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Ullah R, Farias J, Feyissa BA, Tsui MTK, Chow A, Williams C, Karanfil T, Ligaba-Osena A. Combined effects of polyamide microplastic and sulfamethoxazole in modulating the growth and transcriptome profile of hydroponically grown rice (Oryza sativa L.). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 952:175909. [PMID: 39233070 DOI: 10.1016/j.scitotenv.2024.175909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Revised: 08/28/2024] [Accepted: 08/28/2024] [Indexed: 09/06/2024]
Abstract
The use of reclaimed water from wastewater treatment plants for irrigation has a risk of introducing micropollutants such as microplastics (MPs) and antimicrobials (AMs) into the agroecosystem. This study was conducted to investigate the effects of single and combined treatment of 0.1 % polyamide (PA ∼15 μm), and varying sulfamethoxazole (SMX) levels 0, 10, 50, and 150 mg/L on rice seedlings (Oryza sativa L.) for 12 days. The study aimed to assess the impact of these contaminants on the morphological, physiological, and biochemical parameters of the rice plants. The findings revealed that rice seedlings were not sensitive to PA alone. However, SMX alone or in combination with PA, significantly inhibited shoot and root growth, total biomass, and affected photosynthetic pigments. Higher concentrations of SMX increased antioxidant enzyme activity, indicating oxidative stress. The roots had a higher SMX content than the shoots, and the concentration of minerals such as iron, copper, and magnesium were reduced in roots treated with SMX. RNA-seq analysis showed changes in the expression of genes related to stress, metabolism, and transport in response to the micropollutants. Overall, this study provides valuable insights on the combined impacts of MPs and AMs on food crops, the environment, and human health in future risk assessments and management strategies in using reclaimed water.
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Affiliation(s)
- Raza Ullah
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA
| | - Julia Farias
- USDA-ARS, US Arid Land Agricultural Research Center, 21881 N. Cardon Ln, Maricopa, AZ 85138, USA
| | | | - Martin Tsz-Ki Tsui
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA; School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, New Territories, China; Earth and Environmental Sciences Program, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, China
| | - Alex Chow
- Earth and Environmental Sciences Program, The Chinese University of Hong Kong, Hong Kong SAR, Shatin, China
| | - Clinton Williams
- USDA-ARS, US Arid Land Agricultural Research Center, 21881 N. Cardon Ln, Maricopa, AZ 85138, USA
| | - Tanju Karanfil
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC 29634, USA
| | - Ayalew Ligaba-Osena
- Laboratory of Plant Molecular Biology and Biotechnology, Department of Biology, University of North Carolina Greensboro, Greensboro, NC 27402, USA.
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Mondal R, Majumdar A, Sarkar S, Goswami C, Joardar M, Das A, Mukhopadhyay PK, Roychowdhury T. An extensive review of arsenic dynamics and its distribution in soil-aqueous-rice plant systems in south and Southeast Asia with bibliographic and meta-data analysis. CHEMOSPHERE 2024; 352:141460. [PMID: 38364927 DOI: 10.1016/j.chemosphere.2024.141460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 02/12/2024] [Accepted: 02/13/2024] [Indexed: 02/18/2024]
Abstract
Millions of people worldwide are affected by arsenic (As) contamination, particularly in South and Southeast Asian countries, where large-scale dependence on the usage of As-contaminated groundwater in drinking and irrigation is a familiar practice. Rice (Oryza sativa) cultivation is commonly done in South and Southeast Asian countries as a preferable crop which takes up more As than any other cereals. The present article has performed a scientific meta-data analysis and extensive bibliometric analysis to demonstrate the research trend in global rice As contamination scenario in the timeframe of 1980-2023. This study identified that China contributes most with the maximum number of publications followed by India, USA, UK and Bangladesh. The two words 'arsenic' and 'rice' have been identified as the most dominant keywords used by the authors, found through co-occurrence cluster analysis with author keyword association study. The comprehensive perceptive attained about the factors affecting As load in plant tissue and the nature of the micro-environment augment the contamination of rice cultivars in the region. This extensive review analyses soil parameters through meta-data regression assessment that influence and control As dynamics in soil with its further loading into rice grains and presents that As content and OM are inversely related and slightly correlated to the pH increment of the soil. Additionally, irrigation and water management practices have been found as a potential modulator of soil As concentration and bioavailability, presented through a linear fit with 95% confidence interval method.
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Affiliation(s)
- Rubia Mondal
- Department of Life Sciences, Presidency University, Kolkata, India
| | - Arnab Majumdar
- School of Environmental Studies, Jadavpur University, Kolkata, India
| | - Sukamal Sarkar
- Divison of Agronomy, School of Agriculture and Rural Development, Ramakrishna Mission Vivekananda Educational and Research Institute, Ramakrishna Mission Ashrama, Narendrapur, Kolkata, India
| | - Chandrima Goswami
- Department of Environmental Studies, Rabindra Bharati University, Kolkata, India
| | - Madhurima Joardar
- School of Environmental Studies, Jadavpur University, Kolkata, India
| | - Antara Das
- School of Environmental Studies, Jadavpur University, Kolkata, India
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Pandey A, Wu LB, Murugaiyan V, Schaaf G, Ali J, Frei M. Differential effects of arsenite and arsenate on rice (Oryza sativa) plants differing in glutathione S-transferase gene expression. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:92268-92281. [PMID: 37486470 PMCID: PMC10447600 DOI: 10.1007/s11356-023-28833-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 07/13/2023] [Indexed: 07/25/2023]
Abstract
Contamination of paddy soils with arsenic (As) can cause phytotoxicity in rice and increase the accumulation of arsenic in grains. The uptake and accumulation of As in rice depends on the different As species present in the soil. Plants detoxify As by conjugating and sequestering xenobiotic compounds into vacuoles using various enzymes. However, the severity of damage induced by arsenite (As(III)) and arsenate (As(V)), as well as the roles of glutathione S-transferase in detoxifying these As species in rice, are not fully understood. In this study, we developed plant materials overexpressing a glutathione S-transferase gene OsGSTU40 under the control of the maize UBIL promoter. Through systematic investigations of both wild-type Nipponbare (Oryza sativa L., ssp. japonica) and OsGSTU40 overexpression lines under chronic or acute stress of As, we aimed to understand the toxic effects of both As(III) and As(V) on rice plants at the vegetative growth stage. We hypothesized that (i) As(III) and As(V) have different toxic effects on rice plants and (ii) OsGSTU40 played positive roles in As toxicity tolerance. Our results showed that As(III) was more detrimental to plant growth than As(V) in terms of plant growth, biomass, and lipid peroxidation in both chronic and acute exposure. Furthermore, overexpression of OsGSTU40 led to better plant growth even though uptake of As(V), but not As(III), into shoots was enhanced in transgenic plants. In acute As(III) stress, transgenic plants exhibited a lower level of lipid peroxidation than wild-type plants. The element composition of plants was dominated by the different As stress treatments rather than by the genotype, while the As concentration was negatively correlated with phosphorus and silicon. Overall, our findings suggest that As(III) is more toxic to plants than As(V) and that glutathione S-transferase OsGSTU40 differentially affects plant reactions and tolerance to different species of arsenic.
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Affiliation(s)
- Ambika Pandey
- Department of Agronomy and Crop Physiology, Institute for Agronomy and Plant Breeding I, Justus Liebig University Giessen, 35390, Giessen, Germany
- Rice Breeding Platform, International Rice Research Institute (IRRI), Los Baños, 4031, Laguna, Philippines
| | - Lin-Bo Wu
- Department of Agronomy and Crop Physiology, Institute for Agronomy and Plant Breeding I, Justus Liebig University Giessen, 35390, Giessen, Germany
| | - Varunseelan Murugaiyan
- Rice Breeding Platform, International Rice Research Institute (IRRI), Los Baños, 4031, Laguna, Philippines
| | - Gabriel Schaaf
- Institute of Crop Sciences and Resource Conservation (INRES), Rheinische Friedrich-Wilhelms-University Bonn, 53115, Bonn, Germany
| | - Jauhar Ali
- Rice Breeding Platform, International Rice Research Institute (IRRI), Los Baños, 4031, Laguna, Philippines
| | - Michael Frei
- Department of Agronomy and Crop Physiology, Institute for Agronomy and Plant Breeding I, Justus Liebig University Giessen, 35390, Giessen, Germany.
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Sehar S, Adil MF, Askri SMH, Feng Q, Wei D, Sahito FS, Shamsi IH. Pan-transcriptomic Profiling Demarcates Serendipita Indica-Phosphorus Mediated Tolerance Mechanisms in Rice Exposed to Arsenic Toxicity. RICE (NEW YORK, N.Y.) 2023; 16:28. [PMID: 37354226 DOI: 10.1186/s12284-023-00645-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Accepted: 06/10/2023] [Indexed: 06/26/2023]
Abstract
Inadvertent accumulation of arsenic (As) in rice (Oryza sativa L.) is a concern for people depending on it for their subsistence, as it verily causes epigenetic alterations across the genome as well as in specific cells. To ensure food safety, certain attempts have been made to nullify this highest health hazard encompassing physiological, chemical and biological methods. Albeit, the use of mycorrhizal association along with nutrient reinforcement strategy has not been explored yet. Mechanisms of response and resistance of two rice genotypes to As with or without phosphorus (P) nutrition and Serendipita indica (S. indica; S.i) colonization were explored by root transcriptome profiling in the present study. Results revealed that the resistant genotype had higher auxin content and root plasticity, which helped in keeping the As accumulation and P starvation response to a minimum under alone As stress. However, sufficient P supply and symbiotic relationship switched the energy resources towards plant's developmental aspects rather than excessive root proliferation. Higher As accumulating genotype (GD-6) displayed upregulation of ethylene signaling/biosynthesis, root stunting and senescence related genes under As toxicity. Antioxidant defense system and cytokinin biosynthesis/signaling of both genotypes were strengthened under As + S.i + P, while the upregulation of potassium (K) and zinc (Zn) transporters depicted underlying cross-talk with iron (Fe) and P. Differential expression of phosphate transporters, peroxidases and GSTs, metal detoxification/transport proteins, as well as phytohormonal metabolism were responsible for As detoxification. Taken together, S. indica symbiosis fortified with adequate P-fertilizer can prove to be effective in minimizing As acquisition and accumulation in rice plants.
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Affiliation(s)
- Shafaque Sehar
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Muhammad Faheem Adil
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Syed Muhammad Hassan Askri
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Qidong Feng
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Dongming Wei
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Falak Sehar Sahito
- Dow International Medical College, Dow University of Health Sciences, Karachi, 74200, Pakistan
| | - Imran Haider Shamsi
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
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Zeeshan M, Hu YX, Guo XH, Sun CY, Salam A, Ahmad S, Muhammad I, Nasar J, Jahan MS, Fahad S, Zhou XB. Physiological and transcriptomic study reveal SeNPs-mediated AsIII stress detoxification mechanisms involved modulation of antioxidants, metal transporters, and transcription factors in Glycine max L. (Merr.) roots. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 317:120637. [PMID: 36400144 DOI: 10.1016/j.envpol.2022.120637] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 10/10/2022] [Accepted: 11/08/2022] [Indexed: 06/16/2023]
Abstract
Physiological changes and genome-wide alteration in gene expression were performed in soybean (Glycine max [L.] Merr.) roots exposed to AsⅢ (25 μmol/L) alone and supplemented with selenium nanoparticles (SeNPs) at the concentration of 10 and 25 μmol/L at the V2 growth stage. Excessive arsenic in the root zone poses a potential threat to soybean yield, particularly to roots, due to the limited translocation of AsIII from root to shoot in the case of soybean. We hypothesized that SeNPs can relieve AsⅢ toxicity to soybean root by reducing the AsⅢ uptake and regulating the internal tolerance mechanism of the plants. Results accomplished that SeNPs had positive impact on soybean dry weight and roots parameters under AsⅢ stress. Then, we further evaluated physiological indexes, whole genome transcriptomic analysis and quantitative real-time PCR to elucidate the underlying mechanism of AsⅢ tolerance under SeNPs supplementation. Under the condition of AsⅢ-stress, SeNPs exposure significantly reduced the electrolyte leakage, O2-•, H2O2 and MDA accumulation while increasing the antioxidants level. The RNA-seq dataset revealed total of 5819 up and 7231 down expressed DEGs across all libraries. The number of exclusively regulated genes were higher under As + SeNP10 (4909) treatment than in the AsⅢ-alone (4830) and As + SeNP25 (3311) treatments. The KEGG and GO analyses revealed that stress responsive DEGs such as glutathione S-transferase, glutathione peroxidase, ascorbate, glutaredoxin, thioredoxin, and phytochelatins synthase are responsible for AsⅢ tolerance under the SeNPs supplementation. Similarly, sulfate transporter, and ABC transporters (ATP-binding cassettes) expression were induced, and aquaporin channels related DEGs expression were reduced under SeNPs application in AsⅢ exposure condition. Furthermore, the expression of molecular chaperones (HSP) and transcription factors (MYB, bZIP, bHLH, and HSFs) were increased in SeNPs treatment groups. These results provide vital information of AsⅢ tolerance mechanism in response to SeNPs in soybean. We suggest that functional characterization of these genes will help us learn more about the SeNPs responsive arsenic tolerance mechanism in soybean.
