of NsGPX genes, especially in regarding to the resistance to salt stress of this halophyte plant N. sibirica, eventually aid in the discovery of new methods to restore overtly saline soil.
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Affiliation(s)
- Ziming Lian
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Jingbo Zhang
- Experimental Center of Desert Forestry, Chinese Academy of Forestry, Dengkou 015200, China
| | - Zhaodong Hao
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Liming Zhu
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Yuxin Liu
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
- College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Hao Fang
- College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
| | - Ye Lu
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Xinle Li
- Experimental Center of Desert Forestry, Chinese Academy of Forestry, Dengkou 015200, China
| | - Jisen Shi
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Jinhui Chen
- State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Tielong Cheng
- College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
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Hendrix S, Dard A, Meyer AJ, Reichheld JP. Redox-mediated responses to high temperature in plants. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:2489-2507. [PMID: 36794477 DOI: 10.1093/jxb/erad053] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 02/03/2023] [Indexed: 06/06/2023]
Abstract
As sessile organisms, plants are particularly affected by climate change and will face more frequent and extreme temperature variations in the future. Plants have developed a diverse range of mechanisms allowing them to perceive and respond to these environmental constraints, which requires sophisticated signalling mechanisms. Reactive oxygen species (ROS) are generated in plants exposed to various stress conditions including high temperatures and are presumed to be involved in stress response reactions. The diversity of ROS-generating pathways and the ability of ROS to propagate from cell to cell and to diffuse through cellular compartments and even across membranes between subcellular compartments put them at the centre of signalling pathways. In addition, their capacity to modify the cellular redox status and to modulate functions of target proteins, notably through cysteine oxidation, show their involvement in major stress response transduction pathways. ROS scavenging and thiol reductase systems also participate in the transmission of oxidation-dependent stress signals. In this review, we summarize current knowledge on the functions of ROS and oxidoreductase systems in integrating high temperature signals, towards the activation of stress responses and developmental acclimation mechanisms.
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Affiliation(s)
- Sophie Hendrix
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Friedrich-Ebert-Allee 144, D-53113, Bonn, Germany
- Centre for Environmental Sciences, Hasselt University, Agoralaan Building D, B-3590, Diepenbeek, Belgium
| | - Avilien Dard
- Laboratoire Génome et Développement des Plantes, Université Perpignan Via Domitia, F-66860 Perpignan, France
- Laboratoire Génome et Développement des Plantes, CNRS, F-66860 Perpignan, France
| | - Andreas J Meyer
- Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Friedrich-Ebert-Allee 144, D-53113, Bonn, Germany
| | - Jean-Philippe Reichheld
- Laboratoire Génome et Développement des Plantes, Université Perpignan Via Domitia, F-66860 Perpignan, France
- Laboratoire Génome et Développement des Plantes, CNRS, F-66860 Perpignan, France
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Xu S, Han W, Cao K, Li B, Zheng C, Xie K, Li W, He L. Knockdown of NtCPS2 promotes plant growth and reduces drought tolerance in Nicotiana tabacum. FRONTIERS IN PLANT SCIENCE 2022; 13:968738. [PMID: 36426146 PMCID: PMC9679219 DOI: 10.3389/fpls.2022.968738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 10/04/2022] [Indexed: 06/16/2023]
Abstract
Drought stress is one of the primary environmental stress factors that gravely threaten crop growth, development, and yields. After drought stress, plants can regulate the content and proportion of various hormones to adjust their growth and development, and in some cases to minimize the adverse effects of drought stress. In our previous study, the tobacco cis-abienol synthesis gene (NtCPS2) was found to affect hormone synthesis in tobacco plants. Unfortunately, the role of NtCPS2 genes in the response to abiotic stress has not yet been investigated. Here, we present data supporting the role of NtCPS2 genes in drought stress and the possible underlying molecular mechanisms. NtCPS2 gene expression was induced by polyethylene glycol, high-temperature, and virus treatments. The results of subcellular localization showed that NtCPS2 was localized in the cell membrane. The NtCPS2-knockdown plants exhibited higher levels of gibberellin (GA) content and synthesis pathway genes expression but lower abscisic acid (ABA) content and synthesis pathway genes expression in response to drought stress. In addition, the transgenic tobacco lines showed higher leaf water loss and electrolyte loss, lower soluble protein and reactive oxygen species content (ROS), and lower antioxidant enzyme activity after drought treatment compared to wild type plants (WT). In summary, NtCPS2 positively regulates drought stress tolerance possibly by modulating the ratio of GA to ABA, which was confirmed by evidence of related phenotypic and physiological indicators. This study may provide evidence for the feedback regulation of hormone to abiotic and biotic stresses.
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Affiliation(s)
- Shixiao Xu
- Henan Agricultural University, College Tobacco Science, National Tobacco Cultivation & Physiology & Biochemistry Research Center, Scientific Observation and Experiment Station of Henan, Ministry of Agriculture, Zhengzhou, Henan, China
| | - Wenlong Han
- Henan Agricultural University, College Tobacco Science, National Tobacco Cultivation & Physiology & Biochemistry Research Center, Scientific Observation and Experiment Station of Henan, Ministry of Agriculture, Zhengzhou, Henan, China
| | - Kexin Cao
- Henan Agricultural University, College Tobacco Science, National Tobacco Cultivation & Physiology & Biochemistry Research Center, Scientific Observation and Experiment Station of Henan, Ministry of Agriculture, Zhengzhou, Henan, China
| | - Bo Li
- China Tobacco Zhejiang Industry Co, Ltd., Hangzhou, China
| | - Cong Zheng
- Fujian Tobacco Corporation Nanping Company, Nanping, Fujian, China
| | - Ke Xie
- Fujian Tobacco Corporation Nanping Company, Nanping, Fujian, China
| | - Wei Li
- Fujian Tobacco Corporation Nanping Company, Nanping, Fujian, China
| | - Lingxiao He
- College of Agronomy, Sichuan Agricultural University & Sichuan Engineering Research Center for Crop Strip Intercropping System & Key Laboratory of Crop Ecophysiology and Farming System in Southwest, Ministry of Agriculture, Chengdu, Sichuan, China
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10
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Zhang M, Li W, Li S, Gao J, Gan T, Li Q, Bao L, Jiao F, Su C, Qian Y. Quantitative Proteomics and Functional Characterization Reveal That Glutathione Peroxidases Act as Important Antioxidant Regulators in Mulberry Response to Drought Stress. PLANTS 2022; 11:plants11182350. [PMID: 36145752 PMCID: PMC9500794 DOI: 10.3390/plants11182350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 09/01/2022] [Accepted: 09/05/2022] [Indexed: 11/16/2022]
Abstract
Mulberry (Morus alba L.) has been an economically important food crop for the domesticated silkworm, Bombyx mori, in China for more than 5000 years. However, little is known about the mechanism underlying mulberry response to environmental stress. In this study, quantitative proteomics was applied to elucidate the molecular mechanism of drought response in mulberry. A total of 604 differentially expressed proteins (DEPs) were identified via LC-MS/MS. The proteomic profiles associated with antioxidant enzymes, especially five glutathione peroxidase (GPX) isoforms, as a scavenger of reactive oxygen species (ROS), were systematically increased in the drought-stressed mulberry. This was further confirmed by gene expression and enzymatic activity. Furthermore, overexpression of the GPX isoforms led to enhancements in both antioxidant system and ROS-scavenging capacity, and greater tolerance to drought stress in transgenic plants. Taken together, these results indicated that GPX-based antioxidant enzymes play an important role in modulating mulberry response to drought stress, and higher levels of GPX can improve drought tolerance through enhancing the capacity of the antioxidant system for ROS scavenging.
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Affiliation(s)
- Minjuan Zhang
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Wenqiang Li
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling 712100, China
| | - Shuaijun Li
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling 712100, China
| | - Junru Gao
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling 712100, China
| | - Tiantian Gan
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Qinying Li
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling 712100, China
| | - Lijun Bao
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Feng Jiao
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
| | - Chao Su
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
- Correspondence: (C.S.); (Y.Q.)
| | - Yonghua Qian
- The Sericultural and Silk Research Institute, College of Animal Science and Technology, Northwest A&F University, Yangling 712100, China
- Correspondence: (C.S.); (Y.Q.)
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11
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Bela K, Riyazuddin R, Csiszár J. Plant Glutathione Peroxidases: Non-Heme Peroxidases with Large Functional Flexibility as a Core Component of ROS-Processing Mechanisms and Signalling. Antioxidants (Basel) 2022; 11:antiox11081624. [PMID: 36009343 PMCID: PMC9404953 DOI: 10.3390/antiox11081624] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/16/2022] [Accepted: 08/18/2022] [Indexed: 11/29/2022] Open
Abstract
Glutathione peroxidases (GPXs) are non-heme peroxidases catalyzing the reduction of H2O2 or organic hydroperoxides to water or corresponding alcohols using glutathione (GSH) or thioredoxin (TRX) as a reducing agent. In contrast to animal GPXs, the plant enzymes are non-seleno monomeric proteins that generally utilize TRX more effectively than GSH but can be a putative link between the two main redox systems. Because of the substantial differences compared to non-plant GPXs, use of the GPX-like (GPXL) name was suggested for Arabidopsis enzymes. GPX(L)s not only can protect cells from stress-induced oxidative damages but are crucial components of plant development and growth. Due to fine-tuning the H2O2 metabolism and redox homeostasis, they are involved in the whole life cycle even under normal growth conditions. Significantly new mechanisms were discovered related to their transcriptional, post-transcriptional and post-translational modifications by describing gene regulatory networks, interacting microRNA families, or identifying Lys decrotonylation in enzyme activation. Their involvement in epigenetic mechanisms was evidenced. Detailed genetic, evolutionary, and bio-chemical characterization, and comparison of the main functions of GPXs, demonstrated their species-specific roles. The multisided involvement of GPX(L)s in the regulation of the entire plant life ensure that their significance will be more widely recognized and applied in the future.
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Affiliation(s)
- Krisztina Bela
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52., H-6726 Szeged, Hungary
| | - Riyazuddin Riyazuddin
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52., H-6726 Szeged, Hungary
- Institute of Plant Biology, Biological Research Centre, Temesvári krt. 62., H-6726 Szeged, Hungary
| | - Jolán Csiszár
- Department of Plant Biology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52., H-6726 Szeged, Hungary
- Correspondence:
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12
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Mallikarjuna MG, Sharma R, Veeraya P, Tyagi A, Rao AR, Hirenallur Chandappa L, Chinnusamy V. Evolutionary and functional characterisation of glutathione peroxidases showed splicing mediated stress responses in Maize. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 178:40-54. [PMID: 35276595 DOI: 10.1016/j.plaphy.2022.02.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 02/02/2022] [Accepted: 02/27/2022] [Indexed: 06/14/2023]
Abstract
Maize (Zea mays L) is an important cereal with extensive adaptability and multifaceted usages. However, various abiotic and biotic stresses limit the productivity of maize across the globe. Exposure of plant to stresses disturb the balance between reactive oxygen species (ROS) production and scavenging, which subsequently increases cellular damage and death of plants. Tolerant genotypes have evolved higher output of scavenging antioxidative defence compounds (ADCs) during stresses as one of the protective mechanisms. The glutathione peroxidases (GPXs) are the broad class of ADCs family. The plant GPXs catalyse the reduction of hydrogen peroxide (H2O2), lipid hydroperoxides and organic hydroperoxides to the corresponding alcohol, and facilitate the regulation of stress tolerance mechanisms. The present investigation was framed to study the maize GPXs using evolutionary and functional analyses. Seven GPX genes with thirteen splice-variants and sixty-three types of cis-acting elements were identified through whole-genome scanning in maize. Evolutionary analysis of GPXs in monocots and dicots revealed mixed and lineage-specific grouping patterns in phylogeny. The expression of ZmGPX splice variants was studied in drought and waterlogging tolerant (L1621701) and sensitive (PML10) genotypes in root and shoot tissues. Further, the differential expression of splice variants of ZmGPX1, ZmGPX3, ZmGPX6 and ZmGPX7 and regulatory network analysis suggested the splicing and regulatory elements mediated stress responses. The present investigation suggests targeting the splicing machinery of GPXs as an approach to enhance the stress tolerance in maize.
