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Tong B, Liu Y, Wang Y, Li Q. PagMYB180 regulates adventitious rooting via a ROS/PCD-dependent pathway in poplar. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 346:112115. [PMID: 38768868 DOI: 10.1016/j.plantsci.2024.112115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Revised: 04/18/2024] [Accepted: 05/07/2024] [Indexed: 05/22/2024]
Abstract
The formation of adventitious roots (AR) is an essential step in the vegetative propagation of economically woody species. Reactive oxygen species (ROS) function as signaling molecules in regulating root growth and development. Here, we identified an R2R3-MYB transcription factor PagMYB180 as a regulator of AR formation in hybrid poplar (Populus alba × Populus glandulosa). PagMYB180 was specifically expressed in the vascular tissues of poplar roots, stems and leaves, and its protein was localized in the nucleus and acted as a transcriptional repressor. Both dominant repression and overexpression of PagMYB180 resulted in a significant reduction of AR quantity, a substantial increase of AR length, and an elevation of both the quantity and length of lateral roots (LR) compared to the wild type (WT) plants. Furthermore, PagMYB180 regulates programmed cell death (PCD) in root cortex cells, which is associated with elevated levels of ROS. Transcriptome and reverse transcription-quantitative PCR (RT-qPCR) analyses revealed that a series of differentially expressed genes are related to ROS, PCD and ethylene synthesis. Taken together, these results suggest that PagMYB180 may regulate AR development via a ROS/PCD-dependent pathway in poplar.
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Affiliation(s)
- Botong Tong
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University and Chinese Academy of Forestry, Harbin 150040, China
| | - Yingli Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China.
| | - Yucheng Wang
- State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin 150040, China
| | - Quanzi Li
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China
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Wexler Y, Schroeder JI, Shkolnik D. Hydrotropism mechanisms and their interplay with gravitropism. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:1732-1746. [PMID: 38394056 DOI: 10.1111/tpj.16683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/29/2024] [Accepted: 02/02/2024] [Indexed: 02/25/2024]
Abstract
Plants partly optimize their water recruitment from the growth medium by directing root growth toward a moisture source, a phenomenon termed hydrotropism. The default mechanism of downward growth, termed gravitropism, often functions to counteract hydrotropism when the water-potential gradient deviates from the gravity vector. This review addresses the identity of the root sites in which hydrotropism-regulating factors function to attenuate gravitropism and the interplay between these various factors. In this context, the function of hormones, including auxin, abscisic acid, and cytokinins, as well as secondary messengers, calcium ions, and reactive oxygen species in the conflict between these two opposing tropisms is discussed. We have assembled the available data on the effects of various chemicals and genetic backgrounds on both gravitropism and hydrotropism, to provide an up-to-date perspective on the interactions that dictate the orientation of root tip growth. We specify the relevant open questions for future research. Broadening our understanding of root mechanisms of water recruitment holds great potential for providing advanced approaches and technologies that can improve crop plant performance under less-than-optimal conditions, in light of predicted frequent and prolonged drought periods due to global climate change.
