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For: Laikov DN. A new parametrizable model of molecular electronic structure. J Chem Phys 2012;135:134120. [PMID: 21992295 DOI: 10.1063/1.3646498] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
Number Cited by Other Article(s)
1
Sosulin IS, Ryan DH, Lisouskaya A. Radicals from tributyl phosphate decomposition: a combined electron paramagnetic resonance spectroscopic and computational chemistry investigation. Phys Chem Chem Phys 2023;25:29350-29357. [PMID: 37877227 DOI: 10.1039/d3cp03584k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
2
Khatmullina KG, Slesarenko NA, Chernyak AV, Baymuratova GR, Yudina AV, Berezin MP, Tulibaeva GZ, Slesarenko AA, Shestakov AF, Yarmolenko OV. New Network Polymer Electrolytes Based on Ionic Liquid and SiO2 Nanoparticles for Energy Storage Systems. MEMBRANES 2023;13:548. [PMID: 37367752 DOI: 10.3390/membranes13060548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 05/19/2023] [Accepted: 05/22/2023] [Indexed: 06/28/2023]
3
Wang Z, Neese F. Development of NOTCH, an all-electron, beyond-NDDO semiempirical method: Application to diatomic molecules. J Chem Phys 2023;158:2889026. [PMID: 37154284 DOI: 10.1063/5.0141686] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Accepted: 04/18/2023] [Indexed: 05/10/2023]  Open
4
Morozov B, Oshchepkov AS, Klemt I, Agafontsev AM, Krishna S, Hampel F, Xu HG, Mokhir A, Guldi D, Kataev E. Supramolecular Recognition of Cytidine Phosphate in Nucleotides and RNA Sequences. JACS AU 2023;3:964-977. [PMID: 37006770 PMCID: PMC10052242 DOI: 10.1021/jacsau.2c00658] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Revised: 12/19/2022] [Accepted: 12/19/2022] [Indexed: 06/19/2023]
5
Synthesis of Synthetic Musks: A Theoretical Study Based on the Relationships between Structure and Properties at Molecular Scale. Int J Mol Sci 2023;24:ijms24032768. [PMID: 36769089 PMCID: PMC9917709 DOI: 10.3390/ijms24032768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 01/28/2023] [Accepted: 01/30/2023] [Indexed: 02/04/2023]  Open
6
Chernyak AV, Slesarenko NA, Slesarenko AA, Baymuratova GR, Tulibaeva GZ, Yudina AV, Volkov VI, Shestakov AF, Yarmolenko OV. Effect of the Solvate Environment of Lithium Cations on the Resistance of the Polymer Electrolyte/Electrode Interface in a Solid-State Lithium Battery. MEMBRANES 2022;12:1111. [PMID: 36363666 PMCID: PMC9694555 DOI: 10.3390/membranes12111111] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 11/01/2022] [Accepted: 11/04/2022] [Indexed: 06/16/2023]
7
Fabrizio A, Briling KR, Corminboeuf C. SPAHM: the spectrum of approximated Hamiltonian matrices representations. DIGITAL DISCOVERY 2022;1:286-294. [PMID: 35769206 PMCID: PMC9189859 DOI: 10.1039/d1dd00050k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 04/04/2022] [Indexed: 11/21/2022]
8
Oshchepkov AS, Reznichenko O, Xu D, Morozov BS, Granzhan A, Kataev EA. Dye-functionalized phosphate-binding macrocycles: from nucleotide to G-quadruplex recognition and "turn-on" fluorescence sensing. Chem Commun (Camb) 2021;57:10632-10635. [PMID: 34581337 DOI: 10.1039/d1cc04096k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
9
Briling KR, Fabrizio A, Corminboeuf C. Impact of quantum-chemical metrics on the machine learning prediction of electron density. J Chem Phys 2021;155:024107. [PMID: 34266253 DOI: 10.1063/5.0055393] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Makarova TM, Makarov GI. Investigation of Allosteric Effect of 2,8-Dimethylation of A2503 in E. coli 23S rRNA by Molecular-Dynamics Simulations. BIOCHEMISTRY (MOSCOW) 2021;85:1458-1467. [PMID: 33280585 DOI: 10.1134/s0006297920110139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
11
Binding and Sensing Properties of a Hybrid Naphthalimide-Pyrene Aza-Cyclophane towards Nucleotides in an Aqueous Solution. Molecules 2021;26:molecules26040980. [PMID: 33673272 PMCID: PMC7918853 DOI: 10.3390/molecules26040980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 02/08/2021] [Accepted: 02/09/2021] [Indexed: 11/20/2022]  Open
12
Agafontsev AM, Shumilova TA, Oshchepkov AS, Hampel F, Kataev EA. Ratiometric Detection of ATP by Fluorescent Cyclophanes with Bellows-Type Sensing Mechanism. Chemistry 2020;26:9991-9997. [PMID: 32497327 PMCID: PMC7496914 DOI: 10.1002/chem.202001523] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 06/01/2020] [Indexed: 12/13/2022]
