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John A, Krämer M, Lehmann M, Kunz HH, Aarabi F, Alseekh S, Fernie A, Sommer F, Schroda M, Zimmer D, Mühlhaus T, Peisker H, Gutbrod K, Dörmann P, Neunzig J, Philippar K, Neuhaus HE. Degradation of FATTY ACID EXPORT PROTEIN1 by RHOMBOID-LIKE PROTEASE11 contributes to cold tolerance in Arabidopsis. THE PLANT CELL 2024; 36:1937-1962. [PMID: 38242838 PMCID: PMC11062452 DOI: 10.1093/plcell/koae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Revised: 12/14/2023] [Accepted: 12/15/2023] [Indexed: 01/21/2024]
Abstract
Plants need to acclimate to different stresses to optimize growth under unfavorable conditions. In Arabidopsis (Arabidopsis thaliana), the abundance of the chloroplast envelope protein FATTY ACID EXPORT PROTEIN1 (FAX1) decreases after the onset of low temperatures. However, how FAX1 degradation occurs and whether altered FAX1 abundance contributes to cold tolerance in plants remains unclear. The rapid cold-induced increase in RHOMBOID-LIKE PROTEASE11 (RBL11) transcript levels, the physical interaction of RBL11 with FAX1, the specific FAX1 degradation after RBL11 expression, and the absence of cold-induced FAX1 degradation in rbl11 loss-of-function mutants suggest that this enzyme is responsible for FAX1 degradation. Proteomic analyses showed that rbl11 mutants have higher levels of FAX1 and other proteins involved in membrane lipid homeostasis, suggesting that RBL11 is a key element in the remodeling of membrane properties during cold conditions. Consequently, in the cold, rbl11 mutants show a shift in lipid biosynthesis toward the eukaryotic pathway, which coincides with impaired cold tolerance. To test whether cold sensitivity is due to increased FAX1 levels, we analyzed FAX1 overexpressors. The rbl11 mutants and FAX1 overexpressor lines show superimposable phenotypic defects upon exposure to cold temperatures. Our re-sults show that the cold-induced degradation of FAX1 by RBL11 is critical for Arabidop-sis to survive cold and freezing periods.
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Affiliation(s)
- Annalisa John
- Plant Physiology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Moritz Krämer
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Martin Lehmann
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Hans-Henning Kunz
- Plant Biochemistry, Faculty of Biology, Ludwig-Maximilians-Universität Munich, Planegg-Martinsried 82152, Germany
| | - Fayezeh Aarabi
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Saleh Alseekh
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Alisdair Fernie
- Max Planck Institut for Molecular Plant Physiology, Central Metabolism, Potsdam D-14476, Germany
| | - Frederik Sommer
- Molecular Biotechnology and Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Michael Schroda
- Molecular Biotechnology and Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - David Zimmer
- Computational Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Timo Mühlhaus
- Computational Systems Biology, University of Kaiserslautern, Kaiserslautern D-67653, Germany
| | - Helga Peisker
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Katharina Gutbrod
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Peter Dörmann
- Institute for Molecular Physiology and Biotechnology of Plants, IMBIO, University of Bonn, Bonn D-53115, Germany
| | - Jens Neunzig
- Plant Biology, Center for Human and Molecular Biology (ZHMB), Saarland University, Saarbrücken D-66123, Germany
| | - Katrin Philippar
- Plant Biology, Center for Human and Molecular Biology (ZHMB), Saarland University, Saarbrücken D-66123, Germany
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Kumar S, Jeevaraj T, Yunus MH, Chakraborty S, Chakraborty N. The plant cytoskeleton takes center stage in abiotic stress responses and resilience. PLANT, CELL & ENVIRONMENT 2023; 46:5-22. [PMID: 36151598 DOI: 10.1111/pce.14450] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 09/16/2022] [Accepted: 09/20/2022] [Indexed: 06/16/2023]
Abstract
Stress resilience behaviours in plants are defensive mechanisms that develop under adverse environmental conditions to promote growth, development and yield. Over the past decades, improving stress resilience, especially in crop species, has been a focus of intense research for global food security and economic growth. Plants have evolved specific mechanisms to sense external stress and transmit information to the cell interior and generate appropriate responses. Plant cytoskeleton, comprising microtubules and actin filaments, takes a center stage in stress-induced signalling pathways, either as a direct target or as a signal transducer. In the past few years, it has become apparent that the function of the plant cytoskeleton and other associated proteins are not merely limited to elementary processes of cell growth and proliferation, but they also function in stress response and resilience. This review summarizes recent advances in the role of plant cytoskeleton and associated proteins in abiotic stress management. We provide a thorough overview of the mechanisms that plant cells employ to withstand different abiotic stimuli such as hypersalinity, dehydration, high temperature and cold, among others. We also discuss the crucial role of the plant cytoskeleton in organellar positioning under the influence of high light intensity.