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Affiliation(s)
| | - Rinku Sharma
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Palanisamy Veeraya
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Akshita Tyagi
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | | | | | - Viswanathan Chinnusamy
- Division of Plant Physiology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
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Verma D, Upadhyay SK, Singh K. Characterization of APX and APX-R gene family in Brassica juncea and B. rapa for tolerance against abiotic stresses. PLANT CELL REPORTS 2022; 41:571-592. [PMID: 34115169 DOI: 10.1007/s00299-021-02726-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 05/31/2021] [Indexed: 06/12/2023]
Abstract
APX and APX-R gene families were identified and characterized in two important oilseed species of Brassica. Gene expression under abiotic stress conditions, recombinant protein expression, and analysis further divulged their drought, heat, and salt-responsive behavior. Ascorbate peroxidases (APX) are heme-dependent enzymes that rid the cells of H2O2 and regulate diverse biological processes. In the present study, we performed APX gene family characterization in two Brassica sp. (B. juncea and B. rapa) as these are commercially important oilseed crops and affected severely by abiotic stresses. We identified 16 BjuAPX and 9 BraAPX genes and 2 APX-R genes each in B. juncea and B. rapa genomes, respectively. Phylogenetic analysis divided the APX genes into five distinct clades, which exhibited conservation in the gene structure, motif organization, and sub-cellular location within the clade. Structural analysis of APX and APX-R proteins revealed the amino acid substitutions in conserved domains of APX-R proteins. The expression profiling of BjuAPX and BraAPX genes showed that 3 BjuAPX, 7BraAPX, and 2 BraAPX-R genes were drought and heat responsive. Notably, BjuAAPX1a, BjuAPX1d, BjuAAPX6, BraAAPX1a, BraAAPX2, and BraAAPX3b showed high expression levels in RT-qPCR. Cis-regulatory elements in APX and APX-R gene promoters supported the differential behavior of these genes. Further, two stress-responsive genes BjuAPX1d and BraAAPX2 were cloned, characterized, and their roles were validated under heat, drought, salt, and cold stress in bacterial expression system. This study for the first time reports the presence of APX activity in dimeric and LMW form of purified BraAAPX2 protein. The study may help pave way for developing abiotic stress-tolerant Brassica crops.
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Affiliation(s)
- Deepika Verma
- Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh, 160014, India
| | | | - Kashmir Singh
- Department of Biotechnology, BMS Block I, Panjab University, Sector 25, Chandigarh, 160014, India.
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Aleem M, Aleem S, Sharif I, Wu Z, Aleem M, Tahir A, Atif RM, Cheema HMN, Shakeel A, Lei S, Yu D, Wang H, Kaushik P, Alyemeni MN, Bhat JA, Ahmad P. Characterization of SOD and GPX Gene Families in the Soybeans in Response to Drought and Salinity Stresses. Antioxidants (Basel) 2022; 11:antiox11030460. [PMID: 35326109 PMCID: PMC8944523 DOI: 10.3390/antiox11030460] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 02/05/2022] [Accepted: 02/06/2022] [Indexed: 12/31/2022] Open
Abstract
Plant stresses causing accumulation of reactive oxidative species (ROS) are scavenged by effective antioxidant defense systems. Therefore, the present study performed genome-wide identification of superoxide dismutase (SOD) and glutathione peroxidase (GPX) gene families in cultivated and wild soybeans, and 11 other legume species. We identified a total of 101 and 95 genes of SOD and GPX, respectively, across thirteen legume species. The highest numbers of SODs and GPXs were identified in cultivated (Glycine max) and wild (Glycine soja). A comparative phylogenetic study revealed highest homology among the SODs and GPXs of cultivated and wild soybeans relative to other legumes. The exon/intron structure, motif and synteny blocks were conserved in both soybean species. According to Ka/Ks, purifying the selection played the major evolutionary role in these gene families, and segmental duplication are major driving force for SODs and GPXs expansion. In addition, the qRT-PCR analysis of the G. max and G. soja SOD and GPX genes revealed significant differential expression of these genes in response to oxidative, drought and salinity stresses in root tissue. In conclusion, our study provides new insights for the evolution of SOD and GPX gene families in legumes, and provides resources for further functional characterization of these genes for multiple stresses.
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Affiliation(s)
- Muqadas Aleem
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
- Center for Advanced Studies in Agriculture and Food Security (CAS-AFS), University of Agriculture, Faisalabad 38040, Pakistan;
| | - Saba Aleem
- Barani Agricultural Research Station, Fatehjang 43350, Pakistan;
| | - Iram Sharif
- Cotton Research Station, Ayub Agricultural Research Institute, Faisalabad 38040, Pakistan;
| | - Zhiyi Wu
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
| | - Maida Aleem
- Department of Botany, University of Agriculture, Faisalabad 38040, Pakistan;
| | - Ammara Tahir
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
| | - Rana Muhammad Atif
- Center for Advanced Studies in Agriculture and Food Security (CAS-AFS), University of Agriculture, Faisalabad 38040, Pakistan;
| | - Hafiza Masooma Naseer Cheema
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan; (H.M.N.C.); (A.S.)
| | - Amir Shakeel
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan; (H.M.N.C.); (A.S.)
| | - Sun Lei
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
| | - Deyue Yu
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
- Correspondence: (D.Y.); (H.W.); (J.A.B.); (P.A.)
| | - Hui Wang
- National Center for Soybean Improvement, State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; (M.A.); (Z.W.); (A.T.); (S.L.)
- Correspondence: (D.Y.); (H.W.); (J.A.B.); (P.A.)
| | - Prashant Kaushik
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, 46022 Valencia, Spain;
| | - Mohammed Nasser Alyemeni
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh 12546, Saudi Arabia;
| | - Javaid Akhter Bhat
- International Genome Center, Jiangsu University, Zhenjiang 212013, China
- Correspondence: (D.Y.); (H.W.); (J.A.B.); (P.A.)
| | - Parvaiz Ahmad
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh 12546, Saudi Arabia;
- Correspondence: (D.Y.); (H.W.); (J.A.B.); (P.A.)
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Wang X, Liu X, An YQC, Zhang H, Meng D, Jin Y, Huo H, Yu L, Zhang J. Identification of Glutathione Peroxidase Gene Family in Ricinus communis and Functional Characterization of RcGPX4 in Cold Tolerance. FRONTIERS IN PLANT SCIENCE 2021; 12:707127. [PMID: 34804079 PMCID: PMC8602854 DOI: 10.3389/fpls.2021.707127] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Accepted: 09/30/2021] [Indexed: 06/13/2023]
Abstract
Glutathione peroxidases (GPXs) protect cells against damage caused by reactive oxygen species (ROS) and play key roles in regulating many biological processes. Here, five GPXs were identified in the Ricinus communis genome. Phylogenetic analysis displayed that the GPXs were categorized into five groups. Conserved domain and gene structure analyses showed that the GPXs from different plant species harbored four highly similar motifs and conserved exon-intron arrangement patterns, indicating that their structure and function may have been conserved during evolution. Several abiotic stresses and hormone-responsive cis-acting elements existed in the promoters of the RcGPXs. The expression profiles indicated that the RcGPXs varied substantially, and some RcGPXs were coordinately regulated under abiotic stresses. Overexpression of RcGPX4 in Arabidopsis enhanced cold tolerance at seed germination but reduced freezing tolerance at seedlings. The expression of abscisic acid (ABA) signaling genes (AtABI4 and AtABI5), ABA catabolism genes (AtCYP707A1 and AtCYP707A2), gibberellin acid (GA) catabolism gene (AtGA2ox7), and cytokinin (CTK)-inducible gene (AtARR6) was regulated in the seeds of transgenic lines under cold stress. Overexpression of RcGPX4 can disturb the hydrogen peroxide (H2O2) homeostasis through the modulation of some antioxidant enzymes and compounds involved in the GSH-ascorbate cycle in transgenic plants. Additionally, RcGPX4 depended on the MAPK3-ICE1-C-repeat-binding factor (CBF)-COR signal transduction pathway and ABA-dependent pathway to negatively regulate the freezing tolerance of transgenic plants. This study provides valuable information for understanding the potential function of RcGPXs in regulating the abiotic stress responses of castor beans.
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Affiliation(s)
- Xiaoyu Wang
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Xuming Liu
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Yong-qiang Charles An
- U.S. Department of Agriculture-Agricultural Research Service, Plant Genetics Research Unit, Donald Danforth Plant Science Center, Saint Louis, MO, United States
| | - Hongyu Zhang
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Di Meng
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Yanan Jin
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Hongyan Huo
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
| | - Lili Yu
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
| | - Jixing Zhang
- College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao, China
- Horqin Plant Stress Biology Research Institute of Inner Mongolia Minzu University, Tongliao, China
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Genome-Wide Characterization of Glutathione Peroxidase (GPX) Gene Family in Rapeseed ( Brassica napus L.) Revealed Their Role in Multiple Abiotic Stress Response and Hormone Signaling. Antioxidants (Basel) 2021; 10:antiox10091481. [PMID: 34573113 PMCID: PMC8472808 DOI: 10.3390/antiox10091481] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 09/10/2021] [Accepted: 09/15/2021] [Indexed: 11/17/2022] Open
Abstract
Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H2O2 homeostasis and normalize plant reaction to abiotic stress conditions. To understand the major roles of the GPX gene family in rapeseed (Brassica napus L.), for the first time, a genome-wide study identified 25 BnGPX genes in the rapeseed genome. The phylogenetic analysis discovered that GPX genes were grouped into four major groups (Group I-Group IV) from rapeseed and three closely interrelated plant species. The universal investigation uncovered that the BnGPXs gene experienced segmental duplications and positive selection pressure. Gene structure and motifs examination recommended that most of the BnGPX genes demonstrated a comparatively well-maintained exon-intron and motifs arrangement within the identical group. Likewise, we recognized five hormones-, four stress-, and numerous light-reactive cis-elements in the promoters of BnGPXs. Five putative bna-miRNAs from two families were also prophesied, targeting six BnGPXs genes. Gene ontology annotation results proved the main role of BnGPXs in antioxidant defense systems, ROS, and response to stress stimulus. Several BnGPXs genes revealed boosted expression profiles in many developmental tissues/organs, i.e., root, seed, leaf, stem, flower, and silique. The qRT-PCR based expression profiling exhibited that two genes (BnGPX21 and BnGPX23) were suggestively up-regulated against different hormones (ABA, IAA, and MeJA) and abiotic stress (salinity, cold, waterlogging, and drought) treatments. In short, our discoveries provide a basis for additional functional studies on the BnGPX genes in future rapeseed breeding programs.
