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For: Gu X, Zou Y, Su Z, Huang W, Zhou Z, Arendsee Z, Zeng Y. An update of DIVERGE software for functional divergence analysis of protein family. Mol Biol Evol 2013;30:1713-9. [PMID: 23589455 DOI: 10.1093/molbev/mst069] [Citation(s) in RCA: 137] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
Number Cited by Other Article(s)
1
Hernández Berthet AS, Aptekmann AA, Tejero J, Sánchez IE, Noguera ME, Roman EA. Associating protein sequence positions with the modulation of quantitative phenotypes. Arch Biochem Biophys 2024;755:109979. [PMID: 38583654 DOI: 10.1016/j.abb.2024.109979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 03/11/2024] [Accepted: 03/27/2024] [Indexed: 04/09/2024]
2
Qu CL, Jin H, Zhang B, Chen WJ, Zhang Y, Xu YY, Wang R, Lao YM. Haematococcus lacustris Carotenogensis: A Historical Event of Primary to Secondary Adaptations to Earth's Oxygenation. Life (Basel) 2024;14:576. [PMID: 38792597 PMCID: PMC11121925 DOI: 10.3390/life14050576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/21/2024] [Accepted: 02/28/2024] [Indexed: 05/26/2024]  Open
3
Hussain M, Javed MM, Sami A, Shafiq M, Ali Q, Mazhar HSUD, Tabassum J, Javed MA, Haider MZ, Hussain M, Sabir IA, Ali D. Genome-wide analysis of plant specific YABBY transcription factor gene family in carrot (Dacus carota) and its comparison with Arabidopsis. BMC Genom Data 2024;25:26. [PMID: 38443818 PMCID: PMC10916311 DOI: 10.1186/s12863-024-01210-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Accepted: 02/19/2024] [Indexed: 03/07/2024]  Open
4
Balakrishnan S, Bhasker R, Ramasamy Y, Dev SA. Genome-wide analysis of cellulose synthase gene superfamily in Tectona grandis L.f. 3 Biotech 2024;14:86. [PMID: 38385141 PMCID: PMC10876501 DOI: 10.1007/s13205-024-03927-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 01/08/2024] [Indexed: 02/23/2024]  Open
5
Bowman J, Lynch VJ. Rapid evolution of genes with anti-cancer functions during the origins of large bodies and cancer resistance in elephants. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.27.582135. [PMID: 38463968 PMCID: PMC10925141 DOI: 10.1101/2024.02.27.582135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/12/2024]
6
Tabassum N, Shafiq M, Fatima S, Tahir S, Tabassum B, Ali Q, Javed MA. Genome-wide in-silico analysis of ethylene biosynthesis gene family in Musa acuminata L. and their response under nutrient stress. Sci Rep 2024;14:558. [PMID: 38177217 PMCID: PMC10767074 DOI: 10.1038/s41598-023-51075-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 12/30/2023] [Indexed: 01/06/2024]  Open
7
Perez LJ, Cloherty GA, Berg MG. Parallel evolution of picobirnaviruses from distinct ancestral origins. Microbiol Spectr 2023;11:e0269323. [PMID: 37888988 PMCID: PMC10714727 DOI: 10.1128/spectrum.02693-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 09/19/2023] [Indexed: 10/28/2023]  Open
8
Yang JF, Shi LR, Wang KC, Huang LL, Deng YS, Chen MX, Wan FH, Zhou ZS. HDAC1: An Essential and Conserved Member of the Diverse Zn2+-Dependent HDAC Family Driven by Divergent Selection Pressure. Int J Mol Sci 2023;24:17072. [PMID: 38069395 PMCID: PMC10707265 DOI: 10.3390/ijms242317072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 11/26/2023] [Accepted: 11/30/2023] [Indexed: 12/18/2023]  Open
9
Cellier MFM. Slc11 Synapomorphy: A Conserved 3D Framework Articulating Carrier Conformation Switch. Int J Mol Sci 2023;24:15076. [PMID: 37894758 PMCID: PMC10606218 DOI: 10.3390/ijms242015076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Revised: 10/05/2023] [Accepted: 10/07/2023] [Indexed: 10/29/2023]  Open
