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For: Butler HJ, Smith BR, Fritzsch R, Radhakrishnan P, Palmer DS, Baker MJ. Optimised spectral pre-processing for discrimination of biofluids via ATR-FTIR spectroscopy. Analyst 2019;143:6121-6134. [PMID: 30484797 DOI: 10.1039/c8an01384e] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Number Cited by Other Article(s)
1
Li X, Zeng P, Wu X, Yang X, Lin J, Liu P, Wang Y, Diao Y. ResD-Net: A model for rapid prediction of antioxidant activity in gentian root using FT-IR spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024;310:123848. [PMID: 38266602 DOI: 10.1016/j.saa.2024.123848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Revised: 01/02/2024] [Accepted: 01/03/2024] [Indexed: 01/26/2024]
2
Wasim M, Ghaffar U, Javed MR, Nawaz H, Majeed MI, Ijaz A, Ishtiaq S, Rehman N, Razaq R, Younas S, Bano A, Kanwal N, Imran M. Surface-Enhanced Raman Spectroscopy for Monitoring the Biochemical Changes Due to DNA Mutations Induced by CRISPR-Cas9 Genome Editing in the Aspergillus niger Fungus. ACS OMEGA 2024;9:15202-15209. [PMID: 38585125 PMCID: PMC10993282 DOI: 10.1021/acsomega.3c09563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 01/22/2024] [Accepted: 03/04/2024] [Indexed: 04/09/2024]
3
Li YP, Lu TY, Huang FR, Zhang WM, Chen ZQ, Guang PW, Deng LY, Yang XH. Differential diagnosis of Crohn's disease and intestinal tuberculosis based on ATR-FTIR spectroscopy combined with machine learning. World J Gastroenterol 2024;30:1377-1392. [PMID: 38596500 PMCID: PMC11000079 DOI: 10.3748/wjg.v30.i10.1377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 01/02/2024] [Accepted: 02/06/2024] [Indexed: 03/14/2024]  Open
4
Mehmood N, Akram MW, Majeed MI, Nawaz H, Aslam MA, Naman A, Wasim M, Ghaffar U, Kamran A, Nadeem S, Kanwal N, Imran M. Surface-enhanced Raman spectroscopy for the characterization of bacterial pellets of Staphylococcus aureus infected by bacteriophage. RSC Adv 2024;14:5425-5434. [PMID: 38348301 PMCID: PMC10859908 DOI: 10.1039/d3ra07575c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 01/12/2024] [Indexed: 02/15/2024]  Open
5
Lao Q, Yang L, Liu S, Ma X, Tan D, Li J, Liao B, Wei Y, Pang W, Morais CLM, Liu H. Effects of Benzo (a) Pyrene and 2,2',4,4'-Tetrabromodiphenyl Ether Exposure on the Thyroid Gland in Rats by Attenuated Total Reflection Fourier-Transform Infrared Spectroscopy. ACS OMEGA 2024;9:4317-4323. [PMID: 38313510 PMCID: PMC10831854 DOI: 10.1021/acsomega.3c05819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Revised: 12/23/2023] [Accepted: 01/04/2024] [Indexed: 02/06/2024]
6
Gozdzialski L, Hutchison A, Wallace B, Gill C, Hore D. Toward automated infrared spectral analysis in community drug checking. Drug Test Anal 2024;16:83-92. [PMID: 37248686 DOI: 10.1002/dta.3520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/13/2023] [Accepted: 05/16/2023] [Indexed: 05/31/2023]
7
Kim SY, Shin SY, Saeed M, Ryu JE, Kim JS, Ahn J, Jung Y, Moon JM, Choi CH, Choi HK. Prediction of Clinical Remission with Adalimumab Therapy in Patients with Ulcerative Colitis by Fourier Transform-Infrared Spectroscopy Coupled with Machine Learning Algorithms. Metabolites 2023;14:2. [PMID: 38276292 PMCID: PMC10818421 DOI: 10.3390/metabo14010002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 12/06/2023] [Accepted: 12/12/2023] [Indexed: 01/27/2024]  Open
8