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17
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Song W, Xin S, He M, Pfeiffer S, Cao A, Li H, Schick JA, Jin X. Evolutionary and functional analyses demonstrate conserved ferroptosis protection by Arabidopsis GPXs in mammalian cells. FASEB J 2021; 35:e21550. [PMID: 33960023 DOI: 10.1096/fj.202000856r] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Revised: 02/27/2021] [Accepted: 03/08/2021] [Indexed: 01/14/2023]
Abstract
Species have evolved unique mechanisms to combat the effects of oxidative stress inside cells. A particularly devastating consequence of an unhindered oxidation of membrane lipids in the presence of iron results in cell death, known as ferroptosis. Hallmarks of ferroptosis, including peroxidation of polyunsaturated fatty acids, are conserved among animals and plants, however, early divergence of an ancestral mammalian GPX4 (mGPX4) has complicated our understanding of mechanistic similarities between species. To this end, we performed a comprehensive phylogenetic analysis and identified that orthologous Arabidopsis GPXs (AtGPXs) are more highly related to mGPX4 than mGPX4 is to other mammalian GPXs. This high degree of conservation suggested that experimental substitution may be possible. We, therefore, ectopically expressed AtGPX1-8 in ferroptosis-sensitive mouse fibroblasts. This substitution experiment revealed highest protection against ferroptosis induction by AtGPX5, as well as moderate protection by AtGPX2, -7, and -8. Further analysis of these cells revealed substantial abatement of lipid peroxidation in response to pharmacological challenge. The results suggest that the presence of ancestral GPX4 resulted in later functional divergence and specialization of GPXs in plants. The results also challenge a strict requirement for selenocysteine activity and suggest thioredoxin as a potent parallel antioxidant system in both plants and mammals.
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Affiliation(s)
- Wangyang Song
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal University, Haikou, China.,Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi, China
| | - Shan Xin
- Institute of Molecular Toxicology and Pharmacology, Genetics and Cellular Engineering Group, Helmholtz Zentrum Munich, Neuherberg, Germany
| | - Meng He
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal University, Haikou, China
| | - Susanne Pfeiffer
- Institute of Molecular Toxicology and Pharmacology, Genetics and Cellular Engineering Group, Helmholtz Zentrum Munich, Neuherberg, Germany
| | - Aiping Cao
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi, China
| | - Hongbin Li
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi, China
| | - Joel A Schick
- Institute of Molecular Toxicology and Pharmacology, Genetics and Cellular Engineering Group, Helmholtz Zentrum Munich, Neuherberg, Germany
| | - Xiang Jin
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal University, Haikou, China.,Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi, China
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Martínez C, Valenzuela JL, Jamilena M. Genetic and Pre- and Postharvest Factors Influencing the Content of Antioxidants in Cucurbit Crops. Antioxidants (Basel) 2021; 10:894. [PMID: 34199481 PMCID: PMC8228042 DOI: 10.3390/antiox10060894] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 05/28/2021] [Accepted: 05/29/2021] [Indexed: 11/16/2022] Open
Abstract
Cucurbitaceae is one of the most economically important plant families, and includes some worldwide cultivated species like cucumber, melons, and squashes, and some regionally cultivated and feral species that contribute to the human diet. For centuries, cucurbits have been appreciated because of their nutritional value and, in traditional medicine, because of their ability to alleviate certain ailments. Several studies have demonstrated the remarkable contents of valuable compounds in cucurbits, including antioxidants such as polyphenols, flavonoids, and carotenoids, but also tannins and terpenoids, which are abundant. This antioxidant power is beneficial for human health, but also in facing plant diseases and abiotic stresses. This review brings together data on the antioxidant properties of cucurbit species, addressing the genetic and pre- and postharvest factors that regulate the antioxidant content in different plant organs. Environmental conditions, management, storage, and pre- and postharvest treatments influencing the biosynthesis and activity of antioxidants, together with the biodiversity of this family, are determinant in improving the antioxidant potential of this group of species. Plant breeding, as well as the development of innovative biotechnological approaches, is also leading to new possibilities for exploiting cucurbits as functional products.
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Affiliation(s)
| | | | - Manuel Jamilena
- Department of Biology and Geology, Agrifood Campus of International Excellence (CeiA3) and CIAIMBITAL Reseach Center, University of Almería, 04120 Almería, Spain; (C.M.); (J.L.V.)
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Wang M, Kou J, Wang C, Yu X, Xie X, Pang X. Curcumin inhibits APOE4-induced injury by activating peroxisome proliferator-activated receptor-γ (PPARγ) in SH-SY5Y cells. IRANIAN JOURNAL OF BASIC MEDICAL SCIENCES 2021; 23:1576-1583. [PMID: 33489032 PMCID: PMC7811813 DOI: 10.22038/ijbms.2020.47184.10858] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Objective(s): The human apolipoprotein E4 (APOE4) is associated with various brain injuries and neurodegenerative changes. Curcumin is an active ingredient isolated from the root of turmeric and is believed to have therapeutic effects on neurodegenerative diseases. The aim of this study was to investigate the effects of curcumin on APOE4-induced neurological damage and explore its molecular mechanisms. Materials and Methods: SH-SY5Y cells were pretreated with curcumin for 24 hr and transfected with human APOE4 gene using Lipofectamine 2000. Then, the effect of curcumin on the transfected cells was detected by ELISA, immunofluorescence staining and Western blot. Results: The production or expression of proinflammatory cytokines and proteins, including tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), nitric oxide (NO), inducible nitric oxide synthase (iNOS) and cyclooxygenase-2 (COX-2) was significantly increased in SH-SY5Y cells transfected with APOE4, and curcumin inhibited APOE4-induced cellular inflammatory damage. Western blot analysis showed that, after transfection with APOE4, the expression of total nuclear factor kappa B (NF-κB) p65 and p-NF-κB p65 in the nucleus was increased, and curcumin inhibited the nuclear translocation of p65. The overexpression of APOE4 inhibited the expression of peroxisome proliferator-activated receptor-γ (PPARγ), whereas curcumin reversed and increased the expression of PPARγ protein. Down-regulating PPAR-γ with the inhibitor GW9662 and the shPPARγ gene confirmed that the NF-κB signaling pathway was inhibited by PPARγ. Conclusion: This study suggests that APOE4 overexpression can induce cellular inflammatory damage, and pretreatment of curcumin could exert an anti-inflammatory effect by upregulating the expression of PPARγ to inhibit the activation of NF-κB signaling pathway.
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Affiliation(s)
- Minghui Wang
- Pharmaceutical Institute, Pharmaceutical College of Henan University, Kaifeng 475004, China
| | - Jiejian Kou
- Pharmaceutical Institute, Pharmaceutical College of Henan University, Kaifeng 475004, China
| | - Chunli Wang
- Pharmaceutical Institute, Pharmaceutical College of Henan University, Kaifeng 475004, China
| | - Xiuying Yu
- Agricultural College of Inner Mongolia University for Nationalities, Tongliao, 028043, China
| | - Xinmei Xie
- Pharmaceutical Institute, Pharmaceutical College of Henan University, Kaifeng 475004, China
| | - Xiaobin Pang
- Pharmaceutical Institute, Pharmaceutical College of Henan University, Kaifeng 475004, China
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20
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Billah M, Li F, Yang Z. Regulatory Network of Cotton Genes in Response to Salt, Drought and Wilt Diseases ( Verticillium and Fusarium): Progress and Perspective. FRONTIERS IN PLANT SCIENCE 2021; 12:759245. [PMID: 34912357 PMCID: PMC8666531 DOI: 10.3389/fpls.2021.759245] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 10/13/2021] [Indexed: 05/11/2023]
Abstract
In environmental conditions, crop plants are extremely affected by multiple abiotic stresses including salinity, drought, heat, and cold, as well as several biotic stresses such as pests and pathogens. However, salinity, drought, and wilt diseases (e.g., Fusarium and Verticillium) are considered the most destructive environmental stresses to cotton plants. These cause severe growth interruption and yield loss of cotton. Since cotton crops are central contributors to total worldwide fiber production, and also important for oilseed crops, it is essential to improve stress tolerant cultivars to secure future sustainable crop production under adverse environments. Plants have evolved complex mechanisms to respond and acclimate to adverse stress conditions at both physiological and molecular levels. Recent progresses in molecular genetics have delivered new insights into the regulatory network system of plant genes, which generally includes defense of cell membranes and proteins, signaling cascades and transcriptional control, and ion uptake and transport and their relevant biochemical pathways and signal factors. In this review, we mainly summarize recent progress concerning several resistance-related genes of cotton plants in response to abiotic (salt and drought) and biotic (Fusarium and Verticillium wilt) stresses and classify them according to their molecular functions to better understand the genetic network. Moreover, this review proposes that studies of stress related genes will advance the security of cotton yield and production under a changing climate and that these genes should be incorporated in the development of cotton tolerant to salt, drought, and fungal wilt diseases (Verticillium and Fusarium).
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Affiliation(s)
- Masum Billah
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Fuguang Li
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- *Correspondence: Fuguang Li,
| | - Zhaoen Yang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, China
- Zhaoen Yang,
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Jin P, Wang Y, Liang Z, Yuan M, Li H, Du Q. Efficient bioconversion of high-concentration d-fructose into d-mannose by a novel N-acyl- d-glucosamine 2-epimerase from Thermobifida halotolerans. Catal Sci Technol 2021. [DOI: 10.1039/d0cy01915a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
A novel N-acyl-d-glucosamine 2-epimerase ThMI exhibits high mannose isomerase activity with a maximum bioconversion ratio of 35.8% in 500 g L−1d-fructose. Whole-cell biocatalyst produced 157 g L−1d-mannose from 500 g L−1d-fructose in 60 min.