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Affiliation(s)
- Yonatan Wexler
- Faculty of Life Sciences, School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Julian I Schroeder
- Cell and Developmental Biology Department, School of Biological Sciences, University of California San Diego, La Jolla, California, 92093-0116, USA
| | - Doron Shkolnik
- Faculty of Agriculture, Food and Environment, Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
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Li X, Mu Y, Hua M, Wang J, Zhang X. Integrated phenotypic, transcriptomics and metabolomics: growth status and metabolite accumulation pattern of medicinal materials at different harvest periods of Astragalus Membranaceus Mongholicus. BMC PLANT BIOLOGY 2024; 24:358. [PMID: 38698337 PMCID: PMC11067282 DOI: 10.1186/s12870-024-05030-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 04/16/2024] [Indexed: 05/05/2024]
Abstract
BACKGROUND Astragalus membranaceus var. mongholicus (Astragalus), acknowledged as a pivotal "One Root of Medicine and Food", boasts dual applications in both culinary and medicinal domains. The growth and metabolite accumulation of medicinal roots during the harvest period is intricately regulated by a transcriptional regulatory network. One key challenge is to accurately pinpoint the harvest date during the transition from conventional yield content of medicinal materials to high and to identify the core regulators governing such a critical transition. To solve this problem, we performed a correlation analysis of phenotypic, transcriptome, and metabolome dynamics during the harvesting of Astragalus roots. RESULTS First, our analysis identified stage-specific expression patterns for a significant proportion of the Astragalus root genes and unraveled the chronology of events that happen at the early and later stages of root harvest. Then, the results showed that different root developmental stages can be depicted by co-expressed genes of Astragalus. Moreover, we identified the key components and transcriptional regulation processes that determine root development during harvest. Furthermore, through correlating phenotypes, transcriptomes, and metabolomes at different harvesting periods, period D (Nov.6) was identified as the critical period of yield and flavonoid content increase, which is consistent with morphological and metabolic changes. In particular, we identified a flavonoid biosynthesis metabolite, isoliquiritigenin, as a core regulator of the synthesis of associated secondary metabolites in Astragalus. Further analyses and experiments showed that HMGCR, 4CL, CHS, and SQLE, along with its associated differentially expressed genes, induced conversion of metabolism processes, including the biosynthesis of isoflavones and triterpenoid saponins substances, thus leading to the transition to higher medicinal materials yield and active ingredient content. CONCLUSIONS The findings of this work will clarify the differences in the biosynthetic mechanism of astragaloside IV and calycosin 7-O-β-D-glucopyranoside accumulation between the four harvesting periods, which will guide the harvesting and production of Astragalus.
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Affiliation(s)
- Xiaojie Li
- Engineering Research Center for the Seed Breeding of Chinese and Mongolian Medicinal Materials in Inner Mongolia, Hohhot, 010010, Inner Mongolia, China
- Key Laboratory of Grassland Resources, College of Grassland, Resource and Environmental Science, Inner Mongolia Agricultural University, Ministry of Education, Hohhot, 010021, P.R. of China
| | - Yingtong Mu
- Engineering Research Center for the Seed Breeding of Chinese and Mongolian Medicinal Materials in Inner Mongolia, Hohhot, 010010, Inner Mongolia, China
- Key Laboratory of Grassland Resources, College of Grassland, Resource and Environmental Science, Inner Mongolia Agricultural University, Ministry of Education, Hohhot, 010021, P.R. of China
| | - Mei Hua
- Engineering Research Center for the Seed Breeding of Chinese and Mongolian Medicinal Materials in Inner Mongolia, Hohhot, 010010, Inner Mongolia, China
- Key Laboratory of Grassland Resources, College of Grassland, Resource and Environmental Science, Inner Mongolia Agricultural University, Ministry of Education, Hohhot, 010021, P.R. of China
| | - Junjie Wang
- Engineering Research Center for the Seed Breeding of Chinese and Mongolian Medicinal Materials in Inner Mongolia, Hohhot, 010010, Inner Mongolia, China.
- Key Laboratory of Grassland Resources, College of Grassland, Resource and Environmental Science, Inner Mongolia Agricultural University, Ministry of Education, Hohhot, 010021, P.R. of China.
| | - Xiaoming Zhang
- Engineering Research Center for the Seed Breeding of Chinese and Mongolian Medicinal Materials in Inner Mongolia, Hohhot, 010010, Inner Mongolia, China.
- Key Laboratory of Grassland Resources, College of Grassland, Resource and Environmental Science, Inner Mongolia Agricultural University, Ministry of Education, Hohhot, 010021, P.R. of China.
