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Basinski JJ, Bone SE, Klein AR, Thongsomboon W, Mitchell V, Shukle JT, Druschel GK, Thompson A, Aristilde L. Unraveling iron oxides as abiotic catalysts of organic phosphorus recycling in soil and sediment matrices. Nat Commun 2024; 15:5930. [PMID: 39025840 PMCID: PMC11258345 DOI: 10.1038/s41467-024-47931-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2023] [Accepted: 04/16/2024] [Indexed: 07/20/2024] Open
Abstract
In biogeochemical phosphorus cycling, iron oxide minerals are acknowledged as strong adsorbents of inorganic and organic phosphorus. Dephosphorylation of organic phosphorus is attributed only to biological processes, but iron oxides could also catalyze this reaction. Evidence of this abiotic catalysis has relied on monitoring products in solution, thereby ignoring iron oxides as both catalysts and adsorbents. Here we apply high-resolution mass spectrometry and X-ray absorption spectroscopy to characterize dissolved and particulate phosphorus species, respectively. In soil and sediment samples reacted with ribonucleotides, we uncover the abiotic production of particulate inorganic phosphate associated specifically with iron oxides. Reactions of various organic phosphorus compounds with the different minerals identified in the environmental samples reveal up to ten-fold greater catalytic reactivities with iron oxides than with silicate and aluminosilicate minerals. Importantly, accounting for inorganic phosphate both in solution and mineral-bound, the dephosphorylarion rates of iron oxides were within reported enzymatic rates in soils. Our findings thus imply a missing abiotic axiom for organic phosphorus mineralization in phosphorus cycling.
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Affiliation(s)
- Jade J Basinski
- Department of Civil and Environmental Engineering, Northwestern University, Evanston, IL, USA
| | - Sharon E Bone
- Stanford Synchrotron Radiation Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Annaleise R Klein
- Department of Civil and Environmental Engineering, Northwestern University, Evanston, IL, USA
- Australian Synchrotron, Australian Nuclear Science and Technology Organisation, Clayton, VIC, Australia
| | - Wiriya Thongsomboon
- Department of Civil and Environmental Engineering, Northwestern University, Evanston, IL, USA
- Department of Chemistry, Mahasarakham University, Mahasarakham, Thailand
| | - Valerie Mitchell
- Australian Synchrotron, Australian Nuclear Science and Technology Organisation, Clayton, VIC, Australia
| | - John T Shukle
- Department of Earth Sciences, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA
- ZevRoss Spatial Analysis, Ithaca, NY, USA
| | - Gregory K Druschel
- Department of Earth Sciences, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA
| | - Aaron Thompson
- Department of Crop and Soil Sciences, University of Georgia, Athens, GA, USA
| | - Ludmilla Aristilde
- Department of Civil and Environmental Engineering, Northwestern University, Evanston, IL, USA.
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2
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Ouyang M, Tian D, Niklas KJ, Yan Z, Han W, Yu Q, Chen G, Ji C, Tang Z, Fang J. The scaling of elemental stoichiometry and growth rate over the course of bamboo ontogeny. THE NEW PHYTOLOGIST 2024; 241:1088-1099. [PMID: 37991013 DOI: 10.1111/nph.19408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Accepted: 10/31/2023] [Indexed: 11/23/2023]
Abstract
Stoichiometric rules may explain the allometric scaling among biological traits and body size, a fundamental law of nature. However, testing the scaling of elemental stoichiometry and growth to size over the course of plant ontogeny is challenging. Here, we used a fast-growing bamboo species to examine how the concentrations and contents of carbon (C), nitrogen (N) and phosphorus (P), relative growth rate (G), and nutrient productivity scale with whole-plant mass (M) at the culm elongation and maturation stages. The whole-plant C content vs M and N content vs P content scaled isometrically, and the N or P content vs M scaled as a general 3/4 power function across both growth stages. The scaling exponents of G vs M and N (and P) productivity in newly grown mass vs M relationships across the whole growth stages decreased as a -1 power function. These findings reveal the previously undocumented generality of stoichiometric allometries over the course of plant ontogeny and provide new insights for understanding the origin of ubiquitous quarter-power scaling laws in the biosphere.
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Affiliation(s)
- Ming Ouyang
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Di Tian
- State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing, 100083, China
| | - Karl J Niklas
- Department of Plant Biology, Cornell University, Ithaca, NY, 14850, USA
| | - Zhengbing Yan
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Wenxuan Han
- Key Laboratory of Plant-Soil Interactions, Ministry of Education, College of Resources and Environmental Sciences, China Agricultural University, Beijing, 100193, China
| | - Qingshui Yu
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Guoping Chen
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Chengjun Ji
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Zhiyao Tang
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Jingyun Fang
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
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3
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Szasz A. Peto's "Paradox" and Six Degrees of Cancer Prevalence. Cells 2024; 13:197. [PMID: 38275822 PMCID: PMC10814230 DOI: 10.3390/cells13020197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/15/2024] [Accepted: 01/19/2024] [Indexed: 01/27/2024] Open
Abstract
Peto's paradox and the epidemiologic observation of the average six degrees of tumor prevalence are studied and hypothetically solved. A simple consideration, Petho's paradox challenges our intuitive understanding of cancer risk and prevalence. Our simple consideration is that the more a cell divides, the higher the chance of acquiring cancerous mutations, and so the larger or longer-lived organisms have more cells and undergo more cell divisions over their lifetime, expecting to have a higher risk of developing cancer. Paradoxically, it is not supported by the observations. The allometric scaling of species could answer the Peto paradox. Another paradoxical human epidemiology observation in six average mutations is necessary for cancer prevalence, despite the random expectations of the tumor causes. To solve this challenge, game theory could be applied. The inherited and random DNA mutations in the replication process nonlinearly drive cancer development. The statistical variance concept does not reasonably describe tumor development. Instead, the Darwinian natural selection principle is applied. The mutations in the healthy organism's cellular population can serve the species' evolutionary adaptation by the selective pressure of the circumstances. Still, some cells collect multiple uncorrected mutations, adapt to the extreme stress in the stromal environment, and develop subclinical phases of cancer in the individual. This process needs extensive subsequent DNA replications to heritage and collect additional mutations, which are only marginal alone. Still, together, they are preparing for the first stage of the precancerous condition. In the second stage, when one of the caretaker genes is accidentally mutated, the caused genetic instability prepares the cell to fight for its survival and avoid apoptosis. This can be described as a competitive game. In the third stage, the precancerous cell develops uncontrolled proliferation with the damaged gatekeeper gene and forces the new game strategy with binary cooperation with stromal cells for alimentation. In the fourth stage, the starving conditions cause a game change again, starting a cooperative game, where the malignant cells cooperate and force the cooperation of the stromal host, too. In the fifth stage, the resetting of homeostasis finishes the subclinical stage, and in the fifth stage, the clinical phase starts. The prevention of the development of mutated cells is more complex than averting exposure to mutagens from the environment throughout the organism's lifetime. Mutagenic exposure can increase the otherwise random imperfect DNA reproduction, increasing the likelihood of cancer development, but mutations exist. Toxic exposure is more challenging; it may select the tolerant cells on this particular toxic stress, so these mutations have more facility to avoid apoptosis in otherwise collected random mutational states.
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Affiliation(s)
- Andras Szasz
- Department of Biotechnics, Hungarian University of Agriculture and Life Sciences, 2100 Gödöllő, Hungary
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4
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Neijnens FK, Moreira H, de Jonge MMJ, Linssen BBHP, Huijbregts MAJ, Geerling GW, Schipper AM. Effects of nutrient enrichment on freshwater macrophyte and invertebrate abundance: A meta-analysis. GLOBAL CHANGE BIOLOGY 2024; 30:e17094. [PMID: 38273479 DOI: 10.1111/gcb.17094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 10/27/2023] [Accepted: 11/24/2023] [Indexed: 01/27/2024]
Abstract
External nutrient loading can cause large changes in freshwater ecosystems. Many local field and laboratory experiments have investigated ecological responses to nutrient addition. However, these findings are difficult to generalize, as the responses observed may depend on the local context and the resulting nutrient concentrations in the receiving water bodies. In this research, we combined and analysed data from 131 experimental studies containing 3054 treatment-control abundance ratios to assess the responses of freshwater taxa along a gradient of elevated nutrient concentrations. We carried out a systematic literature search in order to identify studies that report the abundance of invertebrate, macrophyte, and fish taxa in relation to the addition of nitrogen, phosphorus, or both. Next, we established mixed-effect meta-regression models to relate the biotic responses to the concentration gradients of both nutrients. We quantified the responses based on various abundance-based metrics. We found no responses to the mere addition of nutrients, apart from an overall increase of total invertebrate abundance. However, when we considered the gradients of N and P enrichment, we found responses to both nutrients for all abundance metrics. Abundance tended to increase at low levels of N enrichment, yet decreased at the high end of the concentration gradient (1-10 mg/L, depending on the P concentration). Responses to increasing P concentrations were mostly positive. For fish, we found too few data to perform a meaningful analysis. The results of our research highlight the need to consider the level of nutrient enrichment rather than the mere addition of nutrients in order to better understand broad-scale responses of freshwater biota to eutrophication, as a key step to identify effective conservation strategies for freshwater ecosystems.
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Affiliation(s)
- Floris K Neijnens
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
- Deltares, Delft, The Netherlands
| | - Hadassa Moreira
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
| | - Melinda M J de Jonge
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
| | - Bart B H P Linssen
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
| | - Mark A J Huijbregts
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
| | - Gertjan W Geerling
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
- Deltares, Delft, The Netherlands
| | - Aafke M Schipper
- Department of Environmental Science, Radboud Institute for Biological and Environmental Sciences (RIBES), Radboud University, Nijmegen, The Netherlands
- PBL Netherlands Environmental Assessment Agency, The Hague, The Netherlands
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5
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Canning AD, Death RG. Establishing riverine nutrient criteria using individual taxa thresholds. WATER RESEARCH 2023; 246:120731. [PMID: 37844342 DOI: 10.1016/j.watres.2023.120731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 09/29/2023] [Accepted: 10/10/2023] [Indexed: 10/18/2023]
Abstract
Nutrient enrichment is one of the most pervasive impacts on aquatic ecosystems globally. Approaches to establish nutrient criteria that safeguard aquatic ecosystem health are highly variable and, in many instances, criteria are derived from correlations between in-situ nutrient concentrations and biological indices. Summarising entire assemblages with a single index can result in a substantial loss of information and potentially weaker relationships. In this study, we compared the derivation of nutrient criteria using biological indices and those from individual taxa for rivers and streams in New Zealand. Random forest models, including nutrient concentrations, were built to predict two biological indices and individual taxa across New Zealand's river monitoring network. For all acceptable models, the response of the biological indices and individual taxa to increasing Dissolved Inorganic Nitrogen (DIN) and Dissolved Reactive Phosphorus (DRP) were then predicted for every river reach across the nation, and nutrient concentrations that protected 80% of taxa were then identified. Models for the biological indices were poor but were good for most of the taxa, with nutrient concentrations almost always being the most influential factor. To ensure persistence of at least 80% of the taxa within a river reach, we estimated that DIN (Dissolved Inorganic Nitrogen) concentrations would need to be below 0.57-1.32 mg/L, and DRP (Dissolved Reactive Phosphorus) concentrations below 0.019-0.033 mg/L, depending on the river type. In general, high order, low slope rivers and streams required more stringent nutrient criteria than steep, low order streams. The link between nutrient concentrations and biological indices were weak and likely suffer from the loss of information from summarising an entire assemblage into a single numeric. We consider that the derivation of nutrient criteria for waterways should also examine the individual relationships with the taxa in a river system to establish protection for a desired proportion of taxa.