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Affiliation(s)
- Peng Jin
- College of Agricultural and Food Sciences
- Zhejiang A & F University
- Hangzhou
- China
| | - Yuanyuan Wang
- College of Agricultural and Food Sciences
- Zhejiang A & F University
- Hangzhou
- China
| | - Zhengang Liang
- Technology Center of Haikou Customs District China
- Haikou 570311
- China
| | - Miao Yuan
- College of Agricultural and Food Sciences
- Zhejiang A & F University
- Hangzhou
- China
| | - Hua Li
- Institute of Microbial Engineering
- Henan University
- Kaifeng 475001
- China
| | - Qizhen Du
- College of Agricultural and Food Sciences
- Zhejiang A & F University
- Hangzhou
- China
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22
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Liu S, Yang Q, Mao J, Bai M, Zhou J, Han X, Mao J. Feedback inhibition of the prephenate dehydratase from Saccharomyces cerevisiae and its mutation in huangjiu (Chinese rice wine) yeast. Lebensm Wiss Technol 2020. [DOI: 10.1016/j.lwt.2020.110040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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23
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Rosemary extract reverses oxidative stress through activation of Nrf2 signaling pathway in hamsters fed on high fat diet and HepG2 cells. J Funct Foods 2020. [DOI: 10.1016/j.jff.2020.104136] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
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Genome-wide analysis and metabolic profiling unveil the role of peroxidase CsGPX3 in theaflavin production in black tea processing. Food Res Int 2020; 137:109677. [PMID: 33233254 DOI: 10.1016/j.foodres.2020.109677] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 08/29/2020] [Accepted: 09/06/2020] [Indexed: 01/20/2023]
Abstract
Plucked tea leaves can be processed into black tea (Camellia sinensis), which is rich in health-promoting molecules, including flavonoid antioxidants. During black tea processing, theaflavins (TFs) and thearubigins (TRs) are generated via the successive oxidation of catechins by endogenous polyphenol oxidase (PPO)- or peroxidase (POD)-mediated reactions. This process must be well controlled to achieve the proper TF/TR ratio, which is an important quality parameter of the tea beverage. However, little is known about the POD/PPO catalyzed TF formation process at the molecular genetic level. Here, we identified and characterized the POD genes responsible for TF production in tea. Genome-wide analysis of POD/PPO family genes, metabolite profiling, and expression analysis of PPO/POD genes in tea leaves enabled us to select several PPO/POD genes potentially involved in TF production. Differential gene expression in plant tissues and enzyme activity in several tea varieties traditionally used for processing of various beverage types indicate that black tea processing primarily depends on PPO/POD activity. Among these POD/PPO genes, the POD CsGPX3 is involved in the generation of TFs during black tea processing. The capacity of PPO/POD-catalysed TF production is potentially used for controlling catechin oxidation during black tea processing and could be used to create molecular markers for breeding of tea plant varieties suitable for the production of high-quality black tea beverages.
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25
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Fan FF, Liu F, Yang X, Wan H, Kang Y. Global analysis of expression profile of members of DnaJ gene families involved in capsaicinoids synthesis in pepper (Capsicum annuum L). BMC PLANT BIOLOGY 2020; 20:326. [PMID: 32646388 PMCID: PMC7350186 DOI: 10.1186/s12870-020-02476-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2019] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND The DnaJ proteins play critical roles in plant development and stress responses. Recently, seventy-six DnaJ genes were identified through a comprehensive bioinformatics analysis in the pepper genome. However, there were no reports on understanding of phylogenetic relationships and diverse expression profile of pepper DnaJ genes to date. Herein, we performed the systemic analysis of the phylogenetic relationships and expression profile of pepper DnaJ genes in different tissues and in response to both abiotic stress and plant hormones. RESULTS Phylogenetic analysis showed that all the pepper DnaJ genes were grouped into 7 sub-families (sub-family I, II, III, IV, V, VI and VII) according to sequence homology. The expression of pepper DnaJs in different tissues revealed that about 38% (29/76) of pepper DnaJs were expressed in at least one tissue. The results demonstrate the potentially critical role of DnaJs in pepper growth and development. In addition, to gain insight into the expression difference of pepper DnaJ genes in placenta between pungent and non-pungent, their expression patterns were also analyzed using RNA-seq data and qRT-PCR. Comparison analysis revealed that eight genes presented distinct expression profiles in pungent and non-pungent pepper. The CaDnaJs co-expressed with genes involved in capsaicinoids synthesis during placenta development. What is more, our study exposed the fact that these eight DnaJ genes were probably regulated by stress (heat, drought and salt), and were also regulated by plant hormones (ABA, GA3, MeJA and SA). CONCLUSIONS In summary, these results showed that some DnaJ genes expressed in placenta may be involved in plant response to abiotic stress during biosynthesis of compounds related with pungency. The study provides wide insights to the expression profiles of pepper DanJ genes and contributes to our knowledge about the function of DnaJ genes in pepper.
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Affiliation(s)
- Fang Fei Fan
- College of Horticulture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Fawan Liu
- Horticultural Research Institute, Yunnan Academy of Agricultural Science, Kunming, 650231, PR China
| | - Xian Yang
- College of Horticulture, South China Agricultural University, Guangzhou, 510642, PR China
| | - Hongjian Wan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, PR China.
- China-Australia Research Centre for Crop Improvement, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
| | - Yunyan Kang
- College of Horticulture, South China Agricultural University, Guangzhou, 510642, PR China.
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Genome-wide analysis and comparison of the DNA-binding one zinc finger gene family in diploid and tetraploid cotton (Gossypium). PLoS One 2020; 15:e0235317. [PMID: 32598401 PMCID: PMC7323982 DOI: 10.1371/journal.pone.0235317] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 06/09/2020] [Indexed: 01/14/2023] Open
Abstract
The Dof (DNA-binding one zinc finger) transcription factor family is a representative of plant-specific classes of transcription factors. In this study, we performed a genome-wide screening and characterization of the Dof gene family within two tetraploid species Gossypium barbadense, Gossypium hirsutum, and two diploid species Gossypium arboreum, Gossypium raimondii. 115, 116, 55 and 56 Dof genes were identified respectively and all of the genes contain a sequence encoding the Dof DNA-binding domain. Those genes were unevenly distributed across 13/26 chromosomes of the cotton. Genome comparison revealed that segmental duplication may have played crucial roles in the expansion of the cotton Dof gene family, and tandem duplication also played a minor role. Analysis of RNA-Seq data indicated that cotton Dof gene expression levels varied across different tissues and in response to different abiotic stress. Overall, our results could provide valuable information for better understanding the evolution of cotton Dof genes, and lays a foundation for future investigation in cotton.
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A Pt(IV)-based mononitro-naphthalimide conjugate with minimized side-effects targeting DNA damage response via a dual-DNA-damage approach to overcome cisplatin resistance. Bioorg Chem 2020; 101:104011. [PMID: 32599363 DOI: 10.1016/j.bioorg.2020.104011] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2020] [Revised: 06/08/2020] [Accepted: 06/10/2020] [Indexed: 01/09/2023]
Abstract
Platinum(Pt)(II) drugs and new Pt(IV) agents behave the dysregulation of apoptosis as the result of DNA damage repair and thus, are less effective in the treatment of resistant tumors. Herein, mononitro-naphthalimide Pt(IV) complex 10b with minimized side-effects was reported targeting DNA damage response via a dual-DNA-damage approach to overcome cisplatin resistance. 10b displayed remarkably evaluated antitumor (70.10%) activities in vivo compared to that of cisplatin (52.88%). The highest fold increase (FI) (5.08) for A549cisR cells and the lowest (0.72) for A549 indicated 10b preferentially accumulated in resistant cell lines. The possible molecular mechanism indicates that 10b targets resistant cells in a totally different way from the existing Pt drugs. The cell accumulation and the Pt levels in genomic DNA from 10b is almost 5 folds higher than that of cisplatin and oxaliplatin, indicating the naphthalimide moiety in 10b exhibits preferentially DNA damage. Using 5'-dGMP as a DNA model, the DNA-binding properties of 10b (1 mM) with 5'-dGMP (3 mM) in the presence of ascorbic acid (5 mM) deduced that 10b was generated by the combination of cisplatin with 5'-dGMP after reduction by ascorbic acid. Moreover, 10b promoted the expression of p53 gene and protein more effectively than cisplatin, leading to the increased anticancer activity. The up-regulated γH2A.X and down-regulated RAD51 indicates that 10b not only induced severe DNA damage but also inhibited the DNA damage repair, thus resulting in its higher cytotoxicity in comparison to that of cisplatin. Their preferential accumulation in cancer cells (SMMC-7721) compared to the matched normal cells (HL-7702 cells) demonstrated that they were potentially safe for clinical therapeutic use. In addition, the higher therapeutic indices of 10b for 4T1 cells in vivo indicated that naphthalimide-Pt(IV) conjugates behaved a vital function in the treatment of breast cancer. For the first time, our study implies a significant strategy for Pt drugs to treat resistance cancer targeting DNA damage repair via dual DNA damage mechanism in a totally new field.
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Wu M, Li Z, Wang J. Transcriptional analyses reveal the molecular mechanism governing shade tolerance in the invasive plant Solidago canadensis. Ecol Evol 2020; 10:4391-4406. [PMID: 32489605 PMCID: PMC7246212 DOI: 10.1002/ece3.6206] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 02/26/2020] [Accepted: 02/28/2020] [Indexed: 12/27/2022] Open
Abstract
Solidago canadensis is an invasive plant that is capable of adapting to variable light conditions. To elucidate the shade tolerance mechanism in S. canadensis at the molecular level, transcriptome analyses were performed for leaves growing under natural light and three shade level conditions. Many differentially expressed genes (DEGs) were found in the comparative analysis, including those involved in photosynthesis, antioxidant, and secondary metabolism of phenol- and flavonoid-related pathways. Most genes encoding proteins involved in photosynthesis, such as photosystem I reaction center subunit (Psa), photosystem II core complex protein (Psb), and light-harvesting chlorophyll protein (Lhca and Lhcb), and reactive oxygen species (ROS) scavenging-related enzymes, such as superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT), were upregulated with the shade levels. Furthermore, most of the DEGs related to secondary metabolite synthesis were also upregulated in the shade conditions. Our study indicates that S. canadensis can respond to shade stress by modulating the expression of several photosynthesis-related, free radical scavenging-related, and secondary metabolism-related genes; thus, this species has the ability to adapt to different light conditions.
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Affiliation(s)
- Miao Wu
- College of Life SciencesWuhan UniversityWuhanChina
| | - Zeyu Li
- College of Life SciencesWuhan UniversityWuhanChina
| | - Jianbo Wang
- College of Life SciencesWuhan UniversityWuhanChina
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Ma J, Li Y, Li L, Yue K, Liu H, Wang J, Xi Z, Shi M, Zhao S, Ma Q, Liu S, Guo S, Liu J, Hou L, Wang C, Wang PG, Tian Z, Xie S. A Polyamine-Based Dinitro-Naphthalimide Conjugate as Substrates for Polyamine Transporters Preferentially Accumulates in Cancer Cells and Minimizes Side Effects in vitro and in vivo. Front Chem 2020; 8:166. [PMID: 32328475 PMCID: PMC7160362 DOI: 10.3389/fchem.2020.00166] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 02/25/2020] [Indexed: 01/10/2023] Open
Abstract
Naphthalimides, such as amonafide and mitonafide in clinical trials, have been developed as antitumor agents for orthotopic tumor. However, the serious side effects in cancer patients limit their applications. Herein, a new class of polyamine-based naphthalimide conjugates 5a-5c, 7a-7b, and 11a-11b with and without the alkylation of the distant nitrogen in the polyamine chain were synthesized and the mechanism was determined. Compared with amonafide, dinitro-naphthalimide conjugate 5c with a 4,3-cyclopropyl motif preferentially accumulates in cancer cells and minimizes side effects in vitro and in vivo. More importantly, 5c at the dosage of as low as 3 mg/kg (57.97%) displays better antitumor effects than the positive control amonafide (53.27%) at 5 mg/kg in vivo. And a remarkably elevated antitumor activity and a reduced toxicity are also observed for 5c at 5 mg/kg (65.90%). The upregulated p53 and the apoptotic cells (73.50%) indicate that the mechanism of 5c to induce apoptosis may result from its enhanced DNA damage. Further investigation indicates that in addition to target DNA, 5c can modulate the polyamine homeostasis by upregulating polyamine oxidase (PAO) in a different way from that of amonafide. And also by targeting PTs overexpressed in most of cancer cells, 5c downregulates the contents of Put, Spd, and Spm, which are in favor of suppressing fast-growing tumor cells. Our study implies a promising strategy for naphthalimide conjugates to treat hepatic carcinoma with notable activities and reduced toxicities at a low dosage.
