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Leri AC, Hettithanthri O, Bolan S, Zhang T, Unrine J, Myneni S, Nachman DR, Tran HT, Phillips AJ, Hou D, Wang Y, Vithanage M, Padhye LP, Jasemi Zad T, Heitz A, Siddique KHM, Wang H, Rinklebe J, Kirkham MB, Bolan N. Bromine contamination and risk management in terrestrial and aquatic ecosystems. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:133881. [PMID: 38422740 DOI: 10.1016/j.jhazmat.2024.133881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 01/18/2024] [Accepted: 02/22/2024] [Indexed: 03/02/2024]
Abstract
Bromine (Br) is widely distributed through the lithosphere and hydrosphere, and its chemistry in the environment is affected by natural processes and anthropogenic activities. While the chemistry of Br in the atmosphere has been comprehensively explored, there has never been an overview of the chemistry of Br in soil and aquatic systems. This review synthesizes current knowledge on the sources, geochemistry, health and environmental threats, remediation approaches, and regulatory guidelines pertaining to Br pollution in terrestrial and aquatic environments. Volcanic eruptions, geothermal streams, and seawater are the major natural sources of Br. In soils and sediments, Br undergoes natural cycling between organic and inorganic forms, with bromination reactions occurring both abiotically and through microbial activity. For organisms, Br is a non-essential element; it is passively taken up by plant roots in the form of the Br- anion. Elevated Br- levels can limit plant growth on coastal soils of arid and semi-arid environments. Br is used in the chemical industry to manufacture pesticides, flame retardants, pharmaceuticals, and other products. Anthropogenic sources of organobromine contaminants in the environment are primarily wastewater treatment, fumigants, and flame retardants. When aqueous Br- reacts with oxidants in water treatment plants, it can generate brominated disinfection by-products (DBPs), and exposure to DBPs is linked to adverse human health effects including increased cancer risk. Br- can be removed from aquatic systems using adsorbents, and amelioration of soils containing excess Br- can be achieved by leaching, adding various amendments, or phytoremediation. Developing cost-effective methods for Br- removal from wastewater would help address the problem of toxic brominated DBPs. Other anthropogenic organobromines, such as polybrominated diphenyl ether (PBDE) flame retardants, are persistent, toxic, and bioaccumulative, posing a challenge in environmental remediation. Future research directives for managing Br pollution sustainably in various environmental settings are suggested here.
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Affiliation(s)
- Alessandra C Leri
- Department of Natural Sciences, Marymount Manhattan College, 221 E 71st St., New York, NY 10021, United States.
| | - Oshadi Hettithanthri
- Ecosphere Resilience Research Centre, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, Sri Lanka
| | - Shiv Bolan
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, Western Australia 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia 6009, Australia; Healthy Environments And Lives (HEAL) National Research Network, Canberra, Australia
| | - Tao Zhang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention-Control and Remediation, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, People's Republic of China
| | - Jason Unrine
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546, United States; Kentucky Water Research Institute, University of Kentucky, Lexington, KY 40506, United States
| | - Satish Myneni
- Department of Geosciences, Princeton Univ., Princeton, NJ 08544, United States
| | - Danielle R Nachman
- Johns Hopkins University Applied Physics Laboratory, Laurel, MD, United States
| | - Huu Tuan Tran
- Laboratory of Ecology and Environmental Management, Science and Technology Advanced Institute, Van Lang University, Ho Chi Minh City, Viet Nam; Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City, Viet Nam
| | - Ankur J Phillips
- Department of Microbiology, College of Basic Sciences and Humanities, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, Uttarakhand 263145, India
| | - Deyi Hou
- School of Environment, Tsinghua University, Beijing 100084, People's Republic of China
| | - Yidong Wang
- School of Environment, Tsinghua University, Beijing 100084, People's Republic of China
| | - Meththika Vithanage
- Ecosphere Resilience Research Centre, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, 10250, Sri Lanka; UWA School of Agriculture and Environment, The University of Western Australia, Perth, Western Australia 6009, Australia; Sustainability Cluster, University of Petroleum and Energy Studies, Dehradun, India
| | - Lokesh P Padhye
- Department of Civil and Environmental Engineering, Faculty of Engineering, The University of Auckland, Auckland 1010, New Zealand
| | - Tahereh Jasemi Zad
- Department of Civil and Environmental Engineering, Faculty of Engineering, The University of Auckland, Auckland 1010, New Zealand
| | - Anna Heitz
- Curtin Water Quality Research Centre, Department of Chemistry, Curtin University, GPO Box U1987, Perth, WA 6845, Australia
| | - Kadambot H M Siddique
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, Western Australia 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia 6009, Australia
| | - Hailong Wang
- Biochar Engineering Technology Research Center of Guangdong Province, School of Environmental and Chemical Engineering, Foshan University, Foshan, Guangdong 528000, People's Republic of China; Key Laboratory of Soil Contamination Bioremediation of Zhejiang Province, Zhejiang A&F University, Hangzhou, Zhejiang 311300, People's Republic of China
| | - Jörg Rinklebe
- University of Wuppertal, School of Architecture and Civil Engineering, Institute of Foundation Engineering, Water, and Waste-Management, Laboratory of Soil, and Groundwater-Management, Pauluskirchstraße 7, Wuppertal 42285, Germany
| | - M B Kirkham
- Department of Agronomy, Throckmorton Plant Sciences Center, Kansas State University, Manhattan, KS 66506, United States
| | - Nanthi Bolan
- UWA School of Agriculture and Environment, The University of Western Australia, Perth, Western Australia 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, Perth, Western Australia 6009, Australia; Healthy Environments And Lives (HEAL) National Research Network, Canberra, Australia
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Yu K, Zhang K, Jakob RP, Maier T, Ward TR. An artificial nickel chlorinase based on the biotin-streptavidin technology. Chem Commun (Camb) 2024; 60:1944-1947. [PMID: 38277163 PMCID: PMC10863421 DOI: 10.1039/d3cc05847f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Accepted: 01/17/2024] [Indexed: 01/27/2024]
Abstract
Herein, we report on an artificial nickel chlorinase (ANCase) resulting from anchoring a biotinylated nickel-based cofactor within streptavidin (Sav). The resulting ANCase was efficient for the chlorination of diverse C(sp3)-H bonds. Guided by the X-ray analysis of the ANCase, the activity of the artificial chlorinase could be significantly improved. This approach opens interesting perspectives for late-stage functionalization of organic intermediates as it complements biocatalytic chlorination strategies.
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Affiliation(s)
- Kun Yu
- Department of Chemistry, University of Basel, Mattenstrasse 22, Basel, CH-4058, Switzerland.
| | - Kailin Zhang
- Department of Chemistry, University of Basel, Mattenstrasse 22, Basel, CH-4058, Switzerland.
| | - Roman P Jakob
- Biozentrum, University of Basel, Spitalstrasse 41, Basel, CH-4056, Switzerland
| | - Timm Maier
- Biozentrum, University of Basel, Spitalstrasse 41, Basel, CH-4056, Switzerland
| | - Thomas R Ward
- Department of Chemistry, University of Basel, Mattenstrasse 22, Basel, CH-4058, Switzerland.
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Durante CA, Manhães B, Santos-Neto EB, Azevedo ADF, Crespo EA, Lailson-Brito J. Natural and anthropogenic organic brominated compounds in the southwestern Atlantic ocean: Bioaccumulation in coastal and oceanic dolphin species. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 341:123005. [PMID: 37995959 DOI: 10.1016/j.envpol.2023.123005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 11/14/2023] [Accepted: 11/17/2023] [Indexed: 11/25/2023]
Abstract
Marine pollution is considered a current driver of change in the oceans and despite the urgency to develop more studies, there is limited information in the southern hemisphere. This study aimed to analyze the levels and profiles of natural (MeO-PBDEs) and anthropogenic (BFRs: PBDEs, HBB, PBEB) organic brominated compounds in adipose tissue of two species of dolphins with different distribution and trophic requirements from the Southwestern Atlantic Ocean; the short-beaked common dolphin (Delphinus delphis) and the Fraser's dolphin (Lagenodelphis hosei). In addition, we aim to investigate maternal transfer and biological pattern relationship (sex, age, sexual maturity) in short-beaked common dolphin bioaccumulation. The levels of both groups of contaminants were in the same order of magnitude as those reported for other marine mammals on both a regional and global scale. BFRs profiles were dominated by BDE 28 and BDE 47 in short-beaked common dolphin and Fraser's dolphin, respectively, whereas 2-MeO-BDE 68 was the most abundant natural compound in both species. Evidence of maternal transfer, temporary increase in BDE 154 levels and no influence of sex, age, or sexual maturity on brominated compound concentration was observed in short-beaked common dolphin. This study fills a gap in the knowledge of the Southwestern Atlantic Ocean providing new information on emerging organic pollutants bioavailability for dolphins and, therefore, for the different trophic webs. In addition, it serves as a baseline for further contamination assessments.
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Affiliation(s)
- Cristian Alberto Durante
- Laboratorio de Mamíferos Marinos - Centro para el Estudio de Sistemas Marinos (CESIMAR - CONICET), Bv. Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina.
| | - Bárbara Manhães
- Laboratório de Mamíferos Aquáticos e Bioindicadores "Profa. Izabel Gurgel" (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, 20530-013, Rio de Janeiro, RJ, Brazil.
| | - Elitieri Batista Santos-Neto
- Laboratório de Mamíferos Aquáticos e Bioindicadores "Profa. Izabel Gurgel" (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, 20530-013, Rio de Janeiro, RJ, Brazil.
| | - Alexandre de Freitas Azevedo
- Laboratório de Mamíferos Aquáticos e Bioindicadores "Profa. Izabel Gurgel" (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, 20530-013, Rio de Janeiro, RJ, Brazil.
| | - Enrique Alberto Crespo
- Laboratorio de Mamíferos Marinos - Centro para el Estudio de Sistemas Marinos (CESIMAR - CONICET), Bv. Brown 2915, U9120ACD, Puerto Madryn, Chubut, Argentina.
| | - José Lailson-Brito
- Laboratório de Mamíferos Aquáticos e Bioindicadores "Profa. Izabel Gurgel" (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, 20530-013, Rio de Janeiro, RJ, Brazil.
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Vennelakanti V, Li GL, Kulik HJ. Why Nonheme Iron Halogenases Do Not Fluorinate C-H Bonds: A Computational Investigation. Inorg Chem 2023; 62:19758-19770. [PMID: 37972340 DOI: 10.1021/acs.inorgchem.3c03215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
Selective halogenation is necessary for a range of fine chemical applications, including the development of therapeutic drugs. While synthetic processes to achieve C-H halogenation require harsh conditions, enzymes such as nonheme iron halogenases carry out some types of C-H halogenation, i.e., chlorination or bromination, with ease, while others, i.e., fluorination, have never been observed in natural or engineered nonheme iron enzymes. Using density functional theory and correlated wave function theory, we investigate the differences in structural and energetic preferences of the smaller fluoride and the larger chloride or bromide intermediates throughout the catalytic cycle. Although we find that the energetics of rate-limiting hydrogen atom transfer are not strongly impacted by fluoride substitution, the higher barriers observed during the radical rebound reaction for fluoride relative to chloride and bromide contribute to the difficulty of C-H fluorination. We also investigate the possibility of isomerization playing a role in differences in reaction selectivity, and our calculations reveal crucial differences in terms of isomer energetics of the key ferryl intermediate between fluoride and chloride/bromide intermediates. While formation of monodentate isomers believed to be involved in selective catalysis is shown for chloride and bromide intermediates, we find that formation of the fluoride monodentate intermediate is not possible in our calculations, which lack additional stabilizing interactions with the greater protein environment. Furthermore, the shorter Fe-F bonds are found to increase isomerization reaction barriers, suggesting that incorporation of residues that form a halogen bond with F and elongate Fe-F bonds could make selective C-H fluorination possible in nonheme iron halogenases. Our work highlights the differences between the fluoride and chloride/bromide intermediates and suggests potential steps toward engineering nonheme iron halogenases to enable selective C-H fluorination.