10
Quijano-Barraza JM, Zúñiga G, Cano-Ramírez C, López MF, Ramírez-Salinas GL, Becerril M. Evolution and functional role prediction of the CYP6DE and CYP6DJ subfamilies in Dendroctonus (Curculionidae: Scolytinae) bark beetles. Front Mol Biosci 2023;10:1274838. [PMID: 37877122 PMCID: PMC10593416 DOI: 10.3389/fmolb.2023.1274838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 09/26/2023] [Indexed: 10/26/2023]  Open
11
Meyer L, Crocoll C, Halkier BA, Mirza OA, Xu D. Identification of key amino acid residues in AtUMAMIT29 for transport of glucosinolates. FRONTIERS IN PLANT SCIENCE 2023;14:1219783. [PMID: 37528977 PMCID: PMC10388549 DOI: 10.3389/fpls.2023.1219783] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 06/08/2023] [Indexed: 08/03/2023]
12
Huo C, Tian H, Rao H, Zeng B, Li D, Li Z, Li Y. Genetic diversity of Toll-like receptor 9 in swamp eels (Monopterus albus). JOURNAL OF FISH BIOLOGY 2023;102:1149-1156. [PMID: 36879356 DOI: 10.1111/jfb.15366] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 02/28/2023] [Indexed: 05/13/2023]
13
Dong J, Sun C, Tian Y, Zhang H, Liu Z, Gao F, Ye X. Genomic organization and gene evolution of two warm temperature acclimation proteins (Wap65s) of Micropterus salmoides and their responses to temperature and bacterial/viral infections. Int J Biol Macromol 2023;227:340-353. [PMID: 36529221 DOI: 10.1016/j.ijbiomac.2022.12.065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 11/23/2022] [Accepted: 12/06/2022] [Indexed: 12/23/2022]
14
Liu H, Liu X, Chang X, Chen F, Lin Z, Zhang L. Large-scale analyses of angiosperm Flowering Locus T genes reveal duplication and functional divergence in monocots. FRONTIERS IN PLANT SCIENCE 2023;13:1039500. [PMID: 36684773 PMCID: PMC9847362 DOI: 10.3389/fpls.2022.1039500] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
15
Sarwar R, Li L, Yu J, Zhang Y, Geng R, Meng Q, Zhu K, Tan XL. Functional Characterization of the Cystine-Rich-Receptor-like Kinases (CRKs) and Their Expression Response to Sclerotinia sclerotiorum and Abiotic Stresses in Brassica napus. Int J Mol Sci 2022;24:ijms24010511. [PMID: 36613954 PMCID: PMC9820174 DOI: 10.3390/ijms24010511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/24/2022] [Accepted: 12/24/2022] [Indexed: 12/29/2022]  Open
16
Lang D, Wang X, Liu C, Geng W, Irwin DM, Chen S, Li C, Yu L, Xiao H. Birth-and-death evolution of ribonuclease 9 genes in Cetartiodactyla. SCIENCE CHINA LIFE SCIENCES 2022;66:1170-1182. [PMID: 36443512 DOI: 10.1007/s11427-022-2195-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 08/30/2022] [Indexed: 11/30/2022]
17
Cellier MFM. Nramp: Deprive and conquer? Front Cell Dev Biol 2022;10:988866. [PMID: 36313567 PMCID: PMC9606685 DOI: 10.3389/fcell.2022.988866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 09/20/2022] [Indexed: 11/13/2022]  Open
18
Gao X, Zou R, Sun H, Liu J, Duan W, Hu Y, Yan Y. Genome-wide identification of wheat ABC1K gene family and functional dissection of TaABC1K3 and TaABC1K6 involved in drought tolerance. FRONTIERS IN PLANT SCIENCE 2022;13:991171. [PMID: 36105699 PMCID: PMC9465391 DOI: 10.3389/fpls.2022.991171] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
19