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Affiliation(s)
- Muhammad Zeeshan
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China; Key Laboratory of Natural Pesticide and Chemical Biology of the Ministry of Education, South China Agricultural University, Guangzhou, 510642, China; Henry Fok School of Biology and Agriculture, Shaoguan University, Shaoguan 512005, China
| | - Yu Xin Hu
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Xiao Hong Guo
- Cash Crops Research Institute, Guangxi Academy of Agricultural Sciences, China
| | - Chen Yu Sun
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Abdul Salam
- Zhejiang Key Lab of Crop Germplasm, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China
| | - Shakeel Ahmad
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Ihsan Muhammad
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Jamal Nasar
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Mohammad Shah Jahan
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China
| | - Shah Fahad
- Department of Agronomy, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa 23200, Pakistan
| | - Xun Bo Zhou
- Guangxi Key Laboratory for Agro-Environment and Agro-Product Safety, Guangxi Colleges and Universities Key Laboratory of Crop Cultivation and Tillage, College of Agriculture, Guangxi University, Nanning 530004, China.
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6
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Mirza Z, Haque MM, Gupta M. WRKY transcription factors: a promising way to deal with arsenic stress in rice. Mol Biol Rep 2022; 49:10895-10904. [PMID: 35941412 DOI: 10.1007/s11033-022-07772-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 06/30/2022] [Accepted: 07/05/2022] [Indexed: 11/30/2022]
Abstract
Arsenic (As) is a global carcinogenic contaminant, and is one of the significant environmental constraints that limits the development and yield of crop plants. It is always tagged along with rice as rice takes up As and tends to accumulate it in grains. This amassment makes a way for As to get into the food chain that leads to unforeseen human health risks. Being viewed as parallel with toxicity, As in rice is an important global risk that calls for an urgent solution. WRKY Transcription Factors (TFs) seems to be promising in this area. The classical and substantial progress in the molecular mechanism of WRKY TFs, strengthened the understanding of innovative solutions for dealing with As in rice. Here, we review the potential of WRKY TFs under As stressed rice as a genetic solution and also provide insights into As and rice. Further, we develop an understanding of WRKY TF gene family and its regulation in rice. To date, studies on the role of WRKY TFs under As stressed rice are lacking. This area needs to be explored more so that this gene family can be utilized as an effective genetic tool that can break the As cycle to develop low or As free rice cultivar.
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Affiliation(s)
- Zainab Mirza
- Ecotoxicogenomics Lab, Department of Biotechnology, Jamia Millia Islamia, 25, New Delhi, India
| | - Mohammad Mahfuzul Haque
- Ecotoxicogenomics Lab, Department of Biotechnology, Jamia Millia Islamia, 25, New Delhi, India
| | - Meetu Gupta
- Ecotoxicogenomics Lab, Department of Biotechnology, Jamia Millia Islamia, 25, New Delhi, India.
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Pischke E, Barozzi F, Colina Blanco AE, Kerl CF, Planer-Friedrich B, Clemens S. Dimethylmonothioarsenate Is Highly Toxic for Plants and Readily Translocated to Shoots. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:10072-10083. [PMID: 35759640 DOI: 10.1021/acs.est.2c01206] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Arsenic is one of the most relevant environmental pollutants and human health threats. Several arsenic species occur in soil pore waters. Recently, it was discovered that these include inorganic and organic thioarsenates. Among the latter, dimethylmonothioarsenate (DMMTA) is of particular concern because in mammalian cells, its toxicity was found to exceed even that of arsenite. We investigated DMMTA toxicity for plants in experiments with Arabidopsis thaliana and indeed observed stronger growth inhibition than with arsenite. DMMTA caused a specific, localized deformation of root epidermal cells. Toxicity mechanisms apparently differ from those of arsenite since no accumulation of reactive oxygen species was observed in DMMTA-exposed root tips. Also, there was no contribution of the phytochelatin pathway to the DMMTA detoxification as indicated by exposure experiments with respective mutants and thiol profiling. RNA-seq analysis found strong transcriptome changes dominated by stress-responsive genes. DMMTA was taken up more efficiently than the methylated oxyarsenate dimethylarsenate and highly mobile within plants as revealed by speciation analysis. Shoots showed clear indications of DMMTA toxicity such as anthocyanin accumulation and a decrease in chlorophyll and carotenoid levels. The toxicity and efficient translocation of DMMTA within plants raise important food safety issues.
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Affiliation(s)
- Erik Pischke
- Plant Physiology, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
| | - Fabrizio Barozzi
- Plant Physiology, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
| | - Andrea E Colina Blanco
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
| | - Carolin F Kerl
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
| | - Britta Planer-Friedrich
- Environmental Geochemistry, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
| | - Stephan Clemens
- Plant Physiology, Bayreuth Center for Ecology and Environmental Research (BayCEER), University of Bayreuth, D-95440 Bayreuth, Germany
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Transcriptomic and Metabolomic Analysis Unravels the Molecular Regulatory Mechanism of Fatty Acid Biosynthesis in Styrax tonkinensis Seeds under Methyl Jasmonate Treatment. Int J Mol Sci 2022; 23:ijms23116190. [PMID: 35682867 PMCID: PMC9181076 DOI: 10.3390/ijms23116190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 05/27/2022] [Accepted: 05/30/2022] [Indexed: 12/04/2022] Open
Abstract
As the germ of a highly productive oil tree species, Styrax tonkinensis seeds have great potential to produce biodiesel and they have marvelous fatty acid (FA) composition. In order to explore the molecular regulatory mechanism of FA biosynthesis in S. tonkinensis seeds after methyl jasmonate (MJ) application, transcriptomic and metabolomic techniques were adopted so as to dissect the genes that are related to FA biosynthesis and their expression levels, as well as to discover the major FA concentration and composition. The results revealed that 200 μmol/L of MJ (MJ200) increased the crude fat (CF) mass fraction and generated the greatest impact on CF accumulation at 70 days after flowering. Twenty FAs were identified, among which palmitic acid, oleic acid, linoleic acid and linolenic acid were the major FAs, and the presence of MJ200 affected their concentrations variously. MJ200 could enhance FA accumulation through elevating the activity of enzymes that are related to FA synthesis. The number of differentially expressed genes increased with the seeds’ development in general. Fatty acid biosynthesis, the biosynthesis of unsaturated fatty acid, fatty acid elongation and glycerolipid metabolism were the main lipid metabolism pathways that were found to be involved. The changes in the expression levels of EAR, KAR, accA, accB and SAD2 were consistent with the changes in the CF mass fraction, indicating that they are important genes in the FA biosynthesis of S. tonkinensis seeds and that MJ200 promoted their expression levels. In addition, bZIP (which was screened by weighted correlation network analysis) also created significant impacts on FA biosynthesis. Our research has provided a basis for further studies on FA biosynthesis that is regulated by MJ200 at the molecular level and has helped to clarify the functions of key genes in the FA metabolic pathway in S. tonkinensis seeds.
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Ali S, Tyagi A, Mushtaq M, Al-Mahmoudi H, Bae H. Harnessing plant microbiome for mitigating arsenic toxicity in sustainable agriculture. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 300:118940. [PMID: 35122918 DOI: 10.1016/j.envpol.2022.118940] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 01/08/2022] [Accepted: 01/30/2022] [Indexed: 06/14/2023]
Abstract
Heavy metal toxicity has become an impediment to agricultural productivity, which presents major human health concerns in terms of food safety. Among them, arsenic (As) a non-essential heavy metal has gained worldwide attention because of its noxious effects on agriculture and public health. The increasing rate of global warming and anthropogenic activities have promptly exacerbated As levels in the agricultural soil, thereby causing adverse effects to crop genetic and phenotypic traits and rendering them vulnerable to other stresses. Conventional breeding and transgenic approaches have been widely adapted for producing heavy metal resilient crops; however, they are time-consuming and labor-intensive. Hence, finding new mitigation strategies for As toxicity would be a game-changer for sustainable agriculture. One such promising approach is harnessing plant microbiome in the era of 'omics' which is gaining prominence in recent years. The use of plant microbiome and their cocktails to combat As metal toxicity has gained widespread attention, because of their ability to metabolize toxic elements and offer an array of perquisites to host plants such as increased nutrient availability, stress resilience, soil fertility, and yield. A comprehensive understanding of below-ground plant-microbiome interactions and their underlying molecular mechanisms in exhibiting resilience towards As toxicity will help in identifying elite microbial communities for As mitigation. In this review, we have discussed the effect of As, their accumulation, transportation, signaling, and detoxification in plants. We have also discussed the role of the plant microbiome in mitigating As toxicity which has become an intriguing research frontier in phytoremediation. This review also provides insights on the advancements in constructing the beneficial synthetic microbial communities (SynComs) using microbiome engineering that will facilitate the development of the most advanced As remedial tool kit in sustainable agriculture.
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Affiliation(s)
- Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | - Anshika Tyagi
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea
| | | | - Henda Al-Mahmoudi
- Directorate of Programs, International Center for Biosaline Agriculture, Dubai, United Arab Emirates
| | - Hanhong Bae
- Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk, 38541, Republic of Korea.
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Tiwari M, Kidwai M, Dutta P, Narayan S, Gautam N, Chawda K, Shirke PA, Mishra AK, Chakrabarty D. A tau class glutathione-S-transferase (OsGSTU5) confers tolerance against arsenic toxicity in rice by accumulating more arsenic in root. JOURNAL OF HAZARDOUS MATERIALS 2022; 426:128100. [PMID: 34954436 DOI: 10.1016/j.jhazmat.2021.128100] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Revised: 09/03/2021] [Accepted: 12/15/2021] [Indexed: 05/27/2023]
Abstract
Arsenic (As) considered as one of the hazardous metalloid that hampers various physiological activities in rice. To study the mechanism of As tolerance in rice, one differentially expressed tau class glutathione-S-transferase (OsGSTU5) has been selected and transgenic rice plants with knockdown (KD) and overexpressing (OE) OsGSTU5 were generated. Our results suggested that KD lines became less tolerant to As stress than WT plants, while OE lines showed enhanced tolerance to As. Under As toxicity, OE and KD lines showed enhanced and reduced antioxidant activities such as, SOD, PRX and catalase, respectively indicating its role in ROS homeostasis. In addition, higher malondialdehyde content, poor photosynthetic parameters and higher reactive oxygen species (ROS) in KD plant, suggests that knockdown of OsGSTU5 renders KD plants more susceptible to oxidative damage. Also, the relative expression profile of various transporters such as OsABCC1 (As sequestration), Lsi2 and Lsi6 (As translocaters) and GSH dependent activity of GSTU5 suggests that GSTU5 might help in chelation of As with GSH and sequester it into the root vacuole using OsABCC1 transporter and thus limits the upward translocation of As towards shoot. This study suggests the importance of GSTU5 as a good target to improve the As tolerance in rice.
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Affiliation(s)
- Madhu Tiwari
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi 221005, India
| | - Maria Kidwai
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - Prasanna Dutta
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Shiv Narayan
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Plant Physiology Laboratory, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - Neelam Gautam
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Khushboo Chawda
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Pramod Arvind Shirke
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India; Plant Physiology Laboratory, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - Arun Kumar Mishra
- Laboratory of Microbial Genetics, Department of Botany, Banaras Hindu University, Varanasi 221005, India
| | - Debasis Chakrabarty
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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11
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Lu C, Chen X, Yan Y, Ren X, Wang X, Peng B, Cai Y, Liang Q, Xu Z, Peng J. Aberrant Expression of ADARB1 Facilitates Temozolomide Chemoresistance and Immune Infiltration in Glioblastoma. Front Pharmacol 2022; 13:768743. [PMID: 35177985 PMCID: PMC8844449 DOI: 10.3389/fphar.2022.768743] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2021] [Accepted: 01/10/2022] [Indexed: 02/05/2023] Open
Abstract
Chemoresistance, especially temozolomide (TMZ) resistance, is a major clinical challenge in the treatment of glioblastoma (GBM). Exploring the mechanisms of TMZ resistance could help us identify effective therapies. Adenosine deaminases acting on RNA (ADARs) are very important in RNA modification through regulating the A-to-I RNA editing. Recent studies have shown that ADARs regulate multiple neurotransmitter receptors, which have been linked with the occurrence and progress of GBM. Here, data from several bioinformatics databases demonstrated that adenosine deaminase RNA specific B1 (ADARB1), also named ADAR2, was upregulated in both GBM tissues and cells, and had the prognostic value in GBM patients. Moreover, ADARB1 was found to be involved in AKT-mediated TMZ resistance in GBM cells. The KEGG analysis of ADARB1-associated co-expressed genes showed that ADARB1 was potentially involved in the mitochondrial respiratory chain complex. TISIDB and GEPIA databases were further used to analyze the role of ADARB1 in tumor-immune system interactions in GBM. These findings deepened our understanding of the function of ADARB1 in tumorigenesis and therapeutic response in GBM.