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Affiliation(s)
- Sunil Kumar
- Stress Biology, National Institute of Plant Genome Research, New Delhi, India
| | - Theboral Jeevaraj
- Stress Biology, National Institute of Plant Genome Research, New Delhi, India
| | - Mohd H Yunus
- Stress Biology, National Institute of Plant Genome Research, New Delhi, India
| | - Subhra Chakraborty
- Stress Biology, National Institute of Plant Genome Research, New Delhi, India
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Guo J, Wang H, Liu S, Wang Y, Liu F, Li X. Parental drought priming enhances tolerance to low temperature in wheat ( Triticum aestivum) offspring. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:946-957. [PMID: 35871526 DOI: 10.1071/fp22043] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Accepted: 06/28/2022] [Indexed: 06/15/2023]
Abstract
Low temperature is one of the major environmental stresses that limit crop growth and grain yield in wheat (Triticum aestivum L.). Drought priming at the vegetative stage could enhance wheat tolerance to later cold stress; however, the transgenerational effects of drought priming on wheat offspring's cold stress tolerance remains unclear. Here, the low temperature responses of offspring were tested after the parental drought priming treatment at grain filling stage. The offspring plants from parental drought priming treatment had a higher abscisic acid (ABA) level and lower osmotic potential (Ψo) than the control plants under cold conditions. Moreover, parental drought priming increased the antioxidant enzyme activities and decreased hydrogen peroxide (H2 O2 ) accumulation in offspring. In comparison to control plants, parental drought priming plants had a higher ATP concentration and higher activities of ATPase and the enzymes involved in sucrose biosynthesis and starch metabolism. The results indicated that parental drought priming induced low temperature tolerance in offspring by regulating endogenous ABA levels and maintaining the redox homeostasis and the balance of carbohydrate metabolism, which provided a potential approach for cold resistant cultivation in wheat.
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Affiliation(s)
- Junhong Guo
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China; and University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongyan Wang
- Laboratory of Plant Epigenetics and Evolution, School of Life Science, Liaoning University, Shenyang 110036, China
| | - Shengqun Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Yongjun Wang
- Institute of Agricultural Resources and Environment, Jilin Academy of Agriculture Sciences/State Engineering Laboratory of Maize, Changchun 130033, China
| | - Fulai Liu
- University of Copenhagen, Faculty of Science, Department of Plant and Environmental Sciences, Højbakkegård Allé 13, Tåstrup DK-2630, Denmark
| | - Xiangnan Li
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China; and University of Chinese Academy of Sciences, Beijing 100049, China; and CAS Engineering Laboratory for Eco-agriculture in Water Source of Liaoheyuan, Chinese Academy of Science, Changchun 130102, China
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Seydel C, Kitashova A, Fürtauer L, Nägele T. Temperature-induced dynamics of plant carbohydrate metabolism. PHYSIOLOGIA PLANTARUM 2022; 174:e13602. [PMID: 34802152 DOI: 10.1111/ppl.13602] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 11/16/2021] [Indexed: 06/13/2023]
Abstract
Carbohydrates are direct products of photosynthetic CO2 assimilation. Within a changing temperature regime, both photosynthesis and carbohydrate metabolism need tight regulation to prevent irreversible damage of plant tissue and to sustain energy metabolism, growth and development. Due to climate change, plants are and will be exposed to both long-term and short-term temperature changes with increasing amplitude. Particularly sudden fluctuations, which might comprise a large temperature amplitude from low to high temperature, pose a challenge for plants from the cellular to the ecosystem level. A detailed understanding of fundamental regulatory processes, which link photosynthesis and carbohydrate metabolism under such fluctuating environmental conditions, is essential for an estimate of climate change consequences. Further, understanding these processes is important for biotechnological application, breeding and engineering. Environmental light and temperature regimes are sensed by a molecular network that comprises photoreceptors and molecular components of the circadian clock. Photosynthetic efficiency and plant productivity then critically depend on enzymatic regulation and regulatory circuits connecting plant cells with their environment and re-stabilising photosynthetic efficiency and carbohydrate metabolism after temperature-induced deflection. This review summarises and integrates current knowledge about re-stabilisation of photosynthesis and carbohydrate metabolism after perturbation by changing temperature (heat and cold).