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Affiliation(s)
- A D Canning
- Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), James Cook University, 1 James Cook Drive, Townsville 4811, Australia; Faculty of Science and Engineering, Southern Cross University, 1 Military Drive, Lismore 2480, Australia.
| | - R G Death
- School of Natural Sciences, Massey University, Private Bag 11 222, Palmerston North 4442, New Zealand
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6
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El-Sabaawi RW, Lemmen KD, Jeyasingh PD, Declerck SAJ. SEED: A framework for integrating ecological stoichiometry and eco-evolutionary dynamics. Ecol Lett 2023; 26 Suppl 1:S109-S126. [PMID: 37840025 DOI: 10.1111/ele.14285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 06/01/2023] [Accepted: 06/04/2023] [Indexed: 10/17/2023]
Abstract
Characterising the extent and sources of intraspecific variation and their ecological consequences is a central challenge in the study of eco-evolutionary dynamics. Ecological stoichiometry, which uses elemental variation of organisms and their environment to understand ecosystem patterns and processes, can be a powerful framework for characterising eco-evolutionary dynamics. However, the current emphasis on the relative content of elements in the body (i.e. organismal stoichiometry) has constrained its application. Intraspecific variation in the rates at which elements are acquired, assimilated, allocated or lost is often greater than the variation in organismal stoichiometry. There is much to gain from studying these traits together as components of an 'elemental phenotype'. Furthermore, each of these traits can have distinct ecological effects that are underappreciated in the current literature. We propose a conceptual framework that explores how microevolutionary change in the elemental phenotype occurs, how its components interact with each other and with other traits, and how its changes can affect a wide range of ecological processes. We demonstrate how the framework can be used to generate novel hypotheses and outline pathways for future research that enhance our ability to explain, analyse and predict eco-evolutionary dynamics.
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Affiliation(s)
- Rana W El-Sabaawi
- Department of Biology, University of Victoria, Victoria, British Columbia, Canada
| | - Kimberley D Lemmen
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands
| | - Punidan D Jeyasingh
- Department of Integrative Biology, Oklahoma State University, Stillwater, Oklahoma, USA
| | - Steven A J Declerck
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands
- Department of Biology, Laboratory of Aquatic Ecology, Evolution and Conservation, KULeuven, Leuven, Belgium
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7
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Ji P, Chen J, Zhou A, Chen R, Ding G, Wang H, Chen S, Chen F. Anthropogenic atmospheric deposition caused the nutrient and toxic metal enrichment of the enclosed lakes in North China. JOURNAL OF HAZARDOUS MATERIALS 2023; 448:130972. [PMID: 36860080 DOI: 10.1016/j.jhazmat.2023.130972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 01/17/2023] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
Anthropogenic emissions have resulted in increases in the atmospheric fluxes of both nutrient and toxic elements. However, the long-term geochemical impacts on lake sediments of deposition activities have not been clearly clarified. We selected two small enclosed lakes in northern China-Gonghai, strongly influenced by anthropogenic activities, and Yueliang lake, relatively weakly influenced by anthropogenic activities-to reconstruct historical trends of atmospheric deposition on the geochemistry of the recent sediments. The results showed an abrupt rise in the nutrient levels in Gonghai and the enrichment of toxic metal elements from 1950 (the Anthropocene) onwards. While, at Yueliang lake, the rise on TN was from 1990 onwards. These consequences are attributable to the aggravation of anthropogenic atmospheric deposition in N, P and toxic metals, from fertilizer consumption, mining and coal combustion. The intensity of anthropogenic deposition is considerable, which leave a significant stratigraphic signal of the Anthropocene in lake sediments.
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Affiliation(s)
- Panpan Ji
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Jianhui Chen
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China.
| | - Aifeng Zhou
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Ruijin Chen
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Guoqiang Ding
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China
| | - Haipeng Wang
- State Key Laboratory of Cryospheric Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Shengqian Chen
- ALPHA, State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research (ITPCAS), Chinese Academy of Sciences (CAS), Beijing 100101, China
| | - Fahu Chen
- MOE Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou University, Lanzhou 730000, China; ALPHA, State Key Laboratory of Tibetan Plateau Earth System, Environment and Resources (TPESER), Institute of Tibetan Plateau Research (ITPCAS), Chinese Academy of Sciences (CAS), Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
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8
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Lemmen KD, Zhou L, Papakostas S, Declerck SAJ. An experimental test of the growth rate hypothesis as a predictive framework for microevolutionary adaptation. Ecology 2023; 104:e3853. [PMID: 36054549 PMCID: PMC10078216 DOI: 10.1002/ecy.3853] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 06/30/2022] [Accepted: 07/01/2022] [Indexed: 02/01/2023]
Abstract
The growth rate hypothesis (GRH) posits that the relative body phosphorus content of an organism is positively related to somatic growth rate, as protein synthesis, which is necessary for growth, requires P-rich rRNA. This hypothesis has strong support at the interspecific level. Here, we explore the use of the GRH to predict microevolutionary responses in consumer body stoichiometry. For this, we subjected populations of the rotifer Brachionus calyciflorus to selection for fast population growth rate (PGR) in P-rich (HPF) and P-poor (LPF) food environments. With common garden transplant experiments, we demonstrate that in HP populations evolution toward increased PGR was concomitant with an increase in relative phosphorus content. In contrast, LP populations evolved higher PGR without an increase in relative phosphorus content. We conclude that the GRH has the potential to predict microevolutionary change, but that its application is contingent on the environmental context. Our results highlight the potential of cryptic evolution in determining the performance response of populations to elemental limitation of their food resources.
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Affiliation(s)
- Kimberley D Lemmen
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands
| | - Libin Zhou
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands
| | | | - Steven A J Declerck
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands.,Department of Biology, Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Leuven, Belgium
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9
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Liu H, Pausch J, Wu Y, Xu H, Liu G, Ma L, Xue S. Implications of plant N/P stoichiometry influenced by arbuscular mycorrhizal fungi for stability of plant species and community in response to nutrient limitation. OIKOS 2022. [DOI: 10.1111/oik.09649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Hongfei Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), Univ. of Bayreuth Bayreuth Germany
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
| | - Johanna Pausch
- Agroecology, Bayreuth Center of Ecology and Environmental Research (BayCEER), Univ. of Bayreuth Bayreuth Germany
| | - Yang Wu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
| | - Hongwei Xu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
| | - Guobin Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
| | - LiHui Ma
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
| | - Sha Xue
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F Univ. Yangling PR China
- Chinese Academy of Sciences and Ministry Water Resources, Inst. of Soil and Water Conservation Yangling PR China
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10
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Isanta‐Navarro J, Prater C, Peoples LM, Loladze I, Phan T, Jeyasingh PD, Church MJ, Kuang Y, Elser JJ. Revisiting the growth rate hypothesis: Towards a holistic stoichiometric understanding of growth. Ecol Lett 2022; 25:2324-2339. [PMID: 36089849 PMCID: PMC9595043 DOI: 10.1111/ele.14096] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 07/27/2022] [Accepted: 07/31/2022] [Indexed: 01/11/2023]
Abstract
The growth rate hypothesis (GRH) posits that variation in organismal stoichiometry (C:P and N:P ratios) is driven by growth-dependent allocation of P to ribosomal RNA. The GRH has found broad but not uniform support in studies across diverse biota and habitats. We synthesise information on how and why the tripartite growth-RNA-P relationship predicted by the GRH may be uncoupled and outline paths for both theoretical and empirical work needed to broaden the working domain of the GRH. We found strong support for growth to RNA (r2 = 0.59) and RNA-P to P (r2 = 0.63) relationships across taxa, but growth to P relationships were relatively weaker (r2 = 0.09). Together, the GRH was supported in ~50% of studies. Mechanisms behind GRH uncoupling were diverse but could generally be attributed to physiological (P accumulation in non-RNA pools, inactive ribosomes, translation elongation rates and protein turnover rates), ecological (limitation by resources other than P), and evolutionary (adaptation to different nutrient supply regimes) causes. These factors should be accounted for in empirical tests of the GRH and formalised mathematically to facilitate a predictive understanding of growth.
