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Chibane N, Revilla P, Yannam VRR, Marcet P, Covelo EF, Ordás B. Impact of irrigation, nitrogen fertilization, and plant density on stay-green and its effects on agronomic traits in maize. FRONTIERS IN PLANT SCIENCE 2024; 15:1399072. [PMID: 39309183 PMCID: PMC11414411 DOI: 10.3389/fpls.2024.1399072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 08/05/2024] [Indexed: 09/25/2024]
Abstract
Introduction The stay-green (SG) or delayed leaf senescence enables crop plants to maintain their green leaves and photosynthetic capacity for a longer time after flowering. It is considered an important trait in maize breeding, which has contributed to gain in grain yield of modern varieties. It has been also used to improve the tolerance to drought and deficiencies in nitrogen fertilization (NF). However, the objective of this study is to evaluate the influence of water irrigation (WI), NF, and plant density (PD) on SG and the effect of SG on agronomic traits in maize. Methods Four SG lines and four non-stay-green (NSG) lines were evaluated in four contrasting environments under two WI, three NF, and two PD levels. Results and discussion As expected, the chlorophyll content of leaves at 45 days after flowering (Chlo45) was, on average, higher in the SG group of lines. The difference in Chlo45 between the SG and NSG genotypes was consistent across WI, NF, and PD and the environments. This is indicative that internal or developmental factors were more important than external signals in controlling the senescence. The effect of SG increasing thousand-kernel weight, stover yield at harvest, or moisture was not influenced by WI, NF, or PD but was altered by the background environment. Our results have implications for the application of SG as a secondary trait for enhancing abiotic stress tolerance. Future studies could consider a wider range of environmental conditions to assess the performance of SG traits under different climatic and soil conditions.
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Affiliation(s)
- Nadia Chibane
- Maize Genetics and Breeding Group, Misión Biológica de Galicia [The Spanish National Research Council (CSIC)], Pontevedra, Spain
| | - Pedro Revilla
- Maize Genetics and Breeding Group, Misión Biológica de Galicia [The Spanish National Research Council (CSIC)], Pontevedra, Spain
| | - Venkata Rami Reddy Yannam
- Sustainable Field Crops Program, Institute for Food and Agricultural Research and Technology (IRTA), Lleida, Spain
| | - Purificación Marcet
- Area de Edafología y Química Agricola, Facultad de Ciencias, Universidad de Vigo, Vigo, Spain
| | - Emma Fernández Covelo
- Area de Edafología y Química Agricola, Facultad de Ciencias, Universidad de Vigo, Vigo, Spain
| | - Bernardo Ordás
- Crop Adaptation and Sustainability Group, Misión Biológica de Galicia [The Spanish National Research Council (CSIC)], Pontevedra, Spain
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Bianchetti G, Clouet V, Legeai F, Baron C, Gazengel K, Vu BL, Baud S, To A, Manzanares-Dauleux MJ, Buitink J, Nesi N. Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress. PHYSIOLOGIA PLANTARUM 2024; 176:e14130. [PMID: 38842416 DOI: 10.1111/ppl.14130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/24/2023] [Accepted: 11/29/2023] [Indexed: 06/07/2024]
Abstract
In order to capture the drought impacts on seed quality acquisition in Brassica napus and its potential interaction with early biotic stress, seeds of the 'Express' genotype of oilseed rape were characterized from late embryogenesis to full maturity from plants submitted to reduced watering (WS) with or without pre-occurring inoculation by the telluric pathogen Plasmodiophora brassicae (Pb + WS or Pb, respectively), and compared to control conditions (C). Drought as a single constraint led to significantly lower accumulation of lipids, higher protein content and reduced longevity of the WS-treated seeds. In contrast, when water shortage was preceded by clubroot infection, these phenotypic differences were completely abolished despite the upregulation of the drought sensor RD20. A weighted gene co-expression network of seed development in oilseed rape was generated using 72 transcriptomes from developing seeds from the four treatments and identified 33 modules. Module 29 was highly enriched in heat shock proteins and chaperones that showed a stronger upregulation in Pb + WS compared to the WS condition, pointing to a possible priming effect by the early P. brassicae infection on seed quality acquisition. Module 13 was enriched with genes encoding 12S and 2S seed storage proteins, with the latter being strongly upregulated under WS conditions. Cis-element promotor enrichment identified PEI1/TZF6, FUS3 and bZIP68 as putative regulators significantly upregulated upon WS compared to Pb + WS. Our results provide a temporal co-expression atlas of seed development in oilseed rape and will serve as a resource to characterize the plant response towards combinations of biotic and abiotic stresses.
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Affiliation(s)
- Grégoire Bianchetti
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
| | - Vanessa Clouet
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
| | - Fabrice Legeai
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
| | - Cécile Baron
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
| | - Kévin Gazengel
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
| | - Benoit Ly Vu
- IRHS, INRAE, Institut Agro Rennes-Angers, Université d'Angers, France
| | | | | | | | - Julia Buitink
- IRHS, INRAE, Institut Agro Rennes-Angers, Université d'Angers, France
| | - Nathalie Nesi
- IGEPP, INRAE, Institut Agro Rennes-Angers, Université de Rennes, Le Rheu, France
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Kim SH, Yoon J, Kim H, Lee SJ, Paek NC. Rice Basic Helix-Loop-Helix 079 (OsbHLH079) Delays Leaf Senescence by Attenuating ABA Signaling. RICE (NEW YORK, N.Y.) 2023; 16:60. [PMID: 38093151 PMCID: PMC10719235 DOI: 10.1186/s12284-023-00673-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 11/27/2023] [Indexed: 12/17/2023]
Abstract
Leaf senescence represents the final phase of leaf development and is characterized by a highly organized degenerative process involving the active translocation of nutrients from senescing leaves to growing tissues or storage organs. To date, a large number of senescence-associated transcription factors (sen-TFs) have been identified that regulate the initiation and progression of leaf senescence. Many of these TFs, including NAC (NAM/ATAF1/2/CUC2), WRKY, and MYB TFs, have been implicated in modulating the expression of downstream senescence-associated genes (SAGs) and chlorophyll degradation genes (CDGs) under the control of phytohormones. However, the involvement of basic helix-loop-helix (bHLH) TFs in leaf senescence has been less investigated. Here, we show that OsbHLH079 delays both natural senescence and dark-induced senescence: Overexpression of OsbHLH079 led to a stay-green phenotype, whereas osbhlh079 knockout mutation displayed accelerated leaf senescence. Similar to other sen-TFs, OsbHLH079 showed a gradual escalation in expression as leaves underwent senescence. During this process, the mRNA levels of SAGs and CDGs remained relatively low in OsbHLH079 overexpressors, but increased sharply in osbhlh079 mutants, suggesting that OsbHLH079 negatively regulates the transcription of SAGs and CDGs under senescence conditions. Additionally, we found that OsbHLH079 delays ABA-induced senescence. Subsequent RT-qPCR and dual-luciferase reporter assays revealed that OsbHLH079 downregulates the expression of ABA signaling genes, such as OsABF2, OsABF4, OsABI5, and OsNAP. Taken together, these results demonstrate that OsbHLH079 functions in delaying leaf yellowing by attenuating the ABA responses.
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Affiliation(s)
- Suk-Hwan Kim
- Department of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Jungwon Yoon
- Department of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Hanna Kim
- Department of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Sang-Ji Lee
- Department of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Nam-Chon Paek
- Department of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.
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4
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Xie Z, Zhang Q, Xia C, Dong C, Li D, Liu X, Kong X, Zhang L. Identification of the early leaf senescence gene ELS3 in bread wheat (Triticum aestivum L.). PLANTA 2023; 259:5. [PMID: 37994951 DOI: 10.1007/s00425-023-04278-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Accepted: 10/31/2023] [Indexed: 11/24/2023]
Abstract
MAIN CONCLUSION Characterization of the early leaf senescence mutant els3 and identification of its causal gene ELS3, which encodes an LRR-RLK protein in wheat. Leaf senescence is an important agronomic trait that affects both crop yield and quality. However, few senescence-related genes in wheat have been cloned and functionally analyzed. Here, we report the characterization of the early leaf senescence mutant els3 and fine mapping of its causal gene ELS3 in wheat. Compared with wild-type Yanzhan4110 (YZ4110), the els3 mutant had a decreased chlorophyll content and a degraded chloroplast structure after the flowering stage. Further biochemical assays in flag leaves showed that the superoxide anion and hydrogen peroxide contents increased, while the activities of antioxidant enzymes, including catalase, superoxide dismutase and glutathione reductase, decreased gradually after the flowering stage in the els3 mutant. To clone the causal gene underlying the phenotype of leaf senescence, a genetic map was constructed using 10,133 individuals of F2:3 populations, and ELS3 was located in a 2.52 Mb region on chromosome 2DL containing 16 putative genes. Subsequent sequence analysis and gene annotation identified only one SNP (C to T) in the first exon of TraesCS2D02G332700, resulting in an amino acid substitution (Pro329Ser), and TraesCS2D02G332700 was preliminarily considered as the candidate gene of ELS3. ELS3 encodes a leucine-rich repeat receptor-like kinase (LRR-RLK) protein that is localized on the cell membrane. We also found that the transient expression of mutant TraesCS2D02G332700 can induce leaf senescence in N. benthamiana. Taken together, TraesCS2D02G332700 is likely to be the candidate gene of ELS3 and may have a function in regulating leaf senescence.
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Affiliation(s)
- Zhencheng Xie
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Qiang Zhang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, 310006, Zhejiang, China
| | - Chuan Xia
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Chunhao Dong
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Danping Li
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xu Liu
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Xiuying Kong
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
| | - Lichao Zhang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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Zhang W, Ni K, Long L, Ruan J. Nitrogen transport and assimilation in tea plant ( Camellia sinensis): a review. FRONTIERS IN PLANT SCIENCE 2023; 14:1249202. [PMID: 37810380 PMCID: PMC10556680 DOI: 10.3389/fpls.2023.1249202] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 09/04/2023] [Indexed: 10/10/2023]
Abstract
Nitrogen is one of the most important nutrients for tea plants, as it contributes significantly to tea yield and serves as the component of amino acids, which in turn affects the quality of tea produced. To achieve higher yields, excessive amounts of N fertilizers mainly in the form of urea have been applied in tea plantations where N fertilizer is prone to convert to nitrate and be lost by leaching in the acid soils. This usually results in elevated costs and environmental pollution. A comprehensive understanding of N metabolism in tea plants and the underlying mechanisms is necessary to identify the key regulators, characterize the functional phenotypes, and finally improve nitrogen use efficiency (NUE). Tea plants absorb and utilize ammonium as the preferred N source, thus a large amount of nitrate remains activated in soils. The improvement of nitrate utilization by tea plants is going to be an alternative aspect for NUE with great potentiality. In the process of N assimilation, nitrate is reduced to ammonium and subsequently derived to the GS-GOGAT pathway, involving the participation of nitrate reductase (NR), nitrite reductase (NiR), glutamine synthetase (GS), glutamate synthase (GOGAT), and glutamate dehydrogenase (GDH). Additionally, theanine, a unique amino acid responsible for umami taste, is biosynthesized by the catalysis of theanine synthetase (TS). In this review, we summarize what is known about the regulation and functioning of the enzymes and transporters implicated in N acquisition and metabolism in tea plants and the current methods for assessing NUE in this species. The challenges and prospects to expand our knowledge on N metabolism and related molecular mechanisms in tea plants which could be a model for woody perennial plant used for vegetative harvest are also discussed to provide the theoretical basis for future research to assess NUE traits more precisely among the vast germplasm resources, thus achieving NUE improvement.
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Affiliation(s)
- Wenjing Zhang
- Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing, China
| | - Kang Ni
- Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
- Xihu National Agricultural Experimental Station for Soil Quality, Hangzhou, China
| | - Lizhi Long
- Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
| | - Jianyun Ruan
- Key Laboratory of Tea Plant Biology and Resources Utilization, Ministry of Agriculture, Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China
- Xihu National Agricultural Experimental Station for Soil Quality, Hangzhou, China
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Qiao J, Liao Y, Yin C, Yang X, Tú HM, Wang W, Liu Y. Vigour testing for the rice seed with computer vision-based techniques. FRONTIERS IN PLANT SCIENCE 2023; 14:1194701. [PMID: 37794935 PMCID: PMC10545894 DOI: 10.3389/fpls.2023.1194701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 08/28/2023] [Indexed: 10/06/2023]
Abstract
Rice is the staple food for approximately half of the world's population. Seed vigour has a crucial impact on the yield, which can be evaluated by germination rate, vigor index and etc. Existing seed vigour testing methods heavily rely on manual inspections that are destructive, time-consuming, and labor-intensive. To address the drawbacks of existing rice seed vigour testing, we proposed a multispectral image-based non-destructive seed germination testing approach. Specifically, we collected multispectral data in 19 wavebands for six rice varieties. Furthermore, we designed an end-to-end pipeline, denoted as MsiFormer (MisFormer cod3e will be available at https://github.com/LiaoYun0x0/MisFormer) by integrating a Yolo-based object detector (trained Yolo v5) and a vision transformer-based vigour testing model, which effectively improved the automation and efficiency of existing techniques. In order to objectively evaluate the performance of the proposed method in this paper, we conduct a comparison between MisFormer and other 3 deep learning methods. The results showed that, MisFormer performed much better with the accuracy of 94.17%, which was 2.5%-18.34% higher than the other 3 deep learning methods. Besides MsiFormer, possibilities of CIELab mediated image analysis of TTC (tetrazolium chloride) staining in rice seed viability and nCDA (normalized canonical discriminant analysis) in rice seed vigour were also discussed, where CIELab L* of TTC staining were negatively correlated with vigor index and germination rate, with Pearson's correlation coefficient of -0.9874, -0.9802 respectively, and CIELab A* of TTC staining were and positively correlated with vigor index and germination rate, with Pearson's correlation coefficient of 0.9624, 0.9544 respectively, and CIELab A* of nCDA had Pearson's correlation coefficient of -0.8866 and -0.9340 with vigor index and germination rate, respectively. Besides testing methods, vigour results within and among variety(ies) showed that, there were great variations among the 6 rice varieties, and mean coefficient of variation (CV) of vigor index of individual seed within a variety reached 64.87%, revealing the high risk of conventional methods in random sampling. Vigour variations had close relationship with wavelengths of 780 nm-970 nm, indicating their value in future research.