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Affiliation(s)
- Charlotte Seydel
- Faculty of Biology, Plant Development, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
- Faculty of Biology, Plant Evolutionary Cell Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Anastasia Kitashova
- Faculty of Biology, Plant Evolutionary Cell Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Lisa Fürtauer
- Institute for Biology III, Unit of Plant Molecular Systems Biology, RWTH Aachen University, Aachen, Germany
| | - Thomas Nägele
- Faculty of Biology, Plant Evolutionary Cell Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
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Syngelaki E, Paetzold C, Hörandl E. Gene Expression Profiles Suggest a Better Cold Acclimation of Polyploids in the Alpine Species Ranunculus kuepferi (Ranunculaceae). Genes (Basel) 2021; 12:genes12111818. [PMID: 34828424 PMCID: PMC8625111 DOI: 10.3390/genes12111818] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 11/16/2021] [Accepted: 11/17/2021] [Indexed: 12/17/2022] Open
Abstract
Alpine habitats are shaped by harsh abiotic conditions and cold climates. Temperature stress can affect phenotypic plasticity, reproduction, and epigenetic profiles, which may affect acclimation and adaptation. Distribution patterns suggest that polyploidy seems to be advantageous under cold conditions. Nevertheless, whether temperature stress can induce gene expression changes in different cytotypes, and how the response is initialized through gene set pathways and epigenetic control remain vague for non-model plants. The perennial alpine plant Ranunculus kuepferi was used to investigate the effect of cold stress on gene expression profiles. Diploid and autotetraploid individuals were exposed to cold and warm conditions in climate growth chambers and analyzed via transcriptome sequencing and qRT-PCR. Overall, cold stress changed gene expression profiles of both cytotypes and induced cold acclimation. Diploids changed more gene set pathways than tetraploids, and suppressed pathways involved in ion/cation homeostasis. Tetraploids mostly activated gene set pathways related to cell wall and plasma membrane. An epigenetic background for gene regulation in response to temperature conditions is indicated. Results suggest that perennial alpine plants can respond to temperature extremes via altered gene expression. Tetraploids are better acclimated to cold conditions, enabling them to colonize colder climatic areas in the Alps.
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Affiliation(s)
- Eleni Syngelaki
- Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), Georg-August-Universität Göttingen, 37073 Göttingen, Germany;
- Correspondence:
| | - Claudia Paetzold
- Department of Botany and Molecular Evolution, Senckenberg Research Institute, 60325 Frankfurt am Main, Germany;
| | - Elvira Hörandl
- Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), Georg-August-Universität Göttingen, 37073 Göttingen, Germany;
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Ponce-Pineda IG, Carmona-Salazar L, Saucedo-García M, Cano-Ramírez D, Morales-Cedillo F, Peña-Moral A, Guevara-García ÁA, Sánchez-Nieto S, Gavilanes-Ruíz M. MPK6 Kinase Regulates Plasma Membrane H +-ATPase Activity in Cold Acclimation. Int J Mol Sci 2021; 22:6338. [PMID: 34199294 PMCID: PMC8232009 DOI: 10.3390/ijms22126338] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2021] [Revised: 06/04/2021] [Accepted: 06/07/2021] [Indexed: 02/07/2023] Open
Abstract
Cold and freezing stresses severely affect plant growth, development, and survival rate. Some plant species have evolved a process known as cold acclimation, in which plants exposed to temperatures above 0 °C trigger biochemical and physiological changes to survive freezing. During this response, several signaling events are mediated by transducers, such as mitogen activated protein kinase (MAPK) cascades. Plasma membrane H+-ATPase is a key enzyme for the plant cell life under regular and stress conditions. Using wild type and mpk3 and mpk6 knock out mutants in Arabidopsis thaliana, we explored the transcriptional, translational, and 14-3-3 protein regulation of the plasma membrane H+-ATPase activity under the acclimation process. The kinetic analysis revealed a differential profiling of the H+-ATPase activity depending on the presence or absence of MPK3 or MPK6 under non-acclimated or acclimated conditions. Negative regulation of the plasma membrane H+-ATPase activity was found to be exerted by MPK3 in non-acclimated conditions and by MPK6 in acclimated conditions, describing a novel form of regulation of this master ATPase. The MPK6 regulation involved changes in plasma membrane fluidity. Moreover, our results indicated that MPK6 is a critical regulator in the process of cold acclimation that leads to freezing tolerance and further survival.