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Affiliation(s)
- Jana Isanta‐Navarro
- Flathead Lake Biological StationUniversity of MontanaPolsonMontanaUSA,Department of BiologyLund UniversityLundSweden
| | - Clay Prater
- Department of Integrative BiologyUniversity of OklahomaStillwaterOklahomaUSA
| | - Logan M. Peoples
- Flathead Lake Biological StationUniversity of MontanaPolsonMontanaUSA
| | - Irakli Loladze
- Bryan College of Health Sciences, Lincoln, NE, USA and School of Mathematical & Statistical SciencesArizona State UniversityTempeArizonaUSA
| | - Tin Phan
- Division of Theoretical Biology and BiophysicsLos Alamos National LaboratoryLos AlamosNew MexicoUSA
| | | | - Matthew J. Church
- Flathead Lake Biological StationUniversity of MontanaPolsonMontanaUSA
| | - Yang Kuang
- School of Life SciencesArizona State UniversityTempeArizonaUSA
| | - James J. Elser
- Flathead Lake Biological StationUniversity of MontanaPolsonMontanaUSA
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11
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Lopez MLD, Lin YY, Schneider SQ, Hsieh CH, Shiah FK, Machida RJ. Allometric scaling of interspecific RNA transcript abundance to extend the use of metatranscriptomics in characterizing complex communities. Mol Ecol Resour 2022; 23:52-63. [PMID: 36062315 PMCID: PMC10087904 DOI: 10.1111/1755-0998.13711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 08/17/2022] [Accepted: 08/30/2022] [Indexed: 11/27/2022]
Abstract
Metatranscriptomics allows profiling of community messenger RNA (mRNA) and ribosomal RNA (rRNA) transcript abundance under certain environmental conditions. However, variations in the proportion of RNA transcripts across different community size structures remain less explained, thus limiting the possible applications of metatranscriptomics in community studies. Here, we extended the assumptions of the growth-rate hypothesis (GRH) and the metabolic theory of ecology (MTE) to validate the allometric scaling of interspecific RNA transcript (mRNA and rRNA) abundance through metatranscriptomic analysis of mock communities consisting of model organisms. Results suggest that body size imposes significant constraints on RNA transcript abundance. Interestingly, the relationship between the total mitochondrial transcript abundance (mRNA and rRNA slopes were -0.30 and -0.28, respectively) and body size aligned with the MTE assumptions with slopes close to -¼, while the nuclear transcripts displayed much steeper slopes (mRNA and rRNA slopes were -0.33 and -0.40, respectively). The assumed temperature dependence was not observed in this study. At the gene level, the allometric slopes range from 0 to -1. Overall, the above results showed that larger individuals have lesser RNA transcript abundance per tissue mass than smaller ones regardless of temperature. Analyses of field-collected microcrustacean zooplankton samples demonstrated that the correction of size effect, using the allometric exponents derived from the model organism mock community, explains better the patterns of interspecific RNA transcripts abundance within the metatranscriptome. Integrating allometry with metatranscriptomics can extend the use of RNA transcript reads in estimating ecological processes within complex communities.
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Affiliation(s)
- Mark Louie D Lopez
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and National Taiwan Normal University, Taipei, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
| | - Ya-Ying Lin
- Biodiversity Research Center, Academia Sinica, Nankang District, Taipei, Taiwan
| | - Stephan Q Schneider
- Institute of Organismic and Cellular Biology, Academia Sinica, Nankang District, Taipei, Taiwan
| | - Chih-Hao Hsieh
- Institute of Oceanography, National Taiwan University, Da'an District, Taipei, Taiwan.,Environmental Change Research Center, Academia Sinica, Nankang District, Taipei, Taiwan
| | - Fuh-Kwo Shiah
- Environmental Change Research Center, Academia Sinica, Nankang District, Taipei, Taiwan
| | - Ryuji J Machida
- Biodiversity Research Center, Academia Sinica, Nankang District, Taipei, Taiwan
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12
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Coordination of Phosphate and Magnesium Metabolism in Bacteria. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2022; 1362:135-150. [PMID: 35288878 DOI: 10.1007/978-3-030-91623-7_12] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The majority of cellular phosphate (PO4-3; Pi) exists as nucleoside triphosphates, mainly adenosine triphosphate (ATP), and ribosomal RNA (rRNA). ATP and rRNA are also the largest cytoplasmic reservoirs of magnesium (Mg2+), the most abundant divalent cation in living cells. The co-occurrence of these ionic species in the cytoplasm is not coincidental. Decades of work in the Pi and Mg2+ starvation responses of two model enteric bacteria, Escherichia coli and Salmonella enterica, have led to the realization that the metabolisms of Pi and Mg2+ are interconnected. Bacteria must acquire these nutrients in a coordinated manner to achieve balanced growth and avoid loss of viability. In this chapter, we will review how bacteria sense and respond to fluctuations in environmental and intracellular Pi and Mg2+ levels. We will also discuss how these two compounds are functionally linked, and how cells elicit physiological responses to maintain their homeostasis.
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13
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Kaspari M, Joern A, Welti EAR. How and why grasshopper community maturation rates are slowing on a North American tall grass prairie. Biol Lett 2022; 18:20210510. [PMID: 35078328 PMCID: PMC8790374 DOI: 10.1098/rsbl.2021.0510] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 12/13/2021] [Indexed: 01/28/2023] Open
Abstract
Invertebrate growth rates have been changing in the Anthropocene. We examine rates of seasonal maturation in a grasshopper community that has been declining annually greater than 2% a year over 34 years. As this grassland has experienced a 1°C increase in temperature, higher plant biomass and lower nutrient densities, the community is maturing more slowly. Community maturation had a nutritional component: declining in years/watersheds with lower plant nitrogen. The effects of fire frequency were consistent with effects of plant nitrogen. Principal components analysis also suggests associated changes in species composition-declines in the densities of grass feeders were associated with declines in community maturation rates. We conclude that slowed maturation rates-a trend counteracted by frequent burning-likely contribute to long-term decline of this dominant herbivore.
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Affiliation(s)
- Michael Kaspari
- Geographical Ecology Group, University of Oklahoma, Norman, OK, USA
| | - Anthony Joern
- Division of Biology, Kansas State University, Manhattan, KS, USA
| | - Ellen A. R. Welti
- Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt, Gelnhausen, Germany
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14
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Zou S, Fu R, Deng H, Zhang Q, Gentekaki E, Gong J. Coupling between Ribotypic and Phenotypic Traits of Protists across Life Cycle Stages and Temperatures. Microbiol Spectr 2021; 9:e0173821. [PMID: 34817220 PMCID: PMC8612162 DOI: 10.1128/spectrum.01738-21] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 10/16/2021] [Indexed: 01/04/2023] Open
Abstract
Relationships between ribotypic and phenotypic traits of protists across life cycle stages remain largely unknown. Herein, we used single cells of two soil and two marine ciliate species to examine phenotypic and ribotypic traits and their relationships across lag, log, plateau, cystic stages and temperatures. We found that Colpoda inflata and Colpoda steinii demonstrated allometric relationships between 18S ribosomal DNA (rDNA) copy number per cell (CNPC), cell volume (CV), and macronuclear volume across all life cycle stages. Integrating previously reported data of Euplotes vannus and Strombidium sulcatum indicated taxon-dependent rDNA CNPC-CV functions. Ciliate and prokaryote data analysis revealed that the rRNA CNPC followed a unified power-law function only if the rRNA-deficient resting cysts were not considered. Hence, a theoretical framework was proposed to estimate the relative quantity of resting cysts in the protistan populations with total cellular rDNA and rRNA copy numbers. Using rDNA CNPC was a better predictor of growth rate at a given temperature than rRNA CNPC and CV, suggesting replication of redundant rDNA operons as a key factor that slows cell division. Single-cell high-throughput sequencing and analysis after correcting sequencing errors revealed multiple rDNA and rRNA variants per cell. Both encystment and temperature affected the number of rDNA and rRNA variants in several cases. The divergence of rDNA and rRNA sequence in a single cell ranged from 1% to 10% depending on species. These findings have important implications for inferring cell-based biological traits (e.g., species richness, abundance and biomass, activity, and community structure) of protists using molecular approaches. IMPORTANCE Based on phenotypic traits, traditional surveys usually characterize organismal richness, abundance, biomass, and growth potential to describe diversity, organization, and function of protistan populations and communities. The rRNA gene (rDNA) and its transcripts have been widely used as molecular markers in ecological studies of protists. Nevertheless, the manner in which these molecules relate to cellular (organismal) and physiological traits remains poorly understood, which could lead to misinterpretations of protistan diversity and ecology. The current research highlights the dynamic nature of cellular rDNA and rRNA contents, which tightly couple with multiple phenotypic traits in ciliated protists. We demonstrate that quantity of resting cysts and maximum growth rate of a population can be theoretically estimated using ribotypic trait-based models. The intraindividual sequence polymorphisms of rDNA and rRNA can be influenced by encystment and temperature, which should be considered when interpreting species-level diversity and community structure of microbial eukaryotes.
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Affiliation(s)
- Songbao Zou
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
- University of Chinese Academy of Sciences, Beijing, China
- Key Laboratory of Healthy Freshwater Aquaculture, Ministry of Agriculture and Rural Affairs, Huzhou, China
- Key Laboratory of Fish Health and Nutrition of Zhejiang Province, Zhejiang Institute of Freshwater Fisheries, Huzhou, China
| | - Rao Fu
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
- University of Chinese Academy of Sciences, Beijing, China
- Shandong Institute of Sericulture, Shandong Academy of Agricultural Sciences, Yantai, China
| | - Huiwen Deng
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China
| | - Qianqian Zhang
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Eleni Gentekaki
- School of Science, Mae Fah Luang University, Chiang Rai, Thailand
| | - Jun Gong
- School of Marine Sciences, Sun Yat-sen University, Zhuhai, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China
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15
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Raffard A, Bestion E, Cote J, Haegeman B, Schtickzelle N, Jacob S. Dispersal syndromes can link intraspecific trait variability and meta-ecosystem functioning. Trends Ecol Evol 2021; 37:322-331. [PMID: 34952726 DOI: 10.1016/j.tree.2021.12.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 11/24/2021] [Accepted: 12/01/2021] [Indexed: 10/19/2022]
Abstract
Dispersal mediates the flow of organisms in meta-communities and subsequently energy and material flows in meta-ecosystems. Individuals within species often vary in dispersal tendency depending on their phenotypic traits (i.e., dispersal syndromes), but the implications of dispersal syndromes for meta-ecosystems have been rarely studied. Using empirical examples on vertebrates, arthropods, and microbes, we highlight that key functional traits can be linked to dispersal. We argue that this coupling between dispersal and functional traits can have consequences for meta-ecosystem functioning, mediating flows of functional traits and thus the spatial heterogeneity of ecosystem functions. As dispersal syndromes may be genetically determined, the spatial heterogeneity of functional traits may be further carried over across generations and link meta-ecosystem functioning to evolutionary dynamics.
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Affiliation(s)
- Allan Raffard
- Université Catholique de Louvain, Earth and Life Institute, Biodiversity Research Centre, Louvain-la-Neuve, Belgium.
| | - Elvire Bestion
- Station d'Écologie Théorique et Expérimentale du CNRS à Moulis, Moulis, France
| | - Julien Cote
- CNRS, UPS, IRD, Laboratoire Évolution et Diversité Biologique, UAR 5174, 31062, Cedex 9 Toulouse, France
| | - Bart Haegeman
- Station d'Écologie Théorique et Expérimentale du CNRS à Moulis, Moulis, France
| | - Nicolas Schtickzelle
- Université Catholique de Louvain, Earth and Life Institute, Biodiversity Research Centre, Louvain-la-Neuve, Belgium
| | - Staffan Jacob
- Station d'Écologie Théorique et Expérimentale du CNRS à Moulis, Moulis, France
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16
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Kaspari M. The Invisible Hand of the Periodic Table: How Micronutrients Shape Ecology. ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS 2021. [DOI: 10.1146/annurev-ecolsys-012021-090118] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Beyond the better-studied carbohydrates and the macronutrients nitrogen and phosphorus, a remaining 20 or so elements are essential for life and have distinct geographical distributions, making them of keen interest to ecologists. Here, I provide a framework for understanding how shortfalls in micronutrients like iodine, copper, and zinc can regulate individual fitness, abundance, and ecosystem function. With a special focus on sodium, I show how simple experiments manipulating biogeochemistry can reveal why many of the variables that ecologists study vary so dramatically from place to place. I conclude with a discussion of how the Anthropocene's changing temperature, precipitation, and atmospheric CO2 levels are contributing to nutrient dilution (decreases in the nutrient quality at the base of food webs).