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Affiliation(s)
- Juxiang Qiao
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| | - Yun Liao
- Software School, Yunnan University, Kunming, China
| | - Changsheng Yin
- Seed Management Station of Yunnan Province, Kunming, China
| | - Xiaohong Yang
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| | - Hoàng Minh Tú
- National Center for Testing and Testing of Plant Seeds and Products, Hanoi, Vietnam
| | - Wei Wang
- Software School, Yunnan University, Kunming, China
| | - Yanfang Liu
- Quality Standard and Testing Technology Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
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7
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Zhou M, Yang J. Delaying or promoting? Manipulation of leaf senescence to improve crop yield and quality. PLANTA 2023; 258:48. [PMID: 37477756 DOI: 10.1007/s00425-023-04204-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Accepted: 07/11/2023] [Indexed: 07/22/2023]
Abstract
MAIN CONCLUSION Senescence influences leaf productivity through two aspects: photosynthesis and nutrient remobilization. Through distinctively manipulating progress of leaf senescence, it is promising to improve crop yield and quality simultaneously. Crop yield and quality are two chief goals pursued in agricultural and horticultural production. The basis of crop yield is leaf photosynthesis. Senescence is the last stage of leaf development, which usually causes decreasing of leaf photosynthetic activity. Delaying leaf senescence through physiological or molecular strategies may result in higher photosynthetic activity with a longer duration, thus producing more photoassimilates for biomass accumulation. On the other side, leaf senescence always induces degradation of macromolecular nutrients (including chlorophylls and proteins), and nutritional elements in leaves are then resorbed for development of other organs. For those crops with non-leaf organs as harvested biomass, translocating nutritional elements from leaves to harvested biomass is an indispensable physiological process to increase crop yield and quality. This review summarized successful studies about effects of delaying or promoting senescence on crop yield or quality improvement. Considering the distinctiveness of various crops, manipulation of leaf senescence should be specialized during agricultural and horticultural practices. Rational regulation of leaf senescence, such as inhibiting senescence to maintain leaf photosynthesis and then promoting senescence (with appropriate onset and efficiency) to remobilize more nutrients from leaves to target organs, may ultimately improve both crop yield and quality.
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Affiliation(s)
- Min Zhou
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China
| | - Jiading Yang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, China.
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Lin LY, Chow HX, Chen CH, Mitsuda N, Chou WC, Liu TY. Role of autophagy-related proteins ATG8f and ATG8h in the maintenance of autophagic activity in Arabidopsis roots under phosphate starvation. FRONTIERS IN PLANT SCIENCE 2023; 14:1018984. [PMID: 37434600 PMCID: PMC10331476 DOI: 10.3389/fpls.2023.1018984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 05/23/2023] [Indexed: 07/13/2023]
Abstract
Nutrient starvation-induced autophagy is a conserved process in eukaryotes. Plants defective in autophagy show hypersensitivity to carbon and nitrogen limitation. However, the role of autophagy in plant phosphate (Pi) starvation response is relatively less explored. Among the core autophagy-related (ATG) genes, ATG8 encodes a ubiquitin-like protein involved in autophagosome formation and selective cargo recruitment. The Arabidopsis thaliana ATG8 genes, AtATG8f and AtATG8h, are notably induced in roots under low Pi. In this study, we show that such upregulation correlates with their promoter activities and can be suppressed in the phosphate response 1 (phr1) mutant. Yeast one-hybrid analysis failed to attest the binding of the AtPHR1 transcription factor to the promoter regions of AtATG8f and AtATG8h. Dual luciferase reporter assays in Arabidopsis mesophyll protoplasts also indicated that AtPHR1 could not transactivate the expression of both genes. Loss of AtATG8f and AtATG8h leads to decreased root microsomal-enriched ATG8 but increased ATG8 lipidation. Moreover, atg8f/atg8h mutants exhibit reduced autophagic flux estimated by the vacuolar degradation of ATG8 in the Pi-limited root but maintain normal cellular Pi homeostasis with reduced number of lateral roots. While the expression patterns of AtATG8f and AtATG8h overlap in the root stele, AtATG8f is more strongly expressed in the root apex and root hair and remarkably at sites where lateral root primordia develop. We hypothesize that Pi starvation-induction of AtATG8f and AtATG8h may not directly contribute to Pi recycling but rely on a second wave of transcriptional activation triggered by PHR1 that fine-tunes cell type-specific autophagic activity.
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Affiliation(s)
- Li-Yen Lin
- Institute of Bioinformatics and Structural Biology, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
| | - Hong-Xuan Chow
- Institute of Bioinformatics and Structural Biology, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
| | - Chih-Hao Chen
- Institute of Bioinformatics and Structural Biology, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
| | - Nobutaka Mitsuda
- Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
| | - Wen-Chun Chou
- Institute of Bioinformatics and Structural Biology, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
| | - Tzu-Yin Liu
- Institute of Bioinformatics and Structural Biology, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
- Department of Life Science, College of Life Sciences and Medicine, National Tsing Hua University, Hsinchu, Taiwan
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9
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Chang M, Ma J, Sun Y, Fu M, Liu L, Chen Q, Zhang Z, Song C, Sun J, Wan X. Role of Endophytic Bacteria in the Remobilization of Leaf Nitrogen Mediated by CsEGGT in Tea Plants ( Camellia sinensis L.). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:5208-5218. [PMID: 36970979 DOI: 10.1021/acs.jafc.2c08909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
As an important economic plant, tea (Camellia sinensis) has a good economic value and significant health effects. Theanine is an important nitrogen reservoir, and its synthesis and degradation are considered important for nitrogen storage and remobilization in tea plants. Our previous research indicated that the endophyte CsE7 participates in the synthesis of theanine in tea plants. Here, the tracking test confirmed that CsE7 tended to be exposed to mild light and preferentially colonized mature tea leaves. CsE7 also participated in glutamine, theanine, and glutamic acid circulatory metabolism (Gln-Thea-Glu) and contributed to nitrogen remobilization, mediated by the γ-glutamyl-transpeptidase (CsEGGT) with hydrolase preference. The reisolation and inoculation of endophytes further verified their role in accelerating the remobilization of nitrogen, especially in the reuse of theanine and glutamine. This is the first report about the photoregulated endophytic colonization and the positive effect of endophytes on tea plants mediated and characterized by promoting leaf nitrogen remobilization.
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Affiliation(s)
- Manman Chang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Jingyu Ma
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Ying Sun
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Maoyin Fu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Linlin Liu
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Qi Chen
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Zhaoliang Zhang
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Chuankui Song
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Jun Sun
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
- College of Horticulture, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
| | - Xiaochun Wan
- State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 West Changjiang Road, Hefei City, Anhui Province 230036, P. R. China
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10
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Ahouvi Y, Haber Z, Zach YY, Rosental L, Toubiana D, Sharma D, Alseekh S, Tajima H, Fernie AR, Brotman Y, Blumwald E, Sade N. The Alteration of Tomato Chloroplast Vesiculation Positively Affects Whole-Plant Source-Sink Relations and Fruit Metabolism under Stress Conditions. PLANT & CELL PHYSIOLOGY 2023; 63:2008-2026. [PMID: 36161338 DOI: 10.1093/pcp/pcac133] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 09/14/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Changes in climate conditions can negatively affect the productivity of crop plants. They can induce chloroplast degradation (senescence), which leads to decreased source capacity, as well as decreased whole-plant carbon/nitrogen assimilation and allocation. The importance, contribution and mechanisms of action regulating source-tissue capacity under stress conditions in tomato (Solanum lycopersicum) are not well understood. We hypothesized that delaying chloroplast degradation by altering the activity of the tomato chloroplast vesiculation (CV) under stress would lead to more efficient use of carbon and nitrogen and to higher yields. Tomato CV is upregulated under stress conditions. Specific induction of CV in leaves at the fruit development stage resulted in stress-induced senescence and negatively affected fruit yield, without any positive effects on fruit quality. Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-associated protein 9 (CRISPR/CAS9) knockout CV plants, generated using a near-isogenic tomato line with enhanced sink capacity, exhibited stress tolerance at both the vegetative and the reproductive stages, leading to enhanced fruit quantity, quality and harvest index. Detailed metabolic and transcriptomic network analysis of sink tissue revealed that the l-glutamine and l-arginine biosynthesis pathways are associated with stress-response conditions and also identified putative novel genes involved in tomato fruit quality under stress. Our results are the first to demonstrate the feasibility of delayed stress-induced senescence as a stress-tolerance trait in a fleshy fruit crop, to highlight the involvement of the CV pathway in the regulation of source strength under stress and to identify genes and metabolic pathways involved in increased tomato sink capacity under stress conditions.
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Affiliation(s)
- Yoav Ahouvi
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
| | - Zechariah Haber
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
| | - Yair Yehoshua Zach
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
| | - Leah Rosental
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O.B. 653, 1 David Ben Gurion Blvd., Beer-Sheva 8410501, Israel
| | - David Toubiana
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
| | - Davinder Sharma
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
| | - Saleh Alseekh
- Department of Root Biology and Symbiosis, Max Planck Institute of Molecular Plant Physiology, 1 Am Mühlenberg, Golm, Potsdam 14476, Germany
- Department of Plant Metabolomics, Center for Plant Systems Biology and Biotechnology, 139 Ruski Blvd., Plovdiv 4000, Bulgaria
| | - Hiromi Tajima
- Department of Plant Sciences, University of California, 1 Shields Ave., Davis, CA 95616, USA
| | - Alisdair R Fernie
- Department of Root Biology and Symbiosis, Max Planck Institute of Molecular Plant Physiology, 1 Am Mühlenberg, Golm, Potsdam 14476, Germany
- Department of Plant Metabolomics, Center for Plant Systems Biology and Biotechnology, 139 Ruski Blvd., Plovdiv 4000, Bulgaria
| | - Yariv Brotman
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O.B. 653, 1 David Ben Gurion Blvd., Beer-Sheva 8410501, Israel
| | - Eduardo Blumwald
- Department of Plant Sciences, University of California, 1 Shields Ave., Davis, CA 95616, USA
| | - Nir Sade
- School of Plant Sciences and Food Security, Tel Aviv University, P.O.B. 39040, 55 Haim Levanon St., Tel Aviv 6139001, Israel
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11
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Li W, Wang K, Han G, Wang H, Tan N, Yan Z. Integrated diagnosis and time-series sensitivity evaluation of nutrient deficiencies in medicinal plant ( Ligusticum chuanxiong Hort.) based on UAV multispectral sensors. FRONTIERS IN PLANT SCIENCE 2023; 13:1092610. [PMID: 36704174 PMCID: PMC9871506 DOI: 10.3389/fpls.2022.1092610] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 12/20/2022] [Indexed: 06/18/2023]
Abstract
BACKGROUND Nitrogen(N), phosphorus(P), and potassium(K) are essential elements that are highly deficient during plant growth. Existing diagnostic methods are not suitable for rapid diagnosis of large-scale planting areas. Near-ground remote sensing technology based on unmanned aerial vehicle (UAV) and sensor is often applied to crop growth condition monitoring and agricultural management. It has been proven to be used for monitoring plant N, P, and K content. However, its integrated diagnostic model has been less studied. METHODS In this study, we collected UAV multispectral images of Ligusticum chuanxiong Hort. in different periods of nutritional stress and constructed recognition models with different heights and algorithms. The optimal model variables were selected, and the effects of different sampling heights and modeling algorithms on the model efficiency under the time span were evaluated. At the same time, we evaluated the timeliness of the model based on leaf element content determination and SPAD. It was also validated in field crop production. RESULTS The results showed that the LR algorithm's model had optimal performance at all periods and flight altitudes. The optimal accuracy of N-deficient plants identification reached 100%, P/K-deficient plants reached 92.4%, and normal plants reached 91.7%. The results of UAV multispectral diagnosis, chemical diagnosis, and SPAD value diagnosis were consistent in the diagnosis of N deficiency, and the diagnosis of P and K deficiency was slightly lagging behind that of chemical diagnosis. CONCLUSIONS This research uses UAV remote sensing technology to establish an efficient, fast, and timely nutritional diagnosis method for L. Chuanxiong, which is applied in production. Meanwhile, the standardized production of medicinal plant resources provides new solutions.
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Affiliation(s)
- Wenbo Li
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Ke Wang
- School of Big Data and Artificial Intelligence, Chengdu Technological University, Chengdu, China
| | - Guiqi Han
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Hai Wang
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, China
| | - Ningbo Tan
- School of Big Data and Artificial Intelligence, Chengdu Technological University, Chengdu, China
| | - Zhuyun Yan
- State Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, China
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12
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Burgess AJ, Masclaux‐Daubresse C, Strittmatter G, Weber APM, Taylor SH, Harbinson J, Yin X, Long S, Paul MJ, Westhoff P, Loreto F, Ceriotti A, Saltenis VLR, Pribil M, Nacry P, Scharff LB, Jensen PE, Muller B, Cohan J, Foulkes J, Rogowsky P, Debaeke P, Meyer C, Nelissen H, Inzé D, Klein Lankhorst R, Parry MAJ, Murchie EH, Baekelandt A. Improving crop yield potential: Underlying biological processes and future prospects. Food Energy Secur 2022; 12:e435. [PMID: 37035025 PMCID: PMC10078444 DOI: 10.1002/fes3.435] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 10/07/2022] [Accepted: 11/10/2022] [Indexed: 12/05/2022] Open
Abstract
The growing world population and global increases in the standard of living both result in an increasing demand for food, feed and other plant-derived products. In the coming years, plant-based research will be among the major drivers ensuring food security and the expansion of the bio-based economy. Crop productivity is determined by several factors, including the available physical and agricultural resources, crop management, and the resource use efficiency, quality and intrinsic yield potential of the chosen crop. This review focuses on intrinsic yield potential, since understanding its determinants and their biological basis will allow to maximize the plant's potential in food and energy production. Yield potential is determined by a variety of complex traits that integrate strictly regulated processes and their underlying gene regulatory networks. Due to this inherent complexity, numerous potential targets have been identified that could be exploited to increase crop yield. These encompass diverse metabolic and physical processes at the cellular, organ and canopy level. We present an overview of some of the distinct biological processes considered to be crucial for yield determination that could further be exploited to improve future crop productivity.