Condino F, Crocco MC, Pirritano D, Petrone A, Del Giudice F, Guzzi R. A Linear Predictor Based on FTIR Spectral Biomarkers Improves Disease Diagnosis Classification: An Application to Multiple Sclerosis. J Pers Med 2023;13:1596. [PMID: 38003911 PMCID: PMC10672539 DOI: 10.3390/jpm13111596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/02/2023] [Accepted: 11/09/2023] [Indexed: 11/26/2023]  Open
9
Dou J, Dawuti W, Li J, Zhao H, Zhou R, Zhou J, Lin R, Lü G. Rapid detection of serological biomarkers in gallbladder carcinoma using fourier transform infrared spectroscopy combined with machine learning. Talanta 2023;259:124457. [PMID: 36989965 DOI: 10.1016/j.talanta.2023.124457] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 03/10/2023] [Accepted: 03/12/2023] [Indexed: 03/29/2023]
10
Amin MO, Al-Hetlani E, Lednev IK. Discrimination of smokers and nonsmokers based on the analysis of fingermarks for forensic purposes. Microchem J 2023. [DOI: 10.1016/j.microc.2023.108466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
11
Theakstone AG, Brennan PM, Jenkinson MD, Goodacre R, Baker MJ. Investigating centrifugal filtration of serum-based FTIR spectroscopy for the stratification of brain tumours. PLoS One 2023;18:e0279669. [PMID: 36800340 PMCID: PMC9937474 DOI: 10.1371/journal.pone.0279669] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 01/31/2023] [Indexed: 02/18/2023]  Open
12
Antoniou G, Conn JJA, Smith BR, Brennan PM, Baker MJ, Palmer DS. Recurrent neural networks for time domain modelling of FTIR spectra: application to brain tumour detection. Analyst 2023;148:1770-1776. [PMID: 36967685 DOI: 10.1039/d2an02041f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
13
Rapid and sensitive detection of esophageal cancer by FTIR spectroscopy of serum and plasma. Photodiagnosis Photodyn Ther 2022;40:103177. [PMID: 36602070 DOI: 10.1016/j.pdpdt.2022.103177] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Revised: 10/21/2022] [Accepted: 10/26/2022] [Indexed: 11/11/2022]
14
Agustika DK, Mercuriani I, Purnomo CW, Hartono S, Triyana K, Iliescu DD, Leeson MS. Fourier transform infrared spectrum pre-processing technique selection for detecting PYLCV-infected chilli plants. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022;278:121339. [PMID: 35537256 DOI: 10.1016/j.saa.2022.121339] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 04/12/2022] [Accepted: 04/29/2022] [Indexed: 06/14/2023]
15
Németh ZI, Németh KE, Rákosa R. Effect of ATR sample holder on the FT-IR spectrum of polypropylene foil. INTERNATIONAL JOURNAL OF POLYMER ANALYSIS AND CHARACTERIZATION 2022. [DOI: 10.1080/1023666x.2022.2121491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
16
Sala A, Cameron JM, Jenkins CA, Barr H, Christie L, Conn JJA, Evans TRJ, Harris DA, Palmer DS, Rinaldi C, Theakstone AG, Baker MJ. Liquid Biopsy for Pancreatic Cancer Detection Using Infrared Spectroscopy. Cancers (Basel) 2022;14:3048. [PMID: 35804820 PMCID: PMC9264892 DOI: 10.3390/cancers14133048] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 06/16/2022] [Accepted: 06/20/2022] [Indexed: 12/04/2022]  Open
17
Woods FER, Jenkins CA, Jenkins RA, Chandler S, Harris DA, Dunstan PR. Optimised Pre-Processing of Raman Spectra for Colorectal Cancer Detection Using High-Performance Computing. APPLIED SPECTROSCOPY 2022;76:496-507. [PMID: 35255720 DOI: 10.1177/00037028221088320] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