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Affiliation(s)
- Michael Kaspari
- Geographical Ecology Group, Department of Biology, University of Oklahoma, Norman, Oklahoma 73019, USA
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17
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Kharouba HM, Yang LH. Disentangling the direct, indirect, and combined effects of experimental warming on a plant–insect herbivore interaction. Ecosphere 2021. [DOI: 10.1002/ecs2.3778] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- Heather M. Kharouba
- Center for Population Biology University of California Davis California 95616 USA
- Department of Biology University of Ottawa Ottawa Ontario K1N 9B4 Canada
| | - Louie H. Yang
- Department of Entomology and Nematology University of California Davis California 95616 USA
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18
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Abstract
Phosphorus (P) is essential for life. As the fifth-most-abundant element in living cells, P is required for the synthesis of an array of biological molecules including (d)NTPs, nucleic acids, and membranes. Organisms typically acquire environmental P as inorganic phosphate (Pi). While essential for growth and viability, excess intracellular Pi is toxic for both bacteria and eukaryotes. Using the bacterium Salmonella enterica serovar Typhimurium as a model, we establish that Pi cytotoxicity is manifested following its assimilation into adenosine triphosphate (ATP), which acts as a chelating agent for Mg2+ and other cations. Our findings identify physiological processes disrupted by excessive Pi and how bacteria tune P assimilation to cytoplasmic Mg2+ levels. Phosphorus (P) is an essential component of core biological molecules. In bacteria, P is acquired mainly as inorganic orthophosphate (Pi) and assimilated into adenosine triphosphate (ATP) in the cytoplasm. Although P is essential, excess cytosolic Pi hinders growth. We now report that bacteria limit Pi uptake to avoid disruption of Mg2+-dependent processes that result, in part, from Mg2+ chelation by ATP. We establish that the MgtC protein inhibits uptake of the ATP precursor Pi when Salmonella enterica serovar Typhimurium experiences cytoplasmic Mg2+ starvation. This response prevents ATP accumulation and overproduction of ribosomal RNA that together ultimately hinder bacterial growth and result in loss of viability. Even when cytoplasmic Mg2+ is not limiting, excessive Pi uptake increases ATP synthesis, depletes free cytoplasmic Mg2+, inhibits protein synthesis, and hinders growth. Our results provide a framework to understand the molecular basis for Pi toxicity. Furthermore, they suggest a regulatory logic that governs P assimilation based on its intimate connection to cytoplasmic Mg2+ homeostasis.
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19
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Olubi O, Felix-Minnaar JV, Jideani VA. Physicochemical, Mineral and Sensory Characteristics of Instant Citrullus lanatus mucosospermus (Egusi) Soup. Foods 2021; 10:foods10081817. [PMID: 34441594 PMCID: PMC8391701 DOI: 10.3390/foods10081817] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 07/14/2021] [Accepted: 07/16/2021] [Indexed: 11/24/2022] Open
Abstract
Defatted egusi flour offers a food option high in protein and essential micronutrients. An instant processing method was adopted in a ready-to-eat instant soup using egusi grit, hydrocolloid, and defatted flour. A D-optimal quadratic mixture model was used to study the effect of the independent variables (grit, flour, and hydrocolloid) qualities. The quadratic model was adequate to navigate the design space for taste and appearance. The numerical optimization for appearance and taste of instant soup (IES) was used to obtain the optimal soup mix of 10 g of hydrocolloid, 57.2 of defatted flour and 17 g of grits. Sixteen trace and five major mineral elements were found in the egusi soup, with a high concentration of phosphorus (1220.4, 1326.2 and 1277.9 mg/100 g), potassium (1220.4, 1326.2 and 1277.9 mg/100 g), magnesium (822.2, 905.3 and 863.70 mg/100 g), calcium (172.3, 190.9 and 183.4 mg/100 g) and iron (53.7, 57.5 and 29.5 mg/100 g), and for instant egusi soups from boiled egusi grit (IESBG), instant egusi grit from spherified grit (IESSG) and instant egusi grit from extruded grit (IESEG), respectively. The amino acid profile of instant egusi soup offers all essential amino acids necessary to nourish the body. Phosphorus content was significantly (p ≤ 0.05) high across the three soups: 1742, 1836 and 1838 mg/100 g for IESBG, IESSG, and IESEG, respectively; IESSG and IESEG were significantly (p ≤ 0.05) higher in minerals when compared with IESBG. Instant egusi soup differed significantly (p ≤ 0.05) in lightness (L*), while the redness (a*) and yellowness (b*) did not vary significantly.
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20
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Canning AD, Joy MK, Death RG. Nutrient criteria to achieve New Zealand's riverine macroinvertebrate targets. PeerJ 2021; 9:e11556. [PMID: 34131528 PMCID: PMC8174153 DOI: 10.7717/peerj.11556] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 05/12/2021] [Indexed: 11/20/2022] Open
Abstract
Waterways worldwide are experiencing nutrient enrichment from population growth and intensive agriculture, and New Zealand is part of this global trend. Increasing fertilizer in New Zealand and intensive agriculture have driven substantial water quality declines over recent decades. A recent national directive has set environmental managers a range of riverine ecological targets, including three macroinvertebrate indicators, and requires nutrient criteria be set to support their achievement. To support these national aspirations, we use the minimization-of-mismatch analysis to derive potential nutrient criteria. Given that nutrient and macroinvertebrate monitoring often does not occur at the same sites, we compared nutrient criteria derived at sites where macroinvertebrates and nutrients are monitored concurrently with nutrient criteria derived at all macroinvertebrate monitoring sites and using modelled nutrients. To support all three macroinvertebrate targets, we suggest that suitable nutrient criteria would set median dissolved inorganic nitrogen concentrations at ~0.6 mg/L and median dissolved reactive phosphorus concentrations at ~0.02 mg/L. We recognize that deriving site-specific nutrient criteria requires the balancing of multiple values and consideration of multiple targets, and anticipate that criteria derived here will help and support these environmental goals.
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Affiliation(s)
- Adam D Canning
- Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Townsville, Queensland, Australia
| | - Michael K Joy
- School of Government, Victoria University of Wellington, Wellington, New Zealand
| | - Russell G Death
- School of Agriculture and Environment, Massey University, Palmerston North, New Zealand
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21
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Barneche DR, Hulatt CJ, Dossena M, Padfield D, Woodward G, Trimmer M, Yvon-Durocher G. Warming impairs trophic transfer efficiency in a long-term field experiment. Nature 2021; 592:76-79. [PMID: 33647927 DOI: 10.1038/s41586-021-03352-2] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 02/11/2021] [Indexed: 11/09/2022]
Abstract
In ecosystems, the efficiency of energy transfer from resources to consumers determines the biomass structure of food webs. As a general rule, about 10% of the energy produced in one trophic level makes it up to the next1-3. Recent theory suggests that this energy transfer could be further constrained if rising temperatures increase metabolic growth costs4, although experimental confirmation in whole ecosystems is lacking. Here we quantify nitrogen transfer efficiency-a proxy for overall energy transfer-in freshwater plankton in artificial ponds that have been exposed to seven years of experimental warming. We provide direct experimental evidence that, relative to ambient conditions, 4 °C of warming can decrease trophic transfer efficiency by up to 56%. In addition, the biomass of both phytoplankton and zooplankton was lower in the warmed ponds, which indicates major shifts in energy uptake, transformation and transfer5,6. These findings reconcile observed warming-driven changes in individual-level growth costs and in carbon-use efficiency across diverse taxa4,7-10 with increases in the ratio of total respiration to gross primary production at the ecosystem level11-13. Our results imply that an increasing proportion of the carbon fixed by photosynthesis will be lost to the atmosphere as the planet warms, impairing energy flux through food chains, which will have negative implications for larger consumers and for the functioning of entire ecosystems.
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Affiliation(s)
- Diego R Barneche
- Australian Institute of Marine Science, Indian Ocean Marine Research Centre, Crawley, Western Australia, Australia.,Oceans Institute, The University of Western Australia, Crawley, Western Australia, Australia.,Environment and Sustainability Institute, University of Exeter, Penryn, UK
| | - Chris J Hulatt
- School of Biological and Chemical Sciences, Queen Mary University of London, London, UK.,Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway
| | - Matteo Dossena
- School of Biological and Chemical Sciences, Queen Mary University of London, London, UK
| | - Daniel Padfield
- Environment and Sustainability Institute, University of Exeter, Penryn, UK
| | - Guy Woodward
- Department of Life Sciences, Imperial College London, Silwood Park, Ascot, UK
| | - Mark Trimmer
- School of Biological and Chemical Sciences, Queen Mary University of London, London, UK.
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22
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Kaspari M. The seventh macronutrient: how sodium shortfall ramifies through populations, food webs and ecosystems. Ecol Lett 2020; 23:1153-1168. [PMID: 32380580 DOI: 10.1111/ele.13517] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 01/28/2020] [Accepted: 03/17/2020] [Indexed: 11/27/2022]
Abstract
Of the 25 elements required to build most organisms, sodium has a unique set of characteristics that ramify through terrestrial ecology. In plants, sodium is found in low concentrations and has little metabolic function; in plant consumers, particularly animals, sodium is essential to running costly Na-K ATPases. Here I synthesise a diverse literature from physiology, agronomy and ecology, towards identifying sodium's place as the '7th macronutrient', one whose shortfall targets two trophic levels - herbivores and detritivores. I propose that sodium also plays a central, though unheralded role in herbivore digestion, via its importance to maintaining microbiomes and denaturing tannins. I highlight how sodium availability is a key determinant of consumer abundance and the geography of herbivory and detritivory. And I propose a re-appraisal of the assumption that, because sodium is metabolically unimportant to most plants, it is of little use. Instead, I suggest that sodium's critical role in limiting herbivore performance makes it a commodity used by plants to manipulate their herbivores and mutualists, and by consumers like bison and elephants to generate grazing lawns: dependable sources of sodium.