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Affiliation(s)
- Alexandra J. Burgess
- School of Biosciences University of Nottingham, Sutton Bonington campus Loughborough UK
| | | | - Günter Strittmatter
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS) Heinrich‐Heine‐Universität Düsseldorf Düsseldorf Germany
| | - Andreas P. M. Weber
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS) Heinrich‐Heine‐Universität Düsseldorf Düsseldorf Germany
| | | | - Jeremy Harbinson
- Laboratory for Biophysics Wageningen University and Research Wageningen The Netherlands
| | - Xinyou Yin
- Centre for Crop Systems Analysis, Department of Plant Sciences Wageningen University & Research Wageningen The Netherlands
| | - Stephen Long
- Lancaster Environment Centre Lancaster University Lancaster UK
- Plant Biology and Crop Sciences University of Illinois at Urbana‐Champaign Urbana Illinois USA
| | | | - Peter Westhoff
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences (CEPLAS) Heinrich‐Heine‐Universität Düsseldorf Düsseldorf Germany
| | - Francesco Loreto
- Department of Biology, Agriculture and Food Sciences, National Research Council of Italy (CNR), Rome, Italy and University of Naples Federico II Napoli Italy
| | - Aldo Ceriotti
- Institute of Agricultural Biology and Biotechnology National Research Council (CNR) Milan Italy
| | - Vandasue L. R. Saltenis
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences University of Copenhagen Copenhagen Denmark
| | - Mathias Pribil
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences University of Copenhagen Copenhagen Denmark
| | - Philippe Nacry
- BPMP, Univ Montpellier, INRAE, CNRS Institut Agro Montpellier France
| | - Lars B. Scharff
- Copenhagen Plant Science Centre, Department of Plant and Environmental Sciences University of Copenhagen Copenhagen Denmark
| | - Poul Erik Jensen
- Department of Food Science University of Copenhagen Copenhagen Denmark
| | - Bertrand Muller
- Université de Montpellier ‐ LEPSE – INRAE Institut Agro Montpellier France
| | | | - John Foulkes
- School of Biosciences University of Nottingham, Sutton Bonington campus Loughborough UK
| | - Peter Rogowsky
- INRAE UMR Plant Reproduction and Development Lyon France
| | | | - Christian Meyer
- IJPB UMR1318 INRAE‐AgroParisTech‐Université Paris Saclay Versailles France
| | - Hilde Nelissen
- Department of Plant Biotechnology and Bioinformatics Ghent University Ghent Belgium
- VIB Center for Plant Systems Biology Ghent Belgium
| | - Dirk Inzé
- Department of Plant Biotechnology and Bioinformatics Ghent University Ghent Belgium
- VIB Center for Plant Systems Biology Ghent Belgium
| | - René Klein Lankhorst
- Wageningen Plant Research Wageningen University & Research Wageningen The Netherlands
| | | | - Erik H. Murchie
- School of Biosciences University of Nottingham, Sutton Bonington campus Loughborough UK
| | - Alexandra Baekelandt
- Department of Plant Biotechnology and Bioinformatics Ghent University Ghent Belgium
- VIB Center for Plant Systems Biology Ghent Belgium
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13
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Fei L, Zuo S, Zhang J, Wang Z. Phytoextraction by harvesting dead leaves: cadmium accumulation associated with the leaf senescence in Festuca arundinacea Schreb. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:79214-79223. [PMID: 35710964 DOI: 10.1007/s11356-022-21104-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Accepted: 05/22/2022] [Indexed: 06/15/2023]
Abstract
Phytoextraction strategy by harvesting dead leaves provides continuous phytoremediation and a great saving in disposal cost of hazardous plant residues. This strategy is entirely dependent upon the amount of cadmium (Cd) accumulated in dead leaves. However, it is unknown that whether the leaf Cd accumulation is associated with its senescence and how to regulate its Cd accumulation. This study showed that Cd was preferentially and consistently distributed to and accumulated in the senescent leaves with the new leaf emergence and the old leaf dieback under 75 μM of Cd stress in tall fescue (Festuca arundinacea Schreb.). Individual leaf monitoring from its emergence to senescence showed that Cd concentration increased exponentially with the leaf life cycle, while leaf biomass decreased gradually after 14 days of leaf emergence. The total amount of Cd accumulated in the leaf showed an exponential increase during leaf senescence, regardless of the leaf biomass loss. Our results demonstrated that leaf Cd accumulation was significantly associated with its senescence and the highest Cd accumulated in dead leaves could be contributed from the continuous Cd input during the leaf senescent process, indicating that further regulatory studies should be focused on the leaf senescence process to achieve higher Cd accumulation and phytoextraction efficiency by harvesting dead leaves.
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Affiliation(s)
- Ling Fei
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai, 200240, People's Republic of China
- Zhuhai College of Jilin University, Zhuhai, Guangdong, 519041, People's Republic of China
| | - ShaoFan Zuo
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai, 200240, People's Republic of China
| | - JiaXin Zhang
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai, 200240, People's Republic of China
| | - ZhaoLong Wang
- School of Agriculture and Biology, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai, 200240, People's Republic of China.
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14
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Zhao W, Zhao H, Wang H, He Y. Research progress on the relationship between leaf senescence and quality, yield and stress resistance in horticultural plants. FRONTIERS IN PLANT SCIENCE 2022; 13:1044500. [PMID: 36352873 PMCID: PMC9638160 DOI: 10.3389/fpls.2022.1044500] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 10/12/2022] [Indexed: 06/16/2023]
Abstract
Leaf senescence, the final stage of leaf development, is one of the adaptive mechanisms formed by plants over a long period of evolution. Leaf senescence is accompanied by various changes in cell structure, physiological metabolism, and gene expressions. This process is controlled by a variety of internal and external factors. Meanwhile, the genes and plant hormones involved in leaf aging affect the quality, yield and stress resistance in horticultural plants. Leaf senescence mediated by plant hormones affected plant quality at both pre-harvest and post-harvest stages. Exogenous plant growth regulators or plant hormone inhibitors has been applied to delay leaf senescence. Modification of related gene expression by over-expression or antisense inhibition could delay or accelerate leaf senescence, and thus influence quality. Environmental factors such as light, temperature and water status also trigger or delay leaf senescence. Delaying leaf senescence could increase chloroplast lifespan and photosynthesis and thus improve source strength, leading to enhanced yield. Accelerating leaf senescence promotes nutrient redistribution from old leaves into young leaves, and may raise yield under certain circumstances. Many genes and transcriptional factors involved in leaf senescence are associated with responses to abiotic and biotic stresses. WRKY transcriptional factors play a vital role in this process and they could interact with JA signalling. This review summarized how genes, plant hormones and environmental factors affect the quality, yield. Besides, the regulation of leaf senescence holds great promise to improving the resistance to plant biotic and abiotic stresses.
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Affiliation(s)
- Wenxue Zhao
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticultural Science, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou, China
| | - Huayuan Zhao
- Bashan Management Area of the Management Committee for Taishan Historic and Scenic Area in Tai’an City, Tai’an, China
| | - Huasen Wang
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticultural Science, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou, China
| | - Yong He
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas of Zhejiang Province, College of Horticultural Science, Zhejiang Agriculture and Forest University, Lin'an, Hangzhou, China
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15
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Yang X, Wang G, Lei S, Li Z, Zeng B. Substance accumulation of a wetland plant, Leersia japonica, during senescence in the Yihe and Shuhe River Basin, North China. FRONTIERS IN PLANT SCIENCE 2022; 13:996587. [PMID: 36311123 PMCID: PMC9608780 DOI: 10.3389/fpls.2022.996587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Leersia japonica is a perennial Gramineae grass that is dominant in shallow wetlands of the Yihe and Shuhe River Basin, North China. Previous studies have shown that L. japonica recovers early (March), tillers strongly, and has an excellent ability to purify sewage in spring. This early revival might play a vital role in water purification function; however, whether the plant benefits from the physiological activities during senescence remains unclear. Therefore, in this study, an experiment was conducted during the winter of 2016 and in the following spring. Morphology (height, biomass, root morphology), physiology (root vitality, malondialdehyde [MDA], superoxide dismutase [SOD]), substance contents (soluble sugar, soluble protein) and substance transportation (activity of enzymes for transportation and energy supply) were determined during weeks 0, 2, 4, 6, and 8 of the senescence stage (October 11, 2016); as well as substance contents and bud increments during days 0,7, 14, 21, 31 and 41 of the revival period (February 22, 2017). The results revealed that (1) the root biomass of L. japonica increased significantly during senescence, even after the leaves withered. (2) The root diameter of L. japonica decreased significantly, while root weight per volume and root superficial area per volume increased significantly during senescence. The root vitality was relatively stable in winter, especially for root absorption area per volume. (3) No significant difference was observed in membrane stability of stems, rhizomes and roots of L. japonica in winter, with the MDA content remaining stable and SOD activity increasing significantly during senescence. (4) The soluble sugar content of all tissues of L. japonica increased sharply during senescence; while it decreased significantly in spring, especially for buds. (5) The enzymes for substance metabolism responded differently, with activities of H+-ATPase and pyruvate decarboxylase (PDC) decreasing, and alcohol dehydrogenase (ADH) increasing. Therefore, L. japonica has active morphological adaptation of roots, physiological regulation, and massive substance accumulation during senescence stage. The special life-history trait ensures L. japonica survival in winter and revival in early spring, which makes it being an excellent plant for purifying sewage in spring.
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Affiliation(s)
- Xiuyi Yang
- College of Agriculture and Forestry Science/Library; Linyi University, Linyi, China
| | - Guanqun Wang
- College of Agriculture and Forestry Science/Library; Linyi University, Linyi, China
| | - Shutong Lei
- College of Agriculture and Forestry Science/Library; Linyi University, Linyi, China
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region, Ministry of Education, Faculty of Life Science, Southwest University, Chongqing, China
| | - Zongfeng Li
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region, Ministry of Education, Faculty of Life Science, Southwest University, Chongqing, China
| | - Bo Zeng
- Key Laboratory of Eco-Environment in the Three Gorges Reservoir Region, Ministry of Education, Faculty of Life Science, Southwest University, Chongqing, China
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16
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Chattha MS, Ali Q, Haroon M, Afzal MJ, Javed T, Hussain S, Mahmood T, Solanki MK, Umar A, Abbas W, Nasar S, Schwartz-Lazaro LM, Zhou L. Enhancement of nitrogen use efficiency through agronomic and molecular based approaches in cotton. FRONTIERS IN PLANT SCIENCE 2022; 13:994306. [PMID: 36237509 PMCID: PMC9552886 DOI: 10.3389/fpls.2022.994306] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 08/22/2022] [Indexed: 05/22/2023]
Abstract
Cotton is a major fiber crop grown worldwide. Nitrogen (N) is an essential nutrient for cotton production and supports efficient crop production. It is a crucial nutrient that is required more than any other. Nitrogen management is a daunting task for plants; thus, various strategies, individually and collectively, have been adopted to improve its efficacy. The negative environmental impacts of excessive N application on cotton production have become harmful to consumers and growers. The 4R's of nutrient stewardship (right product, right rate, right time, and right place) is a newly developed agronomic practice that provides a solid foundation for achieving nitrogen use efficiency (NUE) in cotton production. Cropping systems are equally crucial for increasing production, profitability, environmental growth protection, and sustainability. This concept incorporates the right fertilizer source at the right rate, time, and place. In addition to agronomic practices, molecular approaches are equally important for improving cotton NUE. This could be achieved by increasing the efficacy of metabolic pathways at the cellular, organ, and structural levels and NUE-regulating enzymes and genes. This is a potential method to improve the role of N transporters in plants, resulting in better utilization and remobilization of N in cotton plants. Therefore, we suggest effective methods for accelerating NUE in cotton. This review aims to provide a detailed overview of agronomic and molecular approaches for improving NUE in cotton production, which benefits both the environment and growers.
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Affiliation(s)
- Muhammad Sohaib Chattha
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
- School of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Qurban Ali
- Laboratory of Integrated Management of Crop Diseases and Pests, Department of Plant Pathology, College of Plant Protection, Ministry of Education, Nanjing Agricultural University, Nanjing, China
| | - Muhammad Haroon
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China
| | | | - Talha Javed
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Sadam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Tahir Mahmood
- Department of Plant Breeding & Genetics, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
| | - Manoj K. Solanki
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Aisha Umar
- Institute of Botany, University of the Punjab, Lahore, Pakistan
| | - Waseem Abbas
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, China
| | - Shanza Nasar
- Department of Botany, University of Gujrat Hafiz Hayat Campus, Gujrat, Pakistan
| | - Lauren M. Schwartz-Lazaro
- School of Plant, Environmental and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Lei Zhou
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Institute of Agro-Product Safety and Nutrition, Zhejiang Academy of Agricultural Sciences, Hangzhou, China
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17
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Gippert AL, Madritsch S, Woryna P, Otte S, Mayrhofer M, Eigner H, Garibay-Hernández A, D'Auria JC, Molin EM, Mock HP. Unraveling metabolic patterns and molecular mechanisms underlying storability in sugar beet. BMC PLANT BIOLOGY 2022; 22:430. [PMID: 36076171 PMCID: PMC9461268 DOI: 10.1186/s12870-022-03784-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Accepted: 07/29/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Sugar beet is an important crop for sugar production. Sugar beet roots are stored up to several weeks post-harvest waiting for processing in the sugar factories. During this time, sucrose loss and invert sugar accumulation decreases the final yield and processing quality. To improve storability, more information about post-harvest metabolism is required. We investigated primary and secondary metabolites of six sugar beet varieties during storage. Based on their variety-specific sucrose loss, three storage classes representing well, moderate, and bad storability were compared. Furthermore, metabolic data were visualized together with transcriptome data to identify potential mechanisms involved in the storage process. RESULTS We found that sugar beet varieties that performed well during storage have higher pools of 15 free amino acids which were already observable at harvest. This storage class-specific feature is visible at harvest as well as after 13 weeks of storage. The profile of most of the detected organic acids and semi-polar metabolites changed during storage. Only pyroglutamic acid and two semi-polar metabolites, including ferulic acid, show higher levels in well storable varieties before and/or after 13 weeks of storage. The combinatorial OMICs approach revealed that well storable varieties had increased downregulation of genes involved in amino acid degradation before and after 13 weeks of storage. Furthermore, we found that most of the differentially genes involved in protein degradation were downregulated in well storable varieties at both timepoints, before and after 13 weeks of storage. CONCLUSIONS Our results indicate that increased levels of 15 free amino acids, pyroglutamic acid and two semi-polar compounds, including ferulic acid, were associated with a better storability of sugar beet taproots. Predictive metabolic patterns were already apparent at harvest. With respect to elongated storage, we highlighted the role of free amino acids in the taproot. Using complementary transcriptomic data, we could identify potential underlying mechanisms of sugar beet storability. These include the downregulation of genes for amino acid degradation and metabolism as well as a suppressed proteolysis in the well storable varieties.