18
Cameron JM, Brennan PM, Antoniou G, Butler HJ, Christie L, Conn JJA, Curran T, Gray E, Hegarty MG, Jenkinson MD, Orringer D, Palmer DS, Sala A, Smith BR, Baker MJ. Clinical validation of a spectroscopic liquid biopsy for earlier detection of brain cancer. Neurooncol Adv 2022;4:vdac024. [PMID: 35316978 PMCID: PMC8934542 DOI: 10.1093/noajnl/vdac024] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
19
Yang S, Zhang Q, Yang H, Shi H, Dong A, Wang L, Yu S. Progress in infrared spectroscopy as an efficient tool for predicting protein secondary structure. Int J Biol Macromol 2022;206:175-187. [PMID: 35217087 DOI: 10.1016/j.ijbiomac.2022.02.104] [Citation(s) in RCA: 52] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 02/14/2022] [Accepted: 02/17/2022] [Indexed: 12/21/2022]
20
Nascimento MC, Marcarini WD, Folli GS, da Silva Filho WG, Barbosa LL, Paulo EH, Vassallo PF, Mill JG, Barauna V, Martin FL, de Castro ER, Romão W, Filgueiras PR. Noninvasive Diagnostic for COVID-19 from Saliva Biofluid via FTIR Spectroscopy and Multivariate Analysis. Anal Chem 2022;94:2425-2433. [PMID: 35076208 PMCID: PMC8805707 DOI: 10.1021/acs.analchem.1c04162] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 01/13/2022] [Indexed: 01/22/2023]
21
Meyvisch P, Gurdebeke PR, Vrielinck H, Neil Mertens K, Versteegh G, Louwye S. Attenuated Total Reflection (ATR) Micro-Fourier Transform Infrared (Micro-FT-IR) Spectroscopy to Enhance Repeatability and Reproducibility of Spectra Derived from Single Specimen Organic-Walled Dinoflagellate Cysts. APPLIED SPECTROSCOPY 2022;76:235-254. [PMID: 34494488 DOI: 10.1177/00037028211041172] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
22
Holden CA, Bailey JP, Taylor JE, Martin F, Beckett P, McAinsh M. Know your enemy: Application of ATR-FTIR spectroscopy to invasive species control. PLoS One 2022;17:e0261742. [PMID: 34995300 PMCID: PMC8740966 DOI: 10.1371/journal.pone.0261742] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 12/08/2021] [Indexed: 11/29/2022]  Open
23
Holden CA, Morais CLM, Taylor JE, Martin FL, Beckett P, McAinsh M. Regional differences in clonal Japanese knotweed revealed by chemometrics-linked attenuated total reflection Fourier-transform infrared spectroscopy. BMC PLANT BIOLOGY 2021;21:522. [PMID: 34753418 PMCID: PMC8579538 DOI: 10.1186/s12870-021-03293-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
24
Theakstone AG, Brennan PM, Jenkinson MD, Mills SJ, Syed K, Rinaldi C, Xu Y, Goodacre R, Butler HJ, Palmer DS, Smith BR, Baker MJ. Rapid Spectroscopic Liquid Biopsy for the Universal Detection of Brain Tumours. Cancers (Basel) 2021;13:cancers13153851. [PMID: 34359751 PMCID: PMC8345395 DOI: 10.3390/cancers13153851] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 07/22/2021] [Accepted: 07/29/2021] [Indexed: 11/16/2022]  Open
25
Brennan PM, Butler HJ, Christie L, Hegarty MG, Jenkinson MD, Keerie C, Norrie J, O'Brien R, Palmer DS, Smith BR, Baker MJ. Early diagnosis of brain tumours using a novel spectroscopic liquid biopsy. Brain Commun 2021;3:fcab056. [PMID: 33997782 PMCID: PMC8111062 DOI: 10.1093/braincomms/fcab056] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 02/15/2021] [Accepted: 02/17/2021] [Indexed: 12/05/2022]  Open
26