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Affiliation(s)
- Michael Kaspari
- Geographical Ecology Group, Department of Biology, University of Oklahoma, Norman, OK, USA
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23
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Jeyasingh PD, Goos JM, Lind PR, Roy Chowdhury P, Sherman RE. Phosphorus supply shifts the quotas of multiple elements in algae and
Daphnia
: ionomic basis of stoichiometric constraints. Ecol Lett 2020; 23:1064-1072. [DOI: 10.1111/ele.13505] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 01/20/2020] [Accepted: 03/11/2020] [Indexed: 12/22/2022]
Affiliation(s)
| | - Jared M. Goos
- Department of Integrative Biology Oklahoma State University Stillwater OK USA
- BioFire Diagnostics Salt Lake City UT USA
| | - Patrick R. Lind
- Department of Integrative Biology Oklahoma State University Stillwater OK USA
- Department of Biological Sciences University of Arkansas Fayetteville AR USA
| | - Priyanka Roy Chowdhury
- Department of Integrative Biology Oklahoma State University Stillwater OK USA
- Department of Biology Keene State College Keene NH USA
| | - Ryan E. Sherman
- Department of Integrative Biology Oklahoma State University Stillwater OK USA
- Biology Program MacMurray College Jacksonville IL USA
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24
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Rizzuto M, Leroux SJ, Vander Wal E, Wiersma YF, Heckford TR, Balluffi‐Fry J. Patterns and potential drivers of intraspecific variability in the body C, N, and P composition of a terrestrial consumer, the snowshoe hare ( Lepus americanus). Ecol Evol 2019; 9:14453-14464. [PMID: 31938532 PMCID: PMC6953652 DOI: 10.1002/ece3.5880] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 10/04/2019] [Accepted: 11/03/2019] [Indexed: 11/09/2022] Open
Abstract
Intraspecific variability in ecological traits is widespread in nature. Recent evidence, mostly from aquatic ecosystems, shows individuals differing at the most fundamental level, that of their chemical composition. Age, sex, or body size and condition may be key drivers of intraspecific variability in the body concentrations of carbon (C), nitrogen (N), and phosphorus (P). However, we still have a rudimentary understanding of the patterns and drivers of intraspecific variability in chemical composition of terrestrial consumers, particularly vertebrates.Here, we investigate the elemental composition of the snowshoe hare Lepus americanus. Based on snowshoe hare ecology, we predicted older, larger individuals to have higher concentration of N or P and lower C content compared with younger, smaller individuals. We also predicted females to have higher concentrations of N, P, and lower C than males due to the higher reproductive costs they incur. Finally, we predicted that individuals in better body condition would have higher N and P than those in worse condition, irrespective of age.We obtained C, N, and P concentrations and ratios from a sample of 50 snowshoe hares. We then used general linear models to test our predictions on the relationship between age, sex, body size or condition and stoichiometric variability in hares.We found considerable variation in C, N, and P stoichiometry within our sample. Contrary to our predictions, we found weak evidence of N content decreasing with age. As well, sex appeared to have no relationship with hare body elemental composition. Conversely, as expected, P content increased with body size and condition. Finally, we found no relationship between variability in C content and any of our predictor variables.Snowshoe hare stoichiometry does not appear to vary with individual age, sex, body size, or condition. However, the weak relationship between body N concentration and age may suggest varying nutritional requirements of individuals at different ages. Conversely, body P's weak relationship to body size and condition appears in line with this limiting element's importance in terrestrial ecosystems. Snowshoe hares are keystone herbivores in the boreal forest of North America, and the substantial stoichiometric variability we find in our sample could have important implications for nutrient dynamics, in both boreal and adjacent ecosystems.
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Affiliation(s)
- Matteo Rizzuto
- Department of BiologyMemorial University of NewfoundlandSt. John'sNFCanada
| | - Shawn J. Leroux
- Department of BiologyMemorial University of NewfoundlandSt. John'sNFCanada
| | - Eric Vander Wal
- Department of BiologyMemorial University of NewfoundlandSt. John'sNFCanada
| | - Yolanda F. Wiersma
- Department of BiologyMemorial University of NewfoundlandSt. John'sNFCanada
| | - Travis R. Heckford
- Department of BiologyMemorial University of NewfoundlandSt. John'sNFCanada
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25
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Halvorson HM, Fuller CL, Entrekin SA, Scott JT, Evans-White MA. Interspecific homeostatic regulation and growth across aquatic invertebrate detritivores: a test of ecological stoichiometry theory. Oecologia 2019; 190:229-242. [PMID: 31062165 DOI: 10.1007/s00442-019-04409-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 04/29/2019] [Indexed: 01/12/2023]
Abstract
Across resource quality gradients, primary consumers must regulate homeostasis and release of nutrients to optimize growth and fitness. Based primarily on internal body composition, the ecological stoichiometry theory (EST) offers a framework to generalize interspecific patterns of these responses, yet the predictions and underlying assumptions of EST remain poorly tested across many species. We used controlled laboratory feeding experiments to measure homeostasis, nutrient release, and growth across seven field-collected aquatic invertebrate detritivore taxa fed wide resource carbon:nitrogen (C:N) and carbon:phosphorus (C:P) gradients. We found that most invertebrates exhibited strict stoichiometric homeostasis (average 1/H = - 0.018 and 0.026 for C:N and C:P, respectively), supporting assumptions of EST. However, the stoichiometry of new tissue production during growth intervals (growth stoichiometry) deviated - 30 to + 54% and - 145 to + 74% from initial body C:N and C:P, respectively, and across species, growth stoichiometry was not correlated with initial body stoichiometry. Notably, smaller non- and hemimetabolous invertebrates exhibited low, decreasing growth C:N and C:P, whereas larger holometabolous invertebrates exhibited high, often increasing growth C:N and C:P. Despite predictions of EST, interspecific sensitivity of egestion stoichiometry and growth rates to the resource gradient were weakly related to internal body composition across species. While the sensitivity of these patterns differed across taxa, such differences carried a weak phylogenetic signal and were not well predicted by EST. Our findings suggest that traits beyond internal body composition, such as feeding behavior, selective assimilation, and ontogeny, are needed to generalize interspecific patterns in consumer growth and nutrient release across resource quality gradients.
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Affiliation(s)
- Halvor M Halvorson
- School of Biological, Environmental, and Earth Sciences, University of Southern Mississippi, Hattiesburg, MS, USA.
| | | | - Sally A Entrekin
- Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - J Thad Scott
- Department of Biology, Baylor University, Waco, TX, USA
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26
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Liefer JD, Garg A, Fyfe MH, Irwin AJ, Benner I, Brown CM, Follows MJ, Omta AW, Finkel ZV. The Macromolecular Basis of Phytoplankton C:N:P Under Nitrogen Starvation. Front Microbiol 2019; 10:763. [PMID: 31057501 PMCID: PMC6479212 DOI: 10.3389/fmicb.2019.00763] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Accepted: 03/26/2019] [Indexed: 12/21/2022] Open
Abstract
Biogeochemical cycles in the ocean are strongly affected by the elemental stoichiometry (C:N:P) of phytoplankton, which largely reflects their macromolecular content. A greater understanding of how this macromolecular content varies among phytoplankton taxa and with resource limitation may strengthen physiological and biogeochemical modeling efforts. We determined the macromolecular basis (protein, carbohydrate, lipid, nucleic acids, pigments) of C:N:P in diatoms and prasinophytes, two globally important phytoplankton taxa, in response to N starvation. Despite their differing cell sizes and evolutionary histories, the relative decline in protein during N starvation was similar in all four species studied and largely determined variations in N content. The accumulation of carbohydrate and lipid dominated the increase in C content and C:N in all species during N starvation, but these processes differed greatly between diatoms and prasinophytes. Diatoms displayed far greater accumulation of carbohydrate with N starvation, possibly due to their greater cell size and storage capacity, resulting in larger increases in C content and C:N. In contrast, the prasinophytes had smaller increases in C and C:N that were largely driven by lipid accumulation. Variation in C:P and N:P was species-specific and mainly determined by residual P pools, which likely represent intracellular storage of inorganic P and accounted for the majority of cellular P in all species throughout N starvation. Our findings indicate that carbohydrate and lipid accumulation may play a key role in determining the environmental and taxonomic variability in phytoplankton C:N. This quantitative assessment of macromolecular and elemental content spanning several marine phytoplankton species can be used to develop physiological models for ecological and biogeochemical applications.
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Affiliation(s)
- Justin D. Liefer
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
| | - Aneri Garg
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
| | - Matthew H. Fyfe
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
| | - Andrew J. Irwin
- Department of Mathematics and Computer Science, Mount Allison University, Sackville, NB, Canada
| | - Ina Benner
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
| | - Christopher M. Brown
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
| | - Michael J. Follows
- Department of Earth, Atmospheric and Planetary Science, Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Anne Willem Omta
- Department of Earth, Atmospheric and Planetary Science, Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Zoe V. Finkel
- Department of Geography and Environment, Mount Allison University, Sackville, NB, Canada
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27
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Moody EK, Lujan NK, Roach KA, Winemiller KO. Threshold elemental ratios and the temperature dependence of herbivory in fishes. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13301] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Eric K. Moody
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames Iowa
| | - Nathan K. Lujan
- Department of Biological Sciences University of Toronto Scarborough Toronto Ontario Canada
| | - Katherine A. Roach
- Department of Wildlife and Fisheries Sciences Program of Ecology and Evolutionary Biology Texas A&M University College Station Texas
| | - Kirk O. Winemiller
- Department of Wildlife and Fisheries Sciences Program of Ecology and Evolutionary Biology Texas A&M University College Station Texas
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28
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Rudman SM, Goos JM, Burant JB, Brix KV, Gibbons TC, Brauner CJ, Jeyasingh PD. Ionome and elemental transport kinetics shaped by parallel evolution in threespine stickleback. Ecol Lett 2019; 22:645-653. [DOI: 10.1111/ele.13225] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 12/22/2018] [Accepted: 01/05/2019] [Indexed: 12/24/2022]
Affiliation(s)
- Seth M. Rudman
- Department of Biology University of Pennsylvania Philadelphia PA USA
| | - Jared M. Goos
- Department of Integrative Biology Oklahoma State University Stillwater OK USA
| | - Joseph B. Burant
- Department of Integrative Biology University of Guelph Guelph ON Canada
| | - Kevin V. Brix
- Department of Marine Biology and Ecology University of Miami RSMAS Miami FL USA
| | - Taylor C. Gibbons
- Department of Zoology University of British Columbia Vancouver BC Canada
| | - Colin J. Brauner
- Department of Zoology University of British Columbia Vancouver BC Canada
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29
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Harrison JF. Approaches for testing hypotheses for the hypometric scaling of aerobic metabolic rate in animals. Am J Physiol Regul Integr Comp Physiol 2018; 315:R879-R894. [DOI: 10.1152/ajpregu.00165.2018] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Hypometric scaling of aerobic metabolism [larger organisms have lower mass-specific metabolic rates (MR/g)] is nearly universal for interspecific comparisons among animals, yet we lack an agreed upon explanation for this pattern. If physiological constraints on the function of larger animals occur and limit MR/g, these should be observable as direct constraints on animals of extant species and/or as evolved responses to compensate for the proposed constraint. There is evidence for direct constraints and compensatory responses to O2 supply constraint in skin-breathing animals, but not in vertebrates with gas-exchange organs. The duration of food retention in the gut is longer for larger birds and mammals, consistent with a direct constraint on nutrient uptake across the gut wall, but there is little evidence for evolving compensatory responses to gut transport constraints in larger animals. Larger placental mammals (but not marsupials or birds) show evidence of greater challenges with heat dissipation, but there is little evidence for compensatory adaptations to enhance heat loss in larger endotherms, suggesting that metabolic rate (MR) more generally balances heat loss for thermoregulation in endotherms. Size-dependent patterns in many molecular, physiological, and morphological properties are consistent with size-dependent natural selection, such as stronger selection for neurolocomotor performance and growth rate in smaller animals and stronger selection for safety and longevity in larger animals. Hypometric scaling of MR very likely arises from different mechanisms in different taxa and conditions, consistent with the diversity of scaling slopes for MR.