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Affiliation(s)
- Vyshnavi Vennelakanti
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Grace L Li
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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5
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Patra AK, Puchala R. Methane mitigation in ruminants with structural analogues and other chemical compounds targeting archaeal methanogenesis pathways. Biotechnol Adv 2023; 69:108268. [PMID: 37793598 DOI: 10.1016/j.biotechadv.2023.108268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Revised: 09/20/2023] [Accepted: 09/30/2023] [Indexed: 10/06/2023]
Abstract
Ruminants are responsible for enteric methane production contributing significantly to the anthropogenic greenhouse gases in the atmosphere. Moreover, dietary energy is lost as methane gas without being available for animal use. Therefore, many mitigation strategies aiming at interventions at animals, diet, and microbiota have been explored by researchers. Specific chemical analogues targeting the enzymes of the methanogenic pathway appear to be more effective in specifically inhibiting the growth of methane-producing archaea without hampering another microbiome, particularly, cellulolytic microbiota. The targets of methanogenesis reactions that have been mainly investigated in ruminal fluid include methyl coenzyme M reductase (halogenated sulfonate and nitrooxy compounds), corrinoid enzymes (halogenated aliphatic compounds), formate dehydrogenase (nitro compounds, e.g., nitroethane and 2-nitroethanol), and deazaflavin (F420) (pterin and statin compounds). Many other potential metabolic reaction targets in methanogenic archaea have not been evaluated properly. The analogues are specifically effective inhibitors of methanogens, but their efficacy to lower methanogenesis over time reduces due to the metabolism of the compounds by other microbiota or the development of resistance mechanisms by methanogens. In this short review, methanogen populations inhabited in the rumen, methanogenesis pathways and methane analogues, and other chemical compounds specifically targeting the metabolic reactions in the pathways and methane production in ruminants have been discussed. Although many methane inhibitors have been evaluated in lowering methane emission in ruminants, advancement in unravelling the molecular mechanisms of specific methane inhibitors targeting the metabolic pathways in methanogens is very limited.
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Affiliation(s)
- Amlan Kumar Patra
- American Institute for Goat Research, Langston University, Langston, OK 73050, USA.
| | - Ryszard Puchala
- American Institute for Goat Research, Langston University, Langston, OK 73050, USA; Applied Physiology Unit, Military Institute of Hygiene and Epidemiology, Kozielska 4, Warsaw, Poland
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Mahamed S, Motal R, Govender T, Dlamini N, Khuboni K, Hadeb Z, Shaik BB, Moodley K, Balaso Mohite S, Karpoormath R. A concise review on marine bromopyrrole alkaloids as anticancer agents. Bioorg Med Chem Lett 2023; 80:129102. [PMID: 36496202 DOI: 10.1016/j.bmcl.2022.129102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 11/30/2022] [Accepted: 12/01/2022] [Indexed: 12/12/2022]
Abstract
Natural products have been the most important sources of chemically diverse raw materials that have inspired pharmaceutical discoveries over the past few decades. Many pharmaceutical companies are utilizing plant extracts to develop relatively crude therapeutic formulations. The interesting chemicals identified as natural products are derived from the phenomenon of biodiversity, where the interactions between the organisms and their environment formulate the diverse and complex chemical entities within them that enhance their survival and competitiveness. Marine sponges are rich sources of natural products and have provided an infinite supply of bioactive metabolites. Bromopyrrole alkaloids are a good example of marine metabolites, have a broad range of biological activity, and represent a fascinating example of chemical diversity of secondary metabolites elaborated by marine invertebrates. The isolation and synthesis of this structural class have been investigated, resulting in a series of bromopyrrole alkaloids with potential lead hits. This review presents the detailed isolation and anticancer activity of marine bromopyrrole alkaloids, and will be of interest to the wider research community both in academic and industrial settings.
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Affiliation(s)
- Safia Mahamed
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Raeesa Motal
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Titus Govender
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Nompilo Dlamini
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Kwanele Khuboni
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Zamahlubi Hadeb
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Baji Baba Shaik
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Kimeshni Moodley
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Sachin Balaso Mohite
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa
| | - Rajshekhar Karpoormath
- Department of Pharmaceutical Chemistry, Discipline of Pharmaceutical Sciences, College of Health Sciences, University of KwaZulu-Natal (Westville), Durban 4000, South Africa.
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Yun D, de Serrano V, Ghiladi RA. Oxidation of bisphenol A (BPA) and related compounds by the multifunctional catalytic globin dehaloperoxidase. J Inorg Biochem 2023; 238:112020. [PMID: 36272837 DOI: 10.1016/j.jinorgbio.2022.112020] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/30/2022] [Accepted: 09/30/2022] [Indexed: 11/06/2022]
Abstract
Dehaloperoxidase (DHP) from the marine polychaete Amphitrite ornata is a multifunctional enzyme that possesses peroxidase, peroxygenase, oxidase and oxygenase activities. Herein, we investigated the reactivity of DHP B with bisphenol A (BPA) and related compounds (bisphenol E, bisphenol F, tetrachlorobisphenol A, 2,2'-biphenol, 3,3'-biphenol, 4,4'-biphenol, and 3,3'-dibromo-4,4'-biphenol). As a previously unknown substrate for DHP B, BPA (as a representative substrate) is an endocrine disruptor widely used in polycarbonate and epoxy resins, thus resulting in human exposure. Reactivity studies with these substrates were investigated using high performance liquid chromatography (HPLC), and their corresponding oxidation products were determined by mass spectrometry (GC-MS/ LC-MS). BPA undergoes oxidation in the presence of DHP B and hydrogen peroxide yielding two cleavage products (4-isopropenylphenol and 4-(2-hydroxypropan-2-yl)phenol), and oligomers with varying degrees of oxidation. 18O-labeling studies confirmed that the O-atom incorporated into the products was derived exclusively from water, consistent with substrate oxidation via a peroxidase-based mechanism. The X-ray crystal structures of DHP bound with bisphenol E (1.48 Å), bisphenol F (1.75 Å), 2,2'-biphenol (1.90 Å) and 3,3'-biphenol (1.30 Å) showed substrate binding sites are in the distal pocket of the heme cofactor, similar to other previously studied DHP substrates. Stopped-flow UV-visible spectroscopy was utilized to investigate the mechanistic details and enzyme oxidation states during substrate turnover, and a reaction mechanism is proposed. The data presented here strongly suggest that DHP B can catalyze the oxidation of bisphenols and biphenols, thus providing evidence of how infaunal invertebrates can contribute to the biotransformation of these marine pollutants.
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Affiliation(s)
- Dongju Yun
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, United States
| | - Vesna de Serrano
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, United States
| | - Reza A Ghiladi
- Department of Chemistry, North Carolina State University, Raleigh, NC 27695-8204, United States.
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Singh KS, Singh A. Chemical diversities, biological activities and chemical synthesis of marine diphenyl ether and their derivatives. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Wang J, Pang X, Chen C, Gao C, Zhou X, Liu Y, Luo X. Chemistry, Biosynthesis, and Biological Activity of Halogenated Compounds Produced by Marine Microorganisms. CHINESE J CHEM 2022. [DOI: 10.1002/cjoc.202200064] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jiamin Wang
- CAS Key Laboratory of Tropical Marine Bio‐resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology Chinese Academy of Sciences Guangzhou 510301 China
- University of Chinese Academy of Sciences 19 Yuquan Road Beijing 100049 China
| | - Xiaoyan Pang
- CAS Key Laboratory of Tropical Marine Bio‐resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology Chinese Academy of Sciences Guangzhou 510301 China
| | - Chunmei Chen
- CAS Key Laboratory of Tropical Marine Bio‐resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology Chinese Academy of Sciences Guangzhou 510301 China
- University of Chinese Academy of Sciences 19 Yuquan Road Beijing 100049 China
| | - Chenghai Gao
- Institute of Marine Drugs Guangxi University of Chinese Medicine Nanning 530200 China
| | - Xuefeng Zhou
- CAS Key Laboratory of Tropical Marine Bio‐resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology Chinese Academy of Sciences Guangzhou 510301 China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458 China
- University of Chinese Academy of Sciences 19 Yuquan Road Beijing 100049 China
| | - Yonghong Liu
- CAS Key Laboratory of Tropical Marine Bio‐resources and Ecology/Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology Chinese Academy of Sciences Guangzhou 510301 China
- Institute of Marine Drugs Guangxi University of Chinese Medicine Nanning 530200 China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458 China
- University of Chinese Academy of Sciences 19 Yuquan Road Beijing 100049 China
| | - Xiaowei Luo
- Institute of Marine Drugs Guangxi University of Chinese Medicine Nanning 530200 China
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Sun J, Barrett H, Hall DR, Kutarna S, Wu X, Wang Y, Peng H. Ecological Role of 6OH-BDE47: Is It a Chemical Offense Molecule Mediated by Enoyl-ACP Reductases? ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:451-459. [PMID: 34914355 DOI: 10.1021/acs.est.1c05718] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Although hydroxylated polybrominated diphenyl ethers (OH-BDEs) are among the most abundant natural organobromine compounds, the fundamental biological rationale for marine organisms to produce OH-BDEs remains elusive. Herein, we demonstrated that natural OH-BDEs exerted strong antibacterial activities against Escherichia coli by inhibiting enoyl-[acyl-carrier-protein] reductase (FabI), while anthropogenic OH-BDEs were inactive. Distinct from E. coli, OH-BDE-producing marine γ-proteobacteria including Marinomonas mediterranea MMB-1 (MMB-1) and Pseudoalteromonas luteoviolacea 2ta16 (Pl2ta16) exhibited resistance to 6OH-BDE47. An alternative enoyl-[acyl-carrier-protein] (ACP) reductase, FabV, was detected in all three OH-BDE-producing marine γ-proteobacteria. Thermal stability and protein affinity purification studies revealed that 6OH-BDE47 did not bind to recombinant or endogenous FabV of MMB-1 or Pl2ta16, demonstrating that FabV was the primary mechanism for OH-BDE-producing marine γ-proteobacteria to be resistant to 6OH-BDE47. To further confirm if the laboratory results were evidenced in the field, the 16S rRNA sequencing and metagenomics data from seven field-collected marine sponges were analyzed. Notably, the two Clade 4 sponges containing high concentrations of 6OH-BDE47 exhibited a distinct microbiome community structure compared to the other analyzed clades. Correspondingly, FabV was found to be selectively enriched in the same Clade 4 sponges. The merged evidence from the laboratory experiments and field studies demonstrated that 6OH-BDE47 may act as a chemical offense molecule in marine sponges.
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Affiliation(s)
- Jianxian Sun
- Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - Holly Barrett
- Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - David Ross Hall
- Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - Steven Kutarna
- Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - Xiaoqin Wu
- Climate and Ecosystem Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 70A3317, United States
| | - Yan Wang
- Department of Ecology & Evolutionary Biology, University of Toronto, Toronto, ON M5S 3B2, Canada
- Department of Biological Sciences, University of Toronto Scarborough, Toronto, ON M1C 1A4, Canada
| | - Hui Peng
- Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
- School of the Environment, University of Toronto, Toronto, ON M5S 3H6, Canada
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Disinfection By-Products (DBPs) in Seawaters, Sediments and Biota near a Marine Terminal for Regasifying Liquefied Natural Gas (LNG) in the Northern Adriatic Sea (Italy). Processes (Basel) 2021. [DOI: 10.3390/pr9122175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
In 2009, the first Italian offshore LNG terminal, located approximately 12 km from the coast of Italy in the Northern Adriatic Sea, started its operation phase. Even if the active chlorine concentration in the discharged seawater is within limits set by Italian regulations (0.2 mg/L), to verify the environmental impact of disinfection by-products (DBPs) on the ecosystem, a specific monitoring program was scheduled from 2010 to 2015. The present study is the first displaying results of DBPs in marine waters of the Adriatic Sea. During the first two years of monitoring activities, DBPs were slightly above limit of quantifications (LOQs) in all investigated matrices and limited to the nearest area around the terminal. In these surveys, bromoform was the most frequently detected compound in seawaters, while haloacetic acid presence, as well as transplanted mussels and fish fauna, mostly characterized sediments. In the following surveys, levels were mostly negligible in all matrices investigated, with values mostly below the specific LOQs of the different compounds.
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Januário AP, Félix R, Félix C, Reboleira J, Valentão P, Lemos MFL. Red Seaweed-Derived Compounds as a Potential New Approach for Acne Vulgaris Care. Pharmaceutics 2021; 13:pharmaceutics13111930. [PMID: 34834345 PMCID: PMC8623078 DOI: 10.3390/pharmaceutics13111930] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 11/09/2021] [Accepted: 11/09/2021] [Indexed: 12/12/2022] Open
Abstract
Acne vulgaris (AV) is a chronic skin disease of the pilosebaceous unit affecting both adolescents and adults. Its pathophysiology includes processes of inflammation, increased keratinization, sebum production, hormonal dysregulation, and bacterial Cutibacterium acnes proliferation. Common AV has been treated with antibiotics since the 1960s, but strain resistance has emerged and is of paramount concern. Macroalgae are known producers of substances with bioactive properties, including anti-viral, antibacterial, antioxidant, and anti-inflammatory properties, among several others. In particular, red algae are rich in bioactive compounds such as polysaccharides, phenolic compounds, lipids, sterols, alkaloids, and terpenoids, conferring them antioxidant, antimicrobial, and anti-inflammatory activities, among others. Thus, the exploration of compounds from marine resources can be an appealing approach to discover new treatment options against AV. The aim of this work is to provide an overview of the current knowledge of the potentialities of red macroalgae in the treatment of AV by reviewing the main therapeutic targets of this disease, and then the existence of compounds or extracts with bioactive properties against them.