Elkadi OA, Hassan R, Elanany M, Byrne HJ, Ramadan MA. Identification of Aspergillus species in human blood plasma by infrared spectroscopy and machine learning. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021;248:119259. [PMID: 33307345 DOI: 10.1016/j.saa.2020.119259] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 11/14/2020] [Accepted: 11/24/2020] [Indexed: 06/12/2023]
27
Theakstone AG, Rinaldi C, Butler HJ, Cameron JM, Confield LR, Rutherford SH, Sala A, Sangamnerkar S, Baker MJ. Fourier‐transform infrared spectroscopy of biofluids: A practical approach. TRANSLATIONAL BIOPHOTONICS 2021. [DOI: 10.1002/tbio.202000025] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
28
Kelani KM, Rezk MR, Monir HH, ElSherbiny MS, Eid SM. FTIR combined with chemometric tools (fingerprinting spectroscopy) in comparison to HPLC: which strategy offers more opportunities as a green analytical chemistry technique for pharmaceutical analysis. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2020;12:5893-5907. [PMID: 33290449 DOI: 10.1039/d0ay01749c] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
29
Locke A, Fitzgerald S, Mahadevan-Jansen A. Advances in Optical Detection of Human-Associated Pathogenic Bacteria. Molecules 2020;25:E5256. [PMID: 33187331 PMCID: PMC7696695 DOI: 10.3390/molecules25225256] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Revised: 11/04/2020] [Accepted: 11/06/2020] [Indexed: 02/06/2023]  Open
30
Stratifying Brain Tumour Histological Sub-Types: The Application of ATR-FTIR Serum Spectroscopy in Secondary Care. Cancers (Basel) 2020;12:cancers12071710. [PMID: 32605100 PMCID: PMC7408619 DOI: 10.3390/cancers12071710] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 06/19/2020] [Accepted: 06/25/2020] [Indexed: 12/17/2022]  Open
31
Paluszkiewicz C, Pięta E, Woźniak M, Piergies N, Koniewska A, Ścierski W, Misiołek M, Kwiatek WM. Saliva as a first-line diagnostic tool: A spectral challenge for identification of cancer biomarkers. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.112961] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
32
Biofluid diagnostics by FTIR spectroscopy: A platform technology for cancer detection. Cancer Lett 2020;477:122-130. [DOI: 10.1016/j.canlet.2020.02.020] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 01/31/2020] [Accepted: 02/14/2020] [Indexed: 12/19/2022]
33
Bel'skaya LV, Sarf EA, Solomatin DV. Age and Gender Characteristics of the Infrared Spectra of Normal Human Saliva. APPLIED SPECTROSCOPY 2020;74:536-543. [PMID: 31617400 DOI: 10.1177/0003702819885958] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
34
Cameron JM, Butler HJ, Smith BR, Hegarty MG, Jenkinson MD, Syed K, Brennan PM, Ashton K, Dawson T, Palmer DS, Baker MJ. Developing infrared spectroscopic detection for stratifying brain tumour patients: glioblastoma multiforme vs. lymphoma. Analyst 2020;144:6736-6750. [PMID: 31612875 DOI: 10.1039/c9an01731c] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
35
Butler HJ, Brennan PM, Cameron JM, Finlayson D, Hegarty MG, Jenkinson MD, Palmer DS, Smith BR, Baker MJ. Development of high-throughput ATR-FTIR technology for rapid triage of brain cancer. Nat Commun 2019;10:4501. [PMID: 31594931 PMCID: PMC6783469 DOI: 10.1038/s41467-019-12527-5] [Citation(s) in RCA: 96] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Accepted: 09/16/2019] [Indexed: 12/22/2022]  Open
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