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Affiliation(s)
- Anna-Lena Gippert
- IPK Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Silvia Madritsch
- AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Tulln, Austria
| | - Patrick Woryna
- AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Tulln, Austria
| | - Sandra Otte
- Strube Research GmbH & Co. KG, Söllingen, Germany
| | | | - Herbert Eigner
- AGRANA Research & Innovation Center GmbH, Tulln, Austria
| | | | - John C D'Auria
- IPK Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Eva M Molin
- AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Tulln, Austria.
| | - Hans-Peter Mock
- IPK Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.
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18
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Zhou J, Yang LY, Jia CL, Shi WG, Deng SR, Luo ZB. Identification and Functional Prediction of Poplar Root circRNAs Involved in Treatment With Different Forms of Nitrogen. FRONTIERS IN PLANT SCIENCE 2022; 13:941380. [PMID: 35874008 PMCID: PMC9305699 DOI: 10.3389/fpls.2022.941380] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
Abstract
Circular RNAs (circRNAs) are a class of noncoding RNA molecules with ring structures formed by covalent bonds and are commonly present in organisms, playing an important regulatory role in plant growth and development. However, the mechanism of circRNAs in poplar root responses to different forms of nitrogen (N) is still unclear. In this study, high-throughput sequencing was used to identify and predict the function of circRNAs in the roots of poplar exposed to three N forms [1 mM NO3 - (T1), 0.5 mM NH4NO3 (T2, control) and 1 mM NH4 + (T3)]. A total of 2,193 circRNAs were identified, and 37, 24 and 45 differentially expressed circRNAs (DECs) were screened in the T1-T2, T3-T2 and T1-T3 comparisons, respectively. In addition, 30 DECs could act as miRNA sponges, and several of them could bind miRNA family members that play key roles in response to different N forms, indicating their important functions in response to N and plant growth and development. Furthermore, we generated a competing endogenous RNA (ceRNA) regulatory network in poplar roots treated with three N forms. DECs could participate in responses to N in poplar roots through the ceRNA regulatory network, which mainly included N metabolism, amino acid metabolism and synthesis, response to NO3 - or NH4 + and remobilization of N. Together, these results provide new insights into the potential role of circRNAs in poplar root responses to different N forms.
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Niñoles R, Ruiz-Pastor CM, Arjona-Mudarra P, Casañ J, Renard J, Bueso E, Mateos R, Serrano R, Gadea J. Transcription Factor DOF4.1 Regulates Seed Longevity in Arabidopsis via Seed Permeability and Modulation of Seed Storage Protein Accumulation. FRONTIERS IN PLANT SCIENCE 2022; 13:915184. [PMID: 35845633 PMCID: PMC9284063 DOI: 10.3389/fpls.2022.915184] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 05/23/2022] [Indexed: 05/30/2023]
Abstract
Seed longevity is modulated by multiple genetic factors in Arabidopsis thaliana. A previous genome-wide association study using the Elevated Partial Pressure of Oxygen (EPPO) aging assay pinpointed a genetic locus associated with this trait. Reverse genetics identified the transcription factor DOF4.1 as a novel seed longevity factor. dof4.1 loss-of-function plants generate seeds exhibiting higher germination after accelerated aging assays. DOF4.1 is expressed during seed development and RNAseq data show several putative factors that could contribute to the dof4.1 seed longevity phenotype. dof4.1 has reduced seed permeability and a higher levels of seed storage proteins mRNAs (cruciferins and napins) in developing seeds, as compared to wild-type seeds. It has been reported that mutant lines defective in cruciferins or napins present reduced seed longevity. The improved longevity of dof4.1 is totally lost in the quadruple mutant dof4.1 cra crb crc, but not in a dof4.1 line depleted of napins, suggesting a prominent role for cruciferins in this process. Moreover, a negative regulation of DOF4.1 expression by the transcription factor DOF1.8 is suggested by co-inoculation assays in Nicotiana benthamiana. Indeed, DOF1.8 expression anticorrelates with that of DOF4.1 during seed development. In summary, modulation of DOF4.1 levels during seed development contributes to regulate seed longevity.
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Affiliation(s)
- Regina Niñoles
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, Ciudad Politécnica de la Innovación, Valencia, Spain
| | | | | | | | | | | | | | | | - Jose Gadea
- Instituto de Biología Molecular y Celular de Plantas, Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, Ciudad Politécnica de la Innovación, Valencia, Spain
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20
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Sabharwal T, Lu Z, Slocum RD, Kang S, Wang H, Jiang HW, Veerappa R, Romanovicz D, Nam JC, Birk S, Clark G, Roux SJ. Constitutive expression of a pea apyrase, psNTP9, increases seed yield in field-grown soybean. Sci Rep 2022; 12:10870. [PMID: 35760854 PMCID: PMC9237067 DOI: 10.1038/s41598-022-14821-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 06/13/2022] [Indexed: 12/02/2022] Open
Abstract
To address the demand for food by a rapidly growing human population, agricultural scientists have carried out both plant breeding and genetic engineering research. Previously, we reported that the constitutive expression of a pea apyrase (Nucleoside triphosphate, diphosphohydrolase) gene, psNTP9, under the control of the CaMV35S promoter, resulted in soybean plants with an expanded root system architecture, enhanced drought resistance and increased seed yield when they are grown in greenhouses under controlled conditions. Here, we report that psNTP9-expressing soybean lines also show significantly enhanced seed yields when grown in multiple different field conditions at multiple field sites, including when the gene is introgressed into elite germplasm. The transgenic lines have higher leaf chlorophyll and soluble protein contents and decreased stomatal density and cuticle permeability, traits that increase water use efficiency and likely contribute to the increased seed yields of field-grown plants. These altered properties are explained, in part, by genome-wide gene expression changes induced by the transgene.
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Affiliation(s)
- Tanya Sabharwal
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | | | - Robert D Slocum
- Program in Biological Sciences, Goucher College, Towson, MD, 21204, USA
| | - Seongjoon Kang
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Huan Wang
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Han-Wei Jiang
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Roopadarshini Veerappa
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Dwight Romanovicz
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Ji Chul Nam
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Simon Birk
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Greg Clark
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA
| | - Stanley J Roux
- Department of Molecular Biosciences, The University of Texas at Austin, Austin, TX, 78712, USA.
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21
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Guo S, Arshad A, Yang L, Qin Y, Mu X, Mi G. Comparative Transcriptome Analysis Reveals Common and Developmental Stage-Specific Genes That Respond to Low Nitrogen in Maize Leaves. PLANTS 2022; 11:plants11121550. [PMID: 35736701 PMCID: PMC9230787 DOI: 10.3390/plants11121550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 06/04/2022] [Accepted: 06/04/2022] [Indexed: 11/16/2022]
Abstract
A growing leaf can be divided into three sections: division zone, elongation zone, and maturation zone. In previous studies, low nitrogen (LN) inhibited maize growth and development, especially leaf growth; however, the gene expression in response to LN in different regions in leaf were not clear. Here, using hydroponics and a transcriptome approach, we systematically analyzed the molecular responses of those zones and differentially expressed genes (DEG) in response to LN supply. Developmental stage-specific genes (SGs) were highly stage-specific and involved in distinct biological processes. SGs from division (SGs–DZ) and elongation zones (SGs–EZ) were more related to developmentally dependent processes, whereas SGs of the maturation zone (SGs–MZ) were more related to metabolic processes. The common genes (CGs) were overrepresented in carbon and N metabolism, suggesting that rebalancing carbon and N metabolism in maize leaves under LN condition was independent of developmental stage. Coexpression modules (CMs) were also constructed in our experiment and a total of eight CMs were detected. Most of SGs–DZ and SGs–EZ were classified into a set termed CM turquoise, which was mainly enriched in ribosome and DNA replication, whereas several genes from SGs–MZ and CGs were clustered into CM blue, which mainly focused on photosynthesis and carbon metabolism. Finally, a comprehensive coexpression network was extracted from CM blue, and several maize CONSTANS-LIKE(ZmCOL) genes seemed to participate in regulating photosynthesis in maize leaves under LN condition in a developmental stage-specific manner. With this study, we uncovered the LN-responsive CGs and SGs that are important for promoting plant growth and development under insufficient nitrogen supply.
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Affiliation(s)
- Song Guo
- Institute of Agricultural Resources and Environment, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China; (S.G.); (Y.Q.)
| | - Adnan Arshad
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China;
- PODA Organization, Islamabad 44000, Pakistan
| | - Lan Yang
- College of Resources and Environmental, Hunan Agricultural University, Changsha 410128, China;
| | - Yusheng Qin
- Institute of Agricultural Resources and Environment, Sichuan Academy of Agricultural Sciences, Chengdu 610066, China; (S.G.); (Y.Q.)
| | - Xiaohuan Mu
- Synergetic Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou 450002, China;
| | - Guohua Mi
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China;
- National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions of MOE, China Agricultural University, Beijing 100193, China
- Correspondence: ; Tel.: +86-10-62734454
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22
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Huang W, Ma D, Hao X, Li J, Xia L, Zhang E, Wang P, Wang M, Guo F, Wang Y, Ni D, Zhao H. CsATG101 Delays Growth and Accelerates Senescence Response to Low Nitrogen Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2022; 13:880095. [PMID: 35620698 PMCID: PMC9127664 DOI: 10.3389/fpls.2022.880095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/28/2022] [Indexed: 06/15/2023]
Abstract
For tea plants, nitrogen (N) is a foundational element and large quantities of N are required during periods of roundly vigorous growth. However, the fluctuation of N in the tea garden could not always meet the dynamic demand of the tea plants. Autophagy, an intracellular degradation process for materials recycling in eukaryotes, plays an important role in nutrient remobilization upon stressful conditions and leaf senescence. Studies have proven that numerous autophagy-related genes (ATGs) are involved in N utilization efficiency in Arabidopsis thaliana and other species. Here, we identified an ATG gene, CsATG101, and characterized the potential functions in response to N in A. thaliana. The expression patterns of CsATG101 in four categories of aging gradient leaves among 24 tea cultivars indicated that autophagy mainly occurred in mature leaves at a relatively high level. Further, the in planta heterologous expression of CsATG101 in A. thaliana was employed to investigate the response of CsATG101 to low N stress. The results illustrated a delayed transition from vegetative to reproductive growth under normal N conditions, while premature senescence under N deficient conditions in transgenic plants vs. the wild type. The expression profiles of 12 AtATGs confirmed the autophagy process, especially in mature leaves of transgenic plants. Also, the relatively high expression levels for AtAAP1, AtLHT1, AtGLN1;1, and AtNIA1 in mature leaves illustrated that the mature leaves act as the source leaves in transgenic plants. Altogether, the findings demonstrated that CsATG101 is a candidate gene for improving annual fresh tea leaves yield under both deficient and sufficient N conditions via the autophagy process.
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Affiliation(s)
- Wei Huang
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Danni Ma
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Xulei Hao
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Jia Li
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Li Xia
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - E. Zhang
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Pu Wang
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Mingle Wang
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Fei Guo
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Yu Wang
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Dejiang Ni
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Hua Zhao
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, Huazhong Agricultural University, Wuhan, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
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23
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Liu R, Zhang R, Yang Y, Liu X, Gong Q. Monitoring Autophagy in Rice With GFP-ATG8 Marker Lines. FRONTIERS IN PLANT SCIENCE 2022; 13:866367. [PMID: 35548298 PMCID: PMC9083259 DOI: 10.3389/fpls.2022.866367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 03/28/2022] [Indexed: 06/15/2023]
Abstract
Autophagy is a conserved intracellular trafficking pathway for bulk degradation and recycling of cellular components in eukaryotes. The hallmark of autophagy is the formation of double-membraned vesicles termed autophagosomes, which selectively or non-selectively pack up various macromolecules and organelles and deliver these cargoes into the vacuole/lysosome. Like all other membrane trafficking pathways, the observation of autophagy is largely dependent on marker lines. ATG8/LC3 is the only autophagy-related (ATG) protein that, through a covalent bond to phosphatidylethanolamine (PE), associates tightly with the isolation membrane/pre-autophagosomal structure (PAS), the growing phagophore, the mature autophagosome, and the autophagic bodies. Therefore, fluorescent protein (FP)-tagged ATG8 had been widely used for monitoring autophagosome formation and autophagic flux. In rice (Oryza sativa), FP-OsATG8 driven by Cauliflower mosaic virus (CaMV) 35S promoter had been used for imaging autophagosome and autophagic bodies. Here, we constructed three vectors carrying GFP-OsATG8a, driven by 35S, ubiquitin, and the endogenous ATG8a promoter, individually. Then, we compared them for their suitability in monitoring autophagy, by observing GFP-ATG8a puncta formation in transiently transformed rice protoplasts, and by tracking the autophagic flux with GFP-ATG8 cleavage assay in rice stable transgenic lines. GFP-Trap immunoprecipitation and mass spectrometry were also performed with the three marker lines to show that they can be used reliably for proteomic studies. We found out that the ubiquitin promoter is the best for protoplast imaging. Transgenic rice seedlings of the three marker lines showed comparable performance in autophagic flux measurement using the GFP-ATG8 cleavage assay. Surprisingly, the levels of GFP-ATG8a transcripts and protein contents were similar in all marker lines, indicating post-transcriptional regulation of the transgene expression by a yet unknown mechanism. These marker lines can serve as useful tools for autophagy studies in rice.