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Affiliation(s)
- Adriana P. Januário
- MARE—Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, 2520-641 Peniche, Portugal; (R.F.); (C.F.); (J.R.)
- REQUIMTE/LAQV, Laboratório de Farmacognosia, Faculdade de Farmácia, Universidade do Porto, 4050-313 Porto, Portugal;
- Correspondence: (A.P.J.); (M.F.L.L.)
| | - Rafael Félix
- MARE—Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, 2520-641 Peniche, Portugal; (R.F.); (C.F.); (J.R.)
- REQUIMTE/LAQV, Laboratório de Farmacognosia, Faculdade de Farmácia, Universidade do Porto, 4050-313 Porto, Portugal;
| | - Carina Félix
- MARE—Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, 2520-641 Peniche, Portugal; (R.F.); (C.F.); (J.R.)
| | - João Reboleira
- MARE—Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, 2520-641 Peniche, Portugal; (R.F.); (C.F.); (J.R.)
| | - Patrícia Valentão
- REQUIMTE/LAQV, Laboratório de Farmacognosia, Faculdade de Farmácia, Universidade do Porto, 4050-313 Porto, Portugal;
| | - Marco F. L. Lemos
- MARE—Marine and Environmental Sciences Centre, ESTM, Instituto Politécnico de Leiria, 2520-641 Peniche, Portugal; (R.F.); (C.F.); (J.R.)
- Correspondence: (A.P.J.); (M.F.L.L.)
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13
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Maeyama Y, Nakashima Y, Kato H, Hitora Y, Maki K, Inada N, Murakami S, Inazumi T, Ise Y, Sugimoto Y, Ishikawa H, Tsukamoto S. Amakusamine from a Psammocinia sp. Sponge: Isolation, Synthesis, and SAR Study on the Inhibition of RANKL-Induced Formation of Multinuclear Osteoclasts. JOURNAL OF NATURAL PRODUCTS 2021; 84:2738-2743. [PMID: 34612636 DOI: 10.1021/acs.jnatprod.1c00758] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
A simple methylenedioxy dibromoindole alkaloid, amakusamine (1), was isolated from a marine sponge of the genus Psammocinia, and its structure was determined from spectroscopic data, time-dependent density-functional theory calculations, and synthesis. Compound 1 inhibited the receptor activator of nuclear factor-κB ligand (RANKL)-induced formation of multinuclear osteoclasts with an IC50 value of 10.5 μM in RAW264 cells. The structure-activity relationship of 1 was also investigated with synthetic derivatives.
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Affiliation(s)
- Yuka Maeyama
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Yuta Nakashima
- Graduate School of Science and Technology, Kumamoto University, Kumamoto 860-8555, Japan
| | - Hikaru Kato
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Yuki Hitora
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Kazuhiko Maki
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Natsumi Inada
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Shunya Murakami
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Tomoaki Inazumi
- Department of Pharmaceutical Biochemistry, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Yuji Ise
- Sesoko Station, University of the Ryukyus, 3422 Sesoko, Motobu, Okinawa 905-0227, Japan
| | - Yukihiko Sugimoto
- Department of Pharmaceutical Biochemistry, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
| | - Hayato Ishikawa
- Graduate School of Pharmaceutical Sciences, Chiba University, Chiba 260-8675, Japan
| | - Sachiko Tsukamoto
- Department of Natural Medicines, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto 862-0973, Japan
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14
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Voser TM, Campbell MD, Carroll AR. How different are marine microbial natural products compared to their terrestrial counterparts? Nat Prod Rep 2021; 39:7-19. [PMID: 34651634 DOI: 10.1039/d1np00051a] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Covering: 1877 to 2020A key challenge in natural products research is the selection of biodiversity to yield novel chemistry. Recently, marine microorganisms have become a preferred source. But how novel are marine microorganism natural products compared to those reported from terrestrial microbes? Cluster analysis of chemical fingerprints and molecular scaffold analysis of 55 817 compounds reported from marine and terrestrial microorganisms, and marine macro-organisms showed that 76.7% of the compounds isolated from marine microorganisms are closely related to compounds isolated from terrestrial microorganisms. Only 14.3% of marine microorganism natural products are unique when marine macro-organism natural products are also considered. Studies targeting marine specific and understudied microbial phyla result in a higher likelihood of finding marine specific compounds, whereas the depth and geographic location of microorganism collection have little influence. We recommend marine targeted strain isolation, incorporating early use of genomic sequencing to guide strain selection, innovation in culture media and cultivation techniques and the application of cheminformatics tools to focus on unique natural product diversity, rather than the dereplication of known compounds.
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Affiliation(s)
- Tanja M Voser
- School of Environment and Science, Griffith University, Gold Coast, Australia. .,Griffith Institute for Drug Discovery, Griffith University, Brisbane, Australia.
| | - Max D Campbell
- School of Environment and Science, Griffith University, Gold Coast, Australia. .,Australian Rivers Institute-Coasts and Estuaries, Griffith University, Nathan, Australia.
| | - Anthony R Carroll
- School of Environment and Science, Griffith University, Gold Coast, Australia. .,Griffith Institute for Drug Discovery, Griffith University, Brisbane, Australia.
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15
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16
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Louie TS, Pavlik EJ, Häggblom MM. Genome analysis of Thauera chlorobenzoica strain 3CB-1 T, a halobenzoate-degrading bacterium isolated from aquatic sediment. Arch Microbiol 2021; 203:5095-5104. [PMID: 34302506 DOI: 10.1007/s00203-021-02497-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 07/11/2021] [Accepted: 07/15/2021] [Indexed: 11/24/2022]
Abstract
The genus Thauera is characterized by several species and strains with the ability to degrade a variety of aromatic compounds under denitrifying conditions. Thauera chlorobenzoica strain 3CB-1T, isolated from river sediment, has the unique ability to degrade a variety of halobenzoates, such as 3-chlorobenzoate, 3-bromobenzoate, 3-iodobenzoate, and 2-fluorobenzoate, coupled to nitrate reduction. The genome of T. chlorobenzoica strain 3CB-1T has been sequenced, allowing us to gain insights into the molecular basis for the anaerobic degradation of (halo)aromatic compounds. The 3.77-Mb genome contains 3584 genes; 3514 are protein-coding genes of which 198 are likely associated with degradation of aromatic compounds. It has a G + C content of 67.25%. The genome contains two sets of CoA reductase gene clusters, both belonging to class I benzoate-CoA reductases (BCRs). The genes in one of the two clusters differ from the typical BCRs, with low sequence identities, suggesting they might have different substrate specificities. The genome also contains four benzoate-CoA ligase genes. One likely encodes a 3-hydroxybenzoate-CoA ligase, and two others group together with benzoate-CoA ligases from Thauera aromatica. The fourth has a 77% identity to the mbdA gene from Azoarcus sp. CIB, is absent in the T. aromatica genome, and potentially encodes a halobenzoate-CoA ligase. 3-Chlorobenzoate is reductively dechlorinated in T. chlorobenzoica by a benzoyl-CoA reductase.
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Affiliation(s)
- Tiffany S Louie
- Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
| | - Elizabeth Jane Pavlik
- Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
| | - Max M Häggblom
- Department of Biochemistry and Microbiology, School of Environmental and Biological Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
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Denofrio MP, Villarruel FD, Erra-Balsells R, Ogilby PR, Wolcan E, Cabrerizo FM. Spectroscopic and quantum chemical characterization of the ground and lowest electronically excited singlet and triplet states of halo- and nitro-harmines in aqueous media. Phys Chem Chem Phys 2021; 23:11039-11051. [PMID: 33942840 DOI: 10.1039/d1cp00901j] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Halogenated and nitro β-carboline (βCs) alkaloids have garnered increasing interest for their role in a broad range of biological, pharmacological and biotechnological processes. Addressing their spectroscopic and photophysical properties provide tools to further explore the presence of these alkaloids in complex biological matrices. In addition, these studies help to elucidate processes where these alkaloids are involved. The UV-visible and steady-state room temperature fluorescence of bromo- and nitro-harmines in an aqueous environment at different pHs, low-temperature phosphorescence (at 77 K) and quantum yields of singlet oxygen production are reported herein. Singlet (S0 and S1) and triplet (T1) electronic states are further analyzed using density functional theory (DFT) and the results compared with experimental data. Data are discussed in the framework of potential biotechnological applications of these βC alkaloids.
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Affiliation(s)
- M Paula Denofrio
- Instituto Tecnológico de Chascomús (INTECH), Universidad Nacional de San Martín (UNSAM) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Intendente Marino Km 8.2, CC 164 (B7130IWA), Chascomús, Argentina.
| | - Fernando D Villarruel
- Instituto Tecnológico de Chascomús (INTECH), Universidad Nacional de San Martín (UNSAM) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Intendente Marino Km 8.2, CC 164 (B7130IWA), Chascomús, Argentina.
| | - Rosa Erra-Balsells
- Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Departamento de Química Orgánica, Pabellón II, 3er P., Ciudad Universitaria, (1428), Buenos Aires, Argentina and CONICET, Universidad de Buenos Aires, Centro de Investigación en Hidratos de Carbono (CIHIDECAR), Facultad de Ciencias Exactas y Naturales, Pabellón II, 3er P., Ciudad Universitaria, (1428), Buenos Aires, Argentina
| | - Peter R Ogilby
- Department of Chemistry, Aarhus University, DK-8000 Aarhus, Denmark
| | - Ezequiel Wolcan
- INIFTA - CONICET, Universidad Nacional de La Plata, La Plata, Argentina.
| | - Franco M Cabrerizo
- Instituto Tecnológico de Chascomús (INTECH), Universidad Nacional de San Martín (UNSAM) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Av. Intendente Marino Km 8.2, CC 164 (B7130IWA), Chascomús, Argentina.
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18
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Piñeiro-Juncal N, Díaz-Almela E, Leiva-Dueñas C, Deulofeu O, Frigola J, Soler M, Martinez-Cortizas A, Giralt S, Garcia-Orellana J, Mateo MÁ. Processes driving seagrass soils composition along the western Mediterranean: The case of the southeast Iberian Peninsula. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 768:144352. [PMID: 33454472 DOI: 10.1016/j.scitotenv.2020.144352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 11/05/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
Seagrasses are distributed all along the coast of the Mediterranean Sea being Posidonia oceanica and Cymodocea nodosa the most common species. They promote sedimentation, leading to the formation of well-structured soils. Over the last decade, a growing attention has been paid to their role as CO2 sinks in the form of organic carbon (Corg) and to their use as environmental archives. However, most of the knowledge about pedogenetic processes in these soils refer to the rhizosphere. This study aims to understand seagrass soils biogeochemistry in the rhizosphere and below, which in turn can help to understand their long term formation processes. Fifteen cores were strategically sampled along a 350 km stretch of the Southeast Iberian coast, and analyzed for elemental composition (XRF core-scanning), magnetic susceptibility, Corg content and gran size distribution. The cores were dated by 210Pb and 14C-AMS techniques to estimate soil accretion. Principal component analysis was used to explore the main geochemical processes linked to soil formation. The results showed that terrestrial runoff plays a key role in meadow soil composition. Furthermore, Corg accumulation did not follow any general depth trend in our soil records, suggesting that temporal variation in Corg inputs is an important factor in determining carbon depth distribution within the soil. We obtained evidence that the establishment of well-developed, stable C. nodosa meadows in the Mediterranean Sea may be promoted by adverse environmental conditions to P. oceanica settlement. Metal's behavior within the meadow deposit and their interaction with organic matter and carbonates is unclear. The results presented in this paper highlight the importance of the influence of land-based inputs in the characteristics of seagrass meadow deposits, highly determining their Corg content, as well as the need for further studies on metal behavior, to understand their full potential as environmental records.