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Affiliation(s)
- Jon F. Harrison
- School of Life Sciences, Arizona State University, Tempe, Arizona
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30
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Affiliation(s)
- Rachel E. Paseka
- Graduate Program in Ecology and Evolution, Dept of Ecology, Evolution and Natural Resources, Rutgers, The State Univ. of New Jersey, Environmental & Natural Resources Building, 14 College Farm Road; New Brunswick NJ 08901 USA
| | - Rita L. Grunberg
- Graduate Program in Ecology and Evolution, Dept of Ecology, Evolution and Natural Resources, Rutgers, The State Univ. of New Jersey, Environmental & Natural Resources Building, 14 College Farm Road; New Brunswick NJ 08901 USA
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31
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Pontes MH, Groisman EA. Protein synthesis controls phosphate homeostasis. Genes Dev 2018; 32:79-92. [PMID: 29437726 PMCID: PMC5828397 DOI: 10.1101/gad.309245.117] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Accepted: 12/27/2017] [Indexed: 12/22/2022]
Abstract
In this study, Pontes et al. show that impaired protein synthesis alone triggers a Pi starvation response even when Pi is plentiful in the extracellular milieu in yeast and bacteria. Their findings identify a regulatory connection between protein synthesis and Pi homeostasis that is widespread in nature. Phosphorus is an essential element assimilated largely as orthophosphate (Pi). Cells respond to Pi starvation by importing Pi from their surroundings. We now report that impaired protein synthesis alone triggers a Pi starvation response even when Pi is plentiful in the extracellular milieu. In the bacterium Salmonella enterica serovar Typhimurium, this response entails phosphorylation of the regulatory protein PhoB and transcription of PhoB-dependent Pi transporter genes and is eliminated upon stimulation of adenosine triphosphate (ATP) hydrolysis. When protein synthesis is impaired due to low cytoplasmic magnesium (Mg2+), Salmonella triggers the Pi starvation response because ribosomes are destabilized, which reduces ATP consumption and thus free cytoplasmic Pi. This response is transient because low cytoplasmic Mg2+ promotes an uptake in Mg2+ and a decrease in ATP levels, which stabilizes ribosomes, resulting in ATP consumption and Pi increase, thus ending the response. Notably, pharmacological inhibition of protein synthesis also elicited a Pi starvation response in the bacterium Escherichia coli and the yeast Saccharomyces cerevisiae. Our findings identify a regulatory connection between protein synthesis and Pi homeostasis that is widespread in nature.
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Affiliation(s)
- Mauricio H Pontes
- Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, Connecticut 06536, USA.,Yale Microbial Sciences Institute, West Haven, Connecticut 06516, USA
| | - Eduardo A Groisman
- Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, Connecticut 06536, USA.,Yale Microbial Sciences Institute, West Haven, Connecticut 06516, USA
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32
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Harrison JF. Do Performance-Safety Tradeoffs Cause Hypometric Metabolic Scaling in Animals? Trends Ecol Evol 2017; 32:653-664. [PMID: 28760361 DOI: 10.1016/j.tree.2017.05.008] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Revised: 05/25/2017] [Accepted: 05/30/2017] [Indexed: 10/19/2022]
Abstract
Hypometric scaling of aerobic metabolism in animals has been widely attributed to constraints on oxygen (O2) supply in larger animals, but recent findings demonstrate that O2 supply balances with need regardless of size. Larger animals also do not exhibit evidence of compensation for O2 supply limitation. Because declining metabolic rates (MRs) are tightly linked to fitness, this provides significant evidence against the hypothesis that constraints on supply drive hypometric scaling. As an alternative, ATP demand might decline in larger animals because of performance-safety tradeoffs. Larger animals, which typically reproduce later, exhibit risk-reducing strategies that lower MR. Conversely, smaller animals are more strongly selected for growth and costly neurolocomotory performance, elevating metabolism.
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Affiliation(s)
- Jon F Harrison
- School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.
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33
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Kaspari M, Bujan J, Weiser MD, Ning D, Michaletz ST, Zhili H, Enquist BJ, Waide RB, Zhou J, Turner BL, Wright SJ. Biogeochemistry drives diversity in the prokaryotes, fungi, and invertebrates of a Panama forest. Ecology 2017; 98:2019-2028. [PMID: 28500769 DOI: 10.1002/ecy.1895] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Revised: 04/26/2017] [Accepted: 05/05/2017] [Indexed: 01/13/2023]
Abstract
Humans are both fertilizing the world and depleting its soils, decreasing the diversity of aquatic ecosystems and terrestrial plants in the process. We know less about how nutrients shape the abundance and diversity of the prokaryotes, fungi, and invertebrates of Earth's soils. Here we explore this question in the soils of a Panama forest subject to a 13-yr fertilization with factorial combinations of nitrogen (N), phosphorus (P), and potassium (K) and a separate micronutrient cocktail. We contrast three hypotheses linking biogeochemistry to abundance and diversity. Consistent with the Stress Hypothesis, adding N suppressed the abundance of invertebrates and the richness of all three groups of organisms by ca. 1 SD or more below controls. Nitrogen addition plots were 0.8 pH units more acidic with 18% more exchangeable aluminum, which is toxic to both prokaryotes and eukaryotes. These stress effects were frequently reversed, however, when N was added with P (for prokaryotes and invertebrates) and with added K (for fungi). Consistent with the Abundance Hypothesis, adding P generally increased prokaryote and invertebrate diversity, and adding K enhanced invertebrate diversity. Also consistent with the Abundance Hypothesis, increases in invertebrate abundance generated increases in richness. We found little evidence for the Competition Hypothesis: that single nutrients suppressed diversity by favoring a subset of high nutrient specialists, and that nutrient combinations suppressed diversity even more. Instead, combinations of nutrients, and especially the cation/micronutrient treatment, yielded the largest increases in richness in the two eukaryote groups. In sum, changes in soil biogeochemistry revealed a diversity of responses among the three dominant soil groups, positive synergies among nutrients, and-in contrast with terrestrial plants-the frequent enhancement of soil biodiversity.
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Affiliation(s)
- Michael Kaspari
- Department of Biology, Graduate Program in Ecology and Evolutionary Biology, University of Oklahoma, Norman, Oklahoma, 73019, USA.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
| | - Jelena Bujan
- Department of Biology, Graduate Program in Ecology and Evolutionary Biology, University of Oklahoma, Norman, Oklahoma, 73019, USA.,Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
| | - Michael D Weiser
- Department of Biology, Graduate Program in Ecology and Evolutionary Biology, University of Oklahoma, Norman, Oklahoma, 73019, USA
| | - Daliang Ning
- Department of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, 73019, USA
| | - Sean T Michaletz
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, 85721, USA.,Earth and Environmental Sciences Division, Los Alamos National Laboratory, MS J495, Los Alamos, New Mexico, 87545, USA
| | - He Zhili
- Department of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, 73019, USA
| | - Brian J Enquist
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, 85721, USA.,Santa Fe Institute, Santa Fe, New Mexico, 87501, USA
| | - Robert B Waide
- Department of Biology, University of New Mexico, Albuquerque, New Mexico, 87131, USA.,LTER Network Office, University of New Mexico, Albuquerque, New Mexico, 87131, USA
| | - Jizhong Zhou
- Department of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, 73019, USA.,CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancon, Panama
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34
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Fu R, Gong J. Single Cell Analysis Linking Ribosomal (r)DNA and rRNA Copy Numbers to Cell Size and Growth Rate Provides Insights into Molecular Protistan Ecology. J Eukaryot Microbiol 2017; 64:885-896. [PMID: 28499076 PMCID: PMC5697653 DOI: 10.1111/jeu.12425] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 04/03/2017] [Accepted: 05/02/2017] [Indexed: 11/30/2022]
Abstract
Ribosomal (r)RNA and rDNA have been golden molecular markers in microbial ecology. However, it remains poorly understood how ribotype copy number (CN)‐based characteristics are linked with diversity, abundance, and activity of protist populations and communities observed at organismal levels. Here, we applied a single‐cell approach to quantify ribotype CNs in two ciliate species reared at different temperatures. We found that in actively growing cells, the per‐cell rDNA and rRNA CNs scaled with cell volume (CV) to 0.44 and 0.58 powers, respectively. The modeled rDNA and rRNA concentrations thus appear to be much higher in smaller than in larger cells. The observed rRNA:rDNA ratio scaled with CV0.14. The maximum growth rate could be well predicted by a combination of per‐cell ribotype CN and temperature. Our empirical data and modeling on single‐cell ribotype scaling are in agreement with both the metabolic theory of ecology and the growth rate hypothesis, providing a quantitative framework for linking cellular rDNA and rRNA CNs with body size, growth (activity), and biomass stoichiometry. This study also demonstrates that the expression rate of rRNA genes is constrained by cell size, and favors biomass rather than abundance‐based interpretation of quantitative ribotype data in population and community ecology of protists.