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Affiliation(s)
- Jing Ma
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Yingguang Li
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Linrong Li
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Kexin Yue
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Hanfang Liu
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Jiajia Wang
- Joint National Laboratory for Antibody Drug Engineering, School of Basic Medicine Science, Henan University, Kaifeng, China
| | - Zhuoqing Xi
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China.,Henan University of Science and Technology Second Affiliated Hospital, Luoyang, China
| | - Man Shi
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Sihan Zhao
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Qi Ma
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Sitong Liu
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Shudi Guo
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Jianing Liu
- School of Medicine, Henan University Minsheng College, Kaifeng, China
| | - Lili Hou
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Chaojie Wang
- The Key Laboratory of Natural Medicine and Immuno-Engineering, Henan University, Kaifeng, China
| | - Peng George Wang
- Southern University of Science and Technology, School of Medicine, Shenzhen, China
| | - Zhiyong Tian
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
| | - Songqiang Xie
- School of Pharmacy, Institute for Innovative Drug Design and Evaluation, Henan University, Kaifeng, China
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IMCA Induces Ferroptosis Mediated by SLC7A11 through the AMPK/mTOR Pathway in Colorectal Cancer. OXIDATIVE MEDICINE AND CELLULAR LONGEVITY 2020; 2020:1675613. [PMID: 32322334 PMCID: PMC7160732 DOI: 10.1155/2020/1675613] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Revised: 12/01/2019] [Accepted: 01/28/2020] [Indexed: 02/08/2023]
Abstract
Ferroptosis, implicated in several diseases, is a new form of programmed and nonapoptotic cell death triggered by iron-dependent lipid peroxidation after inactivation of the cystine/glutamate antiporter system xc-, which is composed of solute carrier family 7 membrane 11 (SLC7A11) and solute carrier family 3 membrane 2 (SLC3A2). Therefore, inducing ferroptosis through inhibiting the cystine/glutamate antiporter system xc- may be an effective way to treat cancer. In previous screening tests, we found that the benzopyran derivative 2-imino-6-methoxy-2H-chromene-3-carbothioamide (IMCA) significantly inhibited the viability of colorectal cancer cells. However, the impact of IMCA on ferroptosis remains unknown. Hence, this study investigated the effect of IMCA on ferroptosis and elucidated the underlying molecular mechanism. Results showed that IMCA significantly inhibited the cell viability of colorectal cancer cells in vitro and inhibited tumor growth with negligible organ toxicity in vivo. Further studies showed that IMCA significantly induced the ferroptosis of colorectal cancer cells. Mechanistically, IMCA downregulated the expression of SLC7A11 and decreased the contents of cysteine and glutathione, which resulted in reactive oxygen species accumulation and ferroptosis. Furthermore, overexpression of SLC7A11 significantly attenuated the ferroptosis caused by IMCA. In addition, IMCA regulated the activity of the AMPK/mTOR/p70S6k signaling pathway, which is related to the activity of SLC7A11 and ferroptosis. Collectively, our research provided experimental evidences on the activity and mechanism of ferroptosis induced by IMCA and revealed that IMCA might be a promising therapeutic drug for colorectal cancer.
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Wei H, Liu J, Guo Q, Pan L, Chai S, Cheng Y, Ruan M, Ye Q, Wang R, Yao Z, Zhou G, Wan H. Genomic Organization and Comparative Phylogenic Analysis of NBS-LRR Resistance Gene Family in Solanum pimpinellifolium and Arabidopsis thaliana. Evol Bioinform Online 2020; 16:1176934320911055. [PMID: 32214791 PMCID: PMC7065440 DOI: 10.1177/1176934320911055] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 02/13/2020] [Indexed: 12/23/2022] Open
Abstract
NBS-LRR (nucleotide-binding site and leucine-rich repeat) is one of the largest resistance gene families in plants. The completion of the genome sequencing of wild tomato Solanum pimpinellifolium provided an opportunity to conduct a comprehensive analysis of the NBS-LRR gene superfamily at the genome-wide level. In this study, gene identification, chromosome mapping, and phylogenetic analysis of the NBS-LRR gene family were analyzed using the bioinformatics methods. The results revealed 245 NBS-LRRs in total, similar to that in the cultivated tomato. These genes are unevenly distributed on 12 chromosomes, and ~59.6% of them form gene clusters, most of which are tandem duplications. Phylogenetic analysis divided the NBS-LRRs into 2 subfamilies (CNL-coiled-coil NBS-LRR and TNL-TIR NBS-LRR), and the expansion of the CNL subfamily was more extensive than the TNL subfamily. Novel conserved structures were identified through conserved motif analysis between the CNL and TNL subfamilies. Compared with the NBS-LRR sequences from the model plant Arabidopsis thaliana, wide genetic variation occurred after the divergence of S. pimpinellifolium and A thaliana. Species-specific expansion was also found in the CNL subfamily in S. pimpinellifolium. The results of this study provide the basis for the deeper analysis of NBS-LRR resistance genes and contribute to mapping and isolation of candidate resistance genes in S. pimpinellifolium.
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Affiliation(s)
- Huawei Wei
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Jia Liu
- Wulanchabu Academy of Agricultural and Husbandry Sciences, Wulanchabu, China
| | - Qinwei Guo
- Quzhou Academy of Agricultural Sciences, Quzhou, China
| | - Luzhao Pan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Songlin Chai
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Yuan Cheng
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Meiying Ruan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Qingjing Ye
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Rongqing Wang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Zhuping Yao
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Guozhi Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Hongjian Wan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- China-Australia Research Centre for Crop Improvement, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
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32
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Xu P, Guo Q, Pang X, Zhang P, Kong D, Liu J. New Insights into Evolution of Plant Heat Shock Factors (Hsfs) and Expression Analysis of Tea Genes in Response to Abiotic Stresses. PLANTS (BASEL, SWITZERLAND) 2020; 9:E311. [PMID: 32131389 PMCID: PMC7154843 DOI: 10.3390/plants9030311] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Revised: 02/18/2020] [Accepted: 02/26/2020] [Indexed: 11/17/2022]
Abstract
Heat shock transcription factor (Hsf) is one of key regulators in plant abotic stress response. Although the Hsf gene family has been identified from several plant species, original and evolution relationship have been fragmented. In addition, tea, an important crop, genome sequences have been completed and function of the Hsf family genes in response to abiotic stresses was not illuminated. In this study, a total of 4208 Hsf proteins were identified within 163 plant species from green algae (Gonium pectorale) to angiosperm (monocots and dicots), which were distributed unevenly into each of plant species tested. The result indicated that Hsf originated during the early evolutionary history of chlorophytae algae and genome-wide genetic varies had occurred during the course of evolution in plant species. Phylogenetic classification of Hsf genes from the representative nine plant species into ten subfamilies, each of which contained members from different plant species, imply that gene duplication had occurred during the course of evolution. In addition, based on RNA-seq data, the member of the Hsfs showed different expression levels in the different organs and at the different developmental stages in tea. Expression patterns also showed clear differences among Camellia species, indicating that regulation of Hsf genes expression varied between organs in a species-specific manner. Furthermore, expression of most Hsfs in response to drought, cold and salt stresses, imply a possible positive regulatory role under abiotic stresses. Expression profiles of nineteen Hsf genes in response to heat stress were also analyzed by quantitative real-time RT-PCR. Several stress-responsive Hsf genes were highly regulated by heat stress treatment. In conclusion, these results lay a solid foundation for us to elucidate the evolutionary origin of plant Hsfs and Hsf functions in tea response to abiotic stresses in the future.
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Affiliation(s)
- Ping Xu
- Department of Tea Science, Zhejiang University, Hangzhou 310058, China;
| | - Qinwei Guo
- Quzhou Academy of Agricultural Sciences, Quzhou 324000, Zhejiang, China;
| | - Xin Pang
- Suzhou Polytechnic Institute of Agriculture, Suzhou 215008, China;
| | - Peng Zhang
- Wulanchabu Academy of Agricultural and Husbandry Sciences, Wulanchabu 012000, Inner Mongolia, China; (P.Z.); (D.K.)
| | - Dejuan Kong
- Wulanchabu Academy of Agricultural and Husbandry Sciences, Wulanchabu 012000, Inner Mongolia, China; (P.Z.); (D.K.)
| | - Jia Liu
- Wulanchabu Academy of Agricultural and Husbandry Sciences, Wulanchabu 012000, Inner Mongolia, China; (P.Z.); (D.K.)
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Saleem MH, Kamran M, Zhou Y, Parveen A, Rehman M, Ahmar S, Malik Z, Mustafa A, Ahmad Anjum RM, Wang B, Liu L. Appraising growth, oxidative stress and copper phytoextraction potential of flax (Linum usitatissimum L.) grown in soil differentially spiked with copper. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020; 257:109994. [PMID: 31868646 DOI: 10.1016/j.jenvman.2019.109994] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Revised: 11/27/2019] [Accepted: 12/11/2019] [Indexed: 05/06/2023]
Abstract
Flax (Linum usitatissimum L.) is one of the oldest predominant industrial crops grown for seed, oil and fiber. The present study was executed to evaluate the morpho-physiological traits, biochemical responses, gas exchange parameters and phytoextraction potential of flax raised in differentially copper (Cu) spiked soil viz (0, 200, 400 and 600 mg Cu kg-1 soil) under greenhouse pot experiment. The results revealed that flax plants were able to grow up to 400 mg kg-1 Cu level without showing significant growth inhabitation while, further inference of Cu (600 mg kg-1) in the soil prominently inhibited flax growth and biomass accumulation. Compared to the control, contents of proline and malondialdehyde (MDA) were increased by 160.0% and 754.1% accordingly, at 600 mg Cu kg-1 soil level. The Cu-induced oxidative stress was minimized by the enhanced activities of superoxide dismutase (SOD) by 189.2% and guaiacol peroxidase (POD) by 300.8% in the leaves of flax at 600 mg Cu kg-1 soil level, compared to the untreated control. The plant Cu concentration was determined at 35, 70, 105 and 140 days after sowing (DAS) and results depicted that 16.9 times higher Cu concentration was accumulated in flax roots while little (14.9 times) was transported to the shoots at early stage of growth, i.e. 35 DAS. While at 140 DAS, Cu was highly (21.7 times) transported to the shoots while, only 12.3 times Cu was accumulated in the roots at 600 mg Cu kg-1 soil level, compared to control. Meanwhile, Cu uptake by flax was boosted up to 253 mg kg-1 from the soil and thereby extracted 43%, 39% and 41% of Cu at 200, 400 and 600 mg Cu kg-1 soil level, compared to initial Cu concentration. Therefore, study concluded that flax has a great potential to accumulate high concentration of Cu in its shoots and can be utilized as phytoremediation material when grown in Cu contaminated soils.