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Affiliation(s)
- Rui Liu
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Rongxue Zhang
- Tianjin Key Laboratory of Crop Genetics and Breeding, Tianjin Agricultural University, Tianjin, China
| | - Yi Yang
- College of Life Sciences, Nankai University, Tianjin, China
| | - Xuejun Liu
- Tianjin Key Laboratory of Crop Genetics and Breeding, Tianjin Agricultural University, Tianjin, China
| | - Qingqiu Gong
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
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24
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Bresson J, Doll J, Vasseur F, Stahl M, von Roepenack-Lahaye E, Kilian J, Stadelhofer B, Kremer JM, Kolb D, Wenkel S, Zentgraf U. The genetic interaction of REVOLUTA and WRKY53 links plant development, senescence, and immune responses. PLoS One 2022; 17:e0254741. [PMID: 35333873 PMCID: PMC8956159 DOI: 10.1371/journal.pone.0254741] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Accepted: 03/09/2022] [Indexed: 01/09/2023] Open
Abstract
In annual plants, tight coordination of successive developmental events is of primary importance to optimize performance under fluctuating environmental conditions. The recent finding of the genetic interaction of WRKY53, a key senescence-related gene with REVOLUTA, a master regulator of early leaf patterning, raises the question of how early and late developmental events are connected. Here, we investigated the developmental and metabolic consequences of an alteration of the REVOLUTA and WRKY53 gene expression, from seedling to fruiting. Our results show that REVOLUTA critically controls late developmental phases and reproduction while inversely WRKY53 determines vegetative growth at early developmental stages. We further show that these regulators of distinct developmental phases frequently, but not continuously, interact throughout ontogeny and demonstrated that their genetic interaction is mediated by the salicylic acid (SA). Moreover, we showed that REVOLUTA and WRKY53 are keys regulatory nodes of development and plant immunity thought their role in SA metabolic pathways, which also highlights the role of REV in pathogen defence. Together, our findings demonstrate how late and early developmental events are tightly intertwined by molecular hubs. These hubs interact with each other throughout ontogeny, and participate in the interplay between plant development and immunity.
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Affiliation(s)
- Justine Bresson
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
- * E-mail: (JB); (UZ)
| | - Jasmin Doll
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
| | - François Vasseur
- INRAE, Montpellier, France
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Mark Stahl
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
| | | | - Joachim Kilian
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
| | | | - James M. Kremer
- Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, United States of America
| | - Dagmar Kolb
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
| | - Stephan Wenkel
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Denmark
| | - Ulrike Zentgraf
- ZMBP, General Genetics, University of Tübingen, Tübingen, Germany
- * E-mail: (JB); (UZ)
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25
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Characterization of Stem Nodes Associated with Carbon Partitioning in Maize in Response to Nitrogen Availability. Int J Mol Sci 2022; 23:ijms23084389. [PMID: 35457213 PMCID: PMC9024680 DOI: 10.3390/ijms23084389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 04/12/2022] [Accepted: 04/13/2022] [Indexed: 11/17/2022] Open
Abstract
Stem node has been found to be a hub for controlling mineral nutrient distribution in gramineous plants. However, the characteristics of stem nodes associated with whole-plant carbon partitioning in maize (Zea mays L.) and their responses to nitrogen (N) availability remains elusive. Maize plants were grown in greenhouse under low to high N supply. Plant growth, sugar accumulation, and sugar transporters in nodes and leaves, as well as the anatomical structure of nodes, were investigated at vegetative phase. When compared to N-sufficient plants, low-N availability stunted growth and resulted in 49–64% less sugars in leaves, which was attributed to low photosynthesis or the accelerated carbon export, as evidenced by more 13C detected further below leaf tips. Invariably higher sugar concentrations were found in the stem nodes, rather than in the leaves across N treatments, indicating a crucial role of nodes in facilitating whole-plant carbon partitioning. More and smaller vascular bundles and phloem were observed in stem nodes of N-deficient plants, while higher sugar levels were found in the bottom nodes than in the upper ones. Low-N availability upregulated the gene expressions of sugar transporters, which putatively function in nodes such as ZmSWEETs and ZmSUTs at the bottom stem, but suppressed them in the upper ones, showing a developmental impact on node function. Further, greater activity of sugar transporters in the bottom nodes was associated with less sugars in leaves. Overall, these results highlighted that stem nodes may play an important role in facilitating long-distance sugar transport in maize.
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26
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The Dynamics of Phosphorus Uptake and Remobilization during the Grain Development Period in Durum Wheat Plants. PLANTS 2022; 11:plants11081006. [PMID: 35448734 PMCID: PMC9029974 DOI: 10.3390/plants11081006] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 03/30/2022] [Accepted: 04/01/2022] [Indexed: 11/24/2022]
Abstract
Post-anthesis phosphorus (P) uptake and the remobilization of the previously acquired P are the principal sources of grain P nutrition in wheat. However, how the acquired P reaches the grains and its partitioning at the whole plant level remain poorly understood. Here, the temporal dynamics of the newly acquired P in durum wheat organs and its allocation to grain were examined using pulse-chase 32P-labeling experiments at 5 and 14 days after anthesis. Durum wheat plants were grown hydroponically under high and low P supplies. Each labeling experiment lasted for 24 h. Plants were harvested 24, 48, and 96 h after labeling. Low and high P treatments significantly affected the allocation of the newly acquired P at the whole plant level. Three days (96 h) after the first 32P-labeling, 8% and 4% of the newly acquired P from exogenous solution were allocated to grains, 73% and 55% to the remainder aboveground organs, and 19% and 41% to the roots at low and high P supplies, respectively. Three days after the second labeling, the corresponding values were 48% and 20% in grains, 44% and 53% in the remainder aboveground organs, and 8% and 27% in roots at low and high P supplies, respectively. These results reveal that the dynamics of P allocation to grain was faster in plants grown under low P supply than under high supply. However, the obtained results also indicate that the origin of P accumulated in durum wheat grains was mainly from P remobilization with little contribution from post-anthesis P uptake. The present study emphasizes the role of vegetative organs as temporary storage of P taken up during the grain filling period before its final allocation to grains.
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27
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Doan PPT, Kim JH, Kim J. Rapid Investigation of Functional Roles of Genes in Regulation of Leaf Senescence Using Arabidopsis Protoplasts. FRONTIERS IN PLANT SCIENCE 2022; 13:818239. [PMID: 35371171 PMCID: PMC8969776 DOI: 10.3389/fpls.2022.818239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 02/23/2022] [Indexed: 06/14/2023]
Abstract
Leaf senescence is the final stage of leaf development preceding death, which involves a significant cellular metabolic transition from anabolism to catabolism. Several processes during leaf senescence require coordinated regulation by senescence regulatory genes. In this study, we developed a rapid and systematic cellular approach to dissect the functional roles of genes in senescence regulation through their transient expression in Arabidopsis protoplasts. We established and validated this system by monitoring the differential expression of a luciferase-based reporter that was driven by promoters of SEN4 and SAG12, early and late senescence-responsive genes, depending on effectors of known positive and negative senescence regulators. Overexpression of positive senescence regulators, including ORE1, RPK1, and RAV1, increased the expression of both SEN4- and SAG12-LUC while ORE7, a negative senescence regulator decreased their expression. Consistently with overexpression, knockdown of target genes using amiRNAs resulted in opposite SAG12-LUC expression patterns. The timing and patterns of reporter responses induced by senescence regulators provided molecular evidence for their distinct kinetic involvement in leaf senescence regulation. Remarkably, ORE1 and RPK1 are involved in cell death responses, with more prominent and earlier involvement of ORE1 than RPK1. Consistent with the results in protoplasts, further time series of reactive oxygen species (ROS) and cell death assays using different tobacco transient systems reveal that ORE1 causes acute cell death and RPK1 mediates superoxide-dependent intermediate cell death signaling during leaf senescence. Overall, our results indicated that the luciferase-based reporter system in protoplasts is a reliable experimental system that can be effectively used to examine the regulatory roles of Arabidopsis senescence-associated genes.
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Affiliation(s)
- Phan Phuong Thao Doan
- Interdisciplinary Graduate Program in Advanced Convergence Technology & Science, Jeju National University, Jeju, South Korea
| | - Jin Hee Kim
- Subtropical Horticulture Research Institute, Jeju National University, Jeju, South Korea
| | - Jeongsik Kim
- Interdisciplinary Graduate Program in Advanced Convergence Technology & Science, Jeju National University, Jeju, South Korea
- Subtropical Horticulture Research Institute, Jeju National University, Jeju, South Korea
- Faculty of Science Education, Jeju National University, Jeju, South Korea
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28
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Sartori K, Violle C, Vile D, Vasseur F, de Villemereuil P, Bresson J, Gillespie L, Fletcher LR, Sack L, Kazakou E. Do leaf nitrogen resorption dynamics align with the slow‐fast continuum? A test at the intraspecific level. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kevin Sartori
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
| | - Cyrille Violle
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
| | - Denis Vile
- LEPSE Univ Montpellier INRAE, Institut Agro Montpellier France
| | - François Vasseur
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
- LEPSE Univ Montpellier INRAE, Institut Agro Montpellier France
| | - Pierre de Villemereuil
- Institut de Systématique Évolution, Biodiversité (ISYEB), École Pratique des Hautes Études PSL, MNHN, CNRS, Sorbonne Université, Université des Antilles Paris France
| | - Justine Bresson
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
| | - Lauren Gillespie
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
| | | | | | - Elena Kazakou
- CEFE Univ Montpellier CNRS EPHE, IRD Univ Paul Valéry Montpellier 3 Montpellier France
- Univ Montpellier Institut Agro, Montpellier SupAgro, Montpellier France
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29
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Lear B, Casey M, Stead AD, Rogers HJ. Peduncle Necking in Rosa hybrida Induces Stress-Related Transcription Factors, Upregulates Galactose Metabolism, and Downregulates Phenylpropanoid Biosynthesis Genes. FRONTIERS IN PLANT SCIENCE 2022; 13:874590. [PMID: 35519800 PMCID: PMC9062881 DOI: 10.3389/fpls.2022.874590] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Accepted: 03/11/2022] [Indexed: 05/04/2023]
Abstract
Roses are highly valued as cut flowers worldwide but have limited vase life. Peduncle bending "bent neck" or "necking" is a major cause of reduced vase life, especially in some cultivars. Necking is thought to be caused by either an air embolism or accumulation of microorganisms at or within the stem end, blocking the xylem vessels and preventing water uptake. However, the underlying mechanisms of necking are poorly understood. Here, RNAseq analysis was applied to compare gene expression across three stages of peduncle necking (straight, <90°, and >90°), in the necking-susceptible Rosa hybrida cultivar H30. Most gene expression change was later in bending and there was, overall, more downregulation than upregulation of gene expression during necking. Photosynthetic, starch, and lignin biosynthesis genes were all downregulated, while genes associated with galactose metabolism, producing raffinose and trehalose that are both related to osmoprotection, were upregulated. Genes associated with starch breakdown, autophagy, and senescence were also upregulated, as were most of the NAC and WRKY transcription factors, involved in stress and senescence regulation. Microscopy showed a cellular collapse in the peduncle. These data support a possible mechanism, whereby a reduction in water transport leads to a cellular collapse in the peduncle, accompanied by upregulation of senescence and drought responses.
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Affiliation(s)
- Bianca Lear
- School of Biological Sciences, Royal Holloway University of London, Egham, United Kingdom
| | - Matthew Casey
- School of Biological Sciences, Royal Holloway University of London, Egham, United Kingdom
| | - Anthony D. Stead
- School of Biological Sciences, Royal Holloway University of London, Egham, United Kingdom
| | - Hilary Joan Rogers
- School of Biosciences, Cardiff University, Cardiff, United Kingdom
- *Correspondence: Hilary Joan Rogers
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Rodriguez-Morrison V, Llewellyn D, Zheng Y. Cannabis Inflorescence Yield and Cannabinoid Concentration Are Not Increased With Exposure to Short-Wavelength Ultraviolet-B Radiation. FRONTIERS IN PLANT SCIENCE 2021; 12:725078. [PMID: 34795683 PMCID: PMC8593374 DOI: 10.3389/fpls.2021.725078] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 10/13/2021] [Indexed: 05/25/2023]
Abstract
Before ultraviolet (UV) radiation can be used as a horticultural management tool in commercial Cannabis sativa (cannabis) production, the effects of UV on cannabis should be vetted scientifically. In this study we investigated the effects of UV exposure level on photosynthesis, growth, inflorescence yield, and secondary metabolite composition of two indoor-grown cannabis cultivars: 'Low Tide' (LT) and 'Breaking Wave' (BW). After growing vegetatively for 2 weeks under a canopy-level photosynthetic photon flux density (PPFD) of ≈225 μmol⋅m-2⋅s-1 in an 18-h light/6-h dark photoperiod, plants were grown for 9 weeks in a 12-h light/12-h dark "flowering" photoperiod under a canopy-level PPFD of ≈400 μmol⋅m-2⋅s-1. Supplemental UV radiation was provided daily for 3.5 h at UV photon flux densities ranging from 0.01 to 0.8 μmol⋅m-2⋅s-1 provided by light-emitting diodes (LEDs) with a peak wavelength of 287 nm (i.e., biologically-effective UV doses of 0.16 to 13 kJ⋅m-2⋅d-1). The severity of UV-induced morphology (e.g., whole-plant size and leaf size reductions, leaf malformations, and stigma browning) and physiology (e.g., reduced leaf photosynthetic rate and reduced Fv/Fm) symptoms intensified as UV exposure level increased. While the proportion of the total dry inflorescence yield that was derived from apical tissues decreased in both cultivars with increasing UV exposure level, total dry inflorescence yield only decreased in LT. The total equivalent Δ9-tetrahydrocannabinol (Δ9-THC) and cannabidiol (CBD) concentrations also decreased in LT inflorescences with increasing UV exposure level. While the total terpene content in inflorescences decreased with increasing UV exposure level in both cultivars, the relative concentrations of individual terpenes varied by cultivar. The present study suggests that using UV radiation as a production tool did not lead to any commercially relevant benefits to cannabis yield or inflorescence secondary metabolite composition.