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Affiliation(s)
- Rao Fu
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jun Gong
- Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China.,University of Chinese Academy of Sciences, Beijing, 100049, China.,Laboratory of Microbial Ecology and Matter Cycles, School of Marine Sciences, Sun Yat-Sen University, Zhuhai, 519082, China
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35
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Massol F, Altermatt F, Gounand I, Gravel D, Leibold MA, Mouquet N. How life-history traits affect ecosystem properties: effects of dispersal in meta-ecosystems. OIKOS 2017. [DOI: 10.1111/oik.03893] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- François Massol
- CNRS, Univ. de Lille, UMR 8198 Evo-Eco-Paleo, SPICI group; FR-59000 Lille France
| | - Florian Altermatt
- Dept of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology; Dübendorf, Switzerland, and: Dept of Evolutionary Biology and Environmental Studies, Univ. of Zürich; Zürich Switzerland
| | - Isabelle Gounand
- Dept of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology; Dübendorf, Switzerland, and: Dept of Evolutionary Biology and Environmental Studies, Univ. of Zürich; Zürich Switzerland
| | - Dominique Gravel
- Dépt de biologie; Univ. de Sherbrooke, Sherbrooke, Canada, and: Québec Center for Biodiversity Science; Quebec Canada
| | - Mathew A. Leibold
- Dept of Integrative Biology; Univ. of Texas at Austin; Austin TX USA
| | - Nicolas Mouquet
- 7 UMR MARBEC (MARine Biodiversity, Exploitation and Conservation); Univ. de Montpellier; Montpellier France
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36
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Atkinson CL, Capps KA, Rugenski AT, Vanni MJ. Consumer-driven nutrient dynamics in freshwater ecosystems: from individuals to ecosystems. Biol Rev Camb Philos Soc 2016; 92:2003-2023. [DOI: 10.1111/brv.12318] [Citation(s) in RCA: 124] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Revised: 11/14/2016] [Accepted: 11/18/2016] [Indexed: 11/27/2022]
Affiliation(s)
- Carla L. Atkinson
- Department of Biological Sciences; University of Alabama; Tuscaloosa AL 35487 U.S.A
| | - Krista A. Capps
- Odum School of Ecology; University of Georgia; Athens GA 30602 U.S.A
- Savannah River Ecology Laboratory; University of Georgia; Aiken SC 29808 U.S.A
| | - Amanda T. Rugenski
- Department of Ecology and Evolutionary Biology; Cornell University; Ithaca NY 14853 U.S.A
| | - Michael J. Vanni
- Department of Biology and Graduate Program in Ecology Evolution and Environmental Biology; Miami University; Oxford OH 45056 U.S.A
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37
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Vanni MJ, McIntyre PB. Predicting nutrient excretion of aquatic animals with metabolic ecology and ecological stoichiometry: a global synthesis. Ecology 2016; 97:3460-3471. [DOI: 10.1002/ecy.1582] [Citation(s) in RCA: 94] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/07/2016] [Revised: 08/03/2016] [Accepted: 08/23/2016] [Indexed: 11/10/2022]
Affiliation(s)
| | - Peter B. McIntyre
- Center for Limnology University of Wisconsin Madison Wisconsin 53706 USA
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38
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El-Sabaawi RW, Warbanski ML, Rudman SM, Hovel R, Matthews B. Investment in boney defensive traits alters organismal stoichiometry and excretion in fish. Oecologia 2016; 181:1209-20. [PMID: 27075487 DOI: 10.1007/s00442-016-3599-0] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2015] [Accepted: 02/28/2016] [Indexed: 01/29/2023]
Abstract
Understanding how trait diversification alters ecosystem processes is an important goal for ecological and evolutionary studies. Ecological stoichiometry provides a framework for predicting how traits affect ecosystem function. The growth rate hypothesis of ecological stoichiometry links growth and phosphorus (P) body composition in taxa where nucleic acids are a significant pool of body P. In vertebrates, however, most of the P is bound within bone, and organisms with boney structures can vary in terms of the relative contributions of bones to body composition. Threespine stickleback populations have substantial variation in boney armour plating. Shaped by natural selection, this variation provides a model system to study the links between evolution of bone content, elemental body composition, and P excretion. We measure carbon:nitrogen:P body composition from stickleback populations that vary in armour phenotype. We develop a mechanistic mass-balance model to explore factors affecting P excretion, and measure P excretion from two populations with contrasting armour phenotypes. Completely armoured morphs have higher body %P but excrete more P per unit body mass than other morphs. The model suggests that such differences are driven by phenotypic differences in P intake as well as body %P composition. Our results show that while investment in boney traits alters the elemental composition of vertebrate bodies, excretion rates depend on how acquisition and assimilation traits covary with boney trait investment. These results also provide a stoichiometric hypothesis to explain the repeated loss of boney armour in threespine sticklebacks upon colonizing freshwater ecosystems.
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Affiliation(s)
- Rana W El-Sabaawi
- Department of Biology, University of Victoria, P.O. Box 1700, Station CSC, Victoria, BC, V8W 2Y2, Canada.
| | - Misha L Warbanski
- Department of Biology, University of Victoria, P.O. Box 1700, Station CSC, Victoria, BC, V8W 2Y2, Canada
| | - Seth M Rudman
- Department of Zoology, University of British Columbia, 4200-6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada
| | - Rachel Hovel
- School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA
| | - Blake Matthews
- Department of Aquatic Ecology, Center for Ecology, Evolution and Biogeochemistry, Eawag, Kastanienbaum, 6047, Switzerland
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39
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Kaspari M, Clay NA, Lucas J, Revzen S, Kay A, Yanoviak SP. Thermal adaptation and phosphorus shape thermal performance in an assemblage of rainforest ants. Ecology 2016; 97:1038-47. [DOI: 10.1890/15-1225.1] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Michael Kaspari
- Graduate Program in Ecology and Evolution Department of Biology University of Oklahoma Norman OK 73019 USA
- Smithsonian Tropical Research Institute Balboa Republic of Panama
| | - Natalie A. Clay
- Graduate Program in Ecology and Evolution Department of Biology University of Oklahoma Norman OK 73019 USA
- Smithsonian Tropical Research Institute Balboa Republic of Panama
| | - Jane Lucas
- Graduate Program in Ecology and Evolution Department of Biology University of Oklahoma Norman OK 73019 USA
- Smithsonian Tropical Research Institute Balboa Republic of Panama
| | - Shai Revzen
- Department of Electrical Engineering and Computer Science University of Michigan Ann Arbor MI 48109 USA
| | - Adam Kay
- Department of Biology University of St. Thomas St. Paul MN 55105 USA
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40
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Guantes R, Díaz-Colunga J, Iborra FJ. Mitochondria and the non-genetic origins of cell-to-cell variability: More is different. Bioessays 2015; 38:64-76. [PMID: 26660201 DOI: 10.1002/bies.201500082] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Gene expression activity is heterogeneous in a population of isogenic cells. Identifying the molecular basis of this variability will improve our understanding of phenomena like tumor resistance to drugs, virus infection, or cell fate choice. The complexity of the molecular steps and machines involved in transcription and translation could introduce sources of randomness at many levels, but a common constraint to most of these processes is its energy dependence. In eukaryotic cells, most of this energy is provided by mitochondria. A clonal population of cells may show a large variability in the number and functionality of mitochondria. Here, we discuss how differences in the mitochondrial content of each cell contribute to heterogeneity in gene products. Changes in the amount of mitochondria can also entail drastic alterations of a cell's gene expression program, which ultimately leads to phenotypic diversity. Also watch the Video Abstract.
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Affiliation(s)
- Raúl Guantes
- Department of Condensed Matter Physics, Materials Science Institute 'Nicolás Cabrera' and Institute of Condensed Matter Physics (IFIMAC), Universidad Autónoma de Madrid, Campus de Cantoblanco, Madrid, Spain
| | - Juan Díaz-Colunga
- Centro Nacional de Biotecnología, CSIC, Campus de Cantoblanco, Madrid, Spain
| | - Francisco J Iborra
- Centro Nacional de Biotecnología, CSIC, Campus de Cantoblanco, Madrid, Spain
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41
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42
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Ontogenetic variation in the body stoichiometry of two fish species. Oecologia 2015; 179:329-41. [PMID: 25999048 DOI: 10.1007/s00442-015-3349-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2015] [Accepted: 05/10/2015] [Indexed: 10/23/2022]
Abstract
One of the central questions of ecological stoichiometry theory is to what extent animal species maintain constant elemental composition in their bodies. Although several recent studies demonstrate intraspecific variation in animal elemental composition, relatively little is known about ontogenetic changes in vertebrates, especially during early life stages. We studied the intraspecific and interspecific ontogenetic variation in the body stoichiometry of two fish species in two different orders; fathead minnow (Pimephales promelas) and sheepshead minnow (Cyprinodon variegatus), reared under controlled laboratory conditions. During ontogeny, we measured the chemical composition of fish bodies, including carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), and ribonucleic acid (RNA) contents. We found that N and RNA contents were relatively high in early life stages and declined substantially during development. In contrast, body C and C:N ratios were relatively low in embryos, post-embryos and larvae, and increased remarkably thereafter. Concentrations and ratios of some elements (e.g., Ca, P, Ca:P) did not exhibit consistent ontogenetic trends, but fluctuated dynamically between consecutive developmental stages in both species. Specific growth rates correlated significantly with RNA contents in both species. Analyses of the relative importance of different P pools at each developmental stage revealed that RNA was a considerable P pool in post-embryos, while bone-associated P was the dominant body P pool in later stages. Our results suggest that the elemental composition of fish bodies changes considerably during ontogeny. Each ontogenetic stage has its own stoichiometric signature, but the timing, magnitude and direction of ontogenetic changes can vary substantially between taxa.
