A 3D copper (II) coordination polymer based on sulfanilic acid ligand (CP 1) for efficient biomolecular interaction with bovine serum albumin: spectroscopic, molecular modelling and DFT analysis

Several biochemical reactions occur during the interaction of metal complexes and proteins due to conformational modifications in the structure of the protein, which provide fundamental knowledge of the effect, mechanism, and transport of many drugs throughout the body. Here, we report the synthesis, identification, and impact of the 3-dimensional Copper(II)sulfanilic acid coordination polymer (CP 1) on interactions with bovine serum albumin (BSA). The CP 1 was synthesized via a simple hot stirring method, and the single crystal XRD confirms the effective bonding interactions between metal and organic ligand, forming a crystalline polymeric chain and the topological study shows the sql type of underlying net topology. Powder XRD, Fourier transform infrared spectroscopy, and thermogravimetric analysis were also performed. Moreover, DFT/B3LYP calculations provide chemical precision for the resulting complex. Further, the changes that occur in the secondary structure of protein when CP 1 binds with BSA as well as its binding capacity were investigated via circular dichroism analysis and spectroscopic methods such as UV-absorption spectroscopy and fluorescence spectroscopy, respectively. The CP 1/BSA complex melting point was also measured, and its temperature-dependent heat denaturation was studied along with molecular docking.Communicated by Ramaswamy H. Sarma.

Insights into Spectral Distortion and Nonlinearity in UV-Vis and Fluorescence Spectroscopy of Molecular Fluorophore Solutions: Effects of Cascading Optical Processes (Part IV)

Reproducibility and linearity are crucial benchmarks for any measurement technology. However, UV-vis and fluorescence spectral distortion and nonlinearity are prevalent, even in seemingly simple fluorescent solutions that comprise only one dissolved molecular fluorophore, without exogenous absorbing or scattering species. In this report, we introduce an analytical model for the quantification of fluorescence interference on UV-vis measurements and a conceptual model for mechanistically understanding the impacts of higher-order cascading optical processes on fluorescence measurements. The experimental UV-vis transmittance can be dominated by interfering fluorescence, even for fluorophore solutions with theoretical absorbance values far below the instrument's linear dynamic range (LDR). Absorption-inner-filter-effect (aIFE) correction drastically improves the fluorescence LDR. However, the efficacy of aIFE correction hinges on two competing factors that strongly depend on the fluorophore's optical properties: the degree of fluorescence interference in UV-vis and the significance of secondary or higher-order emission triggered by fluorophore absorption of emitted photons. Our research sheds light on the remarkable complexity of cascading optical processes that can occur even in the simplest fluorescent solutions. It emphasizes the necessity of critically evaluating optical spectroscopic measurements of fluorescent solutions to improve the reliability of analyzing and interpreting optical spectra. Moreover, it lays the groundwork for future development of methods capable of handling challenging samples that exceed the capabilities of the current tools.

A rapid method to monitor structural perturbations of high-concentrated therapeutic antibody solutions using Intrinsic Tryptophan Fluorescence Emission spectroscopy

Drug product development of therapeutic antibody formulations is still dictated by the risk of protein particle formation during processing or storage, which can lead to loss of potency and potential immunogenic reactions. Since structural perturbations are the main driver for irreversible protein aggregation, the conformational integrity of antibodies should be closely monitored. The present study evaluated the applicability of a plate reader-based high throughput method for Intrinsic Tryptophan Fluorescence Emission (ITFE) spectroscopy to detect protein aggregation due to protein unfolding in high-concentrated therapeutic antibody samples. The impact of fluorophore concentration on the ITFE signal in microplate readers was investigated by analysis of dilution series of two therapeutic antibodies and pure tryptophan. At low antibody concentrations (< 5 mg/mL, equivalent to 0.8 mM tryptophan), the low inner filter effect suggests a quasi-linear relationship between antibody concentration and ITFE intensity. In contrast, the constant ITFE intensity at high protein concentrations (> 40 mg/mL, equivalent to 6.1 mM tryptophan) indicate that ITFE spectroscopy measurements of IgG1 antibodies are feasible in therapeutically relevant concentrations (up to 223 mg/mL). Furthermore, the capability of the method to detect low levels of unfolding (around 1 %) was confirmed by limit of detection (LOD) determination with temperature-stressed antibody samples as degradation standards. Change of fluorescence intensity at the maximum (ΔIaM) was identified as sensitive descriptor for protein degradation, providing the lowest LOD values. The results demonstrate that ITFE spectroscopy performed in a microplate reader is a valuable tool for high-throughput monitoring of protein degradation in therapeutic antibody formulations.