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Affiliation(s)
| | | | - Youbin Zheng
- School of Environmental Sciences, University of Guelph, Guelph, ON, Canada
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31
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Transporters and transcription factors gene families involved in improving nitrogen use efficiency (NUE) and assimilation in rice (Oryza sativa L.). Transgenic Res 2021; 31:23-42. [PMID: 34524604 DOI: 10.1007/s11248-021-00284-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 09/06/2021] [Indexed: 12/18/2022]
Abstract
Nitrogen (N) as a macronutrient is an important determinant of plant growth. The excessive usage of chemical fertilizers is increasing environmental pollution; hence, the improvement of crop's nitrogen use efficiency (NUE) is imperative for sustainable agriculture. N uptake, transportation, assimilation, and remobilization are four important determinants of plant NUE. Oryza sativa L. (rice) is a staple food for approximately half of the human population, around the globe and improvement in rice yield is pivotal for rice breeders. The N transporters, enzymes indulged in N assimilation, and several transcription factors affect the rice NUE and subsequent yield. Although, a couple of improvements have been made regarding rice NUE, the knowledge about regulatory mechanisms operating NUE is scarce. The current review provides a precise knowledge of how rice plants detect soil N and how this detection is translated into the language of responses that regulate the growth. Additionally, the transcription factors that control N-associated genes in rice are discussed in detail. This mechanistic insight will help the researchers to improve rice yield with minimized use of chemical fertilizers.
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Tapia G, González M, Burgos J, Vega MV, Méndez J, Inostroza L. Early transcriptional responses in Solanum peruvianum and Solanum lycopersicum account for different acclimation processes during water scarcity events. Sci Rep 2021; 11:15961. [PMID: 34354211 PMCID: PMC8342453 DOI: 10.1038/s41598-021-95622-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 07/27/2021] [Indexed: 12/13/2022] Open
Abstract
Cultivated tomato Solanum lycopersicum (Slyc) is sensitive to water shortages, while its wild relative Solanum peruvianum L. (Sper), an herbaceous perennial small shrub, can grow under water scarcity and soil salinity environments. Plastic Sper modifies the plant architecture when suffering from drought, which is mediated by the replacement of leaf organs, among other changes. The early events that trigger acclimation and improve these morphological traits are unknown. In this study, a physiological and transcriptomic approach was used to understand the processes that differentiate the response in Slyc and Sper in the context of acclimation to stress and future consequences for plant architecture. In this regard, moderate (MD) and severe drought (SD) were imposed, mediating PEG treatments. The results showed a reduction in water and osmotic potential during stress, which correlated with the upregulation of sugar and proline metabolism-related genes. Additionally, the senescence-related genes FTSH6 protease and asparagine synthase were highly induced in both species. However, GO categories such as "protein ubiquitination" or "endopeptidase inhibitor activity" were differentially enriched in Sper and Slyc, respectively. Genes related to polyamine biosynthesis were induced, while several cyclins and kinetin were downregulated in Sper under drought treatments. Repression of photosynthesis-related genes was correlated with a higher reduction in the electron transport rate in Slyc than in Sper. Additionally, transcription factors from the ERF, WRKY and NAC families were commonly induced in Sper. Although some similar responses were induced in both species under drought stress, many important changes were detected to be differentially induced. This suggests that different pathways dictate the strategies to address the early response to drought and the consequent episodes in the acclimation process in both tomato species.
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Affiliation(s)
- G Tapia
- Unidad de Recursos Genéticos Vegetales, Instituto de Investigaciones Agropecuarias, INIA-Quilamapu, Avenida Vicente Mendez 515, Chillán, Chile.
| | - M González
- Laboratorio de Microbiología Aplicada, Centro de Estudios Avanzados en Zonas Áridas (CEAZA), Raúl Bitrán 1305, La Serena, Chile
| | - J Burgos
- Unidad de Recursos Genéticos Vegetales, Instituto de Investigaciones Agropecuarias, INIA-Quilamapu, Avenida Vicente Mendez 515, Chillán, Chile
| | - M V Vega
- Unidad de Recursos Genéticos Vegetales, Instituto de Investigaciones Agropecuarias, INIA-Quilamapu, Avenida Vicente Mendez 515, Chillán, Chile
| | - J Méndez
- Unidad de Recursos Genéticos Vegetales, Instituto de Investigaciones Agropecuarias, INIA-Quilamapu, Avenida Vicente Mendez 515, Chillán, Chile
| | - L Inostroza
- Unidad de Recursos Genéticos Vegetales, Instituto de Investigaciones Agropecuarias, INIA-Quilamapu, Avenida Vicente Mendez 515, Chillán, Chile
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33
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Huo L, Guo Z, Wang Q, Cheng L, Jia X, Wang P, Gong X, Li C, Ma F. Enhanced Autophagic Activity Improved the Root Growth and Nitrogen Utilization Ability of Apple Plants under Nitrogen Starvation. Int J Mol Sci 2021; 22:ijms22158085. [PMID: 34360850 PMCID: PMC8348665 DOI: 10.3390/ijms22158085] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Revised: 07/15/2021] [Accepted: 07/20/2021] [Indexed: 12/26/2022] Open
Abstract
Autophagy is a conserved degradation pathway for recycling damaged organelles and aberrant proteins, and its important roles in plant adaptation to nutrient starvation have been generally reported. Previous studies found that overexpression of autophagy-related (ATG) gene MdATG10 enhanced the autophagic activity in apple roots and promoted their salt tolerance. The MdATG10 expression was induced by nitrogen depletion condition in both leaves and roots of apple plants. This study aimed to investigate the differences in the growth and physiological status between wild type and MdATG10-overexpressing apple plants in response to nitrogen starvation. A hydroponic system containing different nitrogen levels was used. The study found that the reduction in growth and nitrogen concentrations in different tissues caused by nitrogen starvation was relieved by MdATG10 overexpression. Further studies demonstrated the increased root growth and the higher nitrogen absorption and assimilation ability of transgenic plants. These characteristics contributed to the increased uptake of limited nitrogen nutrients by transgenic plants, which also reduced the starvation damage to the chloroplasts. Therefore, the MdATG10-overexpressing apple plants could maintain higher photosynthetic ability and possess better growth under nitrogen starvation stress.
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Affiliation(s)
- Liuqing Huo
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
- Collaborative Innovation Center for Efficient and Green Production of Agriculture in Mountainous Areas, College of Horticulture Science, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Zijian Guo
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Qi Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Li Cheng
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Xin Jia
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Ping Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Xiaoqing Gong
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
| | - Cuiying Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
- Correspondence: (C.L.); (F.M.)
| | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (L.H.); (Z.G.); (Q.W.); (L.C.); (X.J.); (P.W.); (X.G.)
- Correspondence: (C.L.); (F.M.)
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34
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Turc B, Vollenweider P, Le Thiec D, Gandin A, Schaub M, Cabané M, Jolivet Y. Dynamics of Foliar Responses to O 3 Stress as a Function of Phytotoxic O 3 Dose in Hybrid Poplar. FRONTIERS IN PLANT SCIENCE 2021; 12:679852. [PMID: 34262582 PMCID: PMC8273248 DOI: 10.3389/fpls.2021.679852] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 06/03/2021] [Indexed: 06/13/2023]
Abstract
With background concentrations having reached phytotoxic levels during the last century, tropospheric ozone (O3) has become a key climate change agent, counteracting carbon sequestration by forest ecosystems. One of the main knowledge gaps for implementing the recent O3 flux-based critical levels (CLs) concerns the assessment of effective O3 dose leading to adverse effects in plants. In this study, we investigate the dynamics of physiological, structural, and morphological responses induced by two levels of O3 exposure (80 and 100 ppb) in the foliage of hybrid poplar, as a function of phytotoxic O3 dose (POD0) and foliar developmental stage. After a latency period driven by foliar ontological development, the gas exchanges and chlorophyll content decreased with higher POD0 monotonically. Hypersensitive response-like lesions appeared early during exposure and showed sigmoidal-like dynamics, varying according to leaf age. At current POD1_SPEC CL, notwithstanding the aforementioned reactions and initial visible injury to foliage, the treated poplars had still not shown any growth or biomass reduction. Hence, this study demonstrates the development of a complex syndrome of early reactions below the flux-based CL, with response dynamics closely determined by the foliar ontological stage and environmental conditions. General agreement with patterns observed in the field appears indicative of early O3 impacts on processes relevant, e.g., biodiversity ecosystem services before those of economic significance - i.e., wood production, as targeted by flux-based CL.
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Affiliation(s)
- Benjamin Turc
- University of Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
- Section Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Pierre Vollenweider
- Section Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Didier Le Thiec
- University of Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Anthony Gandin
- University of Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Marcus Schaub
- Section Forest Dynamics, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Birmensdorf, Switzerland
| | - Mireille Cabané
- University of Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
| | - Yves Jolivet
- University of Lorraine, AgroParisTech, INRAE, SILVA, Nancy, France
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35
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Current Understanding of Leaf Senescence in Rice. Int J Mol Sci 2021; 22:ijms22094515. [PMID: 33925978 PMCID: PMC8123611 DOI: 10.3390/ijms22094515] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/21/2021] [Accepted: 04/24/2021] [Indexed: 11/17/2022] Open
Abstract
Leaf senescence, which is the last developmental phase of plant growth, is controlled by multiple genetic and environmental factors. Leaf yellowing is a visual indicator of senescence due to the loss of the green pigment chlorophyll. During senescence, the methodical disassembly of macromolecules occurs, facilitating nutrient recycling and translocation from the sink to the source organs, which is critical for plant fitness and productivity. Leaf senescence is a complex and tightly regulated process, with coordinated actions of multiple pathways, responding to a sophisticated integration of leaf age and various environmental signals. Many studies have been carried out to understand the leaf senescence-associated molecular mechanisms including the chlorophyll breakdown, phytohormonal and transcriptional regulation, interaction with environmental signals, and associated metabolic changes. The metabolic reprogramming and nutrient recycling occurring during leaf senescence highlight the fundamental role of this developmental stage for the nutrient economy at the whole plant level. The strong impact of the senescence-associated nutrient remobilization on cereal productivity and grain quality is of interest in many breeding programs. This review summarizes our current knowledge in rice on (i) the actors of chlorophyll degradation, (ii) the identification of stay-green genotypes, (iii) the identification of transcription factors involved in the regulation of leaf senescence, (iv) the roles of leaf-senescence-associated nitrogen enzymes on plant performance, and (v) stress-induced senescence. Compiling the different advances obtained on rice leaf senescence will provide a framework for future rice breeding strategies to improve grain yield.
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36
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Li W, Zhou X, Yu K, Zhang Z, Liu Y, Hu N, Liu Y, Yao C, Yang X, Wang Z, Zhang Y. Spectroscopic Estimation of N Concentration in Wheat Organs for Assessing N Remobilization Under Different Irrigation Regimes. FRONTIERS IN PLANT SCIENCE 2021; 12:657578. [PMID: 33897747 PMCID: PMC8062884 DOI: 10.3389/fpls.2021.657578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2021] [Accepted: 03/15/2021] [Indexed: 06/12/2023]
Abstract
Nitrogen (N) remobilization is a critical process that provides substantial N to winter wheat grains for improving yield productivity. Here, the remobilization of N from anthesis to maturity in two wheat cultivars under three irrigation regimes was measured and its relationship to organ N concentration was examined. Based on spectral data of organ powder samples, partial least squares regression (PLSR) models were calibrated to estimate N concentration (N mass) and validated against laboratory-based measurements. Although spectral reflectance could accurately estimate N mass, the PLSR-based N mass-spectra predictive model was found to be organ-specific, organs at the top canopy (chaff and top three leaves) received the best predictions (R 2 > 0.88). In addition, N remobilization efficiency (NRE) in the top two leaves and top third internode was highly correlated with its corresponding N concentration change (ΔN mass) with an R 2 of 0.90. ΔN mass of the top first internode (TIN1) explained 78% variation of the whole-plant NRE. This study provides a proof of concept for estimating N concentration and assessing N remobilization using hyperspectral data of individual organs, which offers a non-chemical and low-cost approach to screen germplasms for an optimal NRE in drought-resistance breeding.
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Affiliation(s)
- Wei Li
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Xiaonan Zhou
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Kang Yu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Zhen Zhang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yang Liu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Naiyue Hu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Ying Liu
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Chunsheng Yao
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Xiaoguang Yang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Zhimin Wang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Engineering Technology Research Center for Agriculture in Low Plain Areas, Cangzhou, China
| | - Yinghua Zhang
- College of Agronomy and Biotechnology, China Agricultural University, Beijing, China
- Engineering Technology Research Center for Agriculture in Low Plain Areas, Cangzhou, China
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O’Conner S, Zheng W, Qi M, Kandel Y, Fuller R, Whitham SA, Li L. GmNF-YC4-2 Increases Protein, Exhibits Broad Disease Resistance and Expedites Maturity in Soybean. Int J Mol Sci 2021; 22:3586. [PMID: 33808355 PMCID: PMC8036377 DOI: 10.3390/ijms22073586] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 03/23/2021] [Accepted: 03/26/2021] [Indexed: 11/30/2022] Open
Abstract
The NF-Y gene family is a highly conserved set of transcription factors. The functional transcription factor complex is made up of a trimer between NF-YA, NF-YB, and NF-YC proteins. While mammals typically have one gene for each subunit, plants often have multigene families for each subunit which contributes to a wide variety of combinations and functions. Soybean plants with an overexpression of a particular NF-YC isoform GmNF-YC4-2 (Glyma.04g196200) in soybean cultivar Williams 82, had a lower amount of starch in its leaves, a higher amount of protein in its seeds, and increased broad disease resistance for bacterial, viral, and fungal infections in the field, similar to the effects of overexpression of its isoform GmNF-YC4-1 (Glyma.06g169600). Interestingly, GmNF-YC4-2-OE (overexpression) plants also filled pods and senesced earlier, a novel trait not found in GmNF-YC4-1-OE plants. No yield difference was observed in GmNF-YC4-2-OE compared with the wild-type control. Sequence alignment of GmNF-YC4-2, GmNF-YC4-1 and AtNF-YC1 indicated that faster maturation may be a result of minor sequence differences in the terminal ends of the protein compared to the closely related isoforms.
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Affiliation(s)
- Seth O’Conner
- Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (S.O.); (R.F.)
| | - Wenguang Zheng
- Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA;
| | - Mingsheng Qi
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA; (M.Q.); (Y.K.); (S.A.W.)
| | - Yuba Kandel
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA; (M.Q.); (Y.K.); (S.A.W.)
| | - Robert Fuller
- Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (S.O.); (R.F.)
| | - Steven A. Whitham
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA; (M.Q.); (Y.K.); (S.A.W.)
| | - Ling Li
- Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA; (S.O.); (R.F.)