Chen H, Bhowmick B, Tang Y, Lozano-Fernandez J, Han Q. Biochemical Evolution of a Potent Target of Mosquito Larvicide, 3-Hydroxykynurenine Transaminase. Molecules 2022;27:molecules27154929. [PMID: 35956879 PMCID: PMC9369995 DOI: 10.3390/molecules27154929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 07/26/2022] [Accepted: 07/29/2022] [Indexed: 11/16/2022]  Open
20
Wu X, Yuan F, Wang X, Zhu S, Pei ZM. Evolution of osmosensing OSCA1 Ca2+ channel family coincident with plant transition from water to land. THE PLANT GENOME 2022;15:e20198. [PMID: 35502648 DOI: 10.1002/tpg2.20198] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
21
Xu D, Yang C, Fan H, Qiu W, Huang B, Zhuo R, He Z, Li H, Han X. Genome-Wide Characterization, Evolutionary Analysis of ARF Gene Family, and the Role of SaARF4 in Cd Accumulation of Sedum alfredii Hance. PLANTS (BASEL, SWITZERLAND) 2022;11:1273. [PMID: 35567274 PMCID: PMC9103128 DOI: 10.3390/plants11091273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 04/28/2022] [Accepted: 05/05/2022] [Indexed: 06/15/2023]
22
Pascarelli S, Laurino P. Inter-paralog amino acid inversion events in large phylogenies of duplicated proteins. PLoS Comput Biol 2022;18:e1010016. [PMID: 35377869 PMCID: PMC9009777 DOI: 10.1371/journal.pcbi.1010016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 04/14/2022] [Accepted: 03/12/2022] [Indexed: 11/25/2022]  Open
23
Hu P, Song P, Xu J, Wei Q, Tao Y, Ren Y, Yu Y, Li D, Hu H, Li C. Genome-Wide Analysis of Serine Hydroxymethyltransferase Genes in Triticeae Species Reveals That TaSHMT3A-1 Regulates Fusarium Head Blight Resistance in Wheat. FRONTIERS IN PLANT SCIENCE 2022;13:847087. [PMID: 35222497 PMCID: PMC8866830 DOI: 10.3389/fpls.2022.847087] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2022] [Accepted: 01/18/2022] [Indexed: 06/02/2023]
24
Varda N, Novinec M. Evolutionary Analysis of Dipeptidyl Peptidase I. Int J Mol Sci 2022;23:ijms23031852. [PMID: 35163774 PMCID: PMC8836896 DOI: 10.3390/ijms23031852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Revised: 02/01/2022] [Accepted: 02/04/2022] [Indexed: 12/10/2022]  Open
25
Sarwar R, Geng R, Li L, Shan Y, Zhu KM, Wang J, Tan XL. Genome-Wide Prediction, Functional Divergence, and Characterization of Stress-Responsive BZR Transcription Factors in B. napus. FRONTIERS IN PLANT SCIENCE 2022;12:790655. [PMID: 35058951 PMCID: PMC8764130 DOI: 10.3389/fpls.2021.790655] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 12/01/2021] [Indexed: 05/12/2023]
26
Li Y. Molecular epidemiology of yellow fever virus in Africa: A perspective of the phylogeographic split between East/Central African and West African lineages. Acta Trop 2022;225:106199. [PMID: 34740635 DOI: 10.1016/j.actatropica.2021.106199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 07/14/2021] [Accepted: 10/15/2021] [Indexed: 11/16/2022]
27
Lipovsek M, Marcovich I, Elgoyhen AB. The Hair Cell α9α10 Nicotinic Acetylcholine Receptor: Odd Cousin in an Old Family. Front Cell Neurosci 2021;15:785265. [PMID: 34867208 PMCID: PMC8634148 DOI: 10.3389/fncel.2021.785265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 10/25/2021] [Indexed: 11/13/2022]  Open
28
Genome-Wide Analysis of Gene Families of Pattern Recognition Receptors in Fig Wasps (Hymenoptera, Chalcidoidea). Genes (Basel) 2021;12:genes12121952. [PMID: 34946901 PMCID: PMC8702095 DOI: 10.3390/genes12121952] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 11/25/2021] [Accepted: 12/02/2021] [Indexed: 11/17/2022]  Open
29