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Affiliation(s)
- Nerea Piñeiro-Juncal
- EcoPast (GI-1553), Facultade de Bioloxía, Universidade de Santiago de Compostela, Campus Sur s/n, Santiago de Compostela 15782, Spain; Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain.
| | - Elena Díaz-Almela
- Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain
| | - Carmen Leiva-Dueñas
- Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain
| | - Ona Deulofeu
- Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain
| | - Jaime Frigola
- GRC Geociències Marines, Departament de Dinàmica de la Terra i de l'Oceà, Facultat de Ciències de la Terra, Universitat de Barcelona, Carrer Martí i Franquès s/n, 08028 Barcelona, Spain
| | - Montserrat Soler
- Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain
| | - Antonio Martinez-Cortizas
- EcoPast (GI-1553), Facultade de Bioloxía, Universidade de Santiago de Compostela, Campus Sur s/n, Santiago de Compostela 15782, Spain
| | - Santiago Giralt
- Geosciences Barcelona (Geo3BCN-CSIC), Lluís Solé i Sabarís s/n, 08028 Barcelona, Spain
| | - Jordi Garcia-Orellana
- Institut de Ciència i Tecnologia Ambientals, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain; Departament de Física, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Barcelona, Spain
| | - Miguel Ángel Mateo
- Group of Aquatic Macrophytes Ecology, Centre d'Estudis Avançats de Blanes (CEAB-CSIC), 17300 Blanes, Girona, Spain; Centre for Marine Ecosystems Research, Edith Cowan University, Joondalup, WA, Australia
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19
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Breinlinger S, Phillips TJ, Haram BN, Mareš J, Martínez Yerena JA, Hrouzek P, Sobotka R, Henderson WM, Schmieder P, Williams SM, Lauderdale JD, Wilde HD, Gerrin W, Kust A, Washington JW, Wagner C, Geier B, Liebeke M, Enke H, Niedermeyer THJ, Wilde SB. Hunting the eagle killer: A cyanobacterial neurotoxin causes vacuolar myelinopathy. Science 2021; 371:371/6536/eaax9050. [PMID: 33766860 DOI: 10.1126/science.aax9050] [Citation(s) in RCA: 57] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 10/30/2020] [Accepted: 01/26/2021] [Indexed: 12/30/2022]
Abstract
Vacuolar myelinopathy is a fatal neurological disease that was initially discovered during a mysterious mass mortality of bald eagles in Arkansas in the United States. The cause of this wildlife disease has eluded scientists for decades while its occurrence has continued to spread throughout freshwater reservoirs in the southeastern United States. Recent studies have demonstrated that vacuolar myelinopathy is induced by consumption of the epiphytic cyanobacterial species Aetokthonos hydrillicola growing on aquatic vegetation, primarily the invasive Hydrilla verticillata Here, we describe the identification, biosynthetic gene cluster, and biological activity of aetokthonotoxin, a pentabrominated biindole alkaloid that is produced by the cyanobacterium A. hydrillicola We identify this cyanobacterial neurotoxin as the causal agent of vacuolar myelinopathy and discuss environmental factors-especially bromide availability-that promote toxin production.
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Affiliation(s)
- Steffen Breinlinger
- Institute of Pharmacy, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany
| | - Tabitha J Phillips
- Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA, USA
| | - Brigette N Haram
- Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA, USA
| | - Jan Mareš
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic.,Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czech Republic.,Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - José A Martínez Yerena
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic.,Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Pavel Hrouzek
- Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czech Republic.,Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - Roman Sobotka
- Centre Algatech, Institute of Microbiology of the Czech Academy of Sciences, Třeboň, Czech Republic.,Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - W Matthew Henderson
- Office of Research and Development, Center for Environmental Measurement and Modeling, U.S. Environmental Protection Agency, Athens, GA, USA
| | - Peter Schmieder
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany
| | - Susan M Williams
- Department of Population Health, Poultry Diagnostic and Research Center, College of Veterinary Medicine, University of Georgia, Athens, GA, USA
| | | | - H Dayton Wilde
- Horticulture Department, University of Georgia, Athens, GA, USA
| | - Wesley Gerrin
- Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA, USA
| | - Andreja Kust
- Biology Centre of the Czech Academy of Sciences, Institute of Hydrobiology, České Budějovice, Czech Republic
| | - John W Washington
- Office of Research and Development, Center for Environmental Measurement and Modeling, U.S. Environmental Protection Agency, Athens, GA, USA
| | - Christoph Wagner
- Institute of Chemistry, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany
| | - Benedikt Geier
- Max Planck Institute for Marine Microbiology (MPIMM), Bremen, Germany
| | - Manuel Liebeke
- Max Planck Institute for Marine Microbiology (MPIMM), Bremen, Germany
| | | | - Timo H J Niedermeyer
- Institute of Pharmacy, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany.
| | - Susan B Wilde
- Warnell School of Forestry and Natural Resources, University of Georgia, Athens, GA, USA.
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Wahhab BHA, Samsulrizal NH, Edbeib MF, Wahab RA, Al-Nimer MSM, Hamid AAA, Oyewusi HA, Kaya Y, Notarte KIR, Shariff AHM, Huyop F. Genomic analysis of a functional haloacid-degrading gene of Bacillus megaterium strain BHS1 isolated from Blue Lake (Mavi Gölü, Turkey). ANN MICROBIOL 2021. [DOI: 10.1186/s13213-021-01625-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Purpose
Bacillus megaterium strain BHS1, isolated from an alkaline water sample taken from Mavi Gölü (Blue Lake, Turkey), can grow on minimal medium containing 2,2-dichloropropionic acid. We characterized this bacterium at the genomic level.
Methods
The HiSeq platform was used to carry out genome sequencing, de novo assembly, and scaffolding with strain BHS1. Next, genome data were analyzed to demarcate DNA regions containing protein-coding genes and determine the function of certain BHS1 genes. Finally, results from a colorimetric chloride ion–release assay demonstrated that strain BHS1 produces dehalogenase.
Results
De novo assembly of the BHS1 genomic sequence revealed a genome size of ~ 5.37 Mb with an average G+C content of 38%. The predicted nuclear genome harbors 5509 protein-coding genes, 1353 tRNA genes, 67 rRNA genes, and 6 non-coding (mRNA) genes. Genomic mapping of strain BHS1 revealed its amenability to synthesize two families of dehalogenases (Cof-type haloacid dehalogenase IIB family hydrolase and haloacid dehalogenase type II), suggesting that these enzymes can participate in the catabolism of halogenated organic acids. The mapping identified seven Na+/H+ antiporter subunits that are vital for adaptation of the bacterium to an alkaline environment. Apart from a pairwise analysis to the well-established L-2-haloacid dehalogenases, whole-cell analysis strongly suggested that the haloacid dehalogenase type II might act stereospecifically on L-2-chloropropionic acid, D,L-2-chloropropionic acid, and 2,2-dichloropropionic acid. Whole-cell studies confirmed the utilization of these three substrates and the gene’s role in dehalogenation.
Conclusions
To our knowledge, this is the first report of the full genome sequence for strain BHS1, which enabled the characterization of selected genes having specific metabolic activities and their roles in the biodegradation of halogenated compounds.
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21
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Mukai K, Fujimori T, Anh HQ, Fukutani S, Kunisue T, Nomiyama K, Takahashi S. Extractable organochlorine (EOCl) and extractable organobromine (EOBr) in GPC-fractionated extracts from high-trophic-level mammals: Species-specific profiles and contributions of legacy organohalogen contaminants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 756:143843. [PMID: 33303197 DOI: 10.1016/j.scitotenv.2020.143843] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 11/05/2020] [Accepted: 11/06/2020] [Indexed: 06/12/2023]
Abstract
Previous studies have suggested that unidentified compounds constitute a large proportion of extractable organochlorine (EOCl) and extractable organobromine (EOBr) in the crude extracts without fractionation; however, the proportion of unidentified EOX (X = chlorine, bromine) associated with high-/low-molecular-weight compounds is still unknown. In this study, we applied gel permeation chromatography to fractionate extracts from archived liver samples of high-trophic marine and terrestrial mammals (striped dolphins, cats, and raccoon dogs), for which concentrations of legacy organohalogen contaminants (polychlorinated biphenyls, organochlorine pesticides, and polybrominated diphenyl ethers [PBDEs]) had been previously reported. EOX in high- (>1000 g/mol) and low- (≤1000 g/mol) molecular-weight fractions (EOX-H and EOX-L) were determined by neutron activation analysis. Comparison of EOCl and EOBr enabled the characterization among species. Despite small differences in the concentrations and molecular-weight profiles of EOCl among species, the contribution of chlorine in identified compounds to EOCl-L varied from 1.5% (cats) to 79% (striped dolphins). Considerable species-specific variations were observed in the concentrations of EOBr: striped dolphins exhibited significantly greater concentrations of both EOBr-H and EOBr-L than cats and/or raccoon dogs. Moreover, the contribution of bromine in PBDEs to EOBr-L was >50% in two cats, while it was <6% in other specimens. This is the first report on EOBr mass balance in cetaceans and on EOX mass balance in terrestrial mammals living close to humans. These results suggest the need for analysis of unidentified chlorinated compounds in terrestrial mammals and unidentified brominated compounds in marine mammals.
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Affiliation(s)
- Kota Mukai
- Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nisikyo-ku, Kyoto 615-8540, Japan
| | - Takashi Fujimori
- Department of Environmental Engineering, Graduate School of Engineering, Kyoto University, Katsura, Nisikyo-ku, Kyoto 615-8540, Japan.
| | - Hoang Quoc Anh
- Center of Advanced Technology for the Environment (CATE), Graduate School of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama 790-8566, Japan
| | - Satoshi Fukutani
- Institute for Integrated Radiation and Nuclear Science, Kyoto University, Kumatori 590-0494, Japan
| | - Tatsuya Kunisue
- Center for Marine Environmental Studies (CMES), Ehime University, 2-5 Bunkyo-cho, Matsuyama 790-8577, Japan
| | - Kei Nomiyama
- Center for Marine Environmental Studies (CMES), Ehime University, 2-5 Bunkyo-cho, Matsuyama 790-8577, Japan
| | - Shin Takahashi
- Center of Advanced Technology for the Environment (CATE), Graduate School of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama 790-8566, Japan; Center for Marine Environmental Studies (CMES), Ehime University, 2-5 Bunkyo-cho, Matsuyama 790-8577, Japan
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22
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Stefenoni HA, Räisänen SE, Cueva SF, Wasson DE, Lage CFA, Melgar A, Fetter ME, Smith P, Hennessy M, Vecchiarelli B, Bender J, Pitta D, Cantrell CL, Yarish C, Hristov AN. Effects of the macroalga Asparagopsis taxiformis and oregano leaves on methane emission, rumen fermentation, and lactational performance of dairy cows. J Dairy Sci 2021; 104:4157-4173. [PMID: 33516546 DOI: 10.3168/jds.2020-19686] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 11/21/2020] [Indexed: 12/19/2022]
Abstract
Asparagopsis taxiformis (AT) is a source of multiple halogenated compounds and, in a limited number of studies, has been shown to decrease enteric CH4 emission in vitro and in vivo. Similarly, oregano has been suggested as a potential CH4 mitigating agent. This study consisted of 2 in vitro and 2 in vivo experiments. Experiment (Exp.) 1 was aimed at establishing the effect of AT on CH4 emission in vitro. Two experiments (Exp. 2 and 3) with lactating dairy cows were conducted to determine the antimethanogenic effect of AT and oregano (Exp. 3) in vivo. Another experiment (Exp. 4) was designed to investigate stability of bromoform (CHBr3) in AT over time. In Exp. 3, 20 Holstein cows were used in a replicated 4 × 4 Latin square design with four 28-d periods. Treatments were basal diet (control) or basal diet supplemented with (dry matter basis) 0.25% AT (LowAT), 0.50% AT (HighAT), or 1.77% oregano (Origanum vulgare L.) leaves. Enteric gas emissions were measured using the GreenFeed system (C-Lock Inc., Rapid City, SD), and rumen samples were collected for fermentation analysis using the ororuminal technique. In Exp.1 (in vitro), relative to the control, AT (at 1% dry matter basis, inclusion rate) decreased CH4 yield by 98%. In Exp. 3, HighAT decreased average daily CH4 emission and CH4 yield by 65% and 55%, respectively, in experimental periods 1 and 2, but had no effect in periods 3 and 4. The differential response to AT among experimental periods was likely a result of a decrease in CHBr3 concentration in AT over time, as observed in Exp. 4 (up to 84% decrease in 4 mo of storage). In Exp. 3, H2 emission was increased by AT and, as expected, the proportion of acetate in the total volatile fatty acids in the rumen was decreased and those of propionate and butyrate were increased by HighAT compared with the control. Compared with the control, HighAT decreased dry matter intake, milk yield, and energy-corrected milk yield in Exp. 3. Milk composition was not affected by treatment, except lactose percentage and yield were decreased by HighAT. Concentrations of iodine and bromide in milk were increased by HighAT compared with the control. Milk CHBr3 concentration and its organoleptic characteristics were not different between control and HighAT. Oregano had no effect on CH4 emission or lactational performance of the cows in Exp. 3. Overall, AT included at 0.50% in the ration of dairy cows can have a large mitigation effect on enteric CH4 emission, but dry matter intake and milk production may also decrease. There was a marked decrease in the CH4 mitigation potential of AT in the second half of Exp. 3, likely resulting from CHBr3 decay over time.