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Affiliation(s)
- Muhammad Hamzah Saleem
- MOA Key Laboratory of Crop Ecophysiology and Farming System Core in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Muhammad Kamran
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.
| | - Yaoyu Zhou
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, China.
| | - Aasma Parveen
- Department of Soil Science, University College of Agriculture and Environmental Sciences, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan.
| | - Muzammal Rehman
- School of Agriculture, Yunnan University, Kunming 650504, China.
| | - Sunny Ahmar
- MOA Key Laboratory of Crop Ecophysiology and Farming System Core in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Zaffar Malik
- Department of Soil Science, University College of Agriculture and Environmental Sciences, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan.
| | - Adnan Mustafa
- National Engineering Laboratory for Improving Quality of Arable Land, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Rao Muhammad Ahmad Anjum
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, 38040, Pakistan.
| | - Bo Wang
- MOA Key Laboratory of Crop Ecophysiology and Farming System Core in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Lijun Liu
- MOA Key Laboratory of Crop Ecophysiology and Farming System Core in the Middle Reaches of the Yangtze River, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
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Wei H, Liu J, Zheng J, Zhou R, Cheng Y, Ruan M, Ye Q, Wang R, Yao Z, Zhou G, Deng M, Chen Y, Wan H. Sugar transporter proteins in Capsicum: identification, characterization, evolution and expression patterns. BIOTECHNOL BIOTEC EQ 2020. [DOI: 10.1080/13102818.2020.1749529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Huawei Wei
- College of Horticulture, Anhui Agricultural University, Hefei, China
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Jia Liu
- Wulanchabu Academy of Agricultural and Husbandry Sciences, Wulanchabu, China
| | - Jiaqiu Zheng
- Jiangsu Coastal Area Institute of Agricultural Sciences, Yancheng, China
| | - Rong Zhou
- Department of Food Science, Aarhus University, Agro Food Park, Denmark
| | - Yuan Cheng
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Meiying Ruan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Qingjing Ye
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Rongqing Wang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Zhuping Yao
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Guozhi Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Minghua Deng
- College of Horticulture and Landscape, Yunnan Agricultural University, Kunming, China
| | - Yougen Chen
- College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Hongjian Wan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- China-Australia Research Centre for Crop Improvement, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
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Guo J, Zhou Y, Li J, Sun Y, Shangguan Y, Zhu Z, Hu Y, Li T, Hu Y, Rochaix JD, Miao Y, Sun X. COE 1 and GUN1 regulate the adaptation of plants to high light stress. Biochem Biophys Res Commun 2020; 521:184-189. [DOI: 10.1016/j.bbrc.2019.10.101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Accepted: 10/12/2019] [Indexed: 10/25/2022]
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Wu T, Liu Z, Yang L, Cheng Y, Tu J, Yang F, Zhu H, Li X, Dai Y, Nie X, Qin Z. The Pyrus bretschneideri invertase gene family: identification, phylogeny and expression patterns. BIOTECHNOL BIOTEC EQ 2020. [DOI: 10.1080/13102818.2020.1745688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Affiliation(s)
- Tao Wu
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Zheng Liu
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Li Yang
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Yinsheng Cheng
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Junfan Tu
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Fuchen Yang
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Hongyan Zhu
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Xianming Li
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Yonghong Dai
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Xianshuang Nie
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
| | - Zhongqi Qin
- Department of Pear Research, Institute of Fruit & Tea, Hubei Academy of Agricultural Sciences, Wuhan, Hubei, P.R. China
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Guo Q, Liu H, Zhang X, Zhang T, Li C, Xiang X, Cui W, Fang P, Wan H, Cao C, Zhao D. Genome-wide identification and expression analysis of the carotenoid metabolic pathway genes in pepper ( Capsicum annuum L.). BIOTECHNOL BIOTEC EQ 2020. [DOI: 10.1080/13102818.2020.1824618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
Affiliation(s)
- Qinwei Guo
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Huiqin Liu
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Xinhui Zhang
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Ting Zhang
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Chaosen Li
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Xiaomin Xiang
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Wenhao Cui
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
| | - Pingping Fang
- Lab of Plant Quality and Safety Biology, College of Life Sciences, China Jiliang University, Hangzhou, PR China
| | - Hongjian Wan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, PR China
- China-Australia Research Centre for Crop Improvement, Zhejiang Academy of Agricultural Sciences, Hangzhou, PR China
| | - Chunxin Cao
- Laboratory of Pepper Molecular Breeding, Institute of Vegetables, Jinhua Academy of Agricultural Sciences, Jinhua, PR China
| | - Dongfeng Zhao
- Quzhou Key Laboratory for Germplasm Innovation and Utilization of Crop, Institute of Vegetables, Quzhou Academy of Agricultural Sciences, Quzhou, PR China
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Zou X, Zhang Y, Yuan J, Wang Z, Zeng R, Li K, Zhao Y, Zhang Z. A porous nano-adsorbent with dual functional groups for selective binding proteins with a low detection limit. RSC Adv 2020; 10:23270-23275. [PMID: 35520347 PMCID: PMC9054699 DOI: 10.1039/d0ra01193b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 05/14/2020] [Indexed: 11/21/2022] Open
Abstract
Porous nano-adsorbent with dual functional groups for selective binding proteins with a low detection limit.
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Affiliation(s)
- Xueyan Zou
- Engineering Research Center for Nanomaterials
- Henan University
- Kaifeng 475004
- China
- National & Local Joint Engineering Research Center for Applied Technology of Hybrid Nanomaterials
| | - Yu Zhang
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng 475004
- China
| | - Jinqiu Yuan
- Institute of Technology
- Henan University Minsheng College
- Kaifeng 459000
- China
| | - Zhibo Wang
- College of Chemistry and Chemical Engineering
- Henan University
- Kaifeng 475004
- China
| | - Rui Zeng
- Institute of Technology
- Henan University Minsheng College
- Kaifeng 459000
- China
| | - Kun Li
- State Key Laboratory of Crop Stress Adaptation and Improvement
- Kaifeng 459000
- China
| | - Yanbao Zhao
- Engineering Research Center for Nanomaterials
- Henan University
- Kaifeng 475004
- China
- National & Local Joint Engineering Research Center for Applied Technology of Hybrid Nanomaterials
| | - Zhijun Zhang
- Engineering Research Center for Nanomaterials
- Henan University
- Kaifeng 475004
- China
- National & Local Joint Engineering Research Center for Applied Technology of Hybrid Nanomaterials
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Hazra A, Dasgupta N, Sengupta C, Das S. MIPS: Functional dynamics in evolutionary pathways of plant kingdom. Genomics 2019; 111:1929-1945. [DOI: 10.1016/j.ygeno.2019.01.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Revised: 11/22/2018] [Accepted: 01/02/2019] [Indexed: 10/27/2022]
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Pan L, Guo Q, Chai S, Cheng Y, Ruan M, Ye Q, Wang R, Yao Z, Zhou G, Li Z, Deng M, Jin F, Liu L, Wan H. Evolutionary Conservation and Expression Patterns of Neutral/Alkaline Invertases in Solanum. Biomolecules 2019; 9:biom9120763. [PMID: 31766568 PMCID: PMC6995568 DOI: 10.3390/biom9120763] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2019] [Revised: 11/15/2019] [Accepted: 11/20/2019] [Indexed: 01/22/2023] Open
Abstract
The invertase gene family in plants is composed of two subfamilies of enzymes, namely, acid- and neutral/alkaline invertases (cytosolic invertase, CIN). Both can irreversibly cleave sucrose into fructose and glucose, which are thought to play key roles in carbon metabolism and plant growth. CINs are widely found in plants, but little is reported about this family. In this paper, a comparative genomic approach was used to analyze the CIN gene family in Solanum, including Solanum tuberosum, Solanum lycopersicum, Solanum pennellii, Solanum pimpinellifolium, and Solanum melongena. A total of 40 CINs were identified in five Solanum plants, and sequence features, phylogenetic relationships, motif compositions, gene structure, collinear relationship, and expression profile were further analyzed. Sequence analysis revealed a remarkable conservation of CINs in sequence length, gene number, and molecular weight. The previously verified four amino acid residues (D188, E414, Arg430, and Ser547) were also observed in 39 out of 40 CINs in our study, showing to be deeply conserved. The CIN gene family could be distinguished into groups α and β, and α is further subdivided into subgroups α1 and α2 in our phylogenetic tree. More remarkably, each species has an average of four CINs in the α and β groups. Marked interspecies conservation and collinearity of CINs were also further revealed by chromosome mapping. Exon-intron configuration and conserved motifs were consistent in each of these α and β groups on the basis of in silico analysis. Expression analysis indicated that CINs were constitutively expressed and share similar expression profiles in all tested samples from S. tuberosum and S. lycopersicum. In addition, in CIN genes of the tomato and potato in response to abiotic and biotic stresses, phytohormones also performed. Overall, CINs in Solanum were encoded by a small and highly conserved gene family, possibly reflecting structural and functional conservation in Solanum. These results lay the foundation for further expounding the functional characterization of CIN genes and are also significant for understanding the evolutionary profiling of the CIN gene family in Solanum.
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Affiliation(s)
- Luzhao Pan
- College of Horticulture and Gardening, Yangtze University, Jingzhou 434025, China; (L.P.); (S.C.); (L.L.)
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Qinwei Guo
- Quzhou Academy of Agricultural Sciences, Quzhou 324000, Zhejiang, China;
| | - Songlin Chai
- College of Horticulture and Gardening, Yangtze University, Jingzhou 434025, China; (L.P.); (S.C.); (L.L.)
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Yuan Cheng
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Meiying Ruan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Qingjing Ye
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Rongqing Wang
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Zhuping Yao
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Guozhi Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Zhimiao Li
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
| | - Minghua Deng
- College of Horticulture and landscape, Yunnan Agricultural University, Kunming 650201, China;
| | - Fengmei Jin
- Tianjin Research Center of Agricultural Biotechnology, Tianjin 300192, China;
| | - Lecheng Liu
- College of Horticulture and Gardening, Yangtze University, Jingzhou 434025, China; (L.P.); (S.C.); (L.L.)
| | - Hongjian Wan
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China; (Y.C.); (M.R.); (Q.Y.); (R.W.); (Z.Y.); (G.Z.); (Z.L.)