TwinCons: Conservation score for uncovering deep sequence similarity and divergence. PLoS Comput Biol 2021;17:e1009541. [PMID: 34714829 PMCID: PMC8580257 DOI: 10.1371/journal.pcbi.1009541] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 11/10/2021] [Accepted: 10/06/2021] [Indexed: 11/19/2022]  Open
30
Xiong R, He T, Wang Y, Liu S, Gao Y, Yan H, Xiang Y. Genome and transcriptome analysis to understand the role diversification of cytochrome P450 gene under excess nitrogen treatment. BMC PLANT BIOLOGY 2021;21:447. [PMID: 34615481 PMCID: PMC8493724 DOI: 10.1186/s12870-021-03224-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 09/23/2021] [Indexed: 06/13/2023]
31
Diez-Hermano S, Ganfornina MD, Skerra A, Gutiérrez G, Sanchez D. An Evolutionary Perspective of the Lipocalin Protein Family. Front Physiol 2021;12:718983. [PMID: 34497539 PMCID: PMC8420045 DOI: 10.3389/fphys.2021.718983] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 07/22/2021] [Indexed: 11/13/2022]  Open
32
Xu J, Hu P, Tao Y, Song P, Gao H, Guan Y. Genome-wide identification and characterization of the Lateral Organ Boundaries Domain (LBD) gene family in polyploid wheat and related species. PeerJ 2021;9:e11811. [PMID: 34447619 PMCID: PMC8364319 DOI: 10.7717/peerj.11811] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Accepted: 06/27/2021] [Indexed: 11/20/2022]  Open
33
Vasan S, Srivastava D, Cahill D, Singh PP, Adholeya A. Important innate differences in determining symbiotic responsiveness in host and non-hosts of arbuscular mycorrhiza. Sci Rep 2021;11:14444. [PMID: 34262100 PMCID: PMC8280126 DOI: 10.1038/s41598-021-93626-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Accepted: 06/29/2021] [Indexed: 11/09/2022]  Open
34
Wu S, Haltom J, Zhao W, Yang J, Zhou Z, Gu X. Evolution and functional divergence of the ERBB receptor family. Pharmacogenomics 2021;22:473-484. [PMID: 34036795 DOI: 10.2217/pgs-2020-0158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
35
Dvornyk V, Mei Q. Evolution of kaiA, a key circadian gene of cyanobacteria. Sci Rep 2021;11:9995. [PMID: 33976298 PMCID: PMC8113500 DOI: 10.1038/s41598-021-89345-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Accepted: 03/16/2021] [Indexed: 11/09/2022]  Open
36
Wei X, Li J, Xiao J, Huang D. Gene duplication and subsequent functional diversification of maltase in fig wasp (Chalcidoidea, Hymenoptera). Int J Biol Macromol 2021;182:482-491. [PMID: 33838190 DOI: 10.1016/j.ijbiomac.2021.04.031] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2021] [Revised: 03/29/2021] [Accepted: 04/05/2021] [Indexed: 10/21/2022]
37
Marcovich I, Moglie MJ, Carpaneto Freixas AE, Trigila AP, Franchini LF, Plazas PV, Lipovsek M, Elgoyhen AB. Distinct Evolutionary Trajectories of Neuronal and Hair Cell Nicotinic Acetylcholine Receptors. Mol Biol Evol 2021;37:1070-1089. [PMID: 31821508 PMCID: PMC7086180 DOI: 10.1093/molbev/msz290] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
38
Amala M, Richard M, Saritha P, Prabhu D, Veerapandiyan M, Surekha K, Jeyakanthan J. Molecular evolution, binding site interpretation and functional divergence of aspartate semialdehyde dehydrogenase. J Biomol Struct Dyn 2020;40:3223-3241. [DOI: 10.1080/07391102.2020.1846619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
39
Dornburg A, Wang Z, Wang J, Mo ES, López-Giráldez F, Townsend JP. Comparative Genomics within and across Bilaterians Illuminates the Evolutionary History of ALK and LTK Proto-Oncogene Origination and Diversification. Genome Biol Evol 2020;13:5983394. [PMID: 33196781 PMCID: PMC7851593 DOI: 10.1093/gbe/evaa228] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/23/2020] [Indexed: 12/14/2022]  Open