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Mase K, Mizuno H, Nakamichi N, Suzuki T, Kojima T, Kamiya S, Takeuchi T, Kondo C, Yamashita H, Sakaoka S, Morikami A, Tsukagoshi H. AtMYB50 regulates root cell elongation by upregulating PECTIN METHYLESTERASE INHIBITOR 8 in Arabidopsis thaliana. PLoS One 2023; 18:e0285241. [PMID: 38134185 PMCID: PMC10745173 DOI: 10.1371/journal.pone.0285241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 12/04/2023] [Indexed: 12/24/2023] Open
Abstract
Plant root development involves multiple signal transduction pathways. Notably, phytohormones like auxin and cytokinin are well characterized for their molecular mechanisms of action. Reactive oxygen species (ROS) serve as crucial signaling molecules in controlling root development. The transcription factor, UPBEAT1 (UPB1) is responsible for maintaining ROS homeostasis at the root tip, influencing the transition from cell proliferation to differentiation. While UPB1 directly regulates peroxidase expression to control ROS homeostasis, it targets genes other than peroxidases, suggesting its involvement in root growth through non-ROS signals. Our investigation focused on the transcription factor MYB50, a direct target of UPB1, in Arabidopsis thaliana. By analyzing multiple fluorescent proteins and conducting RNA-seq and ChIP-seq, we unraveled a step in the MYB50 regulatory gene network. This analysis, in conjunction with the UPB1 regulatory network, demonstrated that MYB50 directly regulates the expression of PECTIN METHYLESTERASE INHIBITOR 8 (PMEI8). Overexpressing PMEI8, similar to the MYB50, resulted in reduced mature cell length. These findings establish MYB50 as a regulator of root growth within the UPB1 gene regulatory network. Our study presents a model involving transcriptional regulation by MYB50 in the UPB1 regulated root growth system and sheds light on cell elongation via pectin modification.
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Affiliation(s)
- Kosuke Mase
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | - Honomi Mizuno
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | - Norihito Nakamichi
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan
| | - Takamasa Suzuki
- Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, Kasugai, Aichi, Japan
| | - Takaaki Kojima
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | - Sho Kamiya
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | - Taiga Takeuchi
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | - Chiko Kondo
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
| | | | - Satomi Sakaoka
- Faculty of Agriculture, Meijo University, Nagoya, Aichi, Japan
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Bertoldo G, Chiodi C, Della Lucia MC, Borella M, Ravi S, Baglieri A, Lucenti P, Ganasula BK, Mulagala C, Squartini A, Concheri G, Magro F, Campagna G, Stevanato P, Nardi S. Brown Seaweed Extract (BSE) Application Influences Auxin- and ABA-Related Gene Expression, Root Development, and Sugar Yield in Beta vulgaris L. PLANTS (BASEL, SWITZERLAND) 2023; 12:843. [PMID: 36840191 PMCID: PMC9965194 DOI: 10.3390/plants12040843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 02/03/2023] [Accepted: 02/06/2023] [Indexed: 06/18/2023]
Abstract
The molecular and phenotypic effects of a brown seaweed extract (BSE) were assessed in sugar beet (Beta vulgaris L.). Transcript levels of BSE-treated and untreated plants were studied by RNA-seq and validated by quantitative real-time PCR analysis (RT-qPCR). Root morphology, sugar yield, and processing quality traits were also analyzed to better elucidate the treatment effects. RNA-seq revealed 1019 differentially expressed genes (DEGs) between the BSE-treated and untreated plants. An adjusted p-value < 0.1 and an absolute value of log2 (fold change) greater than one was used as criteria to select the DEGs. Gene ontology (GO) identified hormone pathways as an enriched biological process. Six DEGs involved in auxin and ABA pathways were validated using RT-qPCR. The phenotypic characterization indicated that BSE treatment led to a significant increase (p < 0.05) in total root length and the length of fine roots of plants grown under hydroponics conditions. The sugar yield of plants grown under field conditions was higher (p < 0.05) in the treated field plots compared with the control treatment, without impacting the processing quality. Our study unveiled the relevant effects of BSE application in regulating auxin- and ABA-related gene expression and critical traits related to sugar beet development and yield.