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Affiliation(s)
- Can Lu
- Department of Pathology, Xiangya Hospital, Central South University, Changsha, China
| | - Xi Chen
- Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, China
| | - Yuanliang Yan
- Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, China
| | - Xinxin Ren
- Key Laboratory of Molecular Radiation Oncology of Hunan Province, Xiangya Hospital, Central South University, Changsha, China
| | - Xiang Wang
- Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, China
| | - Bi Peng
- Department of Pathology, Xiangya Hospital, Central South University, Changsha, China
| | - Yuan Cai
- Department of Pathology, Xiangya Hospital, Central South University, Changsha, China
| | - Qiuju Liang
- Department of Pharmacy, Xiangya Hospital, Central South University, Changsha, China
| | - Zhijie Xu
- Department of Pathology, Xiangya Hospital, Central South University, Changsha, China.,Department of Pathology, Xiangya Changde Hospital, Changde, China.,National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, China
| | - Jinwu Peng
- Department of Pathology, Xiangya Hospital, Central South University, Changsha, China.,Department of Pathology, Xiangya Changde Hospital, Changde, China
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12
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Moulick D, Samanta S, Sarkar S, Mukherjee A, Pattnaik BK, Saha S, Awasthi JP, Bhowmick S, Ghosh D, Samal AC, Mahanta S, Mazumder MK, Choudhury S, Bramhachari K, Biswas JK, Santra SC. Arsenic contamination, impact and mitigation strategies in rice agro-environment: An inclusive insight. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 800:149477. [PMID: 34426348 DOI: 10.1016/j.scitotenv.2021.149477] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Revised: 07/15/2021] [Accepted: 08/01/2021] [Indexed: 06/13/2023]
Abstract
Arsenic (As) contamination and its adverse consequences on rice agroecosystem are well known. Rice has the credit to feed more than 50% of the world population but concurrently, rice accumulates a substantial amount of As, thereby compromising food security. The gravity of the situation lays in the fact that the population in theAs uncontaminated areas may be accidentally exposed to toxic levels of As from rice consumption. In this review, we are trying to summarize the documents on the impact of As contamination and phytotoxicity in past two decades. The unique feature of this attempt is wide spectrum coverages of topics, and that makes it truly an interdisciplinary review. Aprat from the behaviour of As in rice field soil, we have documented the cellular and molecular response of rice plant upon exposure to As. The potential of various mitigation strategies with particular emphasis on using biochar, seed priming technology, irrigation management, transgenic variety development and other agronomic methods have been critically explored. The review attempts to give a comprehensive and multidiciplinary insight into the behaviour of As in Paddy -Water - Soil - Plate prospective from molecular to post-harvest phase. From the comprehensive literature review, we may conclude that considerable emphasis on rice grain, nutritional and anti-nutritional components, and grain quality traits under arsenic stress condition is yet to be given. Besides these, some emerging mitigation options like seed priming technology, adoption of nanotechnological strategies, applications of biochar should be fortified in large scale without interfering with the proper use of biodiversity.
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Affiliation(s)
- Debojyoti Moulick
- Plant Stress Biology and Metabolomics Laboratory Central Instrumentation Laboratory (CIL), Assam University, Silchar 788 011, India.
| | - Suman Samanta
- Division of Agricultural Physics, Indian Agricultural Research Institute, Pusa, New Delhi 110012, India.
| | - Sukamal Sarkar
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia 741252, West Bengal, India.
| | - Arkabanee Mukherjee
- Indian Institute of Tropical Meteorology, Dr Homi Bhabha Rd, Panchawati, Pashan, Pune, Maharashtra 411008, India.
| | - Binaya Kumar Pattnaik
- Symbiosis Institute of Geoinformatics, Symbiosis International (Deemed University), Pune, Maharashtra, India.
| | - Saikat Saha
- Nadia Krishi Vigyan Kendra, Bidhan Chandra Krishi Viswavidyalaya, Gayeshpur, Nadia 741234, West Bengal, India.
| | - Jay Prakash Awasthi
- Department of Botany, Government College Lamta, Balaghat, Madhya Pradesh 481551, India.
| | - Subhamoy Bhowmick
- Kolkata Zonal Center, CSIR-National Environmental Engineering Research Institute (NEERI), Kolkata, West Bengal 700107, India.
| | - Dibakar Ghosh
- Division of Agronomy, ICAR-Indian Institute of Water Management, Bhubaneswar 751023, Odisha, India.
| | - Alok Chandra Samal
- Department of Environmental Science, University of Kalyani, Nadia, West Bengal, India.
| | - Subrata Mahanta
- Department of Chemistry, NIT Jamshedpur, Adityapur, Jamshedpur, Jharkhand 831014, India.
| | | | - Shuvasish Choudhury
- Plant Stress Biology and Metabolomics Laboratory Central Instrumentation Laboratory (CIL), Assam University, Silchar 788 011, India.
| | - Koushik Bramhachari
- Department of Agronomy, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia 741252, West Bengal, India.
| | - Jayanta Kumar Biswas
- Department of Ecological Studies and International Centre for Ecological Engineering, University of Kalyani, Kalyani, West Bengal, India.
| | - Subhas Chandra Santra
- Department of Environmental Science, University of Kalyani, Nadia, West Bengal, India.
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13
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Zhang J, Hamza A, Xie Z, Hussain S, Brestic M, Tahir MA, Ulhassan Z, Yu M, Allakhverdiev SI, Shabala S. Arsenic transport and interaction with plant metabolism: Clues for improving agricultural productivity and food safety. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 290:117987. [PMID: 34425370 DOI: 10.1016/j.envpol.2021.117987] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 07/12/2021] [Accepted: 08/14/2021] [Indexed: 05/13/2023]
Abstract
Arsenic (As) is a ubiquitous metalloid that is highly toxic to all living organisms. When grown in As-contaminated soils, plants may accumulate significant amounts of As in the grains or edible shoot parts which then enter a food chain. Plant growth and development per se are also both affected by arsenic. These effects are traditionally attributed to As-induced accumulation of reactive oxygen species (ROS) and a consequent lipid peroxidation and damage to cellular membranes. However, this view is oversimplified, as As exposure have a major impact on many metabolic processes in plants, including availability of essential nutrients, photosynthesis, carbohydrate metabolism, lipid metabolism, protein metabolism, and sulfur metabolism. This review is aimed to fill this gap in the knowledge. In addition, the molecular basis of arsenic uptake and transport in plants and prospects of creating low As-accumulating crop species, for both agricultural productivity and food safety, are discussed.
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Affiliation(s)
- Jie Zhang
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
| | - Ameer Hamza
- School of Environment Science and Engineering, China University of Geoscience, Wuhan, 430074, China; College of Agriculture, University of Sargodha, Sargodha, 40100, Pakistan
| | - Zuoming Xie
- School of Environment Science and Engineering, China University of Geoscience, Wuhan, 430074, China
| | - Sajad Hussain
- College of Agronomy, Sichuan Agricultural University, 211-Huimin Road, Wenjiang, Chengdu, 611130, China.
| | - Marian Brestic
- Department of Plant Physiology, Slovak University of Agriculture, Nitra, Slovak Republic
| | - Mukkram Ali Tahir
- College of Agriculture, University of Sargodha, Sargodha, 40100, Pakistan
| | - Zaid Ulhassan
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou, 310058, China
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China
| | - Suleyman I Allakhverdiev
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China; K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya St. 35, Moscow, 127276, Russia
| | - Sergey Shabala
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, 528000, China; Tasmanian Institute of Agriculture, University of Tasmania, Hobart, Tas7001, Australia.
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14
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G Meselhy A, Sharma S, Guo Z, Singh G, Yuan H, Tripathi RD, Xing B, Musante C, White JC, Dhankher OP. Nanoscale Sulfur Improves Plant Growth and Reduces Arsenic Toxicity and Accumulation in Rice ( Oryza sativa L.). ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:13490-13503. [PMID: 34570468 DOI: 10.1021/acs.est.1c05495] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Rice is known to accumulate arsenic (As) in its grains, posing serious health concerns for billions of people globally. We studied the effect of nanoscale sulfur (NS) on rice seedlings and mature plants under As stress. NS application caused a 40% increase in seedling biomass and a 26% increase in seed yield of mature plants compared to untreated control plants. AsIII exposure caused severe toxicity to rice; however, coexposure of plants to AsIII and NS alleviated As toxicity, and growth was significantly improved. Rice seedlings treated with AsIII + NS produced 159 and 248% more shoot and root biomass, respectively, compared to plants exposed to AsIII alone. Further, AsIII + NS-treated seedlings accumulated 32 and 11% less As in root and shoot tissues, respectively, than the AsIII-alone treatment. Mature plants treated with AsIII + NS produced 76, 110, and 108% more dry shoot biomass, seed number, and seed yield, respectively, and accumulated 69, 38, 18, and 54% less total As in the root, shoot, flag leaves, and grains, respectively, compared to AsIII-alone-treated plants. A similar trend was observed in seedlings treated with AsV and NS. The ability of sulfur (S) to alleviate As toxicity and accumulation is clearly size dependent as NS could effectively reduce bioavailability and accumulation of As in rice via modulating the gene expression activity of As transport, S assimilatory, and glutathione synthesis pathways to facilitate AsIII detoxification. These results have significant environmental implications as NS application in agriculture has the potential to decrease As in the food chain and simultaneously enable crops to grow and produce higher yields on marginal and contaminated lands.
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Affiliation(s)
- Ahmed G Meselhy
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
- Department of Biotechnology, Faculty of Agriculture, Al-Azhar University, Cairo 11651, Egypt
| | - Sudhir Sharma
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Zhi Guo
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences/ Key Laboratory for Crop and Animal Integrated Farming, Ministry of Agriculture, Nanjing 210014, China
| | - Gurpal Singh
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Haiyan Yuan
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China
| | - Rudra D Tripathi
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, Uttar Pradesh, India
| | - Baoshan Xing
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
| | - Craig Musante
- The Connecticut Agricultural Experiment Station, New Haven, Connecticut 06511, United States
| | - Jason C White
- The Connecticut Agricultural Experiment Station, New Haven, Connecticut 06511, United States
| | - Om Parkash Dhankher
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, Massachusetts 01003, United States
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15
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Ahmed T, Noman M, Rizwan M, Ali S, Shahid MS, Li B. Recent progress on the heavy metals ameliorating potential of engineered nanomaterials in rice paddy: a comprehensive outlook on global food safety with nanotoxicitiy issues. Crit Rev Food Sci Nutr 2021; 63:2672-2686. [PMID: 34554039 DOI: 10.1080/10408398.2021.1979931] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Soil contamination with toxic heavy metals (HMs) poses a serious threat to global food safety, soil ecosystem and human health. The rapid industrialization, urbanization and extensive application of agrochemicals on arable land have led to paddy soil pollution worldwide. Rice plants easily accumulate toxic HMs from contaminated agricultural soils, which ultimately accumulated in grains and enters the food chain. Although, physical and chemical remediation techniques have been used for the treatment of HMs-contaminated soils, however, they also have many drawbacks, such as toxicity, capital investment and environmental-associated hazards. Recently, engineered nanomaterials (ENMs) have gained substantial attention owing to their promising environmental remediation applications. Numerous studies have revealed the use of ENMs for reclamation of toxic HMs from contaminated environment. This review mainly focuses on HMs toxicity in paddy soils along with potential health risks to humans. It also provides a critical outlook on the recent advances and future perspectives of nanoremediation strategies. Additionally, we will also propose the interacting mechanism of HMs-ENMs to counteract metal-associated phytotoxicities in rice plants to achieve global food security and environmental safety.
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Affiliation(s)
- Temoor Ahmed
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Muhammad Noman
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University Faisalabad, Faisalabad, Pakistan
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University Faisalabad, Faisalabad, Pakistan
| | - Muhammad Shafiq Shahid
- Department of Plant Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, Muscat, Oman
| | - Bin Li
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
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16
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Khan MIR, Chopra P, Chhillar H, Ahanger MA, Hussain SJ, Maheshwari C. Regulatory hubs and strategies for improving heavy metal tolerance in plants: Chemical messengers, omics and genetic engineering. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 164:260-278. [PMID: 34020167 DOI: 10.1016/j.plaphy.2021.05.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Accepted: 05/03/2021] [Indexed: 05/28/2023]
Abstract
Heavy metal (HM) accumulation in the agricultural soil and its toxicity is a major threat for plant growth and development. HMs disrupt functional integrity of the plants, induces altered phenological and physiological responses and slashes down qualitative crop yield. Chemical messengers such as phytohormones, plant growth regulators and gasotransmitters play a crucial role in regulating plant growth and development under metal toxicity in plants. Understanding the intricate network of these chemical messengers as well as interactions of genes/metabolites/proteins associated with HM toxicity in plants is necessary for deciphering insights into the regulatory circuit involved in HM tolerance. The present review describes (a) the role of chemical messengers in HM-induced toxicity mitigation, (b) possible crosstalk between phytohormones and other signaling cascades involved in plants HM tolerance and (c) the recent advancements in biotechnological interventions including genetic engineering, genome editing and omics approaches to provide a step ahead in making of improved plant against HM toxicities.