40
Ahrens JB, Teufel AI, Siltberg-Liberles J. A Phylogenetic Rate Parameter Indicates Different Sequence Divergence Patterns in Orthologs and Paralogs. J Mol Evol 2020;88:720-730. [PMID: 33118098 DOI: 10.1007/s00239-020-09969-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 10/15/2020] [Indexed: 10/23/2022]
41
Khan N, You FM, Datla R, Ravichandran S, Jia B, Cloutier S. Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.). BMC Genomics 2020;21:722. [PMID: 33076828 PMCID: PMC7574471 DOI: 10.1186/s12864-020-07121-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 10/05/2020] [Indexed: 12/11/2022]  Open
42
Ravhe IS, Krishnan A, Manoj N. Evolutionary history of histamine receptors: Early vertebrate origin and expansion of the H3-H4 subtypes. Mol Phylogenet Evol 2020;154:106989. [PMID: 33059072 DOI: 10.1016/j.ympev.2020.106989] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 09/30/2020] [Accepted: 10/07/2020] [Indexed: 12/22/2022]
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Yang Y, Ma K, Zhang T, Li L, Wang J, Cheng T, Zhang Q. Characteristics and Expression Analyses of Trehalose-6-Phosphate Synthase Family in Prunus mume Reveal Genes Involved in Trehalose Biosynthesis and Drought Response. Biomolecules 2020;10:biom10101358. [PMID: 32977584 PMCID: PMC7598203 DOI: 10.3390/biom10101358] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Revised: 09/20/2020] [Accepted: 09/21/2020] [Indexed: 11/16/2022]  Open
44
Martin TA, Wu T, Tang Q, Dougherty LL, Parente DJ, Swint-Kruse L, Fenton AW. Identification of biochemically neutral positions in liver pyruvate kinase. Proteins 2020;88:1340-1350. [PMID: 32449829 DOI: 10.1002/prot.25953] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 03/10/2020] [Accepted: 05/16/2020] [Indexed: 01/08/2023]
45
Meng L, Liu X, He C, Xu B, Li Y, Hu Y. Functional divergence and adaptive selection of KNOX gene family in plants. Open Life Sci 2020;15:346-363. [PMID: 33817223 PMCID: PMC7874613 DOI: 10.1515/biol-2020-0036] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 04/09/2020] [Accepted: 04/23/2020] [Indexed: 12/16/2022]  Open
46
Rheostat positions: A new classification of protein positions relevant to pharmacogenomics. Med Chem Res 2020;29:1133-1146. [PMID: 32641900 PMCID: PMC7276102 DOI: 10.1007/s00044-020-02582-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
47
Evolutionary genetic analysis of unassigned peptidase clan-associated microbial virulence and pathogenesis. Biologia (Bratisl) 2020. [DOI: 10.2478/s11756-020-00529-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
48
Exploring Evolutionary Constraints in the Proteomes of Zika, Dengue, and Other Flaviviruses to Find Fitness-Critical Sites. J Mol Evol 2020;88:399-414. [DOI: 10.1007/s00239-020-09941-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Accepted: 03/24/2020] [Indexed: 12/16/2022]
49
Zhou Y, Li Y, Li X, Li R, Xu Y, Shi L, Wang H. Apolipoprotein D in Lepidoptera: Evolution and functional divergence. Biochem Biophys Res Commun 2020;526:472-478. [PMID: 32234238 DOI: 10.1016/j.bbrc.2020.03.112] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 03/19/2020] [Indexed: 11/27/2022]
50
Evolutionary divergence of function and expression of laccase genes in plants. J Genet 2020. [DOI: 10.1007/s12041-020-1184-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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