Spectral characteristics of the flavones and anthocyanins present in passionflower (Passiflora incarnata)

Rich in antioxidants with a variety of flavones and anthocyanins, passionflower/fruit has been extensively used in food, beverage, medicinal, and natural dyes industries. The individual components present in passionflower are identified by extracting them in methanol, partitioning them between ethyl acetate and aqueous layers, and recording their ESI mass spectrometric data. The steady-state absorption and fluorescence spectra of the extract in methanol and dimethyl sulfoxide are recorded and the lifetime of the fluorescing species is reported. The pH dependence of the absorption spectrum confirms the presence of the anthocyanins.

Triplet Energy Transfer Mechanism in Copper Photocatalytic N- and O-Methylation

Methylation reactions are chemically simple but challenging to perform under mild and non-toxic conditions. A photochemical energy transfer strategy was merged with copper catalysis to enable fast reaction times of minutes and broad applicability to N-heterocycles, (hetero-)aromatic carboxylic acids, and drug-like molecules in high yields and good functional group tolerance. Detailed mechanistic investigations, using kinetic analysis, aprotic MS, UV/Vis, and luminescence quenching experiments revealed a triplet-triplet energy transfer mechanism between hypervalent iodine(III) reagents and readily available photosensitizers.

Deciphering DOM-metal binding using EEM-PARAFAC: Mechanisms, challenges, and perspectives

Dissolved organic matter (DOM) is a pivotal component of the biogeochemical cycles and can combine with metal ions through chelation or complexation. Understanding this process is crucial for tracing metal solubility, mobility, and bioavailability. Fluorescence excitation emission matrix (EEM) and parallel factor analysis (PARAFAC) has emerged as a popular tool in deciphering DOM-metal interactions. In this review, we primarily discuss the advantages of EEM-PARAFAC compared with other algorithms and its main limitations in studying DOM-metal binding, including restrictions in spectral considerations, mathematical assumptions, and experimental procedures, as well as how to overcome these constraints and shortcomings. We summarize the principles of EEM to uncover DOM-metal association, including why fluorescence gets quenched and some potential mechanisms that affect the accuracy of fluorescence quenching. Lastly, we review some significant and innovative research, including the application of 2D-COS in DOM-metal binding analysis, hoping to provide a fresh perspective for possible future hotspots of study. We argue the expansion of EEM applications to a broader range of areas related to natural organic matter. This extension would facilitate our exploration of the mobility and fate of metals in the environment.

Preparation of fluorescent sensor based on Zn metal-organic framework for detection and determination of raloxifene as an anticancer drug

Breast cancer is the second leading cause of death for women worldwide. Raloxifene (RLX) is a somewhat effective drug in lowering cholesterol, preventing and treating invasive breast cancer in postmenopausal women with osteoporosis, and does not interfere with breast tissue. Nevertheless, considering the possibility of risk in biological function due to excessive use of anticancer drugs and the adverse effects of drugs in wastewater on plants, animals, and aquatic, it is useful to determine the concentration of RLX in water and human body fluids. Here, a fluorescent metal-organic framework (MOF) nanoparticle based on trinuclear zinc clusters called Zn-MOF was presented, which is a high-performance and fast-response fluorescent chemosensor that can be used to detect RLX based on the fluorescence quenching medium in water. FTIR, XRD, SEM, and EDS analyses were used to identify the functional group and determine the structure and morphology of Zn-MOF. pH range 3-10. The prepared nanoparticles showed symmetric emission with excitation at a wavelength of 310.0 nm. The performance of the proposed fluorescent nanosensor was proportional to the quenching of the fluorescent signal with increasing RLX concentration at 404.0 nm; the quenching fluorescence response was linear in RLX concentration from 0.7 to 350 ng/mL with a significant detection limit equal to 0.485 nM.