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Affiliation(s)
| | | | | | | | - Sofi Javed Hussain
- Department of Botany, Government Degree College, Kokernag, Jammu & Kashmir, India
| | - Chirag Maheshwari
- Agricultural Energy and Power Division, ICAR-Central Institute of Agricultural Engineering, Bhopal, India
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17
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Wu X, Hu J, Wu F, Zhang X, Wang B, Yang Y, Shen G, Liu J, Tao S, Wang X. Application of TiO 2 nanoparticles to reduce bioaccumulation of arsenic in rice seedlings (Oryza sativa L.): A mechanistic study. JOURNAL OF HAZARDOUS MATERIALS 2021; 405:124047. [PMID: 33153781 DOI: 10.1016/j.jhazmat.2020.124047] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Revised: 09/16/2020] [Accepted: 09/18/2020] [Indexed: 05/23/2023]
Abstract
The possible application of TiO2 nanoparticles (nano-TiO2) to alleviate arsenic bioaccumulation in rice seedlings and such a functioning with their crystalline structure were investigated. Specifically, nano-TiO2 with anatase and rutile structures and the bulk TiO2 at 0, 10, 100, and 1000 mg/L were amended to the hydroponic exposure systems with arsenic concentration at 1 mg/L, and the plant was exposed for 7 days. Our findings indicated that nano-TiO2 significantly reduced arsenic bioaccumulation in rice seedlings by 40-90% via strong sorption process, but their growth was not affected. Nano-TiO2 amendment notably alleviated oxidative stress resulting from arsenic exposure. Without nano-TiO2 amendment, the iron plaque on root surfaces served as a strong barrier to inhibit arsenic uptake by rice seedlings. Interestingly, nano-TiO2 amendment significantly decreased the iron plaque amount by 50-63% and weakened the arsenic retention in this barrier by 47-99%, further verifying the overwhelming superiority of nano-TiO2 in inhibiting arsenic uptake by rice seedlings. Rutile nano-TiO2 (NRT) at 1000 mg/L presented to be a promising candidate for controlling arsenic uptake by the exposed rice seedlings, with no significant oxidative stress by the amended nano-TiO2, thereby mitigating health risk of arsenic to humans via food chain.
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Affiliation(s)
- Xinyi Wu
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Jing Hu
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Fan Wu
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Xinyu Zhang
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Bin Wang
- Department of Epidemiology and Biostatistics, School of Public Health, Peking University, Beijing 100191, China
| | - Yu Yang
- Department of Civil and Environmental Engineering, University of Nevada, Reno, NV 89557, USA
| | - Guofeng Shen
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Junfeng Liu
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Shu Tao
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Xilong Wang
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
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18
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Norton GJ, Travis A, Ruang-areerate P, Nicol GW, Adeosun AA, Hossain M, Islam MR, Douglas A, Price AH. Genetic loci regulating cadmium content in rice grains. EUPHYTICA: NETHERLANDS JOURNAL OF PLANT BREEDING 2021; 217:35. [PMID: 33627887 PMCID: PMC7875855 DOI: 10.1007/s10681-020-02752-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
It has been estimated that up to 90% of human exposure to cadmium is through food, and that cadmium within rice grains can be a major contributor to that dietary source. In this study genome wide association mapping was conducted on the Bengal and Assam Aus Panel (BAAP) of rice to identify quantitative trait loci and candidate genes for lowering grain cadmium. Field experiments were conducted over two years under two different irrigation systems: continually flooded and alternate wetting and drying (AWD). There was significant effects of water treatment, genotype, and genotype by water treatment interaction. Importantly, AWD increased grain cadmium, on average, by 49.6% and 108.8% in year 1 and 2 respectively. There was between 4.6 and 28 fold variation in cadmium concentration. A total of 58 QTLs were detected but no loci are clearly specific to one water regime despite approximately 20% of variation attributable to genotype by water regime interaction. A number of QTLs were consistent across most water treatments and years. These included QTLs on chromosome 7 (7.23-7.61, 8.93-9.04, and 29.12-29.14 Mbp), chromosome 5 (8.66-8.72 Mbp), and chromosome 9 (11.46-11.64 Mbp). Further analysis of the loci on chromosome 7 (8.93-9.04 Mbp), identified the candidate gene OsNRAMP1, where cultivars with a deletion upstream of the gene had higher concentrations of cadmium compared to the cultivars that did not have the deletion. The distribution of alleles within the BAAP suggest this QTL is easily detected in this population because it is composed of aus cultivars. Local genome cluster analysis suggest high Cd alleles are uncommon, but should be avoided in breeding. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at (10.1007/s10681-020-02752-1).
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Affiliation(s)
- Gareth J. Norton
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - Anthony Travis
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - Panthita Ruang-areerate
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
- National Omics Center, National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120 Thailand
| | - Graeme W. Nicol
- Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, 36 avenue Guy de Collongue, 69134 Ecully Cedex, France
| | - Ayotunde A. Adeosun
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - Mahmud Hossain
- Department of Soil Science, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - M. Rafiq Islam
- Department of Soil Science, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - Alex Douglas
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - Adam H. Price
- School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
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19
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Seth S, Debnath S, Chakraborty N. In silico analysis of functional linkage among arsenic induced MATE genes in rice. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2020; 26:e00390. [PMID: 32435604 PMCID: PMC7231838 DOI: 10.1016/j.btre.2019.e00390] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 10/21/2019] [Accepted: 10/21/2019] [Indexed: 10/27/2022]
Abstract
MATE genes play an important role in cellular detoxification processes. Nine MATE genes were identified by a transcriptomics study previously. Candidate gene prioritization was done where 29 new genes were found to interact with 09 guide genes. Therefore, a total of 38 genes were analyzed here to predict a concise model by gene prioritization study. Those genes were analyzed further in Rice Interactions Viewer programme, and based on high ICV, 10 new genes were found to interact among themselves at protein level. Surprisingly, only 05 genes were found to play a key role at protein level. These 15 genes were analyzed for their interaction with soil available inorganic arsenic species. Maximum expression levels were found mostly at young inflorescence and seed development stage for those genes. So, these genes may have a direct role in arsenic sequestration from cells and thereby providing safety to the developing embryo within the seed.
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Affiliation(s)
- Snigdhamayee Seth
- Department of Genetics & Plant Breeding, Palli Siksha Bhavana (Institute of Agriculture), Visva-Bharati, Sriniketan, 731236, India
| | - Sandip Debnath
- Department of Genetics & Plant Breeding, Palli Siksha Bhavana (Institute of Agriculture), Visva-Bharati, Sriniketan, 731236, India
| | - N.R. Chakraborty
- Department of Genetics & Plant Breeding, Palli Siksha Bhavana (Institute of Agriculture), Visva-Bharati, Sriniketan, 731236, India
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20
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Chauhan R, Awasthi S, Indoliya Y, Chauhan AS, Mishra S, Agrawal L, Srivastava S, Dwivedi S, Singh PC, Mallick S, Chauhan PS, Pande V, Chakrabarty D, Tripathi RD. Transcriptome and proteome analyses reveal selenium mediated amelioration of arsenic toxicity in rice (Oryza sativa L.). JOURNAL OF HAZARDOUS MATERIALS 2020; 390:122122. [PMID: 32006842 DOI: 10.1016/j.jhazmat.2020.122122] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Revised: 01/01/2020] [Accepted: 01/14/2020] [Indexed: 05/19/2023]
Abstract
Arsenic (As), a chronic poison and non-threshold carcinogen, is a food chain contaminant in rice, posing yield losses as well as serious health risks. Selenium (Se), a trace element, is a known antagonist of As toxicity. In present study, RNA seq. and proteome profiling, along with morphological analyses were performed to explore molecular cross-talk involved in Se mediated As stress amelioration. The repair of As induced structural deformities involving disintegration of cell wall and membranes were observed upon Se supplementation. The expression of As transporter genes viz., NIP1;1, NIP2;1, ABCG5, NRAMP1, NRAMP5, TIP2;2 as well as sulfate transporters, SULTR3;1 and SULTR3;6, were higher in As + Se compared to As alone exposure, which resulted in reduced As accumulation and toxicity. The higher expression of regulatory elements like AUX/IAA, WRKY and MYB TFs during As + Se exposure was also observed. The up-regulation of GST, PRX and GRX during As + Se exposure confirmed the amelioration of As induced oxidative stress. The abundance of proteins involved in photosynthesis, energy metabolism, transport, signaling and ROS homeostasis were found higher in As + Se than in As alone exposure. Overall, present study identified Se responsive pathways, genes and proteins involved to cope-up with As toxicity in rice.
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Affiliation(s)
- Reshu Chauhan
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Department of Biotechnology, Kumaun University, Bhimtal, Nainital, Uttarakhand, India
| | - Surabhi Awasthi
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005, India
| | - Yuvraj Indoliya
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Abhishek Singh Chauhan
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Shashank Mishra
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India
| | - Lalit Agrawal
- Department of Agriculture and Allied Science, Doon Business School, Dehradun, Uttarakhand, India
| | - Sudhakar Srivastava
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005, India
| | - Sanjay Dwivedi
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Poonam C Singh
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Shekhar Mallick
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Puneet Singh Chauhan
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Veena Pande
- Department of Biotechnology, Kumaun University, Bhimtal, Nainital, Uttarakhand, India
| | - Debasis Chakrabarty
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Rudra Deo Tripathi
- CSIR - National Botanical Research Institute, Council of Scientific and Industrial Research, Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India.
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Kumar A, Dubey AK, Kumar V, Ansari MA, Narayan S, Kumar S, Pandey V, Shirke PA, Pande V, Sanyal I. Over-expression of chickpea glutaredoxin (CaGrx) provides tolerance to heavy metals by reducing metal accumulation and improved physiological and antioxidant defence system. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 192:110252. [PMID: 32014725 DOI: 10.1016/j.ecoenv.2020.110252] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2019] [Revised: 01/23/2020] [Accepted: 01/24/2020] [Indexed: 06/10/2023]
Abstract
Glutaredoxins (Grxs) are small multifunctional redox proteins. Grxs have glutathione-dependent oxidoreductase activity in the presence of glutathione reductase and NADPH. The role of Grxs is well studied in heavy metal tolerance in prokaryotic and mammalian systems but not in plant genera. In the present study, a chickpea glutaredoxin (CaGrx) gene (LOC101493651) has been investigated against metal stress based on its primary screening in chickpea which revealed higher up-regulation of CaGrx gene under various heavy metals (AsIII-25 μM, AsV-250 μM, Cr(VI)-300 μM, and Cd-500 μM) stress. This CaGrx gene was overexpressed in Arabidopsis thaliana and investigated various biochemical and physiological performances under each metal stress. Transgenic plants showed significant up-regulation of the CaGrx gene during qRT-PCR analysis as well as longer roots, higher seed germination, and survival efficiency during each metal stress. The levels of stress markers, TBARS, H2O2, and electrolyte leakage were found to be less in transgenic lines as compared to WT revealed less toxicity in transgenics. The total accumulation of AsIII, AsV, and Cr(VI) were significantly reduced in all transgenic lines except Cd, which was slightly reduced. The physiological parameters such as net photosynthetic rate (PN), stomatal conductance (gs), transpiration (E), water use efficiency (WUE), photochemical quenching (qP), and electron transport rate (ETR), were maintained in transgenic lines during metal stress. Various antioxidant enzymes such as glutaredoxin (GRX), glutathione reductase (GR), glutathione peroxidase (GPX), glutathione-S-transferase (GST), ascorbate peroxidase (APX), superoxide dismutase (SOD), catalase (CAT), dehydroascorbate reductase (DHAR), monodehydroascorbate reductase (MDHAR), antioxidant molecules (ascorbate, GSH) and stress-responsive amino acids (proline and cysteine) levels were significantly increased in transgenic lines which provide metal tolerance. The outcome of this study strongly indicates that the CaGrx gene participates in the moderation of metal stress in Arabidopsis, which can be utilized in biotechnological interventions to overcome heavy metal stress conditions in different crops.
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Affiliation(s)
- Anil Kumar
- CSIR-National Botanical Research Institute, Lucknow, India; Department of Biotechnology, Kumaun University, Bhimtal Campus, Nainital, India
| | - Arvind Kumar Dubey
- CSIR-National Botanical Research Institute, Lucknow, India; Department of Biotechnology, Kumaun University, Bhimtal Campus, Nainital, India
| | - Varun Kumar
- CSIR-National Botanical Research Institute, Lucknow, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Mohd Akram Ansari
- CSIR-National Botanical Research Institute, Lucknow, India; Department of Biotechnology, Kumaun University, Bhimtal Campus, Nainital, India
| | - Shiv Narayan
- CSIR-National Botanical Research Institute, Lucknow, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Sanoj Kumar
- CSIR-National Botanical Research Institute, Lucknow, India
| | - Vivek Pandey
- CSIR-National Botanical Research Institute, Lucknow, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Pramod Arvind Shirke
- CSIR-National Botanical Research Institute, Lucknow, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Veena Pande
- Department of Biotechnology, Kumaun University, Bhimtal Campus, Nainital, India
| | - Indraneel Sanyal
- CSIR-National Botanical Research Institute, Lucknow, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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22
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Frouin J, Labeyrie A, Boisnard A, Sacchi GA, Ahmadi N. Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains. PLoS One 2019; 14:e0217516. [PMID: 31194746 PMCID: PMC6563978 DOI: 10.1371/journal.pone.0217516] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Accepted: 05/13/2019] [Indexed: 12/28/2022] Open
Abstract
The high concentration of arsenic (As) in rice grains, in a large proportion of the rice growing areas, is a critical issue. This study explores the feasibility of conventional (QTL-based) marker-assisted selection and genomic selection to improve the ability of rice to prevent As uptake and accumulation in the edible grains. A japonica diversity panel (RP) of 228 accessions phenotyped for As concentration in the flag leaf (FL-As) and in the dehulled grain (CG-As), and genotyped at 22,370 SNP loci, was used to map QTLs by association analysis (GWAS) and to train genomic prediction models. Similar phenotypic and genotypic data from 95 advanced breeding lines (VP) with japonica genetic backgrounds, was used to validate related QTLs mapped in the RP through GWAS and to evaluate the predictive ability of across populations (RP-VP) genomic estimate of breeding value (GEBV) for As exclusion. Several QTLs for FL-As and CG-As with a low-medium individual effect were detected in the RP, of which some colocalized with known QTLs and candidate genes. However, less than 10% of those QTLs could be validated in the VP without loosening colocalization parameters. Conversely, the average predictive ability of across populations GEBV was rather high, 0.43 for FL-As and 0.48 for CG-As, ensuring genetic gains per time unit close to phenotypic selection. The implications of the limited robustness of the GWAS results and the rather high predictive ability of genomic prediction are discussed for breeding rice for significantly low arsenic uptake and accumulation in the edible grains.