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The SV, Snyder R, Tegeder M. Targeting Nitrogen Metabolism and Transport Processes to Improve Plant Nitrogen Use Efficiency. FRONTIERS IN PLANT SCIENCE 2021; 11:628366. [PMID: 33732269 PMCID: PMC7957077 DOI: 10.3389/fpls.2020.628366] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Accepted: 12/31/2020] [Indexed: 05/22/2023]
Abstract
In agricultural cropping systems, relatively large amounts of nitrogen (N) are applied for plant growth and development, and to achieve high yields. However, with increasing N application, plant N use efficiency generally decreases, which results in losses of N into the environment and subsequently detrimental consequences for both ecosystems and human health. A strategy for reducing N input and environmental losses while maintaining or increasing plant performance is the development of crops that effectively obtain, distribute, and utilize the available N. Generally, N is acquired from the soil in the inorganic forms of nitrate or ammonium and assimilated in roots or leaves as amino acids. The amino acids may be used within the source organs, but they are also the principal N compounds transported from source to sink in support of metabolism and growth. N uptake, synthesis of amino acids, and their partitioning within sources and toward sinks, as well as N utilization within sinks represent potential bottlenecks in the effective use of N for vegetative and reproductive growth. This review addresses recent discoveries in N metabolism and transport and their relevance for improving N use efficiency under high and low N conditions.
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Affiliation(s)
| | | | - Mechthild Tegeder
- School of Biological Sciences, Washington State University, Pullman, WA, United States
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Jasinski S, Fabrissin I, Masson A, Marmagne A, Lécureuil A, Bill L, Chardon F. ACCELERATED CELL DEATH 6 Acts on Natural Leaf Senescence and Nitrogen Fluxes in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2021; 11:611170. [PMID: 33488657 PMCID: PMC7817547 DOI: 10.3389/fpls.2020.611170] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 11/23/2020] [Indexed: 05/30/2023]
Abstract
As the last step of leaf development, senescence is a molecular process involving cell death mechanism. Leaf senescence is trigged by both internal age-dependent factors and environmental stresses. It must be tightly regulated for the plant to adopt a proper response to environmental variation and to allow the plant to recycle nutrients stored in senescing organs. However, little is known about factors that regulate both nutrients fluxes and plant senescence. Taking advantage of variation for natural leaf senescence between Arabidopsis thaliana accessions, Col-0 and Ct-1, we did a fine mapping of a quantitative trait loci for leaf senescence and identified ACCELERATED CELL DEATH 6 (ACD6) as the causal gene. Using two near-isogeneic lines, differing solely around the ACD6 locus, we showed that ACD6 regulates rosette growth, leaf chlorophyll content, as well as leaf nitrogen and carbon percentages. To unravel the role of ACD6 in N remobilization, the two isogenic lines and acd6 mutant were grown and labeled with 15N at the vegetative stage in order to determine 15N partitioning between plant organs at harvest. Results showed that N remobilization efficiency was significantly lower in all the genotypes with lower ACD6 activity irrespective of plant growth and productivity. Measurement of N uptake at vegetative and reproductive stages revealed that ACD6 did not modify N uptake efficiency but enhanced nitrogen translocation from root to silique. In this study, we have evidenced a new role of ACD6 in regulating both sequential and monocarpic senescences and disrupting the balance between N remobilization and N uptake that is required for a good seed filling.
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Maignan V, Bernay B, Géliot P, Avice JC. Biostimulant Effects of Glutacetine® and Its Derived Formulations Mixed With N Fertilizer on Post-heading N Uptake and Remobilization, Seed Yield, and Grain Quality in Winter Wheat. FRONTIERS IN PLANT SCIENCE 2020; 11:607615. [PMID: 33281859 PMCID: PMC7691253 DOI: 10.3389/fpls.2020.607615] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Accepted: 10/19/2020] [Indexed: 05/04/2023]
Abstract
Biostimulants could play an important role in agriculture particularly for increasing N fertilizer use efficiency that is essential for maintaining both yield and grain quality in bread wheat, which is a major global crop. In the present study, we examined the effects of mixing urea-ammonium-nitrate fertilizer (UAN) or urea with five new biostimulants containing Glutacetine® or its derivative formulations (VNT1, 2, 3, and 4) on the physiological responses, agronomic traits, and grain quality of winter wheat. A first experiment under greenhouse conditions showed that VNT1, VNT3, and VNT4 significantly increased the seed yield and grain numbers per ear. VNT4 also enhanced total plant nitrogen (N) and total grain N, which induced a higher N Harvest Index (NHI). The higher post-heading N uptake (for VNT1 and VNT4) and the acceleration of senescence speed with all formulations enabled better nutrient remobilization efficiency, especially in terms of N mobilization from roots and straw toward the grain with VNT4. The grain ionome was changed by the formulations with the bioavailability of iron improved with the addition of VNT4, and the phytate concentrations in flour were reduced by VNT1 and VNT4. A second experiment in three contrasting field trials confirmed that VNT4 increased seed yield and N use efficiency. Our investigation reveals the important role of these new formulations in achieving significant increases in seed yield and grain quality.
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Affiliation(s)
- Victor Maignan
- Normandie Univ, UNICAEN, INRAE, UMR EVA, SFR Normandie Végétal FED4277, Esplanade de la Paix, Caen, France
- Via Végétale, Le Loroux-Bottereau, France
| | - Benoit Bernay
- Plateforme Proteogen, SFR ICORE 4206, Université de Caen Normandie, Esplanade de la Paix, Caen, France
| | | | - Jean-Christophe Avice
- Normandie Univ, UNICAEN, INRAE, UMR EVA, SFR Normandie Végétal FED4277, Esplanade de la Paix, Caen, France
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41
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Hinckley WE, Brusslan JA. Gene expression changes occurring at bolting time are associated with leaf senescence in Arabidopsis. PLANT DIRECT 2020; 4:e00279. [PMID: 33204935 PMCID: PMC7649007 DOI: 10.1002/pld3.279] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 09/13/2020] [Accepted: 09/30/2020] [Indexed: 05/29/2023]
Abstract
In plants, the vegetative to reproductive phase transition (termed bolting in Arabidopsis) generally precedes age-dependent leaf senescence (LS). Many studies describe a temporal link between bolting time and LS, as plants that bolt early, senesce early, and plants that bolt late, senesce late. The molecular mechanisms underlying this relationship are unknown and are potentially agriculturally important, as they may allow for the development of crops that can overcome early LS caused by stress-related early-phase transition. We hypothesized that leaf gene expression changes occurring in synchrony with bolting were regulating LS. ARABIDOPSIS TRITHORAX (ATX) enzymes are general methyltransferases that regulate the adult vegetative to reproductive phase transition. We generated an atx1, atx3, and atx4 (atx1,3,4) triple T-DNA insertion mutant that displays both early bolting and early LS. This mutant was used in an RNA-seq time-series experiment to identify gene expression changes in rosette leaves that are likely associated with bolting. By comparing the early bolting mutant to vegetative WT plants of the same age, we were able to generate a list of differentially expressed genes (DEGs) that change expression with bolting as the plants age. We trimmed the list by intersection with publicly available WT datasets, which removed genes from our DEG list that were atx1,3,4 specific. The resulting 398 bolting-associated genes (BAGs) are differentially expressed in a mature rosette leaf at bolting. The BAG list contains many well-characterized LS regulators (ORE1, WRKY45, NAP, WRKY28), and GO analysis revealed enrichment for LS and LS-related processes. These bolting-associated LS regulators may contribute to the temporal coupling of bolting time to LS.
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Affiliation(s)
| | - Judy A. Brusslan
- Department of Biological SciencesCalifornia State UniversityLong Beach, Long BeachCAUSA
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42
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Mitros T, Session AM, James BT, Wu GA, Belaffif MB, Clark LV, Shu S, Dong H, Barling A, Holmes JR, Mattick JE, Bredeson JV, Liu S, Farrar K, Głowacka K, Jeżowski S, Barry K, Chae WB, Juvik JA, Gifford J, Oladeinde A, Yamada T, Grimwood J, Putnam NH, De Vega J, Barth S, Klaas M, Hodkinson T, Li L, Jin X, Peng J, Yu CY, Heo K, Yoo JH, Ghimire BK, Donnison IS, Schmutz J, Hudson ME, Sacks EJ, Moose SP, Swaminathan K, Rokhsar DS. Genome biology of the paleotetraploid perennial biomass crop Miscanthus. Nat Commun 2020; 11:5442. [PMID: 33116128 PMCID: PMC7595124 DOI: 10.1038/s41467-020-18923-6] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Accepted: 08/19/2020] [Indexed: 02/05/2023] Open
Abstract
Miscanthus is a perennial wild grass that is of global importance for paper production, roofing, horticultural plantings, and an emerging highly productive temperate biomass crop. We report a chromosome-scale assembly of the paleotetraploid M. sinensis genome, providing a resource for Miscanthus that links its chromosomes to the related diploid Sorghum and complex polyploid sugarcanes. The asymmetric distribution of transposons across the two homoeologous subgenomes proves Miscanthus paleo-allotetraploidy and identifies several balanced reciprocal homoeologous exchanges. Analysis of M. sinensis and M. sacchariflorus populations demonstrates extensive interspecific admixture and hybridization, and documents the origin of the highly productive triploid bioenergy crop M. × giganteus. Transcriptional profiling of leaves, stem, and rhizomes over growing seasons provides insight into rhizome development and nutrient recycling, processes critical for sustainable biomass accumulation in a perennial temperate grass. The Miscanthus genome expands the power of comparative genomics to understand traits of importance to Andropogoneae grasses. The perennial grass Miscanthus is a promising biomass crop. Here, via genomics and transcriptomics, the authors reveal its allotetraploid origin, characterize gene expression associated with rhizome development and nutrient recycling, and describe the hybrid origin of the triploid M. x giganteus.
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Affiliation(s)
- Therese Mitros
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.,DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA
| | - Adam M Session
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA.,U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA
| | - Brandon T James
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.,HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA
| | - Guohong Albert Wu
- U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA
| | - Mohammad B Belaffif
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.,HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA
| | - Lindsay V Clark
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Shengqiang Shu
- U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA
| | - Hongxu Dong
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA
| | - Adam Barling
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA
| | - Jessica R Holmes
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,High Performance Biological Computing, Roy J. Carver Biotechnology Center, University of Illinois, 206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Jessica E Mattick
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Department of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, 60153, USA
| | - Jessen V Bredeson
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA
| | - Siyao Liu
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Department of Genetics, Curriculum of Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, NC, 27514, USA
| | - Kerrie Farrar
- Institute of Biological, Environmental AND Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK
| | - Katarzyna Głowacka
- Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland.,Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA
| | - Stanisław Jeżowski
- Institute of Plant Genetics, Polish Academy of Sciences, 60-479, Poznań, Poland
| | - Kerrie Barry
- U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA
| | - Won Byoung Chae
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Department of Environmental Horticulture, Dankook University, Cheonan, 31116, Republic of Korea
| | - John A Juvik
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA
| | - Justin Gifford
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA
| | - Adebosola Oladeinde
- Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA
| | - Toshihiko Yamada
- Field Science Center for Northern Biosphere, 10-chōme-3 Kita 11 Jōnishi, Kita-ku, Sapporo, Hokkaido, 060-0811, Japan
| | - Jane Grimwood
- U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.,HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA
| | - Nicholas H Putnam
- Dovetail Genomics, 100 Enterprise Way, Scotts Valley, CA, 95066, USA
| | - Jose De Vega
- Earlham Institute, Norwich Research Park Innovation Centre, Norwich, NR4 7UZ, UK
| | - Susanne Barth
- Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland
| | - Manfred Klaas
- Teagasc, Crops, Environment and Land Use Programme, Oak Park Research Centre, Carlow, R93XE12, Ireland
| | - Trevor Hodkinson
- Botany, School of Natural Sciences, Trinity College Dublin, The University of Dublin, D2, Dublin, Ireland
| | - Laigeng Li
- Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, 300 Fenglin Rd, Shanghai, 200032, China
| | - Xiaoli Jin
- Department of Agronomy, Zhejiang University, Hangzhou, 310058, China
| | - Junhua Peng
- HuaZhi Rice Biotech Company, Changsha, 410125, Hunan, China
| | - Chang Yeon Yu
- Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea
| | - Kweon Heo
- Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea
| | - Ji Hye Yoo
- Department of Applied Plant Sciences, Kangwon National University, Chuncheon, Gangwon, 200-701, Republic of Korea
| | - Bimal Kumar Ghimire
- Department of Applied Bioscience, Konkuk University, Seoul, 05029, Republic of Korea
| | - Iain S Donnison
- Institute of Biological, Environmental AND Rural Sciences (IBERS), Aberystwyth University, Gogerddan, Aberystwyth, Ceredigion, SY23 3EE, UK
| | - Jeremy Schmutz
- U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA.,HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA
| | - Matthew E Hudson
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.,Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Erik J Sacks
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.,Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Stephen P Moose
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA.,Department of Crop Sciences, University of Illinois, 1102S Goodwin Ave, Urbana, IL, 61801, USA.,Carl R. Woese Institute for Genomic Biology, University of Illinois, 1206 West Gregory Drive, Urbana, IL, 61801, USA
| | - Kankshita Swaminathan
- DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA. .,HudsonAlpha Biotechnology Institute, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.
| | - Daniel S Rokhsar
- Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720, USA. .,DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI), University of Illinois, Urbana-Champaign, IL, 61801, USA. .,U.S. Department of Energy Joint Genome Institute, Berkeley, CA, 94720, USA. .,Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 9040495, Japan. .,Chan-Zuckerberg BioHub, 499 Illinois St, San Francisco, CA, 94158, USA.