- China-Australia Research Centre for Crop Improvement, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
- Correspondence: ; Tel.: +86-571-86407677; Fax: +86-571-86400997
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Zhang X, Wei X, Wang M, Zhu X, Zhao Y, Wei F, Xia Z. Overexpression of NtabDOG1L promotes plant growth and enhances drought tolerance in Nicotiana tabacum. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2019; 287:110186. [PMID: 31481202 DOI: 10.1016/j.plantsci.2019.110186] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Revised: 07/04/2019] [Accepted: 07/06/2019] [Indexed: 05/02/2023]
Abstract
Drought is one of the major environmental stresses limiting crop growth and production. It is very important to exploit and utilize drought-tolerance genes to improve crop drought-resistance. In this study, we identified two homoeologs of a Nicotiana tabacum (Ntab) DELAY OF GERMINATION (DOG) 1 like gene, named as NtabDOG1L-T and NtabDOG1L-S, respectively. The NtabDOG1L genes were preferentially expressed in roots and their expression levels were induced by polyethylene glycol, high salt, cold, and abscisic acid treatments. Subcellular localization results indicated that NtabDOG1L-T was localized in the nucleus, cytoplasm and cell membrane. Overexpression of NtabDOG1L-T in tobacco resulted in roots growth enhancement in transgenic plants. Furthermore, overexpression of NtabDOG1L-T enhanced drought stress tolerance in transgenic tobacco. The transgenic tobacco lines exhibited lower leaf water loss and electrolyte leakage, lower content of malondialdehyde and reactive oxygen species (ROS), and higher antioxidant enzymes activities after drought treatment when compared with wild type (WT) plants. In addition, the expression levels of several genes encoding key antioxidant enzymes and drought-related proteins were higher in the transgenic plants than in the WT plants under drought stress. Taken together, our results showed that NtabDOG1L functions as a novel regulator that improves plant growth and drought tolerance in tobacco.
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Affiliation(s)
- Xiaoquan Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Xing Wei
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China
| | - Meiping Wang
- Library of Henan Agricultural University, Zhengzhou 450002, China
| | - Xianfeng Zhu
- School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Yue Zhao
- College of Life Science, Henan Agricultural University, Zhengzhou 450002, China.
| | - Fengjie Wei
- College of Tobacco Science, Henan Agricultural University, Zhengzhou 450002, China; Henan Institute of Tobacco Science, Zhengzhou 450002, China.
| | - Zongliang Xia
- College of Life Science, Henan Agricultural University, Zhengzhou 450002, China.
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Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation. Int J Mol Sci 2019; 20:ijms20123101. [PMID: 31242611 PMCID: PMC6627786 DOI: 10.3390/ijms20123101] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 06/19/2019] [Accepted: 06/24/2019] [Indexed: 11/24/2022] Open
Abstract
Abiotic stress is one of the major threats to plant crop yield and productivity. When plants are exposed to stress, production of reactive oxygen species (ROS) increases, which could lead to extensive cellular damage and hence crop loss. During evolution, plants have acquired antioxidant defense systems which can not only detoxify ROS but also adjust ROS levels required for proper cell signaling. Ascorbate peroxidase (APX), glutathione peroxidase (GPX), catalase (CAT) and superoxide dismutase (SOD) are crucial enzymes involved in ROS detoxification. In this study, 40 putative APX, 28 GPX, 16 CAT, and 41 SOD genes were identified from genomes of the resurrection species Boea hygrometrica, Selaginella lepidophylla, Xerophyta viscosa, and Oropetium thomaeum, and the mesophile Selaginellamoellendorffii. Phylogenetic analyses classified the APX, GPX, and SOD proteins into five clades each, and CAT proteins into three clades. Using co-expression network analysis, various regulatory modules were discovered, mainly involving glutathione, that likely work together to maintain ROS homeostasis upon desiccation stress in resurrection species. These regulatory modules also support the existence of species-specific ROS detoxification systems. The results suggest molecular pathways that regulate ROS in resurrection species and the role of APX, GPX, CAT and SOD genes in resurrection species during stress.
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Gong AD, Wu NN, Kong XW, Zhang YM, Hu MJ, Gong SJ, Dong FY, Wang JH, Zhao ZY, Liao YC. Inhibitory Effect of Volatiles Emitted From Alcaligenes faecalis N1-4 on Aspergillus flavus and Aflatoxins in Storage. Front Microbiol 2019; 10:1419. [PMID: 31293550 PMCID: PMC6603156 DOI: 10.3389/fmicb.2019.01419] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Accepted: 06/05/2019] [Indexed: 11/28/2022] Open
Abstract
Controlling aflatoxigenic Aspergillus flavus and aflatoxins (AFs) in grains and food during storage is a great challenge to humans worldwide. Alcaligenes faecalis N1-4 isolated from tea rhizosphere soil can produce abundant antifungal volatiles, and greatly inhibited the growth of A. flavus in un-contacted face-to-face dual culture testing. Gas chromatography tandem mass spectrometry revealed that dimethyl disulfide (DMDS) and methyl isovalerate (MI) were two abundant compounds in the volatile profiles of N1-4. DMDS was found to have the highest relative abundance (69.90%, to the total peak area) in N1-4, which prevented the conidia germination and mycelial growth of A. flavus at 50 and 100 μL/L, respectively. The effective concentration for MI against A. flavus is 200 μL/L. Additionally, Real-time quantitative PCR analysis proved that the expression of 12 important genes in aflatoxin biosynthesis pathway was reduced by these volatiles, and eight genes were down regulated by 4.39 to 32.25-folds compared to control treatment with significant differences. And the A. flavus infection and AFs contamination in groundnut, maize, rice and soybean of high water activity were completely inhibited by volatiles from N1-4 in storage. Scanning electron microscope further proved that A. flavus conidia inoculated on peanuts surface were severely damaged by volatiles from N1-4. Furthermore, strain N1-4 showed broad and antifungal activity to other six important plant pathogens including Fusarium graminearum, F. equiseti, Alternaria alternata, Botrytis cinerea, Aspergillus niger, and Colletotrichum graminicola. Thus, A. faecalis N1-4 and volatile DMDS and MI may have potential to be used as biocontrol agents to control A. flavus and AFs during storage.
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Affiliation(s)
- An-Dong Gong
- Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Nan-Nan Wu
- Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Xian-Wei Kong
- Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Yi-Mei Zhang
- Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Meng-Jun Hu
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, United States
| | - Shuang-Jun Gong
- Institute of Plant Protection and Soil Science, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Fei-Yan Dong
- Henan Key Laboratory of Tea Plant Biology, College of Life Sciences, Xinyang Normal University, Xinyang, China
| | - Jian-Hua Wang
- Institute for Agri-Food Standards and Testing Technology, Laboratory of Quality & Safety Risk Assessment for Agro-Products (Shanghai), Ministry of Agriculture, Shanghai Academy of Agricultural Sciences, Shanghai, China
| | - Zhi-Yong Zhao
- Institute for Agri-Food Standards and Testing Technology, Laboratory of Quality & Safety Risk Assessment for Agro-Products (Shanghai), Ministry of Agriculture, Shanghai Academy of Agricultural Sciences, Shanghai, China
| | - Yu-Cai Liao
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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Imran M, Sun X, Hussain S, Ali U, Rana MS, Rasul F, Saleem MH, Moussa MG, Bhantana P, Afzal J, Elyamine AM, Hu CX. Molybdenum-Induced Effects on Nitrogen Metabolism Enzymes and Elemental Profile of Winter Wheat ( Triticum aestivum L.) Under Different Nitrogen Sources. Int J Mol Sci 2019; 20:ijms20123009. [PMID: 31226753 PMCID: PMC6627063 DOI: 10.3390/ijms20123009] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 05/30/2019] [Accepted: 06/01/2019] [Indexed: 12/14/2022] Open
Abstract
Different nitrogen (N) sources have been reported to significantly affect the activities and expressions of N metabolism enzymes and mineral elements concentrations in crop plants. However, molybdenum-induced effects in winter wheat cultivars have still not been investigated under different N sources. Here, a hydroponic study was carried out to investigate these effects on two winter wheat cultivars (‘97003’ and ‘97014’) as Mo-efficient and Mo-inefficient, respectively, under different N sources (NO3−, NH4NO3, and NH4+). The results revealed that the activities of nitrate reductase (NR) and nitrite reductase (NiR) followed the order of NH4NO3 > NO3− > NH4+ sources, while glutamine synthetase (GS) and glutamate synthase (GOGAT) followed the order of NH4+ > NH4NO3 > NO3− in both the wheat cultivars. However, Mo-induced effects in the activities and expressions of N metabolism enzymes under different N sources followed the order of NH4NO3 > NO3− > NH4+ sources, indicating that Mo has more complementary effects towards nitrate nutrition than the sole ammonium source in winter wheat. Interestingly, under −Mo-deprived conditions, cultivar ‘97003’ recorded more pronounced alterations in Mo-dependent parameters than ‘97014’ cultivar. Moreover, Mo application increased the proteins, amino acids, ammonium, and nitrite contents while concomitantly decreasing the nitrate contents in the same order of NH4NO3 > NO3− > NH4+ sources that coincides with the Mo-induced N enzymes activities and expressions. The findings of the present study indicated that Mo plays a key role in regulating the N metabolism enzymes and assimilatory products under all the three N sources; however, the extent of complementation exists in the order of NH4NO3 > NO3− > NH4+ sources in winter wheat. In addition, it was revealed that mineral elements profiles were mainly affected by different N sources, while Mo application generally had no significant effects on the mineral elements contents in the winter wheat leaves under different N sources.
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Affiliation(s)
- Muhammad Imran
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
| | - Xuecheng Sun
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, 38040 Punjab, Pakistan.
| | - Usman Ali
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Muhammad Shoaib Rana
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
| | - Fahd Rasul
- Department of Agronomy, University of Agriculture Faisalabad, 38040 Punjab, Pakistan.
| | - Muhammad Hamzah Saleem
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Mohamed G Moussa
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
- Soil and Water Research Department, Nuclear Research Center, Egyptian Atomic Energy Authority, Abou Zaabl 13759, Egypt.
| | - Parashuram Bhantana
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
| | - Javaria Afzal
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
| | - Ali Mohamed Elyamine
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
- Faculty of Science and Technology, Department of Life Science, University of Comoros, Moroni 269, Comoros.
| | - Cheng Xiao Hu
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan 430070, China.
- Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China.
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Wang P, Zhang S, Qiao J, Sun Q, Shi Q, Cai C, Mo J, Chu Z, Yuan Y, Du X, Miao Y, Zhang X, Cai Y. Functional analysis of the GbDWARF14 gene associated with branching development in cotton. PeerJ 2019; 7:e6901. [PMID: 31143538 PMCID: PMC6524629 DOI: 10.7717/peerj.6901] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Accepted: 03/30/2019] [Indexed: 12/20/2022] Open
Abstract
Plant architecture, including branching pattern, is an important agronomic trait of cotton crops. In recent years, strigolactones (SLs) have been considered important plant hormones that regulate branch development. In some species such as Arabidopsis, DWARF14 is an unconventional receptor that plays an important role in the SL signaling pathway. However, studies on SL receptors in cotton are still lacking. Here, we cloned and analysed the structure of the GbD14 gene in Gossypium barbadense and found that it contains the domains necessary for a SL receptor. The GbD14 gene was expressed primarily in the roots, leaves and vascular bundles, and the GbD14 protein was determined via GFP to localize to the cytoplasm and nucleus. Gene expression analysis revealed that the GbD14 gene not only responded to SL signals but also was differentially expressed between cotton plants whose types of branching differed. In particular, GbD14 was expressed mainly in the axillary buds of normal-branching cotton, while it was expressed the most in the leaves of nulliplex-branch cotton. In cotton, the GbD14 gene can be induced by SL and other plant hormones, such as indoleacetic acid, abscisic acid, and jasmonic acid. Compared with wild-type Arabidopsis, GbD14-overexpressing Arabidopsis responded more rapidly to SL signals. Moreover, we also found that GbD14 can rescue the multi-branched phenotype of Arabidopsis Atd14 mutants. Our results indicate that the function of GbD14 is similar to that of AtD14, and GbD14 may be a receptor for SL in cotton and involved in regulating branch development. This research provides a theoretical basis for a profound understanding of the molecular mechanism of branch development and ideal plant architecture for cotton breeding improvements.