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Affiliation(s)
- Julien Frouin
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | - Axel Labeyrie
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
| | | | | | - Nourollah Ahmadi
- CIRAD, UMR AGAP, Montpellier, France
- AGAP, Univ Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France
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23
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Tang Z, Xu M, Ito H, Cai J, Ma X, Qin J, Yu D, Meng Y. Deciphering the non-coding RNA-level response to arsenic stress in rice ( Oryza sativa). PLANT SIGNALING & BEHAVIOR 2019; 14:1629268. [PMID: 31187662 PMCID: PMC6768179 DOI: 10.1080/15592324.2019.1629268] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 05/27/2019] [Accepted: 06/03/2019] [Indexed: 05/26/2023]
Abstract
Arsenic (As) contamination in subsoil and groundwater is a big problem, especially in many South-East Asian countries. As a staple crop growing under flooded condition in these areas, rice (Oryza sativa L.) becomes a big threat to human health through the food chain since As is highly accumulated in grains. Thus, reducing As accumulation in rice through molecular breeding and identification of rice varieties with low As content are the pressing issues. However, the current understanding on the molecular mechanism of As stress response is still limited for rice. In this study, we performed a comprehensive search for the As-responsive small RNAs (sRNAs) of rice. Briefly, 4,762 and 18,152 sRNAs were identified to be highly activated under As stress in roots and shoots respectively, while 14,603 and 8,308 sRNAs were intensively repressed by As treatment in roots and shoots, respectively. A number of the As-responsive sRNAs found their loci on tRNAs, rRNAs or long non-coding RNAs (lncRNAs). Interestingly, these loci preferentially distributed on the 5' halves of the tRNA, rRNA or lncRNA precursors. Among the above-identified As-responsive sRNAs, 252 Argonaute 1 (AGO1)-enriched sRNAs were extracted for target identification, resulting in 200 pairs of sRNA-protein-coding target interactions. Many targets are functionally involved in the development, stress response, reproduction, or lipid metabolism. Additionally, 56 lncRNAs were discovered to be targeted by nine AGO1-enriched sRNAs, indicating the potential involvement of these lncRNAs in As signaling. Taken together, our results could expand the understanding on the non-coding RNA-mediated As stress response in rice.
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Affiliation(s)
- Zhonghai Tang
- College of Food Science and Technology, Hunan Agricultural University, Changsha, PR China
| | - Min Xu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, PR China
| | - Hidetaka Ito
- Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Jiahui Cai
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, PR China
| | - Xiaoxia Ma
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, PR China
| | - Jingping Qin
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, Hunan, PR China
| | - Dongliang Yu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, PR China
| | - Yijun Meng
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, PR China
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24
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Shri M, Singh PK, Kidwai M, Gautam N, Dubey S, Verma G, Chakrabarty D. Recent advances in arsenic metabolism in plants: current status, challenges and highlighted biotechnological intervention to reduce grain arsenic in rice. Metallomics 2019; 11:519-532. [PMID: 30672944 DOI: 10.1039/c8mt00320c] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Arsenic (As), classified as a “metalloid” element, is well known for its carcinogenicity and other toxic effects to humans.
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Affiliation(s)
- Manju Shri
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
| | - Pradyumna Kumar Singh
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
| | - Maria Kidwai
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | - Neelam Gautam
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
| | - Sonali Dubey
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
| | - Giti Verma
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | - Debasis Chakrabarty
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
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25
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Srivastava D, Verma G, Chauhan AS, Pande V, Chakrabarty D. Rice (Oryza sativa L.) tau class glutathione S-transferase (OsGSTU30) overexpression in Arabidopsis thaliana modulates a regulatory network leading to heavy metal and drought stress tolerance. Metallomics 2019; 11:375-389. [PMID: 30516767 DOI: 10.1039/c8mt00204e] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
OsGSTU30 increases the abiotic stress tolerance in plants either by its catalytic activity or by modulating the expression of stress responsive genes.
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Affiliation(s)
- Dipali Srivastava
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
- Department of Biotechnology
- Kumaun University
| | - Giti Verma
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | | | - Veena Pande
- Department of Biotechnology
- Kumaun University
- India
| | - Debasis Chakrabarty
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
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26
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Kumar S, Trivedi PK. Genomics of Arsenic Stress Response in Plants. SUSTAINABLE DEVELOPMENT AND BIODIVERSITY 2019. [DOI: 10.1007/978-3-319-91956-0_10] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
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27
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Dubey S, Shri M, Gupta A, Rani V, Chakrabarty D. Toxicity and detoxification of heavy metals during plant growth and metabolism. ENVIRONMENTAL CHEMISTRY LETTERS 2018; 16:1169-1192. [DOI: 10.1007/s10311-018-0741-8] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 04/19/2018] [Indexed: 06/27/2023]
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28
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Kumari P, Rastogi A, Shukla A, Srivastava S, Yadav S. Prospects of genetic engineering utilizing potential genes for regulating arsenic accumulation in plants. CHEMOSPHERE 2018; 211:397-406. [PMID: 30077936 DOI: 10.1016/j.chemosphere.2018.07.152] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Revised: 07/23/2018] [Accepted: 07/24/2018] [Indexed: 05/24/2023]
Abstract
The rapid pace of industrial, agricultural and anthropogenic activities in the 20th century has resulted in contamination of heavy metals across the globe. Arsenic (As) is a ubiquitous, naturally occurring toxic metalloid, contaminating the soil and water and affecting human health in several countries. Several physicochemical methods exist for the cleanup of As contamination but these are expensive and disastrous to microbes and soil. Plant based remediation approaches are low cost and environmentally safe. Hence, extensive biochemical, molecular and genetic experiments have been conducted to understand plants' responses to As stress and have led to the identification of potential genes. The available knowledge needs to be utilized to either reduce As accumulation in crop plants (rice) or to enhance As levels in shoots of hyperaccumulators (Pteris vittata). Gene manipulation using biotechnological tools can be an effective approach to exploit the potential genes (plasmamembrane and vacuolar transporters, glutathione and phytochelatin biosynthetic enzymes, etc.) playing pivotal roles in uptake, translocation, transformation, complexation, and compartmentalization of As in plants. The transgenic plants with increased tolerance to As and altered (increased/decreased) As accumulation have been developed. The need, however, exists to design plants with altered expression of two or more genes for harmonizing various events (like arsenate reduction, arsenite complexation, sequestration and translocation) so as to achieve desirable reduction (crop plants) or increase (phytoremediator plants) in As content. This review sheds light on transgenic approaches adopted to modulate As levels in plants and proposes future directions to achieve desirable results.
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Affiliation(s)
- Pragati Kumari
- Department of Life Science, Singhania University, Jhunjhunu, Rajasthan 333515, India.
| | - Anshu Rastogi
- Department of Meteorology, Poznan University of Life Sciences, Poznan, Poland.
| | - Anurakti Shukla
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005 Uttar Pradesh, India.
| | - Sudhakar Srivastava
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, 221005 Uttar Pradesh, India.
| | - Saurabh Yadav
- Department of Biotechnology, Hemvati Nandan Bahuguna Garhwal (Central) University, Srinagar Garhwal, Uttarakhand 246174, India.
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29
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Das N, Bhattacharya S, Bhattacharyya S, Maiti MK. Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice. PLANT MOLECULAR BIOLOGY 2018; 98:101-120. [PMID: 30121733 DOI: 10.1007/s11103-018-0766-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Accepted: 08/14/2018] [Indexed: 06/08/2023]
Abstract
KEY MESSAGE The OsMATE2 upon constitutive expression in tobacco decreases root-to-shoot As transfer coefficient and its endosperm-specific silencing in rice reduces grain As content, broadening the role of MATE proteins in planta. Rice (Oryza sativa) is capable of accumulating significant amount of arsenic (As) in grains, causing serious health hazard for rice consuming population. The multidrug and toxic compound extrusion (MATE) protein family comprises a large group of secondary transporters present universally in living organisms, and transports metabolites and/or xenobiotic compounds. OsMATE2, one of the MATE family members of rice was found to be transcriptionally up-regulated (sixfolds) in the developing seeds during As stress, and showed positive correlation with the As content in mature grains. Therefore, to understand the role of OsMATE2 in As accumulation, constitutive expression in tobacco was carried out. Transgenic tobacco plants exhibited decreased root-to-shoot As transfer coefficient (33.3-39.6%) along with augmented As sensitivity by increasing oxidative stress compared to untransformed control plants, indicating the involvement of OsMATE2 in As accumulation. Consequently, RNAi strategy was utilized for endosperm-specific silencing of endogenous OsMATE2 to mitigate As accumulation in rice grains. Transgenic rice lines demonstrated significant reduction of both OsMATE2 transcript (~ 38-87%) and grain As content (36.9-47.8%) compared to the control plants without undesirable effects on agronomical traits. Together, the present findings indicate the connection of OsMATE2 in As accumulation, and could expand the functional role of MATE proteins in planta.
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Affiliation(s)
- Natasha Das
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Surajit Bhattacharya
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
- Amity Institute of Biotechnology, Amity University, Rajarhat, Newtown, Kolkata, 700135, India
| | - Somnath Bhattacharyya
- Department of Genetics, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, 741252, India
| | - Mrinal K Maiti
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
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30
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Shukla T, Khare R, Kumar S, Lakhwani D, Sharma D, Asif MH, Trivedi PK. Differential transcriptome modulation leads to variation in arsenic stress response in Arabidopsis thaliana accessions. JOURNAL OF HAZARDOUS MATERIALS 2018; 351:1-10. [PMID: 29506000 DOI: 10.1016/j.jhazmat.2018.02.031] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2017] [Revised: 02/14/2018] [Accepted: 02/15/2018] [Indexed: 05/24/2023]
Abstract
Arsenic (As) is a ubiquitous metalloid and a health hazard to millions of people worldwide. The presence of As in groundwater poses a threat as it not only affects crop productivity but also contaminates food chain. Therefore, it is essential to understand molecular mechanisms underlying uptake, transport and accumulation of As in plants. In recent past, natural variation in Arabidopsis thaliana has been utilized to understand molecular and genetic adaptation under different stresses. In this study, responses of Arabidopsis accessions were analyzed at biochemical and molecular levels towards arsenate [As(V)] stress. On the basis of reduction in root length, accessions were categorized into tolerant and sensitive ones towards As(V). Root length analysis led to the identification of Col-0 (<10% reduction) and Slavi-1 (>60% reduction) as the most tolerant and sensitive accessions, respectively. Comparative genome-wide expression analysis revealed differential expression of 168 and 548 genes in Col-0 and Slavi-1, respectively, with 120 common differentially expressed genes. A number of genes associated with defense and stress-response, transport system, regulatory mechanisms and biochemical processes showed differential expression in contrasting accessions. The study provides an insight into the molecular mechanisms associated with stress response and processes involved in adaptation strategies towards As stress.
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Affiliation(s)
- Tapsi Shukla
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Ria Khare
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Smita Kumar
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India.
| | - Deepika Lakhwani
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Deepika Sharma
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Mehar Hasan Asif
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Prabodh Kumar Trivedi
- CSIR-National Botanical Research Institute (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India.