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Affiliation(s)
- Ilian Giordano Ponce-Pineda
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
| | - Laura Carmona-Salazar
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
| | - Mariana Saucedo-García
- Instituto de Ciencias Agropecuarias, Universidad Autónoma del Estado de Hidalgo, Avenida Universidad Km. 1, Rancho Universitario, Tulancingo-Santiago Tulantepec, Tulancingo, Hidalgo 43600, Mexico;
| | - Dora Cano-Ramírez
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK
| | - Francisco Morales-Cedillo
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
| | - Araceli Peña-Moral
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
| | - Ángel Arturo Guevara-García
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos 62210, Mexico;
| | - Sobeida Sánchez-Nieto
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
| | - Marina Gavilanes-Ruíz
- Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico; (I.G.P.-P.); (L.C.-S.); (D.C.-R.); (F.M.-C.); (A.P.-M.); (S.S.-N.)
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Resemann HC, Herrfurth C, Feussner K, Hornung E, Ostendorf AK, Gömann J, Mittag J, van Gessel N, Vries JD, Ludwig-Müller J, Markham J, Reski R, Feussner I. Convergence of sphingolipid desaturation across over 500 million years of plant evolution. NATURE PLANTS 2021; 7:219-232. [PMID: 33495556 DOI: 10.1038/s41477-020-00844-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2020] [Accepted: 12/18/2020] [Indexed: 05/16/2023]
Abstract
For plants, acclimation to low temperatures is fundamental to survival. This process involves the modification of lipids to maintain membrane fluidity. We previously identified a new cold-induced putative desaturase in Physcomitrium (Physcomitrella) patens. Lipid profiles of null mutants of this gene lack sphingolipids containing monounsaturated C24 fatty acids, classifying the new protein as sphingolipid fatty acid denaturase (PpSFD). PpSFD mutants showed a cold-sensitive phenotype as well as higher susceptibility to the oomycete Pythium, assigning functions in stress tolerance for PpSFD. Ectopic expression of PpSFD in the Atads2.1 (acyl coenzyme A desaturase-like 2) Arabidopsis thaliana mutant functionally complemented its cold-sensitive phenotype. While these two enzymes catalyse a similar reaction, their evolutionary origin is clearly different since AtADS2 is a methyl-end desaturase whereas PpSFD is a cytochrome b5 fusion desaturase. Altogether, we suggest that adjustment of membrane fluidity evolved independently in mosses and seed plants, which diverged more than 500 million years ago.
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Affiliation(s)
- Hanno Christoph Resemann
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany
| | - Cornelia Herrfurth
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany
- Goettingen Metabolomics and Lipidomics Laboratory, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, Germany
| | - Kirstin Feussner
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany
- Goettingen Metabolomics and Lipidomics Laboratory, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, Germany
| | - Ellen Hornung
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany
| | - Anna K Ostendorf
- Plant Biotechnology, Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Jasmin Gömann
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany
| | - Jennifer Mittag
- Institute of Botany, Technical University Dresden, Dresden, Germany
| | - Nico van Gessel
- Plant Biotechnology, Faculty of Biology, University of Freiburg, Freiburg, Germany
| | - Jan de Vries
- Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goettingen, Germany
- Applied Bioinformatics, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, Germany
- Campus Institute Data Science (CIDAS), University of Goettingen, Goettingen, Germany
| | | | - Jennifer Markham
- Center for Plant Science Innovation and Department of Biochemistry, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Ralf Reski
- Plant Biotechnology, Faculty of Biology, University of Freiburg, Freiburg, Germany.