Fluorescence in colloidal solutions: Scattering vs physicochemical effects on line shape

Line shapes of anionic fluorescein fluorescence in suspensions of polystyrene nanoparticles (PSNP), anionic and cationic micelles, lipid vesicles, and of laurdan in lipid vesicles were investigated. Computed second harmonic of measured spectra indicated three lines for fluorescein and two for laurdan. Accordingly, fluorescein spectra were fit to three Gaussians and laurdan spectra to two lognormal distributions. Resolved line parameters were examined against particle concentration. Scattering, although wavelength dependent, affected intensity but not line shape. Inner filter effects of scattering on line shape are insignificant because multiple scattering, redirection of scattered photons into the detector, and inclusion of scattered photons in collection and detection minimize wavelength dependent effects. Dominant effects on line width and peak positions are due to physicochemical effects of dye-particle-solvent interactions rather than scattering. Fluorescein does not interact with anionic micelles and lipid vesicles, but remains in the aqueous phase, and responds to pH increase induced by these additives. Blue shift in peak position, decrease in line width, and increase in emission intensity in these systems are like those in NaOH solutions. Fluorescein does interact with cationic micelles and hydrophobic PSNP, and its emission is red shifted. Laurdan in lipid vesicles senses interface polarity. Blue shift and decrease in line width of its emission line indicate decreasing polarity with lipid concentration. Scattering, as well as interactions affect emission intensity. Physicochemical effects distort line shape and modify intrinsic spectra. Line shape changes are better markers than intensity to investigate interactions and reactions.

Estimating Biomass and Vitality of Microalgae for Monitoring Cultures: A Roadmap for Reliable Measurements

Estimating algal biomass is a prerequisite for monitoring growth of microalgae. Especially for large-scale production sites, the measurements must be robust, reliable, fast and easy to obtain. We compare the relevant parameters, discuss potential hurdles and provide recommendations to tackle these issues. The focus is on optical density and in vivo autofluorescence of chlorophyll, which have proven to be ideal candidates for monitoring purposes. Beyond biomass, cell vitality is also crucial for maintaining cultures. While maximizing biomass yield is often the primary consideration, some applications require adverse growth conditions for the synthesis of high-quality compounds. The non-invasive technique of pulse-amplified modulated (PAM) fluorescence measurements provides an ideal tool and is increasingly being employed due to ever more affordable devices. We compared three devices and studied the robustness of the dark fluorescence yield of photosystem II (Fv/Fm) at various cell densities. Although the so-called inner filter effects influence the fluorescence signal, the resulting Fv/Fm remain stable and robust over a wide range of cell densities due to mutual effects.

Biogeochemistry of the dissolved organic matter (DOM) in the estuarine rivers of Bangladesh-Sundarbans under different anthropogenic influences