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Affiliation(s)
- H A Stefenoni
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - S E Räisänen
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - S F Cueva
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - D E Wasson
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - C F A Lage
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - A Melgar
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - M E Fetter
- Department of Animal Science, The Pennsylvania State University, University Park 16802
| | - P Smith
- Proteomics and Mass Spectrometry Core Facility, The Pennsylvania State University, University Park 16802
| | - M Hennessy
- Department of Clinical Studies-New Bolton Center, School of Veterinary Medicine, University of Pennsylvania, Kennett Square 19348
| | - B Vecchiarelli
- Department of Clinical Studies-New Bolton Center, School of Veterinary Medicine, University of Pennsylvania, Kennett Square 19348
| | - J Bender
- Department of Clinical Studies-New Bolton Center, School of Veterinary Medicine, University of Pennsylvania, Kennett Square 19348
| | - D Pitta
- Department of Clinical Studies-New Bolton Center, School of Veterinary Medicine, University of Pennsylvania, Kennett Square 19348
| | - C L Cantrell
- Natural Products Utilization Research Unit, U.S. Department of Agriculture, Agricultural Research Service, University, MS 38677
| | - C Yarish
- Department of Ecology and Evolutionary Biology, The University of Connecticut, Stamford 06901
| | - A N Hristov
- Department of Animal Science, The Pennsylvania State University, University Park 16802.
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23
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Aguilar-Alarcón P, Gonzalez SV, Simonsen MA, Borrero-Santiago AR, Sanchís J, Meriac A, Kolarevic J, Asimakopoulos AG, Mikkelsen Ø. Characterizing changes of dissolved organic matter composition with the use of distinct feeds in recirculating aquaculture systems via high-resolution mass spectrometry. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:142326. [PMID: 33370913 DOI: 10.1016/j.scitotenv.2020.142326] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 09/07/2020] [Accepted: 09/08/2020] [Indexed: 06/12/2023]
Abstract
Recirculating aquaculture systems (RAS) are a new alternative to traditional aquaculture approaches, allowing full control over the fish production conditions, while reducing the water demand. The reduction of water exchange leads to an accumulation of dissolved organic matter (DOM) that can have potential effects on water quality, fish welfare and system performance. Despite the growing awareness of DOM in aquaculture, scarce scientific information exists for understanding the composition and transformation of DOM in RAS. In this study, a non-targeted approach using ultra-performance liquid chromatography coupled to a hybrid quadrupole-time of flight mass spectrometer (UPLC-QTOF-MS) was used to characterize compositional changes of low molecular weight (LMW) DOM in RAS, when operated under two different feed types. A total of 1823 chemicals were identified and the majority of those contained a CHON chemical group in their structure. Changes in the composition of LMW-DOM in RAS waters were observed when the standard feed was switched to RAS feed. The DOM with the use of standard feed, consisted mainly of lignin/CRAM-like, CHO and CHOS chemical groups, while the DOM that used RAS feed, was mainly composed by unsaturated hydrocarbon, CHNO and CHNOS chemical groups. The Bray-Curtis dissimilarity cluster demonstrated differences in the composition of DOM from RAS and was associated to the type of feed used. When the RAS feed was used, the Kendrick mass defect plots of -CH2- homologous units in the pump-sump (after the water treatment) showed a high removal capacity for CHNO, CHNOS and halogenated chemicals with high Kendrick mass defect, KMD > 0.7. To our knowledge, this is the first report of LMW-DOM characterization of RAS by high-resolution mass spectrometry (HRMS).
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Affiliation(s)
- Patricia Aguilar-Alarcón
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway.
| | - Susana V Gonzalez
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway
| | - Mads A Simonsen
- Department of Mathematical Sciences, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway
| | - Ana R Borrero-Santiago
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway
| | - Josep Sanchís
- Catalan Institute for Water Research (ICRA), Scientific and Technological Park of the University of Girona, H(2)O Building, C/Emili Grahit, 101, E17003 Girona, Spain; University of Girona, 17071 Girona, Spain
| | | | | | - Alexandros G Asimakopoulos
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway.
| | - Øyvind Mikkelsen
- Department of Chemistry, Norwegian University of Science and Technology, Høgskoleringen 1, 7491 Trondheim, Norway
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24
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Evaluation of Environmental Quality of Mediterranean Coastal Lagoons Using Persistent Organic Pollutants and Metals in Thick-Lipped Grey Mullet. WATER 2020. [DOI: 10.3390/w12123450] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The evaluation of past and present anthropogenic impacts affecting the ecological quality status of transitional ecosystems is crucial from the perspective of protecting them from further deterioration, and to evaluate remediation and restoration measures. Contamination patterns of thick-lipped grey mullet from two Mediterranean coastal lagoons within a protected area in Italy were assessed and compared in order to evaluate their overall quality status and to collect information that can provide useful feedback on management choices aimed at enhancing environmental quality and biodiversity conservation. The quality status of the two lagoons was evaluated by an environmental assessment methodology based on indicators of direct and indirect human pressures, while a broad range of analyses were carried out to determine the presence and concentration of persistent organic pollutants (POPs) and metals in fish muscle tissue. A good quality status resulted for both lagoons, and an overall limited anthropogenic impact in the surrounding area. This could account for POPs and metal contamination levels found in mullet, although limited, and relating to their patterns. The overlap of results achieved with the two evaluation approaches can provide support for management choices in Mediterranean lagoon environments, especially for those committed to the protection and conservation of biodiversity.
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25
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Satam N, Nemu S, Gururaja GN, Namboothiri INN. Substrate-oriented selectivity in the Mg-mediated conjugate addition of bromoform to electron-deficient alkenes. Org Biomol Chem 2020; 18:5697-5707. [PMID: 32663237 DOI: 10.1039/d0ob00599a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The Mg-mediated conjugate addition of bromoform to a variety of electron-deficient alkenes has been investigated. In the case of nitrodienes and dibenzylideneacetones, tribromomethylated products were isolated, whereas spiro-cyclopropanated products were obtained with cyclic dibenzylideneketones and 3-olefinic oxindoles. The spiro-cyclopropyl ketones derived from cyclic dibenzylideneketones were successfully transformed into fused furans via the Cloke-Wilson rearrangement.
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Affiliation(s)
- Nishikant Satam
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
| | - Saumyadip Nemu
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
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26
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Gelman F, Dybala-Defratyka A. Bromine isotope effects: Predictions and measurements. CHEMOSPHERE 2020; 246:125746. [PMID: 31918087 DOI: 10.1016/j.chemosphere.2019.125746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 12/18/2019] [Accepted: 12/23/2019] [Indexed: 06/10/2023]
Abstract
Brominated organic compounds (BOCs), abundant in Nature, originate from its own sources or anthropogenic activity. Many of these compounds are harmful and constitute a serious threat, therefore it is important to study and understand their behavior and fate. In situ, BOCs undergo various chemical and biochemical reactions through distinctive mechanistic pathways. However, breaking C-Br specific bond is a crucial step in the transformation of brominated organic compounds. Understanding the mechanisms of debromination can be substantially enhanced by studying Br isotope effects. In this Mini-review we provide overlook of existing experimental techniques for Br isotope analysis, discuss Br kinetic isotope effects measured for selected chemical and biochemical reactions in the light of underlying reaction mechanisms, and review the outcome from computational study of performed to provide more insightful interpretation of observed findings.
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Affiliation(s)
| | - Agnieszka Dybala-Defratyka
- Institute of Applied Radiation Chemistry, Faculty of Chemistry, Lodz University of Technology, Lodz, Poland.
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Abstract
Scientists studying seagrasses typically refer to their substratum as sediment, but recently researchers have begun to refer to it as a soil. However, the logistics of sampling underwater substrata and the fragility of these ecosystems challenge their study using pedological methods. Previous studies have reported geochemical processes within the rhizosphere that are compatible with pedogenesis. Seagrass substratum accumulated over the Recent Holocene and can reach several meters in thickness, but studies about deeper layers are scarce. This study is a first attempt to find sound evidence of vertical structuring in Posidonia oceanica deposits to serve as a basis for more detailed pedological studies. A principal component analysis on X-Ray Fluorescence-elemental composition, carbonate content and organic matter content data along a 475 cm core was able to identify four main physico-chemical signals: humification, accumulation of carbonates, texture and organic matter depletion. The results revealed a highly structured deposit undergoing pedogenetical processes characteristic of soils rather than a mere accumulation of sediments. Further research is required to properly describe the substratum underneath seagrass meadows, decide between the sediment or soil nature for seagrass substrata, and for the eventual inclusion of seagrass substrata in soil classifications and the mapping of seagrass soil resources.
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28
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Bruder M, Polo G, Trivella DBB. Natural allosteric modulators and their biological targets: molecular signatures and mechanisms. Nat Prod Rep 2020; 37:488-514. [PMID: 32048675 DOI: 10.1039/c9np00064j] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Covering: 2008 to 2018Over the last decade more than two hundred single natural products were confirmed as natural allosteric modulators (alloNPs) of proteins. The compounds are presented and discussed with the support of a chemical space, constructed using a principal component analysis (PCA) of molecular descriptors from chemical compounds of distinct databases. This analysis showed that alloNPs are dispersed throughout the majority of the chemical space defined by natural products in general. Moreover, a cluster of alloNPs was shown to occupy a region almost devoid of allosteric modulators retrieved from a dataset composed mainly of synthetic compounds, further highlighting the importance to explore the entire natural chemical space for probing allosteric mechanisms. The protein targets which alloNPs bind to comprised 81 different proteins, which were classified into 5 major groups, with enzymes, in particular hydrolases, being the main representative group. The review also brings a critical interpretation on the mechanisms by which alloNPs display their molecular action on proteins. In the latter analysis, alloNPs were classified according to their final effect on the target protein, resulting in 3 major categories: (i) local alteration of the orthosteric site; (ii) global alteration in protein dynamics that change function; and (iii) oligomer stabilisation or protein complex destabilisation via protein-protein interaction in sites distant from the orthosteric site. G-protein coupled receptors (GPCRs), which use a combination of the three types of allosteric regulation found, were also probed by natural products. In summary, the natural allosteric modulators reviewed herein emphasise their importance for exploring alternative chemotherapeutic strategies, potentially pushing the boundaries of the druggable space of pharmacologically relevant drug targets.
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Affiliation(s)
- Marjorie Bruder
- Brazilian Biosciences National Laboratory (LNBio), National Centre for Research in Energy and Materials (CNPEM), 13083-970 Campinas, SP, Brazil.
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29
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Stanton C, Leahy S, Kelly B, Ross RP, Attwood G. Manipulating the rumen microbiome to address challenges facing Australasian dairy farming. ANIMAL PRODUCTION SCIENCE 2020. [DOI: 10.1071/an18611] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
As dairy production systems expand globally, there is an increasing need to reduce the impact of dairy wastes on the environment by decreasing urinary N output and reducing emissions of green-house gasses (GHG). An understanding of rumen microbiome composition can result in the development of strategies that reduce methane emissions and nitrogen leakage, ultimately lowering the impact of dairying on the environment, while improving animal productivity. The strongest driver of the composition of the rumen microbiome was found to be the diet of the host animal. Thus, dietary manipulation offers a viable solution to alter the microbiome to address present-day challenges faced by the dairy industry. In the present review, we discuss such strategies and provide insight into rumen microbiome changes that have resulted in reduced GHG emissions and improved animal productivity.