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43
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Su T, Yang M, Wang P, Zhao Y, Ma C. Interplay between the Ubiquitin Proteasome System and Ubiquitin-Mediated Autophagy in Plants. Cells 2020; 9:cells9102219. [PMID: 33019500 PMCID: PMC7600366 DOI: 10.3390/cells9102219] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 09/22/2020] [Accepted: 09/25/2020] [Indexed: 12/12/2022] Open
Abstract
All eukaryotes rely on the ubiquitin-proteasome system (UPS) and autophagy to control the abundance of key regulatory proteins and maintain a healthy intracellular environment. In the UPS, damaged or superfluous proteins are ubiquitinated and degraded in the proteasome, mediated by three types of ubiquitin enzymes: E1s (ubiquitin activating enzymes), E2s (ubiquitin conjugating enzymes), and E3s (ubiquitin protein ligases). Conversely, in autophagy, a vesicular autophagosome is formed that transfers damaged proteins and organelles to the vacuole, mediated by a series of ATGs (autophagy related genes). Despite the use of two completely different componential systems, the UPS and autophagy are closely interconnected and mutually regulated. During autophagy, ATG8 proteins, which are autophagosome markers, decorate the autophagosome membrane similarly to ubiquitination of damaged proteins. Ubiquitin is also involved in many selective autophagy processes and is thus a common factor of the UPS and autophagy. Additionally, the components of the UPS, such as the 26S proteasome, can be degraded via autophagy, and conversely, ATGs can be degraded by the UPS, indicating cross regulation between the two pathways. The UPS and autophagy cooperate and jointly regulate homeostasis of cellular components during plant development and stress response.
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Affiliation(s)
| | | | | | | | - Changle Ma
- Correspondence: ; Tel.: +86-0531-86180792
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44
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Röhlen-Schmittgen S, Ellenberger J, Groher T, Hunsche M. Boosting leaf contents of rutin and solanesol in bio-waste of Solanum lycopersicum. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:888-897. [PMID: 32905983 DOI: 10.1016/j.plaphy.2020.08.035] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 08/17/2020] [Accepted: 08/17/2020] [Indexed: 05/10/2023]
Abstract
In tomato production, the accruing green biomass shows promising potential as source of health-promoting compounds, such as rutin and solanesol, that are of high interest due to their medicinal properties. Naturally, they accumulate in plants growing in suboptimal growing conditions, e.g. influenced by biotic and abiotic stressors. With the aim to evaluate the potential use of tomato residues as source, we analyzed both leaf metabolites during a complete cultivation cycle, while applying single and combined stresses practically realized in greenhouse production. In the late season, contents of both metabolites were significantly enhanced by nutrient deficit in combination with 2 °C colder nights for 4 weeks and prolonged for in total 9 weeks. Particularly, higher solanesol contents were achieved by salt stress and elevated temperature after one week, even stronger when combined with drought. At harvest, stressed plants consist of less green biomass reducing the overall economic potential. However, practicable abiotic stresses should be considered as potential tool to induce the accumulation of beneficial compounds. Extracting profitable metabolites from the green biomass of the model crop tomato supports the overall goal to promote sustainable approaches in horticultural production.
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Affiliation(s)
| | - Jan Ellenberger
- INRES Horticultural Science, University of Bonn, Auf dem Huegel 6, 53121, Bonn, Germany
| | - Tanja Groher
- INRES Horticultural Science, University of Bonn, Auf dem Huegel 6, 53121, Bonn, Germany; Agroscope, Taenikon, 8356, Ettenhausen, Switzerland
| | - Mauricio Hunsche
- INRES Horticultural Science, University of Bonn, Auf dem Huegel 6, 53121, Bonn, Germany; COMPO EXPERT International GmbH, 48155, Muenster, Germany
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45
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Amino Acid Transporters in Plant Cells: A Brief Review. PLANTS 2020; 9:plants9080967. [PMID: 32751704 PMCID: PMC7464682 DOI: 10.3390/plants9080967] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Revised: 07/20/2020] [Accepted: 07/28/2020] [Indexed: 02/07/2023]
Abstract
Amino acids are not only a nitrogen source that can be directly absorbed by plants, but also the major transport form of organic nitrogen in plants. A large number of amino acid transporters have been identified in different plant species. Despite belonging to different families, these amino acid transporters usually exhibit some general features, such as broad expression pattern and substrate selectivity. This review mainly focuses on transporters involved in amino acid uptake, phloem loading and unloading, xylem-phloem transfer, import into seed and intracellular transport in plants. We summarize the other physiological roles mediated by amino acid transporters, including development regulation, abiotic stress tolerance and defense response. Finally, we discuss the potential applications of amino acid transporters for crop genetic improvement.
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46
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Genome wide analysis of NLP transcription factors reveals their role in nitrogen stress tolerance of rice. Sci Rep 2020; 10:9368. [PMID: 32523127 PMCID: PMC7287097 DOI: 10.1038/s41598-020-66338-6] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2019] [Accepted: 05/14/2020] [Indexed: 02/08/2023] Open
Abstract
The NIN-LIKE PROTEIN (NLP) family of transcription factors were identified as nitrate-responsive cis-element (NRE)-binding proteins, which function as transcriptional activators in the nitrate-regulated expression of downstream genes. This study was aimed at genome-wide analysis of NLP gene family in rice and the expression profiling of NLPs in response to nitrogen (N) supply and deficiency in rice genotypes with contrasting N use efficiency (NUE). Based on in silico analysis, 6 NLP genes (including alternative splice forms 11 NLPs) were identified from rice. Expression of NLPs was promoted by nitrate supply as well as N deficiency (NLP1, NLP3, NLP4 and NLP5). Four rice genotypes APO (high NUE under sufficient N), IR83929-B-B-291-3-1-1 (IR-3-1-1), Nerica-L-42 (NL-42) (High NUE at low N), and Pusa Basmati 1 (PB1, low NUE) to correlate traits governing NUE and expression of NLPs. Analysis of rate of nitrate uptake and expression of N assimilatory and uptake genes established that IR-3-1-1 has high uptake and assimilation efficiency, translating into high NUE, whereas PB1 is efficient in uptake only when N availability is high. Along with the transcriptional upregulation of NLPs, genotype IR-3-1-1, displayed highest expression of OsNRT1.1B gene, the closest rice homologue of nitrate transceptor AtNRT1.1 and plays major role in nitrate uptake, translocation and signaling in rice. The results showed that high NUE rice genotypes has both high Nitrogen uptake efficiency (NUpE) and Nitrogen utilization efficiency (NUtE), resulting from the effective and coordinated signal transduction network involving the rice homologue of nitrate transceptor OsNRT1.1B, the probable primary nitrate response (PNR) regulator OsNLP1 and the master response regulator OsNLP3, a homologue of AtNLP6/7.
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47
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Bedu M, Marmagne A, Masclaux-Daubresse C, Chardon F. Transcriptional Plasticity of Autophagy-Related Genes Correlates with the Genetic Response to Nitrate Starvation in Arabidopsis Thaliana. Cells 2020; 9:E1021. [PMID: 32326055 PMCID: PMC7226452 DOI: 10.3390/cells9041021] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 04/16/2020] [Accepted: 04/16/2020] [Indexed: 01/22/2023] Open
Abstract
In eukaryotes, autophagy, a catabolic mechanism for macromolecule and protein recycling, allows the maintenance of amino acid pools and nutrient remobilization. For a better understanding of the relationship between autophagy and nitrogen metabolism, we studied the transcriptional plasticity of autophagy genes (ATG) in nine Arabidopsis accessions grown under normal and nitrate starvation conditions. The status of the N metabolism in accessions was monitored by measuring the relative expression of 11 genes related to N metabolism in rosette leaves. The transcriptional variation of the genes coding for enzymes involved in ammonium assimilation characterize the genetic diversity of the response to nitrate starvation. Starvation enhanced the expression of most of the autophagy genes tested, suggesting a control of autophagy at transcriptomic level by nitrogen. The diversity of the gene responses among natural accessions revealed the genetic variation existing for autophagy independently of the nutritive condition, and the degree of response to nitrate starvation. We showed here that the genetic diversity of the expression of N metabolism genes correlates with that of the ATG genes in the two nutritive conditions, suggesting that the basal autophagy activity is part of the integral response of the N metabolism to nitrate availability.
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Affiliation(s)
- Magali Bedu
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France; (M.B.); (A.M.); (C.M.-D.)
- Bureau International des Poids et Mesures (BIPM), Pavillon de Breteuil, F-92312 Sèvres, France
| | - Anne Marmagne
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France; (M.B.); (A.M.); (C.M.-D.)
| | - Céline Masclaux-Daubresse
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France; (M.B.); (A.M.); (C.M.-D.)
| | - Fabien Chardon
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000 Versailles, France; (M.B.); (A.M.); (C.M.-D.)
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48
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Sink/Source Balance of Leaves Influences Amino Acid Pools and Their Associated Metabolic Fluxes in Winter Oilseed Rape ( Brassica napus L.). Metabolites 2020; 10:metabo10040150. [PMID: 32295054 PMCID: PMC7240945 DOI: 10.3390/metabo10040150] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 03/26/2020] [Accepted: 04/09/2020] [Indexed: 11/18/2022] Open
Abstract
Nitrogen remobilization processes from source to sink tissues in plants are determinant for seed yield and their implementation results in a complete reorganization of the primary metabolism during sink/source transition. Here, we decided to characterize the impact of the sink/source balance on amino acid metabolism in the leaves of winter oilseed rape grown at the vegetative stage. We combined a quantitative metabolomics approach with an instationary 15N-labeling experiment by using [15N]L-glycine as a metabolic probe on leaf ranks with a gradual increase in their source status. We showed that the acquisition of the source status by leaves was specifically accompanied by a decrease in asparagine, glutamine, proline and S-methyl-l-cysteine sulphoxide contents and an increase in valine and threonine contents. Dynamic analysis of 15N enrichment and concentration of amino acids revealed gradual changes in the dynamics of amino acid metabolism with respect to the sink/source status of leaf ranks. Notably, nitrogen assimilation into valine, threonine and proline were all decreased in source leaves compared to sink leaves. Overall, our results suggested a reduction in de novo amino acid biosynthesis during sink/source transition at the vegetative stage.
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49
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Dier M, Hüther L, Schulze WX, Erbs M, Köhler P, Weigel HJ, Manderscheid R, Zörb C. Elevated Atmospheric CO 2 Concentration Has Limited Effect on Wheat Grain Quality Regardless of Nitrogen Supply. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2020; 68:3711-3721. [PMID: 32105067 DOI: 10.1021/acs.jafc.9b07817] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Elevated atmospheric CO2 concentrations (e[CO2]) can decrease the grain quality of wheat. However, little information exists concerning interactions between e[CO2] and nitrogen fertilization on important grain quality traits. To investigate this, a 2-year free air CO2 enrichment (FACE) experiment was conducted with two CO2 (393 and 600 ppm) and three (deficiency, adequate, and excess) nitrogen levels. Concentrations of flour proteins (albumins/globulins, gliadins, and glutenins) and key minerals (iron, zinc, and sulfur) and baking quality (loaf volume) were markedly increased by increasing nitrogen levels and varied between years. e[CO2] resulted in slightly decreased albumin/globulin and total gluten concentration under all nitrogen conditions, whereas loaf volume and mineral concentrations remained unaffected. Two-dimensional gel electrophoresis revealed strong effects of nitrogen supply and year on the grain proteome. Under adequate nitrogen, the grain proteome was affected by e[CO2] with 19 downregulated and 17 upregulated protein spots. The downregulated proteins comprised globulins but no gluten proteins. e[CO2] resulted in decreased crude protein concentration at maximum loaf volume. The present study contrasts with other FACE studies showing markedly stronger negative impacts of e[CO2] on chemical grain quality, and the reasons for that might be differences between genotypes, soil conditions, or the extent of growth stimulation by e[CO2].
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Affiliation(s)
- Markus Dier
- Institute of Crop Science, Quality of Plant Products, University of Hohenheim, Emil-Wolff-Str. 25, D-70599 Stuttgart, Germany
- Thünen Institute of Biodiversity, Bundesallee 65, D-38116 Braunschweig, Germany
| | - Liane Hüther
- Institute of Animal Nutrition, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Bundesallee 37, D-38116 Braunschweig, Germany
| | - Waltraud X Schulze
- Department of Plant Systems Biology, University of Hohenheim, Garbenstr. 30, D-70593 Stuttgart, Germany
| | - Martin Erbs
- German Agricultural Research Alliance-Deutsche Agrarforschungsallianz (DAFA), Bundesallee 50, D-38116 Braunschweig, Germany
- Thünen Institute of Biodiversity, Bundesallee 65, D-38116 Braunschweig, Germany
| | - Peter Köhler
- Biotask AG, Schelztorstr. 54-56, D-73728 Esslingen, Germany
| | - Hans-Joachim Weigel
- Thünen Institute of Biodiversity, Bundesallee 65, D-38116 Braunschweig, Germany
| | - Remy Manderscheid
- Thünen Institute of Biodiversity, Bundesallee 65, D-38116 Braunschweig, Germany
| | - Christian Zörb
- Institute of Crop Science, Quality of Plant Products, University of Hohenheim, Emil-Wolff-Str. 25, D-70599 Stuttgart, Germany
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50
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Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation. Int J Mol Sci 2020; 21:ijms21062171. [PMID: 32245240 PMCID: PMC7139695 DOI: 10.3390/ijms21062171] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2020] [Revised: 03/19/2020] [Accepted: 03/19/2020] [Indexed: 01/10/2023] Open
Abstract
Nitrogen (N) is essential for plant growth and crop productivity. Organic N is a major form of remobilized N in plants’ response to N limitation. It is necessary to understand the regulatory role of N limitation adaption (NLA) in organic N remobilization for this adaptive response. Transcriptional and proteomic analyses were integrated to investigate differential responses of wild-type (WT) and nla mutant plants to N limitation and to identify the core organic N transporters targeted by NLA. Under N limitation, the nla mutant presented an early senescence with faster chlorophyll loss and less anthocyanin accumulation than the WT, and more N was transported out of the aging leaves in the form of amino acids. High-throughput transcriptomic and proteomic analyses revealed that N limitation repressed genes involved in photosynthesis and protein synthesis, and promoted proteolysis; these changes were higher in the nla mutant than in the WT. Both transcriptional and proteomic profiling demonstrated that LHT1, responsible for amino acid remobilization, were only significantly upregulated in the nla mutant under N limitation. These findings indicate that NLA might target LHT1 and regulate organic N remobilization, thereby improving our understanding of the regulatory role of NLA on N remobilization under N limitation.
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