13
Yudina AV, Baymuratova GR, Tulibaeva GZ, Litvinov AL, Shestakov AF, Yarmolenko OV. Conductivity increase effect in nanocomposite polymer gel electrolytes: manifestation in the IR spectra. Russ Chem Bull 2020. [DOI: 10.1007/s11172-020-2923-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
14
Oshchepkov AS, Namashivaya SSR, Khrustalev VN, Hampel F, Laikov DN, Kataev EA. Control of Photoisomerization of an Azoazacryptand by Anion Binding and Cucurbit[8]uril Encapsulation in an Aqueous Solution. J Org Chem 2020;85:9255-9263. [PMID: 32584036 DOI: 10.1021/acs.joc.0c01260] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Briling KR, Laikov DN. Heptalene Synthesis by Addition of Aryl Acetylenes to Azulenes. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2020. [DOI: 10.1134/s1070428020040028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
16
Khatymov RV, Shchukin PV, Muftakhov MV, Yakushchenko IK, Yarmolenko OV, Pankratyev EY. A unified statistical RRKM approach to the fragmentation and autoneutralization of metastable molecular negative ions of hexaazatrinaphthylenes. Phys Chem Chem Phys 2020;22:3073-3088. [PMID: 31965122 DOI: 10.1039/c9cp05397b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
17
Morozov BS, Namashivaya SSR, Zakharko MA, Oshchepkov AS, Kataev EA. Anthracene-Based Amido-Amine Cage Receptor for Anion Recognition under Neutral Aqueous Conditions. ChemistryOpen 2020;9:171-175. [PMID: 32025461 PMCID: PMC6996565 DOI: 10.1002/open.201900309] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 11/08/2019] [Indexed: 12/13/2022]  Open
18
Laikov DN, Briling KR. Atomic effective potentials for starting molecular electronic structure calculations. Theor Chem Acc 2020. [DOI: 10.1007/s00214-019-2521-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Fizer M, Slivka M, Baumer V, Slivka M, Fizer O. Alkylation of 2-oxo(thioxo)-thieno[2,3-d]pyrimidine-4-ones: Experimental and theoretical study. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.07.105] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
20
Yarzhemsky VG, D’yakov YA, Izotov AD, Izotova VO. Chemical Properties of Gold Clusters as Dependent on the Structure and Doping by 5d Elements. RUSS J INORG CHEM+ 2019. [DOI: 10.1134/s0036023619100188] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
21
Scutelnic V, Rizzo TR. Cryogenic Ion Spectroscopy for Identification of Monosaccharide Anomers. J Phys Chem A 2019;123:2815-2819. [PMID: 30829486 DOI: 10.1021/acs.jpca.9b00527] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
22
Laikov DN. Atomic basis functions for molecular electronic structure calculations. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2432-3] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Kim IP, Martynenko VM, Chernyak AV, Shestakova AF, Benderskii VA. Fluorinated Organosilicon Oligomers with End Groups Capable of Further Polycondensation. HIGH ENERGY CHEMISTRY 2019. [DOI: 10.1134/s0018143919020073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
24
Shestakov AF, Romanyuk OE, Mumyatov AV, Luchkin SY, Slesarenko AA, Yarmolenko OV, Stevenson KJ, Troshin PA. Theoretical and experimental evidence for irreversible lithiation of the conformationally flexible polyimide: Impact on battery performance. J Electroanal Chem (Lausanne) 2019. [DOI: 10.1016/j.jelechem.2019.01.063] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
25
Wu X, Dral PO, Koslowski A, Thiel W. Big data analysis of ab Initio molecular integrals in the neglect of diatomic differential overlap approximation. J Comput Chem 2019;40:638-649. [PMID: 30549072 DOI: 10.1002/jcc.25748] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2018] [Revised: 10/15/2018] [Accepted: 10/16/2018] [Indexed: 12/14/2022]
26
Ryazantsev SV, Tyurin DA, Nuzhdin KB, Feldman VI, Khriachtchev L. The HKrCCH⋯CO2 complex: an ab initio and matrix-isolation study. Phys Chem Chem Phys 2019;21:3656-3661. [DOI: 10.1039/c8cp04327b] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
27
Sharapa DI, Genaev A, Cavallo L, Minenkov Y. A Robust and Cost‐Efficient Scheme for Accurate Conformational Energies of Organic Molecules. Chemphyschem 2018;20:92-102. [DOI: 10.1002/cphc.201801063] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2018] [Indexed: 11/09/2022]