The Bangladesh-Sundarbans is the Outstanding Universal Value (OUV) articulated by UNESCO, is under different anthropogenic stress. The present study focused on the status of estuarine biogeochemistry of the dissolved organic matter (DOM) of the Bangladesh-Sundarbans using different optical methods. Four fluorophores: Peak A (230-265/408-488 nm), Peak M (290/414 nm), Peak C (365/488 nm), and Peak W (320/410 nm), and three fluorescent dissolved organic matter (fDOM) components (two humic-like, one detergent-like) were identified in the Sundarban mangrove Rivers by Excitation-Emission Matrix (EEM) and Parallel Factor (PARAFAC) analyses. Among the three components, the terrestrial-derived humic-like Component had a high intensity in five samples among six in the Bangladesh-Sundarbans. The total fluorescent intensity and calculated dissolved organic carbon (DOC) concentration were maximum in Harbaria and minimum in Kotka and Dublar char, respectively. Synchronous fluorescence spectroscopy (SFS) identified protein-like component besides humic-like DOM. The optical indices described that natural fDOM components were from terrestrial sources, were matured, and autochthonous fDOM production was low. The DOM components were relatively lower in molecular size and aromaticity in Harbaria. However, water samples in Harbaria contained organometallic compounds that had much absorbance at 254 nm wavelength. DOM components had low energy and more π-conjugated molecules in structure in the Dublar char and Kotka. Components in Dublar char had comparatively higher molecular size and weight than other sampling stations. The Harbaria and Mongla port contained more hydrophobic and less polar substances than other stations. This study will firmly add diversified notions to future research regarding mangrove forest.

Inner Filter Effect Correction for Fluorescence Measurements in Microplates Using Variable Vertical Axis Focus

The inner filter effect (IFE) hinders fluorescence measurements, limiting linear dependence of fluorescence signals to low sample concentrations. Modern microplate readers allow movement of the optical element in the vertical axis, changing the relative position of the focus and thus the sample geometry. The proposed Z-position IFE correction method requires only two fluorescence measurements at different known vertical axis positions (z-positions) of the optical element for the same sample. Samples of quinine sulfate, both pure and in mixtures with potassium dichromate, showed a linear dependence of corrected fluorescence on fluorophore concentration (R2 > 0.999), up to Aex ≈ 2 and Aem ≈ 0.5. The correction extended linear fluorescence response over ≈98% of the concentration range with ≈1% deviation of the calibration slope, effectively eliminating the need for sample dilution or separate absorbance measurements to account for IFE. The companion numerical IFE correction method further eliminates the need for any geometric parameters with similar results. Both methods are available online at https://ninfe.science.

Spectroscopic study of L-DOPA and dopamine binding on novel gold nanoparticles towards more efficient drug-delivery system for Parkinson's disease

Nano-drug delivery systems may potentially overcome current challenges in the treatment of Parkinson's disease (PD) by enabling targeted delivery and more efficient blood-brain penetration ability. This study investigates novel gold nanoparticles (AuNPs) to be used as delivery systems for L-DOPA and dopamine by considering their binding capabilities in the presence and absence of a model protein, bovine serum albumin (BSA). Four different AuNPs were prepared by surface functionalization with polyethylene glycol (PEG), 1-adamantylamine (Ad), 1-adamantylglycine (AdGly), and peptidoglycan monomer (PGM). Fluorescence and UV-Vis measurements demonstrated the strongest binding affinity and L-DOPA/dopamine loading efficiency for PGM-functionalized AuNPs with negligible impact of the serum protein presence. Thermodynamic analysis revealed a spontaneous binding process between L-DOPA or dopamine and AuNPs that predominantly occurred through van der Waals interactions/hydrogen bonds or electrostatic interactions. These results represent PGM-functionalized AuNPs as the most efficient at L-DOPA and dopamine binding with a potential to become a drug-delivery system for neurodegenerative diseases. Detailed investigation of L-DOPA/dopamine interactions with different AuNPs was described here for the first time. Moreover, this study highlights a cost- and time-effective methodology for evaluating drug binding to nanomaterials.