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Affiliation(s)
- Ping Wang
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Sai Zhang
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Jing Qiao
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Quan Sun
- College of Bioinformation, Chongqing University of Posts and Telecommunications, Chongqing, China
| | - Qian Shi
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Chaowei Cai
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Jianchuan Mo
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Zongyan Chu
- Kaifeng Academy of Agriculture and Forestry, Kaifeng, China
| | - Youlu Yuan
- State Key Laboratory of Cotton Biology, Key Laboratory of Cotton Genetic Improvement, Cotton Institute of the Chinese Academy of Agricultural Sciences, Anyang, China
| | - Xiongming Du
- State Key Laboratory of Cotton Biology, Key Laboratory of Cotton Genetic Improvement, Cotton Institute of the Chinese Academy of Agricultural Sciences, Anyang, China
| | - Yuchen Miao
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Xiao Zhang
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
| | - Yingfan Cai
- State Key Laboratory of Cotton Biology, Henan Key Laboratory of Plant Stress Biology, School of Life Sciences, Bioinformatics Center, School of Computer and Information Engineering, Henan University, Kaifeng, Henan, China
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Identification and Characterization of the Glutathione Peroxidase (GPX) Gene Family in Watermelon and Its Expression under Various Abiotic Stresses. AGRONOMY-BASEL 2018. [DOI: 10.3390/agronomy8100206] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Plant glutathione peroxidase (GPX) is an important antioxidant enzyme to maintain H2O2 homeostasis and regulate plant response to abiotic stress. In this paper, we present the first report of a genome-wide identification of GPX genes in watermelon. A total of six genes (ClGPX1–ClGPX6) were identified, which were unevenly located on four chromosomes of the watermelon genome. Based on phylogenetic analysis, the GPX genes of Arabidopsis, rice, cucumber, and sorghum were classified into four groups. Through analyzing the promoter regions of ClGPX genes, many development-, stress-, and hormone-responsive cis-acting regulatory elements were also identified. Expression pattern analysis by qRT-PCR indicated that all ClGPX genes were actively expressed in flowers and fruits, and exhibited relatively lower expression in other tissues, particularly roots and stems. In addition, the expression of ClGPX genes was significantly induced by salt, drought, and cold stresses, as well as abscisic acid (ABA) treatment at different time points, suggesting that they may be involved in response to abiotic stress and ABA. Taken together, our findings demonstrated that ClGPX genes might function in watermelon development, especially in flower and fruit tissue, as well as in response to abiotic stress and hormones.
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Tyagi S, Sembi JK, Upadhyay SK. Gene architecture and expression analyses provide insights into the role of glutathione peroxidases (GPXs) in bread wheat (Triticum aestivum L.). JOURNAL OF PLANT PHYSIOLOGY 2018; 223:19-31. [PMID: 29471272 DOI: 10.1016/j.jplph.2018.02.006] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Revised: 02/07/2018] [Accepted: 02/09/2018] [Indexed: 05/05/2023]
Abstract
Glutathione peroxidases (GPXs) are redox sensor proteins that maintain a steady-state of H2O2 in plant cells. They exhibit distinct sub-cellular localization and have diverse functionality in response to different stimuli. In this study, a total of 14 TaGPX genes and three splice variants were identified in the genome of Triticum aestivum and evaluated for various physicochemical properties. The TaGPX genes were scattered on the various chromosomes of the A, B, and D sub-genomes and clustered into five homeologous groups based on high sequence homology. The majority of genes were derived from the B sub-genome and localized on chromosome 2. The intron-exon organization, motif and domain architecture, and phylogenetic analyses revealed the conserved nature of TaGPXs. The occurrence of both development-related and stress-responsive cis-acting elements in the promoter region, the differential expression of these genes during various developmental stages, and the modulation of expression in the presence of biotic and abiotic stresses suggested their diverse role in T. aestivum. The majority of TaGPX genes showed higher expression in various leaf developmental stages. However, TaGPX1-A1 was upregulated in the presence of each abiotic stress treatment. A co-expression analysis revealed the interaction of TaGPXs with numerous development and stress-related genes, which indicated their vital role in numerous biological processes. Our study revealed the opportunities for further characterization of individual TaGPX proteins, which might be useful in designing future crop improvement strategies.
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Affiliation(s)
- Shivi Tyagi
- Department of Botany, Panjab University, Chandigarh,160014, India
| | - Jaspreet K Sembi
- Department of Botany, Panjab University, Chandigarh,160014, India
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48
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Genome-wide identification of glutathione peroxidase (GPX) gene family and their response to abiotic stress in cucumber. 3 Biotech 2018. [PMID: 29515965 DOI: 10.1007/s13205-018-1185-3] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
Plant glutathione peroxidases (GPXs) are non-heme thiol peroxidases that play vital roles in maintaining H2O2 homeostasis and regulating plant response to abiotic stress. Here, we performed a comparative genomic analysis of the GPX gene family in cucumber (Cucumis sativus). As a result, a total of 6 CsGPX genes were identified, which were unevenly located in four out of the seven chromosomes in cucumber genome. Based on the phylogenetic analysis, the GPX genes of cucumber, Arabidopsis and rice could be classified into five groups. Analysis of the distribution of conserved domains of GPX proteins showed that all these proteins contain three highly conserved motifs, as well as other conserved sequences and residues. Gene structure analysis revealed a conserved exon-intron organization pattern of these genes. Through analyzing the promoter regions of CsGPX genes, many hormone-, stress-, and development-responsive cis-elements were identified. Moreover, we also investigated their expression patterns in different tissues and developmental stages as well as in response to abiotic stress and x acid (ABA) treatments. The qRT-PCR results showed that the transcripts of CsGPX genes varied largely under abiotic stress and ABA treatments at different time points. These results demonstrate that cucumber GPX gene family may function in tissue development and plant stress responses.
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Li H, Li K, Guo Y, Guo J, Miao K, Botella JR, Song CP, Miao Y. A transient transformation system for gene characterization in upland cotton ( Gossypium hirsutum). PLANT METHODS 2018; 14:50. [PMID: 29977323 PMCID: PMC6013946 DOI: 10.1186/s13007-018-0319-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Accepted: 06/18/2018] [Indexed: 05/07/2023]
Abstract
BACKGROUND Genetically modified cotton accounts for 64% of the world's cotton growing area (22.3 million hectares). The genome sequencing of the diploid cotton progenitors Gossypium raimondii and Gossypium arboreum as well as the cultivated Gossypium hirsutum has provided a wealth of genetic information that could be exploited for crop improvement. Unfortunately, gene functional characterization in cotton is lagging behind other economically important crops due to the low efficiency, lengthiness and technical complexity of the available stable transformation methods. We present here a simple, fast and efficient method for the transient transformation of G. hirsutum that can be used for gene characterization studies. RESULTS We developed a transient transformation system for gene characterization in upland cotton. Using β-glucuronidase as a reporter for Agrobacterium-mediated transformation assays, we evaluated multiple transformation parameters such as Agrobacterium strain, bacterial density, length of co-cultivation, chemicals and surfactants, which can affect transformation efficiency. After the initial characterization, the Agrobacterium EHA105 strain was selected and a number of binary constructs used to perform gene characterization studies. 7-days-old cotton seedlings were co-cultivated with Agrobacterium and transient gene expression was observed 5 days after infection of the plants. Transcript levels of two different transgenes under the control of the cauliflower mosaic virus (CaMV) 35S promoter were quantified by real-time reverse transcription PCR (qRT-PCR) showing a 3-10 times increase over the levels observed in non-infected controls. The expression patterns driven by the promoters of two G. hirsutum genes as well as the subcellular localization of their corresponding proteins were studied using the new transient expression system and our observations were consistent with previously published results using Arabidopsis as a heterologous system. CONCLUSIONS The Agrobacterium-mediated transient transformation method is a fast and easy transient expression system enabling high transient expression and transformation efficiency in upland cotton seedlings. Our method can be used for gene functional studies such as promoter characterization and protein subcellular localization in cotton, obviating the need to perform such studies in a heterologous system such as Arabidopsis.
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Affiliation(s)
- Haipeng Li
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
| | - Kun Li
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
| | - Yutao Guo
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
| | - Jinggong Guo
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
| | - Kaiting Miao
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
- School of Life Science, Southwest University, No. 1, Tiansheng Road, Beibei, Chongqing, 400715 China
| | - Jose R. Botella
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
- School of Agriculture and Food Sciences, University of Queensland, Brisbane, QLD Australia
| | - Chun-Peng Song
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
| | - Yuchen Miao
- Institute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, 85 Minglun Street, Kaifeng, 475001 China
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50
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Ahmed MS, Shahjaman M, Rana MM, Mollah MNH. Robustification of Naïve Bayes Classifier and Its Application for Microarray Gene Expression Data Analysis. BIOMED RESEARCH INTERNATIONAL 2017; 2017:3020627. [PMID: 28848763 PMCID: PMC5564130 DOI: 10.1155/2017/3020627] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2017] [Revised: 06/10/2017] [Accepted: 06/14/2017] [Indexed: 01/31/2023]
Abstract
The naïve Bayes classifier (NBC) is one of the most popular classifiers for class prediction or pattern recognition from microarray gene expression data (MGED). However, it is very much sensitive to outliers with the classical estimates of the location and scale parameters. It is one of the most important drawbacks for gene expression data analysis by the classical NBC. The gene expression dataset is often contaminated by outliers due to several steps involved in the data generating process from hybridization of DNA samples to image analysis. Therefore, in this paper, an attempt is made to robustify the Gaussian NBC by the minimum β-divergence method. The role of minimum β-divergence method in this article is to produce the robust estimators for the location and scale parameters based on the training dataset and outlier detection and modification in test dataset. The performance of the proposed method depends on the tuning parameter β. It reduces to the traditional naïve Bayes classifier when β → 0. We investigated the performance of the proposed beta naïve Bayes classifier (β-NBC) in a comparison with some popular existing classifiers (NBC, KNN, SVM, and AdaBoost) using both simulated and real gene expression datasets. We observed that the proposed method improved the performance over the others in presence of outliers. Otherwise, it keeps almost equal performance.
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Affiliation(s)
- Md. Shakil Ahmed
- Lab of Bioinformatics, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh
| | - Md. Shahjaman
- Lab of Bioinformatics, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh
- Department of Statistics, Begum Rokeya University, Rangpur, Rangpur 5400, Bangladesh
| | - Md. Masud Rana
- Lab of Bioinformatics, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh
| | - Md. Nurul Haque Mollah
- Lab of Bioinformatics, Department of Statistics, University of Rajshahi, Rajshahi 6205, Bangladesh
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