- Signalling Research Centers BIOSS and CIBSS, University of Freiburg, Freiburg, Germany.
| | - Ivo Feussner
- Plant Biochemistry, Albrecht-von-Haller-Institute for Plant Sciences, University of Goettingen, Goettingen, Germany.
- Goettingen Metabolomics and Lipidomics Laboratory, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, Germany.
- Plant Biochemistry, Goettingen Center for Molecular Biosciences (GZMB), University of Goettingen, Goettingen, Germany.
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8
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Ripley BS, Edwardes A, Rossouw MW, Smith VR, Midgley GF. Invasive grasses of sub-Antarctic Marion Island respond to increasing temperatures at the expense of chilling tolerance. ANNALS OF BOTANY 2020; 125:765-773. [PMID: 31583397 PMCID: PMC7182586 DOI: 10.1093/aob/mcz156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 10/01/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND AIMS Global warming has large effects on the performance and spatial distribution of plants, and increasingly facilitates the spread of invasive species. Particularly vulnerable is the vegetation of cold environments where indigenous plants selected for cold tolerance can have reduced phenotypic plasticity and associated lower capacity to respond to warming temperatures. In contrast, invasive species can be phenotypically plastic and respond positively to climate change, but at the expense of stress tolerance. METHODS We investigate this trade-off in traits, measuring the photosynthetic response to warming, chilling tolerance and specific leaf area (SLA) of Pooid grasses. We compare this between invasive and non-invasive grasses and correlate this to their range expansions on a cold sub-Antarctic island that has warmed significantly in the past five decades. We determined whether these responses remained consistent after temperature acclimation. KEY RESULTS Invasive species responded strongly to warming, increasing photosynthetic rates by up to 2-fold, while non-invasive species did not respond. The response was associated with increased stomatal conductance, but not with modified photosynthetic metabolism. Electrolyte leakage and SLA were higher in invasive than in non-invasive species. Acclimation altered the photosynthetic response and invasive species responded to warm temperatures irrespective of acclimation, while non-invasive species responded only after acclimation to warm temperature. CONCLUSIONS Traits scaled linearly with rates of range expansion and demonstrate that under sub-Antarctic conditions, anthropogenic warming over the last 50 years may have favoured species with greater capacity to respond photosynthetically to warming to the detriment of species that cannot, and negated the advantage that chilling tolerance would have conferred on endemic species in the past. This suggests that species of cold ecosystems could be particularly vulnerable to warming as selection for stress tolerance has limited their responsiveness to environmental change, while introduced invasive species may have no such limitations. We show mechanistic evidence of the physiology that underpins an apparent trade-off between warming and chilling tolerance traits.