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Affiliation(s)
- Giovanni Bertoldo
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Claudia Chiodi
- Crop Production and Biostimulation Laboratory, Interfacultary School of Bioengineers, Université Libre de Bruxelles, Campus Plaine CP 245, Bd du Triomphe, 1050 Brussels, Belgium
| | - Maria Cristina Della Lucia
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Matteo Borella
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Samathmika Ravi
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Andrea Baglieri
- Dipartimento di Agricoltura Alimentazione e Ambiente (Di3A), Università di Catania, Via S. Sofia 100, 95123 Catania, Italy
| | - Piergiorgio Lucenti
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Bhargava Krishna Ganasula
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Chandana Mulagala
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Andrea Squartini
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Giuseppe Concheri
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | | | - Giovanni Campagna
- CO.PRO.B—Cooperativa Produttori Bieticoli, Via Mora 56, 40061 Minerbio, Italy
| | - Piergiorgio Stevanato
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
| | - Serenella Nardi
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), Campus of Agripolis, University of Padova, Viale dell’Università 16, 35020 Legnaro, Italy
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6
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Li L, Zang X, Liu J, Ren J, Wang Z, Yang D. Integrated physiological and weighted gene co-expression network analysis reveals the hub genes engaged in nitrate-regulated alleviation of ammonium toxicity at the seedling stage in wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1012966. [PMID: 36466221 PMCID: PMC9713819 DOI: 10.3389/fpls.2022.1012966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 11/02/2022] [Indexed: 06/17/2023]
Abstract
Wheat has a specific preference for NO3 - and shows toxicity symptoms under high NH4 + concentrations. Increasing the nitrate supply may alleviate ammonium stress. Nevertheless, the mechanisms underlying the nitrate regulation of wheat root growth to alleviate ammonium toxicity remain unclear. In this study, we integrated physiological and weighted gene co-expression network analysis (WGCNA) to identify the hub genes involved in nitrate alleviation of ammonium toxicity at the wheat seedling stage. Five NH4 +/NO3 - ratio treatments, including 100/0 (Na), 75/25 (Nr1), 50/50 (Nr2), 25/75 (Nr3), and 0/100 (Nn) were tested in this study. The results showed that sole ammonium treatment (Na) increased the lateral root number but reduced root biomass. Increasing the nitrate supply significantly increased the root biomass. Increasing nitrate levels decreased abscisic acid (ABA) content and increased auxin (IAA) content. Furthermore, we identified two modules (blue and turquoise) using transcriptome data that were significantly related to root physiological growth indicators. TraesCS6A02G178000 and TraesCS2B02G056300 were identified as hub genes in the two modules which coded for plastidic ATP/ADP-transporter and WRKY62 transcription factors, respectively. Additionally, network analysis showed that in the blue module, TraesCS6A02G178000 interacts with downregulated genes that coded for indolin-2-one monooxygenase, SRG1, DETOXIFICATION, and wall-associated receptor kinase. In the turquoise module, TraesCS2B02G056300 was highly related to the genes that encoded ERD4, ERF109, CIGR2, and WD40 proteins, and transcription factors including WRKY24, WRKY22, MYB30, and JAMYB, which were all upregulated by increasing nitrate supply. These studies suggest that increasing the nitrate supply could improve root growth and alleviate ammonium toxicity through physiological and molecular regulation networks, including ROS, hormonal crosstalk, and transcription factors.