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43
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Metabolic theory and taxonomic identity predict nutrient recycling in a diverse food web. Proc Natl Acad Sci U S A 2015; 112:E2640-7. [PMID: 25877152 DOI: 10.1073/pnas.1420819112] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Reconciling the degree to which ecological processes are generalizable among taxa and ecosystems, or contingent on the identity of interacting species, remains a critical challenge in ecology. Ecological stoichiometry (EST) and metabolic theory of ecology (MTE) are theoretical approaches used to evaluate how consumers mediate nutrient dynamics and energy flow through ecosystems. Recent theoretical work has explored the utility of these theories, but empirical tests in species-rich ecological communities remain scarce. Here we use an unprecedented dataset collected from fishes and dominant invertebrates (n = 900) in a diverse subtropical coastal marine community (50 families, 72 genera, 102 species; body mass range: 0.04-2,597 g) to test the utility of EST and MTE in predicting excretion rates of nitrogen (E(N)), phosphorus (E(P)), and their ratio (E(NP)). Body mass explained a large amount of the variation in EN and EP but not E(NP). Strong evidence in support of the MTE 3/4 allometric scaling coefficient was found for E(P), and for E(N) only after accounting for variation in excretion rates among taxa. In all cases, including taxonomy in models substantially improved model performance, highlighting the importance of species identity for this ecosystem function. Body nutrient content and trophic position explained little of the variation in E(N), E(P), or E(NP), indicating limited applicability of basic predictors of EST. These results highlight the overriding importance of MTE for predicting nutrient flow through organisms, but emphasize that these relationships still fall short of explaining the unique effects certain species can have on ecological processes.
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Cherchi C, Miljkovic M, Diem M, Gu AZ. nTiO₂ induced changes in intracellular composition and nutrient stoichiometry in primary producer--cyanobacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 512-513:345-352. [PMID: 25636065 DOI: 10.1016/j.scitotenv.2015.01.037] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Revised: 12/31/2014] [Accepted: 01/15/2015] [Indexed: 06/04/2023]
Abstract
The widely and increasing use of nano-titanium dioxide (nTiO2) has led to its release in the environment and concerns of consequent impact on aquatic eco-relevant biota. Previous studies indicated possible physiological changes (i.e., nitrogen storage) induced by nano-titanium dioxide (nTiO2) exposure in algae, which will likely have ecological implications. This study investigated the short- (96 h) and long-term (21 days) ecotoxic impact of environmentally relevant nTiO2 concentrations on the cellular biochemical pools and nutrient stoichiometry in the nitrogen-fixing cyanobacteria Anabaena variabilis. Changes in nutrient element ratios and cellular composition were analyzed using both chemical elemental analysis and Fourier Transform Infrared (FT-IR) spectroscopy. Chemical elemental analysis showed that exposure to nTiO2 at varying dose concentrations and exposure duration led to statistically significant changes in intracellular C:N, C:P and N:P stoichiometries compared with those in the controls. In general, there seemed to be a decreasing trends of cellular C:N ratio and increase in the cellular C:P and N:P ratios with the increasing level of nTiO2 exposure. Further FT-IR analysis results revealed both temporal and dose-dependent change patterns of major macromolecules, including protein, lipids, nucleic acids and carbohydrates, in A. variabilis upon nTiO2 exposure. The relative ratio of amide II, lipids, nucleic acids and carbohydrates to the cellular protein content (quantified as amide I stretch) changed significantly within the initial 96 h of exposure and, both the magnitude of changes and levels of recovery seemed to be nTiO2 dose-dependent. This study, for the first time, demonstrated that the intracellular composition and nutrient stoichiometry changes could be induced by long-term and short-term exposures to nTiO2 to primary producers, which may have ecological implications for interspecies equilibriums and community dynamics in aquatic ecosystems.
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Affiliation(s)
- Carla Cherchi
- Department of Civil & Environmental Engineering, 360 Huntington Avenue, Northeastern University, Boston, MA 02115, USA
| | - Milos Miljkovic
- Department of Chemistry and Chemical Biology, 360 Huntington Avenue, Northeastern University, Boston, MA 02115, USA
| | - Max Diem
- Department of Chemistry and Chemical Biology, 360 Huntington Avenue, Northeastern University, Boston, MA 02115, USA
| | - April Z Gu
- Department of Civil & Environmental Engineering, 360 Huntington Avenue, Northeastern University, Boston, MA 02115, USA.
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Cross WF, Hood JM, Benstead JP, Huryn AD, Nelson D. Interactions between temperature and nutrients across levels of ecological organization. GLOBAL CHANGE BIOLOGY 2015; 21:1025-40. [PMID: 25400273 DOI: 10.1111/gcb.12809] [Citation(s) in RCA: 132] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2014] [Accepted: 10/06/2014] [Indexed: 05/04/2023]
Abstract
Temperature and nutrient availability play key roles in controlling the pathways and rates at which energy and materials move through ecosystems. These factors have also changed dramatically on Earth over the past century as human activities have intensified. Although significant effort has been devoted to understanding the role of temperature and nutrients in isolation, less is known about how these two factors interact to influence ecological processes. Recent advances in ecological stoichiometry and metabolic ecology provide a useful framework for making progress in this area, but conceptual synthesis and review are needed to help catalyze additional research. Here, we examine known and potential interactions between temperature and nutrients from a variety of physiological, community, and ecosystem perspectives. We first review patterns at the level of the individual, focusing on four traits--growth, respiration, body size, and elemental content--that should theoretically govern how temperature and nutrients interact to influence higher levels of biological organization. We next explore the interactive effects of temperature and nutrients on populations, communities, and food webs by synthesizing information related to community size spectra, biomass distributions, and elemental composition. We use metabolic theory to make predictions about how population-level secondary production should respond to interactions between temperature and resource supply, setting up qualitative predictions about the flows of energy and materials through metazoan food webs. Last, we examine how temperature-nutrient interactions influence processes at the whole-ecosystem level, focusing on apparent vs. intrinsic activation energies of ecosystem processes, how to represent temperature-nutrient interactions in ecosystem models, and patterns with respect to nutrient uptake and organic matter decomposition. We conclude that a better understanding of interactions between temperature and nutrients will be critical for developing realistic predictions about ecological responses to multiple, simultaneous drivers of global change, including climate warming and elevated nutrient supply.
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Affiliation(s)
- Wyatt F Cross
- Department of Ecology, Montana State University, Bozeman, MT, 59717, USA
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Individuals scale up carbon flow in ecosystems. Proc Natl Acad Sci U S A 2015; 112:2303-4. [DOI: 10.1073/pnas.1500705112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Benstead JP, Hood JM, Whelan NV, Kendrick MR, Nelson D, Hanninen AF, Demi LM. Coupling of dietary phosphorus and growth across diverse fish taxa: a meta-analysis of experimental aquaculture studies. Ecology 2014. [DOI: 10.1890/13-1859.1] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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49
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Ott D, Digel C, Rall BC, Maraun M, Scheu S, Brose U. Unifying elemental stoichiometry and metabolic theory in predicting species abundances. Ecol Lett 2014; 17:1247-56. [PMID: 25041038 DOI: 10.1111/ele.12330] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2014] [Revised: 04/29/2014] [Accepted: 06/24/2014] [Indexed: 11/28/2022]
Abstract
While metabolic theory predicts variance in population density within communities depending on population average body masses, the ecological stoichiometry concept relates density variation across communities to varying resource stoichiometry. Using a data set including biomass densities of 4959 populations of soil invertebrates across 48 forest sites we combined these two frameworks. We analyzed how the scaling of biomass densities with population-averaged body masses systematically interacts with stoichiometric variables. Simplified analyses employing either only body masses or only resource stoichiometry are highly context sensitive and yield variable and often misleading results. Our findings provide strong evidence that analyses of ecological state variables should integrate allometric and stoichiometric variables to explain deviations from predicted allometric scaling and avoid erroneous conclusions. In consequence, our study provides an important step towards unifying two prominent ecological theories, metabolic theory and ecological stoichiometry.
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Affiliation(s)
- David Ott
- J.F. Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Germany
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Bounedjah O, Desforges B, Wu TD, Pioche-Durieu C, Marco S, Hamon L, Curmi PA, Guerquin-Kern JL, Piétrement O, Pastré D. Free mRNA in excess upon polysome dissociation is a scaffold for protein multimerization to form stress granules. Nucleic Acids Res 2014; 42:8678-91. [PMID: 25013173 PMCID: PMC4117795 DOI: 10.1093/nar/gku582] [Citation(s) in RCA: 126] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2014] [Revised: 06/12/2014] [Accepted: 06/17/2014] [Indexed: 12/12/2022] Open
Abstract
The sequence of events leading to stress granule assembly in stressed cells remains elusive. We show here, using isotope labeling and ion microprobe, that proportionally more RNA than proteins are present in stress granules than in surrounding cytoplasm. We further demonstrate that the delivery of single strand polynucleotides, mRNA and ssDNA, to the cytoplasm can trigger stress granule assembly. On the other hand, increasing the cytoplasmic level of mRNA-binding proteins like YB-1 can directly prevent the aggregation of mRNA by forming isolated mRNPs, as evidenced by atomic force microscopy. Interestingly, we also discovered that enucleated cells do form stress granules, demonstrating that the translocation to the cytoplasm of nuclear prion-like RNA-binding proteins like TIA-1 is dispensable for stress granule assembly. The results lead to an alternative view on stress granule formation based on the following sequence of events: after the massive dissociation of polysomes during stress, mRNA-stabilizing proteins like YB-1 are outnumbered by the burst of nonpolysomal mRNA. mRNA freed of ribosomes thus becomes accessible to mRNA-binding aggregation-prone proteins or misfolded proteins, which induces stress granule formation. Within the frame of this model, the shuttling of nuclear mRNA-stabilizing proteins to the cytoplasm could dissociate stress granules or prevent their assembly.
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Affiliation(s)
- Ouissame Bounedjah
- Institut National de la Santé et de la Recherche Médicale (INSERM), UMR829; Université Evry-Val d'Essonne, Evry 91025, France
| | - Bénédicte Desforges
- Institut National de la Santé et de la Recherche Médicale (INSERM), UMR829; Université Evry-Val d'Essonne, Evry 91025, France
| | - Ting-Di Wu
- Institut Curie, INSERM, U759, 91405 Orsay cedex, France
| | - Catherine Pioche-Durieu
- Centre National de la Recherche Scientifique (CNRS), UMR 8126; University of Paris Sud, 94805 Villejuif, France
| | - Sergio Marco
- Institut Curie, INSERM, U759, 91405 Orsay cedex, France
| | - Loic Hamon
- Institut National de la Santé et de la Recherche Médicale (INSERM), UMR829; Université Evry-Val d'Essonne, Evry 91025, France
| | - Patrick A Curmi
- Institut National de la Santé et de la Recherche Médicale (INSERM), UMR829; Université Evry-Val d'Essonne, Evry 91025, France
| | | | - Olivier Piétrement
- Centre National de la Recherche Scientifique (CNRS), UMR 8126; University of Paris Sud, 94805 Villejuif, France
| | - David Pastré
- Institut National de la Santé et de la Recherche Médicale (INSERM), UMR829; Université Evry-Val d'Essonne, Evry 91025, France
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