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31
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Punshon T, Carey AM, Ricachenevsky FK, Meharg AA. Elemental distribution in developing rice grains and the effect of flag-leaf arsenate exposure. ENVIRONMENTAL AND EXPERIMENTAL BOTANY 2018; 149:51-58. [PMID: 30100643 PMCID: PMC6085101 DOI: 10.1016/j.envexpbot.2018.02.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
We measured the bulk grain concentrations of arsenic (As), along with rubidium (Rb) and strontium (Sr) as indicators of phloem and xylem transport respectively, in rice (Oryza sativa cv. Italica Carolina) pulsed with arsenate at two exposure levels for 5 day periods at progressively later stages of grain fill, between anthesis and maturity, through the cut flag leaf. We compared these to unexposed (negative) controls and positive controls; pulsed with dimethylarsinic acid (DMA). We collected elemental maps of As and micronutrient elements (Fe, Zn, Mn, Cu and Ni) from developing grains of rice. Exposures were either 25 or 100 μg/ml arsenate (As(V)) at various stages of grain development, compared to 25 μg/ml dimethylarsinic acid (DMA); the most efficiently transported As species identified in rice. We used the spatial distribution of arsenic in the grain to infer the presence of As transporters. By exposing grains through the flag leaf rather than via the roots, we were able to measure arsenic transport into the grain during filling under controlled conditions. Exposure to 100 μg/ml As(V) resulted in widespread As localization in both embryo and endosperm, especially in grains exposed to As at later stages of panicle development. This suggests loss of selective transport, likely to be the result of As toxicity. At 25 μg/ml As(V), As colocalized with Mn in the ovular vascular trace (OVT). Exposure to either As(V) or DMA reduced grain Fe, an effect more pronounced when exposure occurred earlier in grain development. The abundance of Cu and Zn were also reduced by As. Arsenic exposure later in grain development caused higher grain As concentrations, indicating the existence of As transporters whose efficiency increases during grain fill. We conclude that localization of As in the grain is a product of both As species and exposure concentration, and that high As(V) translocation from the flag leaf can result in high As concentrations in the endosperm.
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Affiliation(s)
- Tracy Punshon
- Dartmouth College, Department of Biological Sciences, Life Sciences Center, 78 College Street, Hanover, NH 03755, USA
- Correspondence: ; Tel.: +1-603-646-1037; Fax: +1-603-646-1347
| | - Anne-Marie Carey
- Center for Innovation in Medicine, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA
| | - Felipe Klein Ricachenevsky
- Programa de Pós-Graduação em Agrobiologia, Departamento de Biologia, Universidade Federal de Santa Maria, Av. Roraima 1000, 97105-900, Santa Maria, RS, Brazil
- Programa de Pós-Graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Av. Bento Gonçalves, 9500, Centro de Biotecnologia, Porto Alegre, RS, Brazil
| | - Andrew A. Meharg
- Institute for Global Food Security, Queen’s University Belfast, David Keir Building, Strandmillis Road, Belfast BT9 5BN, UK
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Verma S, Verma PK, Meher AK, Bansiwal AK, Tripathi RD, Chakrabarty D. A novel fungal arsenic methyltransferase, WaarsM reduces grain arsenic accumulation in transgenic rice (Oryza sativa L.). JOURNAL OF HAZARDOUS MATERIALS 2018; 344:626-634. [PMID: 29112921 DOI: 10.1016/j.jhazmat.2017.10.037] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Revised: 10/16/2017] [Accepted: 10/18/2017] [Indexed: 05/08/2023]
Abstract
Rice (Oryza sativa L.) grown on arsenic-containing soil and water become a primary dietary source of arsenic and pose a significant health risk. Gene modification is an important and practical approach to reduce arsenic accumulation in rice grains. Here, we reported a WaarsM gene of soil fungus Westerdykella aurantiaca, expressed in rice able to convert toxic inorganic arsenicals to methylated arsenic species, therefore, reduce arsenic accumulation in rice grains. In response to arsenic treatment in hydroponics, WaarsM expressing transgenic lines showed a marked increase in arsenic resistance and reduces its accumulation compared to NT. Also, WaarsM expressing transgenic Line 1 evolved ca. 157ng and ca. 43ng volatile arsenicals (mg-1 fresh weight) after 72h of exposure to 25μM AsIII and 250μM AsV, respectively. Transgenic Line 1, grown in soil irrigated with arsenic-containing water accumulates about 50% and 52% lower arsenic than NT in shoot and root, respectively; while arsenic concentration in polished seeds and husk of the transgenic line was reduced by 52% compared to NT. Thus, the present study demonstrates that the expression of WaarsM in rice induces arsenic methylation and volatilization, provides a potential strategy to reduce arsenic accumulation in rice grain.
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Affiliation(s)
- Shikha Verma
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India
| | - Pankaj Kumar Verma
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India
| | - Alok Kumar Meher
- Environmental Material Division, CSIR-National Environmental Engineering Research Institute, India
| | - Amit Kumar Bansiwal
- Environmental Material Division, CSIR-National Environmental Engineering Research Institute, India
| | - Rudra Deo Tripathi
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, India
| | - Debasis Chakrabarty
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India.
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Brinke A, Reifferscheid G, Klein R, Feiler U, Buchinger S. Transcriptional changes measured in rice roots after exposure to arsenite-contaminated sediments. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:2707-2717. [PMID: 29134529 PMCID: PMC5773613 DOI: 10.1007/s11356-017-0515-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Accepted: 10/18/2017] [Indexed: 06/07/2023]
Abstract
Transcriptional analyses are discussed to provide a deeper understanding of the molecular mechanisms underlying toxic effects. Thus, they can complement classic ecotoxicological test methods and potentially allow the identification of biomarkers associated to the exposure of chemical stressors and or adverse biological effects. This feasibility study intended to identify a set of potential gene expression biomarkers for arsenite-exposure in rice roots that could complement the informative value of an existing sediment-contact test with rice. A sediment-contact test with Oryza sativa with the parameters inhibition of root and shoot elongation as phenotypic endpoints was used as basis. Rice plants were exposed to arsenite-spiked sediments. Transcriptomic changes in response to arsenite were observed by means of cDNA-microarray analysis regarding the whole-transcriptome at two sublethal arsenite concentrations. In order to identify candidate biomarker genes, differentially expressed genes were identified. Arsenite-induced differentially expressed genes were significantly associated with gene ontology (GO)-terms that indicated a general stress response. Of the differentially expressed genes, five genes were selected and their expression was measured at seven arsenite concentrations by means of qPCR in order to obtain their expression profiles. Three candidate biomarker genes showed a dose-dependent upregulation, while two showed no clear dose-dependent expression. The expression of all candidate biomarkers was also assessed in rice plants grown on two arsenic-contaminated natural sediments, but only one biomarker gene showed the expected upregulation.
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Affiliation(s)
- Alexandra Brinke
- German Federal Institute of Hydrology, Am Mainzer Tor 1, 56068, Koblenz, Germany.
| | - Georg Reifferscheid
- German Federal Institute of Hydrology, Am Mainzer Tor 1, 56068, Koblenz, Germany
| | - Roland Klein
- Department VI, Trier University, Biogeography, 54286, Trier, Germany
| | - Ute Feiler
- German Federal Institute of Hydrology, Am Mainzer Tor 1, 56068, Koblenz, Germany
| | - Sebastian Buchinger
- German Federal Institute of Hydrology, Am Mainzer Tor 1, 56068, Koblenz, Germany
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Transcriptome analysis in leaves of rice (Oryza sativa) under high manganese stress. Biologia (Bratisl) 2017. [DOI: 10.1515/biolog-2017-0048] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Hwang SG, Chapagain S, Lee JW, Han AR, Jang CS. Genome-wide transcriptome profiling of genes associated with arsenate toxicity in an arsenic-tolerant rice mutant. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 120:40-51. [PMID: 28987861 DOI: 10.1016/j.plaphy.2017.09.019] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2017] [Revised: 09/25/2017] [Accepted: 09/25/2017] [Indexed: 05/07/2023]
Abstract
The presence of arsenic (As) in polluted environments, such as ground water, affects the accumulation of As in rice grains and causes a serious threat to human health. However, the precise molecular regulations related to As toxicity and tolerance in rice remain largely unknown. In the present study, we developed an arsenic-tolerant type 1 (ATT1) rice mutant by γ-irradiation mutagenesis and performed genome-wide transcriptome analysis for the characterization of As-responsive genes. Toxicity inhibited transcriptional regulation of putative genes involved in photosynthesis, mitochondrial electron transport, and lipid biosynthesis metabolism in wild-type (WT) and ATT1 rice mutant. However, many cysteine biosynthesis-related genes were significantly upregulated in both plants. We also attempted to elucidate the putative genes associated with As tolerance by comparing transcriptomes and identified ATT1-specific transcriptional regulation of genes involved in stress and RNA-protein synthesis. This analysis identified 50 genes that had DNA polymorphisms in upstream regions that differed from those in the exon regions, which suggested that genetic variations in the upstream regions might enhance As tolerance in the mutants. Therefore, the expression profiles of the genes evaluated in this study may improve understanding of the functional roles of As-related genes in response to As tolerance mechanisms and could potentially be used in molecular breeding to limit As accumulation in rice grains.
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Affiliation(s)
- Sun-Goo Hwang
- Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea
| | - Sandeep Chapagain
- Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea
| | - Jae Woo Lee
- Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea
| | - A-Reum Han
- Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea
| | - Cheol Seong Jang
- Plant Genomics Laboratory, Department of Applied Plant Sciences, Kangwon National University, Chuncheon 200-713, South Korea.
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Khare R, Kumar S, Shukla T, Ranjan A, Trivedi PK. Differential sulphur assimilation mechanism regulates response of Arabidopsis thaliana natural variation towards arsenic stress under limiting sulphur condition. JOURNAL OF HAZARDOUS MATERIALS 2017; 337:198-207. [PMID: 28525880 DOI: 10.1016/j.jhazmat.2017.05.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Revised: 05/04/2017] [Accepted: 05/05/2017] [Indexed: 06/07/2023]
Abstract
Arsenic (As) is a ubiquitous element, which imposes threat to crops productivity and human health through contaminated food chain. As a part of detoxification mechanism, As is chelated and sequestered into the vacuoles via sulphur containing compounds glutathione (GSH) and phytochelatins (PCs). Under limiting sulphur (LS) conditions, exposure of As leads to enhanced toxic effects in plants. Therefore, it is a prerequisite to understand molecular mechanisms involved in As stress response under sulphur deficiency conditions in plants. In recent years, natural variation has been utilized to explore the genetic determinants linked to plant development and stress response. In this study, natural variation in Arabidopsis has been utilized to understand the molecular mechanisms underlying LS and As(III) stress response. Analysis of different accession of Arabidopsis led to the identification of Koz2-2 and Ri-0 as the most tolerant and sensitive accessions, respectively, towards As(III) and LS+As(III) stress. Biochemical analysis and expression profiling of the genes responsible for sulphur transport and assimilation as well as metal detoxification and accumulation revealed significantly enhanced sulphur assimilation mechanism in Koz2-2 as compared to Ri-0. Analyses suggest that genetic variation regulates differential response of accessions towards As(III) under LS condition.
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Affiliation(s)
- Ria Khare
- CSIR-National Botanical Research Institute, Council of Scientific and Industrial Research (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Smita Kumar
- Centre of Bio-Medical Research (CBMR), Sanjay Gandhi Post-Graduate Institute of Medical Sciences Campus, Raibareli Road, Lucknow, 226014, India.
| | - Tapsi Shukla
- CSIR-National Botanical Research Institute, Council of Scientific and Industrial Research (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India
| | - Avriti Ranjan
- CSIR-National Botanical Research Institute, Council of Scientific and Industrial Research (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226 001, India
| | - Prabodh Kumar Trivedi
- CSIR-National Botanical Research Institute, Council of Scientific and Industrial Research (CSIR-NBRI), Rana Pratap Marg, Lucknow, 226 001, India; Academy of Scientific and Innovative Research (AcSIR), Anusandhan Bhawan, 2 Rafi Marg, New Delhi, 110 001, India.
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Relevance of Reactive Fe:S Ratios for Sulfur Impacts on Arsenic Uptake by Rice. SOILS 2017. [DOI: 10.3390/soils1010001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Souri Z, Karimi N, Sandalio LM. Arsenic Hyperaccumulation Strategies: An Overview. Front Cell Dev Biol 2017; 5:67. [PMID: 28770198 PMCID: PMC5513893 DOI: 10.3389/fcell.2017.00067] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 06/30/2017] [Indexed: 01/01/2023] Open
Abstract
Arsenic (As) pollution, which is on the increase around the world, poses a growing threat to the environment. Phytoremediation, an important green technology, uses different strategies, including As uptake, transport, translocation, and detoxification, to remediate this metalloid. Arsenic hyperaccumulator plants have developed various strategies to accumulate and tolerate high concentrations of As. In these plants, the formation of AsIII complexes with GSH and phytochelatins and their transport into root and shoot vacuoles constitute important mechanisms for coping with As stress. The oxidative stress induced by reactive oxygen species (ROS) production is one of the principal toxic effects of As; moreover, the strong antioxidative defenses in hyperaccumulator plants could constitute an important As detoxification strategy. On the other hand, nitric oxide activates antioxidant enzyme and phytochelatins biosynthesis which enhances As stress tolerance in plants. Although several studies have focused on transcription, metabolomics, and proteomic changes in plants induced by As, the mechanisms involved in As transport, translocation, and detoxification in hyperaccumulator plants need to be studied in greater depth. This review updates recent progress made in the study of As uptake, translocation, chelation, and detoxification in As hyperaccumulator plants.