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7
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Chen Z, Wu Z, Dong W, Liu S, Tian L, Li J, Du H. MYB Transcription Factors Becoming Mainstream in Plant Roots. Int J Mol Sci 2022; 23:ijms23169262. [PMID: 36012533 PMCID: PMC9409031 DOI: 10.3390/ijms23169262] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 08/12/2022] [Accepted: 08/16/2022] [Indexed: 11/26/2022] Open
Abstract
The function of the root system is crucial for plant survival, such as anchoring plants, absorbing nutrients and water from the soil, and adapting to stress. MYB transcription factors constitute one of the largest transcription factor families in plant genomes with structural and functional diversifications. Members of this superfamily in plant development and cell differentiation, specialized metabolism, and biotic and abiotic stress processes are widely recognized, but their roles in plant roots are still not well characterized. Recent advances in functional studies remind us that MYB genes may have potentially key roles in roots. In this review, the current knowledge about the functions of MYB genes in roots was summarized, including promoting cell differentiation, regulating cell division through cell cycle, response to biotic and abiotic stresses (e.g., drought, salt stress, nutrient stress, light, gravity, and fungi), and mediate phytohormone signals. MYB genes from the same subfamily tend to regulate similar biological processes in roots in redundant but precise ways. Given their increasing known functions and wide expression profiles in roots, MYB genes are proposed as key components of the gene regulatory networks associated with distinct biological processes in roots. Further functional studies of MYB genes will provide an important basis for root regulatory mechanisms, enabling a more inclusive green revolution and sustainable agriculture to face the constant changes in climate and environmental conditions.
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Affiliation(s)
- Zhuo Chen
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Zexuan Wu
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Wenyu Dong
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Shiying Liu
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Lulu Tian
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Jiana Li
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Hai Du
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
- Correspondence: ; Tel.: +86-182-2348-0008
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8
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He S, Wang H, Hao X, Wu Y, Bian X, Yin M, Zhang Y, Fan W, Dai H, Yuan L, Zhang P, Chen L. Dynamic network biomarker analysis discovers IbNAC083 in the initiation and regulation of sweet potato root tuberization. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:793-813. [PMID: 34460981 DOI: 10.1111/tpj.15478] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Revised: 08/19/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
The initiation and development of storage roots (SRs) are intricately regulated by a transcriptional regulatory network. One key challenge is to accurately pinpoint the tipping point during the transition from pre-swelling to SRs and to identify the core regulators governing such a critical transition. To solve this problem, we performed a dynamic network biomarker (DNB) analysis of transcriptomic dynamics during root development in Ipomoea batatas (sweet potato). First, our analysis identified stage-specific expression patterns for a significant proportion (>9%) of the sweet potato genes and unraveled the chronology of events that happen at the early and later stages of root development. Then, the results showed that different root developmental stages can be depicted by co-expressed modules of sweet potato genes. Moreover, we identified the key components and transcriptional regulatory network that determine root development. Furthermore, through DNB analysis an early stage, with a root diameter of 3.5 mm, was identified as the critical period of SR swelling initiation, which is consistent with morphological and metabolic changes. In particular, we identified a NAM/ATAF/CUC (NAC) domain transcription factor, IbNAC083, as a core regulator of this initiation in the DNB-associated network. Further analyses and experiments showed that IbNAC083, along with its associated differentially expressed genes, induced dysfunction of metabolism processes, including the biosynthesis of lignin, flavonol and starch, thus leading to the transition to swelling roots.
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Affiliation(s)
- Shutao He
- State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Hongxia Wang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Xiaomeng Hao
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- CAS Center for Excellence in Molecular Plant Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yinliang Wu
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- CAS Center for Excellence in Molecular Plant Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaofeng Bian
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Minhao Yin
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- College of Tree Peony, Henan University of Science and Technology, Luoyang, 471000, China
| | - Yandi Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- CAS Center for Excellence in Molecular Plant Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Weijuan Fan
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
| | - Hao Dai
- State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, 200031, China
| | - Ling Yuan
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, Kentucky, 40506, USA
| | - Peng Zhang
- National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China
- CAS Center for Excellence in Molecular Plant Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Luonan Chen
- State Key Laboratory of Cell Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, 200031, China
- Key Laboratory of Systems Health Science of Zhejiang Province, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou, 310024, China
- School of Life Science and Technology, ShanghaiTech University, Shanghai, 201210, China
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Wen X, Geng F, Cheng Y, Wang J. Ectopic expression of CsMYB30 from Citrus sinensis enhances salt and drought tolerance by regulating wax synthesis in Arabidopsis thaliana. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 166:777-788. [PMID: 34217134 DOI: 10.1016/j.plaphy.2021.06.045] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2021] [Revised: 06/23/2021] [Accepted: 06/23/2021] [Indexed: 05/19/2023]
Abstract
Epidermal wax plays a critical role in plant resistance and fruit storage properties. As such, the regulation of wax production is of great importance in fruit, but there is limited information about this process in citrus plants. In this study, we investigated the role of the Citrus sinensis transcription factor CsMYB30 in the regulation of wax synthesis by cloning and ectopically expressing the gene in Arabidopsis and examining the effects on wax formation and stress tolerance. CsMYB30 transgenic Arabidopsis plants showed improved tolerance to salt and drought stresses compared to their wild-type counterparts. Ectopic expression of CsMYB30 also caused changes to the microstructure of wax crystals and wax composition, a significant increase in wax load, and a decrease in the permeability of leaf epidermis. Additionally, most genes related to the wax synthesis pathway were upregulated at the transcription level. These findings suggest that CsMYB30 is a transcriptional regulator of wax production in citrus and can serve as a potential target gene in genetic engineering or breeding efforts to improve citrus fruit resistance and storage performance.