In situ quantification of poly(3-hydroxybutyrate) and biomass in Cupriavidus necator by a fluorescence spectroscopic assay

Abstract

Fluorescence spectroscopy offers a cheap, simple, and fast approach to monitor poly(3-hydroxybutyrate) (PHB) formation, a biodegradable polymer belonging to the biodegradable polyester class polyhydroxyalkanoates. In the present study, a fluorescence and side scatter-based spectroscopic setup was developed to monitor in situ biomass, and PHB formation of biotechnological applied Cupriavidus necator strain. To establish PHB quantification of C. necator, the dyes 2,2-difluoro-4,6,8,10,12-pentamethyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaene (BODIPY^493/503), ethyl 5-methoxy-1,2-bis(3-methylbut-2-enyl)-3-oxoindole-2-carboxylate (LipidGreen2), and 9-(diethylamino)benzo[a]phenoxazin-5-one (Nile red) were compared with each other. Fluorescence staining efficacy was obtained through 3D-excitation-emission matrix and design of experiments. The coefficients of determination were ≥ 0.98 for all three dyes and linear to the high-pressure liquid chromatography obtained PHB content, and the side scatter to the biomass concentration. The fluorescence correlation models were further improved by the incorporation of the biomass-related side scatter. Afterward, the resulting regression fluorescence models were successfully applied to nitrogen-deficit, phosphor-deficit, and NaCl-stressed C. necator cultures. The highest transferability of the regression models was shown by using LipidGreen2. The novel approach opens a tailor-made way for a fast and simultaneous detection of the crucial biotechnological parameters biomass and PHB content during fermentation.

Key points

• Intracellular quantification of PHB and biomass using fluorescence spectroscopy.

• Optimizing fluorescence staining conditions and 3D-excitation-emission matrix.

• PHB was best obtained by LipidGreen2, followed by BODIPDY^493/503 and Nile red.

Graphical abstract

Supplementary Information

The online version contains supplementary material available at 10.1007/s00253-021-11670-8.

The use of LipidGreen2 for visualization and quantification of intracellular Poly(3-hydroxybutyrate) in Cupriavidus necator

Numerous studies have been conducted to develop a rapid protocol for the quantification of poly(3-hydroxybutyrate) during bacterial fermentation as an alternative to time-consuming gravimetric or analytical methods. Fluorescence spectroscopy is one of the most promising approaches. In this study, it could be demonstrated that the novel fluorescent probe LipidGreen2 is able to stain selectively poly(3-hydroxybutyrate) in Cupriavidus necator. Optimal excitation and emission wavelengths were evaluated using 3D-Excitation-Emission-Matrix, displaying the best intensities between 440-460 nm and 490-520 nm for excitation and emission, respectively. The lipophilic fluorophore LipidGreen2 showed a high long-term stability even when incubated under ambient lighting. Due to a strong linear relationship between side scatter and biomass concentration, the influence of the inner filter effects could be incorporated, and adjusting the sample to a specific OD is thus superfluous. The developed method allows a very accurate quantification of poly(3-hydroxybutyrate) in just 15 min, following a comprehensible and simple protocol. It is also excellently suited for bioimaging of intracellular poly(3-hydroxybutyrate) granules.

Role of non-fluorescent chromophores in inner filter effect correction and PARAFAC decomposition

Numerous studies have shown the impact of inner filter effect (IFE) on the fluorescence signal. IFE reduces the fluorescence intensity and distorts the fluorescence peak shape and position, through the absorption of the emitted radiation by the sample components. In this study, we aimed to understand the role of a non-fluorescing chromophore in IFE correction and PARAFAC decomposition. Solutions of three fluorophores, tryptophan, fluorescein and quinine sulfate, and an absorbing compound, green ink, have been prepared using the controlled dilution approach (CDA). PARAFAC identified three components associated with quinine sulfate, fluorescein and an IFE artifact, which was caused by a shift in peak position. Results showed that the absorption of the chromophore played an important role in component determination. We observed that CDA-PARAFAC was able to correct the quinine sulfate and fluorescein signals, and to suppress the IFE artifact component. However, the method was not effective in removing the IFE impact at high concentrations. The results have significant implications on the analysis of samples that contain complex mixtures of fluorophores and chromophores, such as colored natural organic matter or nutrients, like NO₃^2-.