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Affiliation(s)
- Zahra Souri
- Laboratory of Plant Physiology, Department of Biology, Faculty of Science, Razi UniversityKermanshah, Iran
| | - Naser Karimi
- Laboratory of Plant Physiology, Department of Biology, Faculty of Science, Razi UniversityKermanshah, Iran
| | - Luisa M. Sandalio
- Laboratory of Oxygen and Nitrogen Species Signalling Under Plant Stress Conditions, Department of Biochemistry and Molecular and Cellular Biology of Plants, Estación Experimental del Zaidín, Consejo Superior de Investigaciones CientíficasGranada, Spain
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Yanitch A, Brereton NJB, Gonzalez E, Labrecque M, Joly S, Pitre FE. Transcriptomic Response of Purple Willow ( Salix purpurea) to Arsenic Stress. FRONTIERS IN PLANT SCIENCE 2017; 8:1115. [PMID: 28702037 PMCID: PMC5487440 DOI: 10.3389/fpls.2017.01115] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2017] [Accepted: 06/09/2017] [Indexed: 05/25/2023]
Abstract
Arsenic (As) is a toxic element for plants and one of the most common anthropogenic pollutants found at contaminated sites. Despite its severe effects on plant metabolism, several species can accumulate substantial amounts of arsenic and endure the associated stress. However, the genetic mechanisms involved in arsenic tolerance remains obscure in many model plant species used for land decontamination (phytoremediation), including willows. The present study assesses the potential of Salix purpurea cv. 'Fish Creek' for arsenic phytoextraction and reveals the genetic responses behind arsenic tolerance, phytoextraction and metabolism. Four weeks of hydroponic exposure to 0, 5, 30 and 100 mg/L revealed that plants were able to tolerate up to 5 mg/L arsenic. Concentrations of 0 and 5 mg/L of arsenic treatment were then used to compare alterations in gene expression of roots, stems and leaves using RNA sequencing. Differential gene expression revealed transcripts encoding proteins putatively involved in entry of arsenic into the roots, storage in vacuoles and potential transport through the plant as well as primary and secondary (indirect) toxicity tolerance mechanisms. A major role for tannin as a compound used to relieve cellular toxicity is implicated as well as unexpected expression of the cadmium transporter CAX2, providing a potential means for internal arsenic mobility. These insights into the underpinning genetics of a successful phytoremediating species present novel opportunities for selection of dedicated arsenic tolerant crops as well as the potential to integrate such tolerances into a wider Salix ideotype alongside traits including biomass yield, biomass quality, low agricultural inputs and phytochemical production.
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Affiliation(s)
- Aymeric Yanitch
- Institut de Recherche en Biologie Végétale, University of MontrealMontréal, QC, Canada
| | | | - Emmanuel Gonzalez
- Canadian Centre for Computational Genomics, C3G Montreal Node, McGill University and Genome Quebec Innovation CentreMontréal, QC, Canada
| | - Michel Labrecque
- Institut de Recherche en Biologie Végétale, University of MontrealMontréal, QC, Canada
- Montreal Botanical GardenMontréal, QC, Canada
| | - Simon Joly
- Institut de Recherche en Biologie Végétale, University of MontrealMontréal, QC, Canada
- Montreal Botanical GardenMontréal, QC, Canada
| | - Frederic E. Pitre
- Institut de Recherche en Biologie Végétale, University of MontrealMontréal, QC, Canada
- Montreal Botanical GardenMontréal, QC, Canada
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Sharma S, Anand G, Singh N, Kapoor R. Arbuscular Mycorrhiza Augments Arsenic Tolerance in Wheat ( Triticum aestivum L.) by Strengthening Antioxidant Defense System and Thiol Metabolism. FRONTIERS IN PLANT SCIENCE 2017; 8:906. [PMID: 28642762 PMCID: PMC5462957 DOI: 10.3389/fpls.2017.00906] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2017] [Accepted: 05/15/2017] [Indexed: 05/20/2023]
Abstract
Arbuscular mycorrhiza (AM) can help plants to tolerate arsenic (As) toxicity. However, plant responses are found to vary with the host plant and the AM fungal species. The present study compares the efficacy of two AM fungi Rhizoglomus intraradices (M1) and Glomus etunicatum (M2) in amelioration of As stress in wheat (Triticum aestivum L. var. HD-2967). Mycorrhizal (M) and non-mycorrhizal (NM) wheat plants were subjected to four levels of As (0, 25, 50, and 100 mg As kg-1 soil). Although As additions had variable effects on the percentage of root colonized by the two fungal inoculants, each mycobiont conferred benefits to the host plant. Mycorrhizal plants continued to display better growth than NM plants. Formation of AM helped the host plant to overcome As-induced P deficiency and maintained favorable P:As ratio. Inoculation of AMF had variable effects on the distribution of As in plant tissues. While As translocation factor decreased in low As (25 mg kg-1 soil), it increased under high As (50 and 100 mg As kg-1 soil). Further As translocation to grain was reduced (As grain:shoot ratio) in M plants compared with NM plants. Arsenic-induced oxidative stress (generation of H2O2 and lipid peroxidation) in plants reduced significantly by AMF inoculation. The alleviation potential of AM was more evident with increase in severity of As stress. Colonization of AMF resulted in higher activities of the antioxidant enzymes (superoxide dismutase, catalase, and guaiacol peroxidase). It increased the concentrations of the antioxidant molecules (carotenoids, proline, and α-tocopherol) than their NM counterparts at high As addition level. Comparatively higher activities of enzymes of glutathione-ascorbate cycle in M plants led to higher ascorbate:dehydroascorbate (AsA:DHA) and glutathione:glutathione disulphide (GSH:GSSG) ratios. Inoculation by AMF also augmented the glyoxalase system by increasing the activities of both glyoxalase I and glyoxalase II enzymes. Mycorrhizal colonization increased concentrations of cysteine, glutathione, non-protein thiols, and activity of glutathione-S-transferase that facilitated sequestration of As into non-toxic complexes. The study reveals multifarious role of AMF in alleviation of As toxicity.
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Affiliation(s)
- Surbhi Sharma
- Department of Botany, University of DelhiNew Delhi, India
| | - Garima Anand
- Department of Botany, University of DelhiNew Delhi, India
| | - Neeraja Singh
- Department of Botany, University of DelhiNew Delhi, India
| | - Rupam Kapoor
- Department of Botany, University of DelhiNew Delhi, India
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Bakhat HF, Zia Z, Fahad S, Abbas S, Hammad HM, Shahzad AN, Abbas F, Alharby H, Shahid M. Arsenic uptake, accumulation and toxicity in rice plants: Possible remedies for its detoxification: A review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:9142-9158. [PMID: 28160172 DOI: 10.1007/s11356-017-8462-2] [Citation(s) in RCA: 83] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 01/16/2017] [Indexed: 05/13/2023]
Abstract
Arsenic (As) is a toxic metalloid. Serious concerns have been raised in literature owing to its potential toxicity towards living beings. The metalloid causes various water- and food-borne diseases. Among food crops, rice contains the highest concentrations of As. Consuming As-contaminated rice results in serious health issues. Arsenic concentration in rice is governed by various factors in the rhizosphere such as availability and concentration of various mineral nutrients (iron, phosphate, sulfur and silicon) in soil solution, soil oxidation/reduction status, inter-conversion between organic and inorganic As compounds. Agronomic and civil engineering methods can be adopted to decrease As accumulation in rice. Agronomic methods such as improving soil porosity/aeration by irrigation management or creating the conditions favorable for As-precipitate formation, and decreasing As uptake and translocation by adding a inorganic nutrients that compete with As are easy and cost effective techniques at field scale. This review focuses on the factors regulating and competing As in soil-plant system and As accumulation in rice grains. Therefore, it is suggested that judicious use of water, management of soil, antagonistic effects of various inorganic plant-nutrients to As should be considered in rice cultivated areas to mitigate the building up of As in human food chain and with minimum negative impact to the environment.
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Affiliation(s)
- Hafiz Faiq Bakhat
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan.
| | - Zahida Zia
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan
| | - Shah Fahad
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
| | - Sunaina Abbas
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan
| | - Hafiz Mohkum Hammad
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan
| | | | - Farhat Abbas
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan
| | - Hesham Alharby
- Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, 21589, Saudi Arabia
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS Institute of Information Technology, Vehari, 61100, Pakistan
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Chen Y, Han YH, Cao Y, Zhu YG, Rathinasabapathi B, Ma LQ. Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice. FRONTIERS IN PLANT SCIENCE 2017; 8:268. [PMID: 28298917 PMCID: PMC5331031 DOI: 10.3389/fpls.2017.00268] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Accepted: 02/14/2017] [Indexed: 05/02/2023]
Abstract
Rice (Oryza sativa L.) feeds ∼3 billion people. Due to the wide occurrence of arsenic (As) pollution in paddy soils and its efficient plant uptake, As in rice grains presents health risks. Genetic manipulation may offer an effective approach to reduce As accumulation in rice grains. The genetics of As uptake and metabolism have been elucidated and target genes have been identified for genetic engineering to reduce As accumulation in grains. Key processes controlling As in grains include As uptake, arsenite (AsIII) efflux, arsenate (AsV) reduction and AsIII sequestration, and As methylation and volatilization. Recent advances, including characterization of AsV uptake transporter OsPT8, AsV reductase OsHAC1;1 and OsHAC1;2, rice glutaredoxins, and rice ABC transporter OsABCC1, make many possibilities to develop low-arsenic rice.
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Affiliation(s)
- Yanshan Chen
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing UniversityNanjing, China
| | - Yong-He Han
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing UniversityNanjing, China
| | - Yue Cao
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing UniversityNanjing, China
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of SciencesXiamen, China
| | - Bala Rathinasabapathi
- Horticultural Sciences Department, University of Florida, GainesvilleFL, USA
- *Correspondence: Lena Q. Ma, Bala Rathinasabapathi,
| | - Lena Q. Ma
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing UniversityNanjing, China
- Soil and Water Science Department, University of Florida, GainesvilleFL, USA
- *Correspondence: Lena Q. Ma, Bala Rathinasabapathi,
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Ghosh S, Biswas AK. Selenium Modulates Growth and Thiol Metabolism in Wheat (<i>Triticum aestivum</i> L.) during Arsenic Stress. ACTA ACUST UNITED AC 2017. [DOI: 10.4236/ajps.2017.83026] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Liu Y, Mi Y, Zhang J, Li Q, Chen L. Illumina-based transcriptomic profiling of Panax notoginseng in response to arsenic stress. BOTANICAL STUDIES 2016; 57:13. [PMID: 28597423 PMCID: PMC5432919 DOI: 10.1186/s40529-016-0128-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2015] [Accepted: 05/05/2016] [Indexed: 05/24/2023]
Abstract
BACKGROUND Panax notoginseng, a famous herbal medicine, has recently attracted great attention on its safety and quality since P. notoginseng can accumulate and tolerate As from growing environment. For the purpose of understanding As damage to the quality of P. notoginseng as well as corresponding tolerance mechanisms, genes involved in As stress response were identified using Illumina sequencing. RESULTS Totally 91,979,946 clean reads were generated and were de novo assembled into 172,355 unigenes. A total of 81,575 unigenes were annotated in at least one database for their functions, accounting for 47.34 %. By comparative analysis, 1725 differentially expressed genes (DEGs, 763 up-regulated/962 down-regulated) were identified between As stressed plant (HAs) and control plant (CK), among which 20 DEGs were further validated by real-time quantitative PCR (qRT-PCR). In the upstream and downstream steps of biosynthesis pathways of ginsenosides and flavonoids, 7 genes encoding key enzymes were down-regulated in HAs. Such down-regulations were also revealed in pathway enrichment analysis. Genes encoding transporters (transporters of ABC, MATE, sugar, oligopeptide, nitrate), genes related to hormone metabolism (ethylene, ABA, cytokinin) and genes related to arsenic accumulation (HXT, NRAMP, MT and GRX) were differentially expressed. The up-regulated genes included those of oxidative stress-related protein (GSTs, thioredoxin), transcription factors (HSFs, MYBs) and molecular chaperones (HSP). CONCLUSIONS The down-regulation of biosynthesis of ginsenoside and flavonoid indicated that As accumulation in P. notoginseng can cause not only safety hazard, but also qualitative losses. Aside from the results of arsenic content of seedling roots, the ability of P. notoginseng to over-accumulate arsenic can also be explained by the differential expression of genes of HXT, NRAMP, MT and GRX. To illustrate the detoxification mechanism of P. notoginseng, differential expression of genes encoding oxidative-related proteins, transcription factors, molecular chaperones, transporters and hormone were revealed in our study, which agreed with those reported in Arabidopsis to a certain extent, indicating P. notoginseng and Arabidopsis shared some common detoxification mechanisms in response to As stress. The longer As treatment in our study may account for the smaller quantity of related DEGs and smaller degree of expression differences of certain DEGs compared with those of Arabidopsis.