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Affiliation(s)
- Xuefei Wen
- Key Laboratory of Coarse Cereal Processing (Ministry of Agriculture and Rural Affairs), School of Food and Biological Engineering, Chengdu University, No. 2025 Chengluo Avenue, Chengdu, 610106, China
| | - Fang Geng
- Key Laboratory of Coarse Cereal Processing (Ministry of Agriculture and Rural Affairs), School of Food and Biological Engineering, Chengdu University, No. 2025 Chengluo Avenue, Chengdu, 610106, China
| | - Yunjiang Cheng
- College of Horticulture & Forestry Sciences, Huazhong Agricultural University, No. 1 Shizishan Street, Wuhan, 430070, China
| | - Jinqiu Wang
- Key Laboratory of Coarse Cereal Processing (Ministry of Agriculture and Rural Affairs), School of Food and Biological Engineering, Chengdu University, No. 2025 Chengluo Avenue, Chengdu, 610106, China.
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Shehab AESAE, Guo Y. Effects of nitrogen fertilization and drought on hydrocyanic acid accumulation and morpho-physiological parameters of sorghums. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2021; 101:3355-3365. [PMID: 33227149 DOI: 10.1002/jsfa.10965] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 10/28/2020] [Accepted: 11/23/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Nitrogen fertilization can increase sorghum yield and quality and the hydrocyanic acid (HCN) accumulation in plants, increasing the risk of animal toxicity, particularly under drought conditions. In this study, plants of three sorghum genotypes (sweet sorghum, sudangrass and hybrid sorghum) were supplemented with nitrogen (0, 60, 90 and 120 kg N ha-1 ) under well-watered and drought-stressed conditions, aiming to investigate the responses of morpho-physiological parameters and HCN accumulation to drought and nitrogen fertilization. RESULTS Drought caused a decline in growth and photosynthesis. Average HCN content increased by 27.85% in drought-stressed plants when compared with those in well-watered plants. Drought increased the proline and soluble protein content, the content of O2 - , H2 O2 and malondialdehyde (MDA), and the activities of antioxidant enzymes in leaves of all three genotypes. Maximum plant growth and higher plant nutrient content (nitrogen and phosphorus) were observed at 120 kg N ha-1 , followed by 90 and 60 kg N ha-1 . However, a sharp increase in HCN content and a decrease in antioxidant enzyme activities were observed when nitrogen rates increased from 90 to 120 kg N ha-1 , suggesting that 90 kg N ha-1 might be better for sorghums under drought conditions. CONCLUSION These results suggest that optimum nitrogen application on sorghum under drought conditions could achieve a balance between plant defense and food safety, attributed to the reduced MDA, O2 - and H2 O2 accumulation, the improvement in photosynthesis parameters, the increase in soluble protein and proline content, and the increase in antioxidant enzyme activities. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Abd El Salam Abd El Shehab
- College of Animal Science and Technology, Southwest University, Chongqing, China
- Department of Agronomy, Faculty of Agriculture, AL-Azhar University, Cairo, Egypt
| | - Yanjun Guo
- College of Animal Science and Technology, Southwest University, Chongqing, China
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Mase K, Tsukagoshi H. Reactive Oxygen Species Link Gene Regulatory Networks During Arabidopsis Root Development. FRONTIERS IN PLANT SCIENCE 2021; 12:660274. [PMID: 33986765 PMCID: PMC8110921 DOI: 10.3389/fpls.2021.660274] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 03/22/2021] [Indexed: 05/22/2023]
Abstract