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30
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Wu Q, Bouwman H, Uren RC, van der Lingen CD, Vetter W. Halogenated natural products and anthropogenic persistent organic pollutants in chokka squid (Loligo reynaudii) from three sites along the South Atlantic and Indian Ocean coasts of South Africa. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 255:113282. [PMID: 31563788 DOI: 10.1016/j.envpol.2019.113282] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 09/13/2019] [Accepted: 09/18/2019] [Indexed: 05/24/2023]
Abstract
Chokka squid (Loligo reynaudii) from three sites along the South African coast were analyzed for halogenated natural products (HNPs) and anthropogenic persistent organic pollutants (POPs). HNPs were generally more than one order of magnitude more abundant than POPs. The most prevalent pollutant, i.e. the HNP 2,3,3',4,4',5,5'-heptachloro-1'-methyl-1,2'-bipyrrole (Q1), was detected in all chokka squid samples with mean concentrations of 105, 98 and 45 ng/g lipid mass, respectively, at the Indian Ocean (site A), between both oceans (site B) and the South Atlantic Ocean (site C). In addition, bromine containing polyhalogenated 1'-methyl-1,2'-bipyrroles (PMBPs), 2,4,6-tribromophenol (2,4,6-TBP, up to 28 ng/g lipid mass), polybrominated methoxy diphenyl ethers, MHC-1, TBMP and other HNPs were also detected. Polychlorinated biphenyls (PCBs) were the predominant class of anthropogenic POPs. PCB 153 was the most abundant PCB congener in chokka squid from the Indian Ocean, and PCB 138 in samples from the South Atlantic Ocean and between both oceans.
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Affiliation(s)
- Qiong Wu
- University of Hohenheim, Institute of Food Chemistry, Garbenstraße 28, 70599 Stuttgart, Germany
| | - Hindrik Bouwman
- Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Ryan C Uren
- Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Carl D van der Lingen
- Fisheries Management, Department of Agriculture, Forestry and Fisheries, Cape Town, South Africa; Marine Research Institute and Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Walter Vetter
- University of Hohenheim, Institute of Food Chemistry, Garbenstraße 28, 70599 Stuttgart, Germany.
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31
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Fluorophenols bearing nitrogenated heterocycle moieties, a class of novel Keap1-Nrf2 protein-protein interaction inhibitors: synthesis, antioxidant stress screening and molecular docking. Med Chem Res 2019. [DOI: 10.1007/s00044-019-02376-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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32
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Buijs Y, Bech PK, Vazquez-Albacete D, Bentzon-Tilia M, Sonnenschein EC, Gram L, Zhang SD. Marine Proteobacteria as a source of natural products: advances in molecular tools and strategies. Nat Prod Rep 2019; 36:1333-1350. [DOI: 10.1039/c9np00020h] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
This review covers the recent advances in molecular tools and strategies for studies and use of natural products from marine Proteobacteria.
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Affiliation(s)
- Yannick Buijs
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Pernille Kjersgaard Bech
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Dario Vazquez-Albacete
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Mikkel Bentzon-Tilia
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Eva C. Sonnenschein
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Lone Gram
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
| | - Sheng-Da Zhang
- Department of Biotechnology and Biomedicine
- Technical University of Denmark
- DK-2800 Kgs Lyngby
- Denmark
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33
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Genome-Guided Identification of Organohalide-Respiring Deltaproteobacteria from the Marine Environment. mBio 2018; 9:mBio.02471-18. [PMID: 30563901 PMCID: PMC6299228 DOI: 10.1128/mbio.02471-18] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
The marine environment is a major reservoir for both anthropogenic and natural organohalides, and reductive dehalogenation is thought to be an important process in the overall cycling of these compounds. Here we demonstrate that the capacity of organohalide respiration appears to be widely distributed in members of marine Deltaproteobacteria. The identification of reductive dehalogenase genes in diverse Deltaproteobacteria and the confirmation of their dehalogenating activity through functional assays and transcript analysis in select isolates extend our knowledge of organohalide-respiring Deltaproteobacteria diversity. The presence of functional reductive dehalogenase genes in diverse Deltaproteobacteria implies that they may play an important role in organohalide respiration in the environment. Organohalide compounds are widespread in the environment as a result of both anthropogenic activities and natural production. The marine environment, in particular, is a major reservoir of organohalides, and reductive dehalogenation is thought to be an important process in the overall cycling of these compounds. Deltaproteobacteria are important members of the marine microbiota with diverse metabolic capacities, and reductive dehalogenation has been observed in some Deltaproteobacteria. In this study, a comprehensive survey of Deltaproteobacteria genomes revealed that approximately 10% contain reductive dehalogenase (RDase) genes, which are found within a common gene neighborhood. The dehalogenating potential of select RDase A-containing Deltaproteobacteria and their gene expression were experimentally verified. Three Deltaproteobacteria strains isolated from marine environments representing diverse species, Halodesulfovibrio marinisediminis, Desulfuromusa kysingii, and Desulfovibrio bizertensis, were shown to reductively dehalogenate bromophenols and utilize them as terminal electron acceptors in organohalide respiration. Their debrominating activity was not inhibited by sulfate or elemental sulfur, and these species are either sulfate- or sulfur-reducing bacteria. The analysis of RDase A gene transcripts indicated significant upregulation induced by 2,6-dibromophenol. This study extends our knowledge of the phylogenetic diversity of organohalide-respiring bacteria and their functional RDase A gene diversity. The identification of reductive dehalogenase genes in diverse Deltaproteobacteria and confirmation of their organohalide-respiring capability suggest that Deltaproteobacteria play an important role in natural organohalide cycling.
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34
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Zhou Y, Liu J. Emissions, environmental levels, sources, formation pathways, and analysis of polybrominated dibenzo-p-dioxins and dibenzofurans: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:33082-33102. [PMID: 30269281 DOI: 10.1007/s11356-018-3307-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 09/20/2018] [Indexed: 06/08/2023]
Abstract
Polybrominated dibenzo-p-dioxins and dibenzofurans (PBDD/Fs) were labeled potential persistent organic pollutants by the Stockholm Convention and have structures and toxicities similar to those of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs), which has caused considerable concern. This article reviews the current available literature on the status, sources, formation pathways, and analysis of PBDD/Fs. PBDD/Fs are widely generated in industrial thermal processes, such as those for brominated flame retardant (BFR) products, e-waste dismantling, metal smelting processes, and waste incineration. PBDD/Fs can form via the following routes: precursor formation, de novo formation, biosynthesis, and natural formation. The levels of PBDD/Fs in the environment and in organisms and humans have increased due to extensive consumption and the increasing inventory of BFRs; thus, the risk of human exposure to PBDD/Fs is expected to be high.
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Affiliation(s)
- Yanxiao Zhou
- Zhejiang University of Technology, No.18 Chaowang Road, Hangzhou, 310014, Zhejiang, China
| | - Jinsong Liu
- Zhejiang University of Technology, No.18 Chaowang Road, Hangzhou, 310014, Zhejiang, China.
- Zhejiang Environmental Monitoring Center, Hangzhou, 310012, Zhejiang, China.
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35
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Taslimi P, Aslan HE, Demir Y, Oztaskin N, Maraş A, Gulçin İ, Beydemir S, Goksu S. Diarylmethanon, bromophenol and diarylmethane compounds: Discovery of potent aldose reductase, α-amylase and α-glycosidase inhibitors as new therapeutic approach in diabetes and functional hyperglycemia. Int J Biol Macromol 2018; 119:857-863. [DOI: 10.1016/j.ijbiomac.2018.08.004] [Citation(s) in RCA: 144] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2018] [Revised: 07/31/2018] [Accepted: 08/01/2018] [Indexed: 11/28/2022]
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36
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Golan R, Gelman F, Kuder T, Taylor AA, Ronen Z, Bernstein A. Degradation of 4-bromophenol by Ochrobactrum sp. HI1 isolated from desert soil: pathway and isotope effects. Biodegradation 2018; 30:37-46. [DOI: 10.1007/s10532-018-9860-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Accepted: 10/16/2018] [Indexed: 12/01/2022]
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37
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Vénisseau A, Bichon E, Brosseaud A, Vaccher V, Lesquin E, Larvor F, Durand S, Dervilly-Pinel G, Marchand P, Le Bizec B. Occurence of legacy and novel brominated flame retardants in food and feed in France for the period 2014 to 2016. CHEMOSPHERE 2018; 207:497-506. [PMID: 29843025 DOI: 10.1016/j.chemosphere.2018.05.122] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Revised: 05/18/2018] [Accepted: 05/21/2018] [Indexed: 06/08/2023]
Abstract
Determination of the occurrence levels of legacy and novel BFRs is today required to better understand the trends of BFRs contamination in food consecutive to the EU PBDEs restrictions and to proceed to a recent human food exposure in parallel. Therefore, concentrations of a large set of brominated flame retardants (BFRs) (n = 27) including PBDEs, HBCDDs, TBBPA and novel flame retardants (nBFRs) have been determined in more than 600 food and feed samples collected between 2014 and 2016 in the context of French monitoring plans. Although legacy BFRs had already been studied in France, such a survey constituted the very first determination of nBFRs occurrence in foodstuffs at the national level. The concentration levels measured in fish and fish products were in general higher than in the other food categories. PBDEs were detected in 70% of the samples and were observed as the most abundant congeners (representing 80% of the sum of the monitored BFRs), while α-HBCDD could also be considered as a predominant congener (up to 26% of the sum of the monitored BFRs in fishes). nBFRs concentration levels were most of the time below the LOQ, except PBT, PBBz and HBBz which were more frequently detected at low levels. Also investigated in the study, BRPs exhibited high concentration levels in crustaceous (maximum value > 2700 pg/g ww).
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Affiliation(s)
- A Vénisseau
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France.
| | - E Bichon
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - A Brosseaud
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - V Vaccher
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - E Lesquin
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - F Larvor
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - S Durand
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - G Dervilly-Pinel
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - P Marchand
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
| | - B Le Bizec
- LABoratoire d'Étude des Résidus et Contaminants dans les Aliments (LABERCA), Oniris, INRA, Université Bretagne Loire, 44307, Nantes, France
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McGuire AH, Carey LM, de Serrano V, Dali S, Ghiladi RA. Peroxidase versus Peroxygenase Activity: Substrate Substituent Effects as Modulators of Enzyme Function in the Multifunctional Catalytic Globin Dehaloperoxidase. Biochemistry 2018; 57:4455-4468. [DOI: 10.1021/acs.biochem.8b00540] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Ashlyn H. McGuire
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, United States
| | - Leiah M. Carey
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, United States
| | - Vesna de Serrano
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, United States
| | - Safaa Dali
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, United States
| | - Reza A. Ghiladi
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695-8204, United States
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Koch C, Sures B. Environmental concentrations and toxicology of 2,4,6-tribromophenol (TBP). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 233:706-713. [PMID: 29126092 DOI: 10.1016/j.envpol.2017.10.127] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Revised: 10/29/2017] [Accepted: 10/29/2017] [Indexed: 06/07/2023]
Abstract
2,4,6-Tribromophenol is the most widely produced brominated phenol. In the present review, we summarize studies dealing with this substance from an environmental point of view. We cover concentrations in the abiotic and biotic environment including humans, toxicokinetics as well as toxicodynamics, and show gaps of the current knowledge about this chemical. 2,4,6-Tribomophenol occurs as an intermediate during the synthesis of brominated flame retardants and it similarly represents a degradation product of these substances. Moreover, it is used as a pesticide but also occurs as a natural product of some aquatic organisms. Due to its many sources, 2,4,6-tribromophenol is ubiquitously found in the environment. Nevertheless, not much is known about its toxicokinetics and toxicodynamics. It is also unclear which role the structural isomer 2,4,5-tribromophenol and several degradation products such as 2,4-dibromophenol play in the environment. Due to new flame retardants that enter the market and can degrade to 2,4,6-tribromophenol, this compound will remain relevant in future years - not only in aquatic matrices, but also in house dust and foodstuff, which are an important exposure route for humans.