28
Laikov DN. A reversible numerical integrator of the isokinetic equations of motion. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2344-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
29
Briling KR. Comment on "A new parametrizable model of molecular electronic structure" [J. Chem. Phys. 135, 134120 (2011)]. J Chem Phys 2018;147:157101. [PMID: 29055299 DOI: 10.1063/1.5000525] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Smith DGA, Burns LA, Sirianni DA, Nascimento DR, Kumar A, James AM, Schriber JB, Zhang T, Zhang B, Abbott AS, Berquist EJ, Lechner MH, Cunha LA, Heide AG, Waldrop JM, Takeshita TY, Alenaizan A, Neuhauser D, King RA, Simmonett AC, Turney JM, Schaefer HF, Evangelista FA, DePrince AE, Crawford TD, Patkowski K, Sherrill CD. Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development. J Chem Theory Comput 2018;14:3504-3511. [DOI: 10.1021/acs.jctc.8b00286] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
31
Orel VB, Vitkovskaya NM, Kobychev VB, Trofimov BA. Transition-Metal-Free C-Vinylation of Ketones with Acetylenes: A Quantum-Chemical Rationalization of Similarities and Differences in Catalysis by Superbases MOH/DMSO and tBuOM/DMSO (M = Na, K). J Org Chem 2018;83:3719-3726. [PMID: 29505724 DOI: 10.1021/acs.joc.8b00071] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
32
Self-assembly through hydrogen bonding and photochemical properties of supramolecular complexes of bis(18-crown-6)stilbene with alkanediammonium ions. J Photochem Photobiol A Chem 2017. [DOI: 10.1016/j.jphotochem.2017.03.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
33
Peraza A, Hernández R, Ruette F. Fundamental relationships between elementary functionals in quantum chemistry. An application for H2 and H2+. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2016.12.012] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
34
Vitkovskaya NM, Orel VB, Kobychev VB, Bobkov AS, Larionova EY, Trofimov BA. Exploring acetylene chemistry in superbasic media: A theoretical study of the effect of water on vinylation and ethynylation reactions with acetylene in KOH/DMSO and NaOH/DMSO systems. J PHYS ORG CHEM 2016. [DOI: 10.1002/poc.3669] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
35
Ushakov EN, Vedernikov AI, Lobova NA, Dmitrieva SN, Kuz'mina LG, Moiseeva AA, Howard JAK, Alfimov MV, Gromov SP. Supramolecular Dimerization and [2 + 2] Photocycloaddition Reactions of Crown Ether Styryl Dyes Containing a Tethered Ammonium Group: Structure-Property Relationships. J Phys Chem A 2015;119:13025-37. [PMID: 26650887 DOI: 10.1021/acs.jpca.5b10758] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
36
Ushakov EN, Vedernikov AI, Sazonov SK, Kuz´mina LG, Alfimov MV, Howard JAK, Gromov SP. Synthesis and photochemical study of a supramolecular pseudodimeric complex of 4-styrylpyridinium derivatives. Russ Chem Bull 2015. [DOI: 10.1007/s11172-015-0901-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
37
Yilmazer ND, Korth M. Enhanced semiempirical QM methods for biomolecular interactions. Comput Struct Biotechnol J 2015;13:169-75. [PMID: 25848495 PMCID: PMC4372622 DOI: 10.1016/j.csbj.2015.02.004] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 02/17/2015] [Accepted: 02/19/2015] [Indexed: 12/21/2022]  Open
38
Kataev EA, Shumilova TA. Investigation of structural mimetics of natural phosphate ion binding motifs. Molecules 2015;20:3354-70. [PMID: 25690293 PMCID: PMC6272573 DOI: 10.3390/molecules20023354] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2014] [Revised: 01/19/2015] [Accepted: 02/12/2015] [Indexed: 11/20/2022]  Open
39
Laikov DN. Penrose nanotiles: design of the thin and thick rhomb molecules to self-assemble into a quasicrystal. RSC Adv 2014. [DOI: 10.1039/c4ra01354a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
40
Kataev E, Arnold R, Rüffer T, Lang H. Fluorescence detection of adenosine triphosphate in an aqueous solution using a combination of copper(II) complexes. Inorg Chem 2012;51:7948-50. [PMID: 22789028 DOI: 10.1021/ic300805q] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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