Plant development under altered nutritional status and environmental conditions and during attack from invaders is highly regulated by plant hormones at the molecular level by various signaling pathways. Previously, reactive oxygen species (ROS) were believed to be harmful as they cause oxidative damage to cells; however, in the last decade, the essential role of ROS as signaling molecules regulating plant growth has been revealed. Plant roots accumulate relatively high levels of ROS, and thus, maintaining ROS homeostasis, which has been shown to regulate the balance between cell proliferation and differentiation at the root tip, is important for proper root growth. However, when the balance is disturbed, plants are unable to respond to the changes in the surrounding conditions and cannot grow and survive. Moreover, ROS control cell expansion and cell differentiation processes such as root hair formation and lateral root development. In these processes, the transcription factor-mediated gene expression network is important downstream of ROS. Although ROS can independently regulate root growth to some extent, a complex crosstalk occurs between ROS and other signaling molecules. Hormone signals are known to regulate root growth, and ROS are thought to merge with these signals. In fact, the crosstalk between ROS and these hormones has been elucidated, and the central transcription factors that act as a hub between these signals have been identified. In addition, ROS are known to act as important signaling factors in plant immune responses; however, how they also regulate plant growth is not clear. Recent studies have strongly indicated that ROS link these two events. In this review, we describe and discuss the role of ROS signaling in root development, with a particular focus on transcriptional regulation. We also summarize the crosstalk with other signals and discuss the importance of ROS as signaling molecules for plant root development.
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Li P, Wen J, Chen P, Guo P, Ke Y, Wang M, Liu M, Tran LSP, Li J, Du H. MYB Superfamily in Brassica napus: Evidence for Hormone-Mediated Expression Profiles, Large Expansion, and Functions in Root Hair Development. Biomolecules 2020; 10:biom10060875. [PMID: 32517318 PMCID: PMC7356979 DOI: 10.3390/biom10060875] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/16/2020] [Accepted: 06/05/2020] [Indexed: 01/08/2023] Open
Abstract
MYB proteins are involved in diverse important biological processes in plants. Herein, we obtained the MYB superfamily from the allotetraploid Brassica napus, which contains 227 MYB-related (BnMYBR/Bn1R-MYB), 429 R2R3-MYB (Bn2R-MYB), 22 R1R2R3-MYB (Bn3R-MYB), and two R1R2R2R1/2-MYB (Bn4R-MYB) genes. Phylogenetic analysis classified the Bn2R-MYBs into 43 subfamilies, and the BnMYBRs into five subfamilies. Sequence characteristics and exon/intron structures within each subfamily of the Bn2R-MYBs and BnMYBRs were highly conserved. The whole superfamily was unevenly distributed on 19 chromosomes and underwent unbalanced expansion in B. napus. Allopolyploidy between B. oleracea and B. rapa mainly contributed to the expansion in their descendent B. napus, in which B. rapa-derived genes were more retained. Comparative phylogenetic analysis of 2R-MYB proteins from nine Brassicaceae and seven non-Brassicaceae species identified five Brassicaceae-specific subfamilies and five subfamilies that are lacking from the examined Brassicaceae species, which provided an example for the adaptive evolution of the 2R-MYB gene family alongside angiosperm diversification. Ectopic expression of four Bn2R-MYBs under the control of the viral CaMV35S and/or native promoters could rescue the lesser root hair phenotype of the Arabidopsis thaliana wer mutant plants, proving the conserved negative roles of the 2R-MYBs of the S15 subfamily in root hair development. RNA-sequencing data revealed that the Bn2R-MYBs and BnMYBRs had diverse transcript profiles in roots in response to the treatments with various hormones. Our findings provide valuable information for further functional characterizations of B. napusMYB genes.