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Affiliation(s)
- Christoph Koch
- Aquatic Ecology and Centre for Water and Environmental Research (ZWU), University Duisburg-Essen, 45141 Essen, Germany; Deutsche Rockwool GmbH & Co. KG, 45966 Gladbeck, Germany.
| | - Bernd Sures
- Aquatic Ecology and Centre for Water and Environmental Research (ZWU), University Duisburg-Essen, 45141 Essen, Germany
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Pivnenko K, Granby K, Eriksson E, Astrup TF. Recycling of plastic waste: Screening for brominated flame retardants (BFRs). WASTE MANAGEMENT (NEW YORK, N.Y.) 2017; 69:101-109. [PMID: 28869101 DOI: 10.1016/j.wasman.2017.08.038] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2017] [Revised: 07/27/2017] [Accepted: 08/21/2017] [Indexed: 05/28/2023]
Abstract
Flame retardants are chemicals vital for reducing risks of fire and preventing human casualties and property losses. Due to the abundance, low cost and high performance of bromine, brominated flame retardants (BFRs) have had a significant share of the market for years. Physical stability on the other hand, has resulted in dispersion and accumulation of selected BFRs in the environment and receiving biota. A wide range of plastic products may contain BFRs. This affects the quality of waste plastics as secondary resource: material recycling may potentially reintroduce the BFRs into new plastic product cycles and lead to increased exposure levels, e.g. through use of plastic packaging materials. To provide quantitative and qualitative data on presence of BFRs in plastics, we analysed bromophenols (tetrabromobisphenol A (TBBPA), dibromophenols (2,4- and 2,6-DBP) and 2,4,6-tribromophenol (2,4,6-TBP)), hexabromocyclododecane stereoisomers (α-, β-, and γ-HBCD), as well as selected polybrominated diphenyl ethers (PBDEs) in samples of household waste plastics, virgin and recycled plastics. A considerable number of samples contained BFRs, with highest concentrations associated with acrylonitrile butadiene styrene (ABS, up to 26,000,000ngTBBPA/g) and polystyrene (PS, up to 330,000ng∑HBCD/g). Abundancy in low concentrations of some BFRs in plastic samples suggested either unintended addition in plastic products or degradation of higher molecular weight BFRs. The presence of currently restricted flame retardants (PBDEs and HBCD) identified in the plastic samples illustrates that circular material flows may be contaminated for extended periods. The screening clearly showed a need for improved documentation and monitoring of the presence of BFRs in plastic waste routed to recycling.
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Affiliation(s)
- K Pivnenko
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark.
| | - K Granby
- National Food Institute, Technical University of Denmark, DK-2860 Søborg, Denmark
| | - E Eriksson
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
| | - T F Astrup
- Department of Environmental Engineering, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark
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Mizukawa H, Nomiyama K, Nakatsu S, Yamamoto M, Ishizuka M, Ikenaka Y, Nakayama SMM, Tanabe S. Anthropogenic and Naturally Produced Brominated Phenols in Pet Blood and Pet Food in Japan. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:11354-11362. [PMID: 28854783 DOI: 10.1021/acs.est.7b01009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Present study determined concentrations and residue patterns of bromophenols (BPhs) in whole blood samples of pet cats and pet dogs collected from veterinary hospitals in Japan. BPhs concentrations were higher in cat blood than in dog blood, with statistically insignificant differences (p = 0.07). Among the congeners, 2,4,6-tribromophenol (TBPh) constituted the majority of BPhs (>90%) detected in both species. Analysis of commercial pet food to estimate exposure routes showed that the most abundant congener in all pet food samples was 2,4,6-TBPh, accounting for >99% of total BPhs. This profile is quite similar to the blood samples of the pets, suggesting that diet might be an important exposure route for BPhs in pets. After incubation in polybrominated diphenyl ether (PBDE) mixtures (BDE-47, BDE-99 and BDE-209), 2,4,5-TBPh was found in dog liver microsomes but not in cat liver microsomes, implying species-specific metabolic capacities for PBDEs. Formation of 2,4,5-TBPh occurred by hydroxylation at the 1' carbon atom of the ether bond of BDE-99 is similar to human study reported previously. Hydroxylated PBDEs were not detected in cats or dogs; therefore, diphenyl ether bond cleavage of PBDEs can also be an important metabolic pathway for BPhs formation in cats and dogs.
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Affiliation(s)
- Hazuki Mizukawa
- Center for Marine Environmental Studies (CMES), Ehime University , Bunkyo-cho 2-5, Matsuyama, Ehime 790-8577, Japan
| | - Kei Nomiyama
- Center for Marine Environmental Studies (CMES), Ehime University , Bunkyo-cho 2-5, Matsuyama, Ehime 790-8577, Japan
| | - Susumu Nakatsu
- Nakatsu Veterinary Surgery, 2-2-5, Shorinjichonishi, Sakai-ku, Sakai-shi, Osaka 590-0960, Japan
| | - Miyuki Yamamoto
- Center for Marine Environmental Studies (CMES), Ehime University , Bunkyo-cho 2-5, Matsuyama, Ehime 790-8577, Japan
| | - Mayumi Ishizuka
- Laboratory of Toxicology, Graduate School of Veterinary Medicine, Hokkaido University , Kita 18, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan
| | - Yoshinori Ikenaka
- Laboratory of Toxicology, Graduate School of Veterinary Medicine, Hokkaido University , Kita 18, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan
- Water Research Group, Unit for Environmental Sciences and Management, North-West University , 53 Borcherd Street, Potchefstroom 2531, South Africa
| | - Shouta M M Nakayama
- Laboratory of Toxicology, Graduate School of Veterinary Medicine, Hokkaido University , Kita 18, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0818, Japan
| | - Shinsuke Tanabe
- Center for Marine Environmental Studies (CMES), Ehime University , Bunkyo-cho 2-5, Matsuyama, Ehime 790-8577, Japan
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McCombs NL, Smirnova T, Ghiladi RA. Oxidation of Pyrrole by Dehaloperoxidase-Hemoglobin: Chemoenzymatic Synthesis of Pyrrolin-2-Ones. Catal Sci Technol 2017; 7:3104-3118. [PMID: 29158890 PMCID: PMC5693384 DOI: 10.1039/c7cy00781g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The use of oxidoreductases as biocatalysts in the syntheses of functionalized, monomeric pyrroles has been a challenge owing to, among a number of factors, undesired polypyrrole formation. Here, we have investigated the ability of dehaloperoxidase (DHP), the coelomic hemoglobin from the terebellid polychaete Amphitrite ornata, to catalyze the H2O2-dependent oxidation of pyrroles as a new class of substrate for this enzyme. Substrate oxidation was observed for all compounds employed (pyrrole, N-methylpyrrole, 2-methylpyrrole, 3-methylpyrrole and 2,5-dimethylpyrrole) under both aerobic and anaerobic conditions. Using pyrrole as a representative substrate, only a single oxidation product, 4-pyrrolin-2-one, was observed, and notably without formation of polypyrrole. Reactivity could be initiated from all three biologically relevant oxidation states for this catalytic globin: ferric, ferrous and oxyferrous. Isotope labeling studies determined that the O-atom incorporated into the 4-pyrrolin-2-one product was derived exclusively from H2O2, indicative of a peroxygenase mechanism. Consistent with this observation, single- and double-mixing stopped-flow UV-visible spectroscopic studies supported Compound I, but not Compounds ES or II, as the catalytically-relevant ferryl intermediate involved in pyrrole oxidation. Electrophilic addition of the ferryl oxygen to pyrrole is proposed as the mechanism of O-atom transfer. The results demonstrate the breadth of chemical reactivity afforded by dehaloperoxidase, and provide further evidence for establishing DHP as a multifunctional globin with practical applications as a biocatalyst.
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Affiliation(s)
- Nikolette L McCombs
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina, 27695-8204 USA. Tel: +1 919 513 0680
| | - Tatyana Smirnova
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina, 27695-8204 USA. Tel: +1 919 513 0680
| | - Reza A Ghiladi
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina, 27695-8204 USA. Tel: +1 919 513 0680
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Kotik M, Vanacek P, Kunka A, Prokop Z, Damborsky J. Metagenome-derived haloalkane dehalogenases with novel catalytic properties. Appl Microbiol Biotechnol 2017; 101:6385-6397. [PMID: 28674849 DOI: 10.1007/s00253-017-8393-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2017] [Revised: 06/11/2017] [Accepted: 06/13/2017] [Indexed: 01/30/2023]
Abstract
Haloalkane dehalogenases (HLDs) are environmentally relevant enzymes cleaving a carbon-halogen bond in a wide range of halogenated pollutants. PCR with degenerate primers and genome-walking was used for the retrieval of four HLD-encoding genes from groundwater-derived environmental DNA. Using specific primers and the environmental DNA as a template, we succeeded in generating additional amplicons, resulting altogether in three clusters of sequences with each cluster comprising 8-13 closely related putative HLD-encoding genes. A phylogenetic analysis of the translated genes revealed that three HLDs are members of the HLD-I subfamily, whereas one gene encodes an enzyme from the subfamily HLD-II. Two metagenome-derived HLDs, eHLD-B and eHLD-C, each from a different subfamily, were heterologously produced in active form, purified and characterized in terms of their thermostability, pH and temperature optimum, quaternary structure, substrate specificity towards 30 halogenated compounds, and enantioselectivity. eHLD-B and eHLD-C showed striking differences in their activities, substrate preferences, and tolerance to temperature. Profound differences were also determined in the enantiopreference and enantioselectivity of these enzymes towards selected substrates. Comparing our data with those of known HLDs revealed that eHLD-C exhibits a unique combination of high thermostability, high activity, and an unusually broad pH optimum, which covers the entire range of pH 5.5-8.9. Moreover, a so far unreported high thermostability for HLDs was determined for this enzyme at pH values lower than 6.0. Thus, eHLD-C represents an attractive and novel biocatalyst for biotechnological applications.
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Affiliation(s)
- Michael Kotik
- Laboratory of Biotransformation, Institute of Microbiology, Czech Academy of Sciences, Videnska 1083, 142 20, Prague, Czech Republic
| | - Pavel Vanacek
- Loschmidt Laboratories, Department of Experimental Biology and Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic, Brno, Czech Republic
| | - Antonin Kunka
- Loschmidt Laboratories, Department of Experimental Biology and Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic, Brno, Czech Republic
| | - Zbynek Prokop
- Loschmidt Laboratories, Department of Experimental Biology and Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic, Brno, Czech Republic
| | - Jiri Damborsky
- Loschmidt Laboratories, Department of Experimental Biology and Centre for Toxic Compounds in the Environment RECETOX, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic, Brno, Czech Republic.
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Concurrent Haloalkanoate Degradation and Chlorate Reduction by Pseudomonas chloritidismutans AW-1 T. Appl Environ Microbiol 2017; 83:AEM.00325-17. [PMID: 28411224 DOI: 10.1128/aem.00325-17] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 04/09/2017] [Indexed: 11/20/2022] Open
Abstract
Haloalkanoates are environmental pollutants that can be degraded aerobically by microorganisms producing hydrolytic dehalogenases. However, there is a lack of information about the anaerobic degradation of haloalkanoates. Genome analysis of Pseudomonas chloritidismutans AW-1T, a facultative anaerobic chlorate-reducing bacterium, showed the presence of two putative haloacid dehalogenase genes, the l-DEX gene and dehI, encoding an l-2-haloacid dehalogenase (l-DEX) and a halocarboxylic acid dehydrogenase (DehI), respectively. Hence, we studied the concurrent degradation of haloalkanoates and chlorate as a yet-unexplored trait of strain AW-1T The deduced amino acid sequences of l-DEX and DehI revealed 33 to 37% and 26 to 86% identities with biochemically/structurally characterized l-DEX and the d- and dl-2-haloacid dehalogenase enzymes, respectively. Physiological experiments confirmed that strain AW-1T can grow on chloroacetate, bromoacetate, and both l- and d-α-halogenated propionates with chlorate as an electron acceptor. Interestingly, growth and haloalkanoate degradation were generally faster with chlorate as an electron acceptor than with oxygen as an electron acceptor. In line with this, analyses of l-DEX and DehI dehalogenase activities using cell-free extract (CFE) of strain AW-1T grown on dl-2-chloropropionate under chlorate-reducing conditions showed up to 3.5-fold higher dehalogenase activity than the CFE obtained from AW-1T cells grown on dl-2-chloropropionate under aerobic conditions. Reverse transcription-quantitative PCR showed that the l-DEX gene was expressed constitutively independently of the electron donor (haloalkanoates or acetate) or acceptor (chlorate or oxygen), whereas the expression of dehI was induced by haloalkanoates. Concurrent degradation of organic and inorganic halogenated compounds by strain AW-1T represents a unique metabolic capacity in a single bacterium, providing a new piece of the puzzle of the microbial halogen cycle.IMPORTANCE Halogenated organic and inorganic compounds are important environmental pollutants that have carcinogenic and genotoxic effects on both animals and humans. Previous research studied the degradation of organic and inorganic halogenated compounds separately but not concurrently. This study shows concurrent degradation of halogenated alkanoates and chlorate as an electron donor and acceptor, respectively, coupled to growth in a single bacterium, Pseudomonas chloritidismutans AW-1T Hence, besides biogenesis of molecular oxygen from chlorate reduction enabling a distinctive placement of strain AW-1T between aerobic and anaerobic microorganisms, we can now add another unique metabolic potential of this bacterium to the roster. The degradation of different halogenated compounds under anoxic conditions by a single bacterium is also of interest for the natural halogen cycle in different aquatic and terrestrial ecosystems where ample natural production of halogenated compounds has been documented.