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Affiliation(s)
- Yanfang Liu
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, No. 2238, Beijing Road, Kunming, 650205 People’s Republic of China
| | - Yanhua Mi
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, No. 2238, Beijing Road, Kunming, 650205 People’s Republic of China
| | - Jianhua Zhang
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, No. 2238, Beijing Road, Kunming, 650205 People’s Republic of China
| | - Qiwan Li
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, No. 2238, Beijing Road, Kunming, 650205 People’s Republic of China
| | - Lu Chen
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, No. 2238, Beijing Road, Kunming, 650205 People’s Republic of China
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Verma PK, Verma S, Meher AK, Pande V, Mallick S, Bansiwal AK, Tripathi RD, Dhankher OP, Chakrabarty D. Overexpression of rice glutaredoxins (OsGrxs) significantly reduces arsenite accumulation by maintaining glutathione pool and modulating aquaporins in yeast. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 106:208-17. [PMID: 27174139 DOI: 10.1016/j.plaphy.2016.04.052] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Revised: 04/29/2016] [Accepted: 04/29/2016] [Indexed: 05/05/2023]
Abstract
Arsenic (As) is an acute poison and class I carcinogen, can cause a serious health risk. Staple crops like rice are the primary source of As contamination in human food. Rice grown on As contaminated areas accumulates higher As in their edible parts. Based on our previous transcriptome data, two rice glutaredoxins (OsGrx_C7 and OsGrx_C2.1) were identified that showed up-regulated expression during As stress. Here, we report OsGrx_C7 and OsGrx_C2.1 from rice involved in the regulation of intracellular arsenite (AsIII). To elucidate the mechanism of OsGrx mediated As tolerance, both OsGrxs were cloned and expressed in Escherichia coli (Δars) and Saccharomyces cerevisiae mutant strains (Δycf1, Δacr3). The expression of OsGrxs increased As tolerance in E. coli (Δars) mutant strain (up to 4 mM AsV and up to 0.6 mM AsIII). During AsIII exposure, S. cerevisiae (Δacr3) harboring OsGrx_C7 and OsGrx_C2.1 have lower intracellular AsIII accumulation (up to 30.43% and 24.90%, respectively), compared to vector control. Arsenic accumulation in As-sensitive S. cerevisiae mutant (Δycf1) also reduced significantly on exposure to inorganic As. The expression of OsGrxs in yeast maintained intracellular GSH pool and increased extracellular GSH concentration. Purified OsGrxs displays in vitro GSH-disulfide oxidoreductase, glutathione reductase and arsenate reductase activities. Also, both OsGrxs are involved in AsIII extrusion by altering the Fps1 transcripts in yeast and protect the cell by maintaining cellular GSH pool. Thus, our results strongly suggest that OsGrxs play a crucial role in the maintenance of the intracellular GSH pool and redox status of the cell during both AsV and AsIII stress and might be involved in regulating intracellular AsIII levels by modulation of aquaporin expression and functions.
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Affiliation(s)
- Pankaj Kumar Verma
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India; Department of Biotechnology, Kumaun University, India
| | - Shikha Verma
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India; Department of Biotechnology, Kumaun University, India
| | - Alok Kumar Meher
- Environmental Material Division, CSIR-National Environmental Engineering Research Institute, India
| | - Veena Pande
- Department of Biotechnology, Kumaun University, India
| | - Shekhar Mallick
- Environmental Biotechnology Division, CSIR-National Botanical Research Institute, India
| | - Amit Kumar Bansiwal
- Environmental Material Division, CSIR-National Environmental Engineering Research Institute, India
| | - Rudra Deo Tripathi
- Environmental Biotechnology Division, CSIR-National Botanical Research Institute, India
| | - Om Parkash Dhankher
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA, USA
| | - Debasis Chakrabarty
- Genetics and Molecular Biology Division, CSIR-National Botanical Research Institute, India.
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Park JH, Han YS, Seong HJ, Ahn JS, Nam IH. Arsenic uptake and speciation in Arabidopsis thaliana under hydroponic conditions. CHEMOSPHERE 2016; 154:283-288. [PMID: 27058920 DOI: 10.1016/j.chemosphere.2016.03.126] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Revised: 03/17/2016] [Accepted: 03/25/2016] [Indexed: 06/05/2023]
Abstract
Arsenic (As) uptake and species in Arabidopsis thaliana were evaluated under hydroponic conditions. Plant nutrient solutions were treated with arsenite [As(III)] or arsenate [As(V)], and aqueous As speciation was conducted using a solid phase extraction (SPE) cartridge. Arabidopsis reduced As(V) to As(III) in the nutrient solution, possibly due to root exudates such as organic acids or the efflux of As(III) from plant roots after in vivo reduction of As(V) to As(III). Arsenic uptake by Arabidopsis was associated with increased levels of Ca and Fe, and decreased levels of K in plant tissues. Arsenic in Arabidopsis mainly occurred as As(III), which was coordinated with oxygen and sulfur based on XANES and EXAFS results. The existence of As(III)O and As(III)S in EXAFS indicates partial biotransformation of As(III)O to a sulfur-coordinated form because of limited amount of glutathione in plants. Further understanding the mechanism of As biotransformation in Arabidopsis may help to develop measures that can mitigate As toxicity via genetic engineering.
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Affiliation(s)
- Jin Hee Park
- Geologic Environment Division, Korea Institute of Geoscience and Mineral Resources, 124 Gwahang-no, Yuseong-gu, Daejeon, 34132, Republic of Korea
| | - Young-Soo Han
- Geologic Environment Division, Korea Institute of Geoscience and Mineral Resources, 124 Gwahang-no, Yuseong-gu, Daejeon, 34132, Republic of Korea
| | - Hye Jin Seong
- Department of Energy & Resources Engineering, Korea Maritime and Ocean University, 727 Taejong-ro, Yeongdo-Gu, Busan, 49112, Republic of Korea
| | - Joo Sung Ahn
- Geologic Environment Division, Korea Institute of Geoscience and Mineral Resources, 124 Gwahang-no, Yuseong-gu, Daejeon, 34132, Republic of Korea
| | - In-Hyun Nam
- Geologic Environment Division, Korea Institute of Geoscience and Mineral Resources, 124 Gwahang-no, Yuseong-gu, Daejeon, 34132, Republic of Korea.
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Liu M, Qiu W, He X, Zheng L, Song X, Han X, Jiang J, Qiao G, Sang J, Liu M, Zhuo R. Functional Characterization of a Gene in Sedum alfredii Hance Resembling Rubber Elongation Factor Endowed with Functions Associated with Cadmium Tolerance. FRONTIERS IN PLANT SCIENCE 2016; 7:965. [PMID: 27446189 PMCID: PMC4925709 DOI: 10.3389/fpls.2016.00965] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Accepted: 06/16/2016] [Indexed: 05/19/2023]
Abstract
Cadmium is a major toxic heavy-metal pollutant considering their bioaccumulation potential and persistence in the environment. The hyperaccumulating ecotype of Sedum alfredii Hance is a Zn/Cd co-hyperaccumulator inhabiting in a region of China with soils rich in Pb/Zn. Investigations into the underlying molecular regulatory mechanisms of Cd tolerance are of substantial interest. Here, library screening for genes related to cadmium tolerance identified a gene resembling the rubber elongation factor gene designated as SaREFl. The heterologous expression of SaREFl rescued the growth of a transformed Cd-sensitive strain (ycf1). Furthermore, SaREFl-expressing Arabidopsis plants were more tolerant to cadmium stress compared with wild type by measuring parameters of root length, fresh weight and physiological indexes. When under four different heavy metal treatments, we found that SaREFl responded most strongly to Cd and the root was the plant organ most sensitive to this heavy metal. Yeast two-hybrid screening of SaREFl as a bait led to the identification of five possible interacting targets in Sedum alfredii Hance. Among them, a gene annotated as prenylated Rab acceptor 1 (PRA1) domain protein was detected with a high frequency. Moreover, subcellular localization of SaREF1-GFP fusion protein revealed some patchy spots in cytosol suggesting potential association with organelles for its cellular functions. Our findings would further enrich the connotation of REF-like genes and provide theoretical assistance for the application in breeding heavy metal-tolerant plants.
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Affiliation(s)
- Mingying Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Wenming Qiu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Xuelian He
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
- Biotechnology Research Center of China Three Gorges University, YichangChina
| | - Liu Zheng
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
- Biotechnology Research Center of China Three Gorges University, YichangChina
| | - Xixi Song
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Xiaojiao Han
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Jing Jiang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Guirong Qiao
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Jian Sang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
| | - Mingqing Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Vocational Secondary Specialized School of Hedong District, LinyiChina
| | - Renying Zhuo
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, BeijingChina
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical Forestry, Chinese Academy of Forestry, HangzhouChina
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Campos NV, Araújo TO, Arcanjo-Silva S, Freitas-Silva L, Azevedo AA, Nunes-Nesi A. Arsenic hyperaccumulation induces metabolic reprogramming in Pityrogramma calomelanos to reduce oxidative stress. PHYSIOLOGIA PLANTARUM 2016; 157:135-46. [PMID: 26853807 DOI: 10.1111/ppl.12426] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2015] [Accepted: 12/22/2015] [Indexed: 05/07/2023]
Abstract
Arsenic (As) pollution is a major environmental concern due to its worldwide distribution and high toxicity to organisms. The fern Pityrogramma calomelanos is one of the few plant species known to be able to hyperaccumulate As, although the mechanisms involved are largely unknown. This study aimed to investigate the metabolic adjustments involved in the As-tolerance of P. calomelanos. For this purpose, ferns with five to seven fronds were exposed to a series of As concentrations. Young fronds were used for biochemical analysis and metabolite profiling using gas chromatography-mass spectrometry. As treatment increased the total concentration of proteins and soluble phenols, enhanced peroxidase activities, and promoted disturbances in nitrogen and carbon metabolism. The reduction of the glucose pool was one of the striking responses to As. Remarkable changes in amino acids levels were observed in As-treated plants, including those related to biosynthesis of glutathione and phenols, osmoregulation and two photorespiratory intermediates. In addition, increases in polyamines levels and antioxidant enzyme activities were observed. In summary, this study indicates that P. calomelanos tolerates high concentration of As due to its capacity to upregulate biosynthesis of amino acids and antioxidants, without greatly disturbing central carbon metabolism. At extremely high As concentrations, however, this protective mechanism fails to block reactive oxygen species production, leading to lipid peroxidation and leaf necrosis.
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Affiliation(s)
- Naiara V Campos
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Talita O Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Samara Arcanjo-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Larisse Freitas-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Aristéa A Azevedo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
- Max-Planck Partner Group, Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, 36570-900, Brazil
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49
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Imadi SR, Kazi AG, Ahanger MA, Gucel S, Ahmad P. Plant transcriptomics and responses to environmental stress: an overview. J Genet 2016; 94:525-37. [PMID: 26440096 DOI: 10.1007/s12041-015-0545-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Different stresses include nutrient deficiency, pathogen attack, exposure to toxic chemicals etc. Transcriptomic studies have been mainly applied to only a few plant species including the model plant, Arabidopsis thaliana. These studies have provided valuable insights into the genetic networks of plant stress responses. Transcriptomics applied to cash crops including barley, rice, sugarcane, wheat and maize have further helped in understanding physiological and molecular responses in terms of genome sequence, gene regulation, gene differentiation, posttranscriptional modifications and gene splicing. On the other hand, comparative transcriptomics has provided more information about plant's response to diverse stresses. Thus, transcriptomics, together with other biotechnological approaches helps in development of stress tolerance in crops against the climate change.
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Affiliation(s)
- Sameen Ruqia Imadi
- Atta-ur-Rehman School of Applied Biosciences, National University of Sciences and Technology, H-12 Campus, Islamabad 25000,
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50
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Upadhyay AK, Singh NK, Singh R, Rai UN. Amelioration of arsenic toxicity in rice: Comparative effect of inoculation of Chlorella vulgaris and Nannochloropsis sp. on growth, biochemical changes and arsenic uptake. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2016; 124:68-73. [PMID: 26473328 DOI: 10.1016/j.ecoenv.2015.10.002] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2015] [Revised: 09/30/2015] [Accepted: 10/04/2015] [Indexed: 05/28/2023]
Abstract
The present study was conducted to assess the responses of rice (Oryza sativa L. var. Triguna) by inoculating alga; Chlorella vulgaris and Nannochlropsis sp. supplemented with As(III) (50µM) under hydroponics condition. Results showed that reduced growth variables and protein content in rice plant caused by As toxicity were restored in the algae inoculated plants after 7d of treatment. The rice plant inoculated with Nannochloropsis sp. exhibited a better response in terms of increased root, shoot length and biomass than C. vulgaris under As(III) treatment. A significant reduction in cellular toxicity (thiobarbituric acid reactive substances) and antioxidant enzyme (SOD, APX and GR) activities were observed in algae inoculated rice plant under As(III) treatment in comparison to uninoculated rice. In addition, rice treated with As(III), accumulated 35.05mgkg(-1)dw arsenic in the root and 29.96mgkg(-1)dw in the shoot. However, lower accumulation was observed in As(III) treated rice inoculated with C. vulgaris (24.09mg kg(-1)dw) and Nannochloropsis sp. (20.66mgkg(-1)dw) in the roots, while in shoot, it was 20.10mgkg(-1)dw and 11.67mgkg(-1)dw, respectively. Results demonstrated that application of these algal inoculum ameliorates toxicity and improved tolerance in rice through reduced As uptake and modulating antioxidant enzymes. Thus, application of algae could provide a low-cost and eco-friendly mitigation approach to reduce accumulation of arsenic in edible part of rice as well as higher yield in the As contaminated agricultural field.
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Affiliation(s)
- A K Upadhyay
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - N K Singh
- Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi 221005, India
| | - R Singh
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - U N Rai
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow 226001, India.
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