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Affiliation(s)
- Pengfeng Li
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Jing Wen
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Ping Chen
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Pengcheng Guo
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Yunzhuo Ke
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Mangmang Wang
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Mingming Liu
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Lam-Son Phan Tran
- Institute of Research and Development, Duy Tan University, 03 Quang Trung, Da Nang 550000, Vietnam
- Correspondence: (L.-S.P.T.); or (H.D.); Tel.: +86-18223480008 (H.D.)
| | - Jiana Li
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
| | - Hai Du
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China; (P.L.); (J.W.); (P.C.); (P.G.); (Y.K.); (M.W.); (M.L.); (J.L.)
- Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
- Correspondence: (L.-S.P.T.); or (H.D.); Tel.: +86-18223480008 (H.D.)
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ANAC032 regulates root growth through the MYB30 gene regulatory network. Sci Rep 2019; 9:11358. [PMID: 31388054 PMCID: PMC6684591 DOI: 10.1038/s41598-019-47822-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 07/24/2019] [Indexed: 01/03/2023] Open
Abstract
Reactive oxygen species (ROS) play important roles as root growth regulators. We previously reported a comprehensive transcriptomic atlas, which we named ROS-map, that revealed ROS-responsible genes in Arabidopsis root tips. By using ROS-map, we have characterised an early ROS response key transcription factor, MYB30, as a regulator of root cell elongation under ROS signals. However, there are other ROS-responsible transcription factors which have the potential to regulate root growth. In the present study, we characterised the function of another early ROS-responsible transcription factor, ANAC032, that was selected from ROS-map. Overexpression of ANAC032 fused with the transcriptional activation domain, VP16, inhibited root growth, especially decreasing cell elongation. By transcriptome analysis, we revealed that ANAC032 regulated many stress-responsible genes in the roots. Intriguingly, ANAC032 upregulated MYB30 and its target genes. The upregulation of MYB30 target genes was completely abolished in the ANAC032-VP16x2 OX and ANAC032 estradiol-inducible line in myb30-2 mutants. Moreover, root growth inhibition was alleviated in ANAC032-OX in myb30-2 mutants. Overall, we characterised an upstream transcription factor, ANAC032, of the MYB30 transcriptional cascade which is a key regulator for root cell elongation under ROS signalling.
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Takatsuka H, Umeda M. ABA inhibits root cell elongation through repressing the cytokinin signaling. PLANT SIGNALING & BEHAVIOR 2019; 14:e1578632. [PMID: 30741075 PMCID: PMC6422398 DOI: 10.1080/15592324.2019.1578632] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Revised: 01/24/2019] [Accepted: 01/28/2019] [Indexed: 05/18/2023]
Abstract
Cell elongation, which plays an important role in root penetration into the soil, responds to a variety of environmental factors. A previous study demonstrated that abscisic acid, a phytohormone involved in stress responses, inhibits root growth by delaying the onset of cell elongation. In contrast, we recently reported that cytokinins promote elongation of root cells by enhancing actin bundling. However, the control of root cell elongation through the interaction between abscisic acid and cytokinin signaling has not yet been uncovered. Here, we show that abscisic acid-induced delay in cell elongation requires inhibition of cytokinin signaling; further, stress is signaled to cell elongation by the pathway mediated by B-type ARABIDOPSIS RESPONSE REGULATOR 2 (ARR2), which retards root growth.
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Affiliation(s)
- Hirotomo Takatsuka
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, Japan
| | - Masaaki Umeda
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara, Japan
- CONTACT Masaaki Umeda Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
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