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Agarwal V, Miles ZD, Winter JM, Eustáquio AS, El Gamal AA, Moore BS. Enzymatic Halogenation and Dehalogenation Reactions: Pervasive and Mechanistically Diverse. Chem Rev 2017; 117:5619-5674. [PMID: 28106994 PMCID: PMC5575885 DOI: 10.1021/acs.chemrev.6b00571] [Citation(s) in RCA: 235] [Impact Index Per Article: 33.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Naturally produced halogenated compounds are ubiquitous across all domains of life where they perform a multitude of biological functions and adopt a diversity of chemical structures. Accordingly, a diverse collection of enzyme catalysts to install and remove halogens from organic scaffolds has evolved in nature. Accounting for the different chemical properties of the four halogen atoms (fluorine, chlorine, bromine, and iodine) and the diversity and chemical reactivity of their organic substrates, enzymes performing biosynthetic and degradative halogenation chemistry utilize numerous mechanistic strategies involving oxidation, reduction, and substitution. Biosynthetic halogenation reactions range from simple aromatic substitutions to stereoselective C-H functionalizations on remote carbon centers and can initiate the formation of simple to complex ring structures. Dehalogenating enzymes, on the other hand, are best known for removing halogen atoms from man-made organohalogens, yet also function naturally, albeit rarely, in metabolic pathways. This review details the scope and mechanism of nature's halogenation and dehalogenation enzymatic strategies, highlights gaps in our understanding, and posits where new advances in the field might arise in the near future.
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Affiliation(s)
- Vinayak Agarwal
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
| | - Zachary D. Miles
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego
| | | | - Alessandra S. Eustáquio
- College of Pharmacy, Department of Medicinal Chemistry & Pharmacognosy and Center for Biomolecular Sciences, University of Illinois at Chicago
| | - Abrahim A. El Gamal
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
| | - Bradley S. Moore
- Center for Oceans and Human Health, Scripps Institution of Oceanography, University of California, San Diego
- Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego
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46
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Norrgran Engdahl J, Bignert A, Jones B, Athanassiadis I, Bergman Å, Weiss JM. Cats' Internal Exposure to Selected Brominated Flame Retardants and Organochlorines Correlated to House Dust and Cat Food. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:3012-3020. [PMID: 28192994 DOI: 10.1021/acs.est.6b05025] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Pet cats may be used as a biomarker for assessing exposures to organohalogen compounds (OHCs) adsorbed to household dust in home environments. This study explores two exposure routes of OHCs, ingestion of OHCs (i) via house dust and (ii) via cat food. House dust from 17 Swedish homes and serum from the participating families' pet cats were collected, and cat food was purchased matching the diet reported. Paired samples of cat serum, house dust, and cat food were analyzed for brominated flame retardants/natural products (polybrominated diphenyl ethers (PBDEs), decabromobiphenyl (BB-209), decabromodiphenyl ethane (DBDPE), 2,4,6-tribromophenol (2,4,6-TBP), OH-PBDEs) and organochlorines (polychlorinated biphenyls (PCBs), 1,1-bis(4,4'-dichlorodiphenyl)-2,2,2-trichloroethane (4,4'-DDT), 1,1-bis(4,4'-dichlorodiphenyl)-2,2-dichloroethene (4,4'-DDE), hexachlorobenzene (HCB), pentachlorophenol (PCP)). Significant correlations were found between serum and dust samples from the living rooms for BDE-47 (p < 0.035), BDE-99 (p < 0.035), and BDE-153 (p < 0.039), from the adult's bedroom for BDE-99 (p < 0.019) and from all rooms for BDE-99 (p < 0.020) and BB-209 (p < 0.048). This is the first time a correlation between cat serum levels and household dust has been established, a finding that supports the hypothesis that dust is a significant exposure route for cats. Serum levels were also significantly correlated with concentrations found in cat food for 6-OH-BDE47 (p < 0.002), 2,4,6-TBP (p < 0.035), and BB-209 (p < 0.007). DBDPE was found in high concentrations in all dust (median 154 pmol/g) and food samples (median 0.7 pmol/g lw) but was below detection in serum samples, suggesting low or no bioavailability for DBDPE in cats.
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Affiliation(s)
- J Norrgran Engdahl
- Department of Environmental Science and Analytical Chemistry, Stockholm University , SE-106 91 Stockholm, Sweden
| | - A Bignert
- Swedish Museum of Natural History , Frescativägen 40, SE-114 18 Stockholm, Sweden
| | - B Jones
- Department of Clinical Sciences, Swedish University of Agricultural Sciences , SE-750 07 Uppsala, Sweden
| | - I Athanassiadis
- Department of Environmental Science and Analytical Chemistry, Stockholm University , SE-106 91 Stockholm, Sweden
| | - Å Bergman
- Department of Environmental Science and Analytical Chemistry, Stockholm University , SE-106 91 Stockholm, Sweden
- Swedish Toxicology Sciences Research Centre (Swetox) , Forskargatan 20, SE-151 36 Södertälje, Sweden
| | - J M Weiss
- Department of Environmental Science and Analytical Chemistry, Stockholm University , SE-106 91 Stockholm, Sweden
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47
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Alonso MB, Maruya KA, Dodder NG, Lailson-Brito J, Azevedo A, Santos-Neto E, Torres JPM, Malm O, Hoh E. Nontargeted Screening of Halogenated Organic Compounds in Bottlenose Dolphins (Tursiops truncatus) from Rio de Janeiro, Brazil. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017; 51:1176-1185. [PMID: 28055195 PMCID: PMC6263163 DOI: 10.1021/acs.est.6b04186] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
To catalog the diversity and abundance of halogenated organic compounds (HOCs) accumulating in high trophic marine species from the southwestern Atlantic Ocean, tissue from bottlenose dolphins (Tursiops truncatus) stranded or incidentally captured along the coast of Rio de Janeiro, Brazil, were analyzed by a nontargeted approach based on GC×GC/TOF-MS. A total of 158 individual HOCs from 32 different structural classes were detected in the blubber of 4 adult male T. truncatus. Nearly 90% of the detected compounds are not routinely monitored in the environment. DDT-related and mirex/dechlorane-related compounds were the most abundant classes of anthropogenic origin. Methoxy-brominated diphenyl ethers (MeO-BDEs) and chlorinated methyl- and dimethyl bipyrroles (MBPs and DMBPs) were the most abundant natural products. Reported for the first time in southwestern Atlantic cetaceans and in contrast to North American marine mammals, chlorinated MBPs and DMBPs were more abundant than their brominated and/or mixed halogenated counterparts. HOC profiles in coastal T. truncatus from Brazil and California revealed a distinct difference, with a higher abundance of MeO-BDEs, mirex/dechloranes and chlorinated bipyrroles in the Brazilian dolphins. Thirty-six percent of the detected HOCs had an unknown structure. These results suggest broad geographical differences in the patterns of bioaccumulative chemicals found in the marine environment and indicate the need to develop more complete catalogs of HOCs from various marine environments.
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Affiliation(s)
- Mariana B. Alonso
- Graduate School of Public Health, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA
- Southern California Coastal Water Research Project Authority, 3535 Harbor Boulevard, Suite 110, Costa Mesa, CA 92626, USA
- Laboratory of Aquatic Mammals and Bioindicators (UERJ), R. São Francisco Xavier, 524 - S.4018 - Bl. E, Rio de Janeiro, RJ, Brasil, 20550-013
- Laboratory of Radioisotopes - Biophysics Institute (UFRJ), Av. Carlos Chagas Filho, 373 CCS - Bl.G, Rio de Janeiro, RJ, Brasil, 21941-902
| | - Keith A. Maruya
- Southern California Coastal Water Research Project Authority, 3535 Harbor Boulevard, Suite 110, Costa Mesa, CA 92626, USA
| | - Nathan G. Dodder
- Graduate School of Public Health, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA
- San Diego State University Research Foundation, 5250 Campanile Drive, San Diego, CA 92182, USA
| | - José Lailson-Brito
- Laboratory of Aquatic Mammals and Bioindicators (UERJ), R. São Francisco Xavier, 524 - S.4018 - Bl. E, Rio de Janeiro, RJ, Brasil, 20550-013
| | - Alexandre Azevedo
- Laboratory of Aquatic Mammals and Bioindicators (UERJ), R. São Francisco Xavier, 524 - S.4018 - Bl. E, Rio de Janeiro, RJ, Brasil, 20550-013
| | - Elitieri Santos-Neto
- Laboratory of Aquatic Mammals and Bioindicators (UERJ), R. São Francisco Xavier, 524 - S.4018 - Bl. E, Rio de Janeiro, RJ, Brasil, 20550-013
| | - Joao P. M. Torres
- Laboratory of Radioisotopes - Biophysics Institute (UFRJ), Av. Carlos Chagas Filho, 373 CCS - Bl.G, Rio de Janeiro, RJ, Brasil, 21941-902
| | - Olaf Malm
- Laboratory of Radioisotopes - Biophysics Institute (UFRJ), Av. Carlos Chagas Filho, 373 CCS - Bl.G, Rio de Janeiro, RJ, Brasil, 21941-902
| | - Eunha Hoh
- Graduate School of Public Health, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA
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Patra A, Park T, Kim M, Yu Z. Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances. J Anim Sci Biotechnol 2017; 8:13. [PMID: 28149512 PMCID: PMC5270371 DOI: 10.1186/s40104-017-0145-9] [Citation(s) in RCA: 204] [Impact Index Per Article: 29.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Accepted: 01/13/2017] [Indexed: 11/25/2022] Open
Abstract
Methanogenic archaea reside primarily in the rumen and the lower segments of the intestines of ruminants, where they utilize the reducing equivalents derived from rumen fermentation to reduce carbon dioxide, formic acid, or methylamines to methane (CH4). Research on methanogens in the rumen has attracted great interest in the last decade because CH4 emission from ruminants contributes to global greenhouse gas emission and represents a loss of feed energy. Some DNA-based phylogenetic studies have depicted a diverse and dynamic community of methanogens in the rumen. In the past decade, researchers have focused on elucidating the underpinning that determines and affects the diversity, composition, structure, and dynamics of methanogen community of the rumen. Concurrently, many researchers have attempted to develop and evaluate interventions to mitigate enteric CH4 emission. Although much work has been done using plant secondary metabolites, other approaches such as using nitrate and 3-nitrooxy propanol have also yielded promising results. Most of these antimethanogenic compounds or substances often show inconsistent results among studies and also lead to adverse effects on feed intake and digestion and other aspects of rumen fermentation when fed at doses high enough to achieve effective mitigation. This review provides a brief overview of the rumen methanogens and then an appraisal of most of the antimethanogenic compounds and substances that have been evaluated both in vitro and in vivo. Knowledge gaps and future research needs are also discussed with a focus on methanogens and methane mitigation.
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Affiliation(s)
- Amlan Patra
- Department of Animal Sciences, The Ohio State University, 2029 Fyffe Road, Columbus, OH 43210 USA.,Department of Animal Nutrition, West Bengal University of Animal and Fishery Sciences, 37 K. B. Sarani, Belgachia, Kolkata, 700037 India
| | - Tansol Park
- Department of Animal Sciences, The Ohio State University, 2029 Fyffe Road, Columbus, OH 43210 USA
| | - Minseok Kim
- Animal Nutrition and Physiology Team, National Institute of Animal Science, Rural Development Administration, Wanju, 55365 Republic of Korea
| | - Zhongtang Yu
- Department of Animal Sciences, The Ohio State University, 2029 Fyffe Road, Columbus, OH 43210 USA
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Maegawa T, Miki Y, Hirata Y, Makino N, Hirose Y, Nogata M, Nakamura A, Hamamoto H. Halogenation of Dimethyl Indole-2,3-dicarboxylates Using PhI(OAc)2 and Alkali Metal Halide. HETEROCYCLES 2017. [DOI: 10.3987/com-17-13732] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Zou H, Jiang J, Yi N, Fu W, Deng W, Xiang J. Highly Efficient Synthesis ofα-Halomethylketones via Ce(SO4)2/Acid Co-Catalyzed Hydration of Alkynes. CHINESE J CHEM 2016. [DOI: 10.1002/cjoc.201600417] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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