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Affiliation(s)
- Brad S Ripley
- Botany Department, Rhodes University, Grahamstown, South Africa
| | - Amy Edwardes
- Department of Botany & Zoology, Stellenbosch University, Matieland, South Africa
| | - Marius W Rossouw
- Department of Botany & Zoology, Stellenbosch University, Matieland, South Africa
| | - Valdon R Smith
- Department of Botany & Zoology, Stellenbosch University, Matieland, South Africa
| | - Guy F Midgley
- Department of Botany & Zoology, Stellenbosch University, Matieland, South Africa
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9
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Sanderson BJ, Park S, Jameel MI, Kraft JC, Thomashow MF, Schemske DW, Oakley CG. Genetic and physiological mechanisms of freezing tolerance in locally adapted populations of a winter annual. AMERICAN JOURNAL OF BOTANY 2020; 107:250-261. [PMID: 31762012 PMCID: PMC7065183 DOI: 10.1002/ajb2.1385] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 08/14/2019] [Indexed: 05/22/2023]
Abstract
PREMISE Despite myriad examples of local adaptation, the phenotypes and genetic variants underlying such adaptive differentiation are seldom known. Recent work on freezing tolerance and local adaptation in ecotypes of Arabidopsis thaliana from Italy and Sweden provides an essential foundation for uncovering the genotype-phenotype-fitness map for an adaptive response to a key environmental stress. METHODS We examined the consequences of a naturally occurring loss-of-function (LOF) mutation in an Italian allele of the gene that encodes the transcription factor CBF2, which underlies a major freezing-tolerance locus. We used four lines with a Swedish genetic background, each containing a LOF CBF2 allele. Two lines had introgression segments containing the Italian CBF2 allele, and two contained deletions created using CRISPR-Cas9. We used a growth chamber experiment to quantify freezing tolerance and gene expression before and after cold acclimation. RESULTS Freezing tolerance was lower in the Italian (11%) compared to the Swedish (72%) ecotype, and all four experimental CBF2 LOF lines had reduced freezing tolerance compared to the Swedish ecotype. Differential expression analyses identified 10 genes for which all CBF2 LOF lines, and the IT ecotype had similar patterns of reduced cold responsive expression compared to the SW ecotype. CONCLUSIONS We identified 10 genes that are at least partially regulated by CBF2 that may contribute to the differences in cold-acclimated freezing tolerance between the Italian and Swedish ecotypes. These results provide novel insight into the molecular and physiological mechanisms connecting a naturally occurring sequence polymorphism to an adaptive response to freezing conditions.
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Affiliation(s)
- Brian J. Sanderson
- Department of Botany and Plant Pathology and the Purdue Center for Plant BiologyPurdue UniversityWest LafayetteINUSA
| | - Sunchung Park
- MSU‐DOE Plant Research Laboratory and the Plant Resilience InstituteMichigan State UniversityEast LansingMIUSA
- Present address:
USDA ARS SalinasCAUSA
| | - M. Inam Jameel
- Department of Botany and Plant Pathology and the Purdue Center for Plant BiologyPurdue UniversityWest LafayetteINUSA
- Present address:
Department of GeneticsUniversity of GeorgiaAthensGAUSA
| | - Joshua C. Kraft
- Department of Botany and Plant Pathology and the Purdue Center for Plant BiologyPurdue UniversityWest LafayetteINUSA
| | - Michael F. Thomashow
- MSU‐DOE Plant Research Laboratory and the Plant Resilience InstituteMichigan State UniversityEast LansingMIUSA
| | - Douglas W. Schemske
- Department of Plant Biology, and W. K. Kellogg Biological StationMichigan State UniversityEast LansingMIUSA
| | - Christopher G. Oakley
- Department of Botany and Plant Pathology and the Purdue Center for Plant BiologyPurdue UniversityWest LafayetteINUSA
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10
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Do Ru A, Çak Rlar H. Is leaf age a predictor for cold tolerance in winter oilseed rape plants? FUNCTIONAL PLANT BIOLOGY : FPB 2020; 47:250-262. [PMID: 32024581 DOI: 10.1071/fp19200] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Accepted: 11/02/2019] [Indexed: 06/10/2023]
Abstract
In the present study, low temperature-dependent physiological changes were investigated through photosynthetic activity and some endogenous mechanisms in two winter oilseed rape cultivars (Brassica napus L. ssp. oleifera cvv. Eurol and Hansen) on the basis of leaf age. Chlorophyll fluorescence measurements demonstrated that low temperature caused decreased photosynthetic activity in both cultivars. However, photosynthetic apparatus in the young leaves of Hansen is more tolerant to low temperature as demonstrated by lower F0 (minimum fluorescence yield) and 1-qp (excitation pressure of photosystem II), higher Fm (maximum fluorescence yield), Fv/Fm and non-photochemical quenching (NPQ) compared with Eurol. In addition, young leaves of Hansen represented marked increase in some antioxidant enzyme activities (superoxide dismutase (SOD), ascorbate peroxidase (APX) and glutathione reductase (GR)) during cold exposure. In the young leaves of Eurol, however, APX and GR activity was decreased by low temperature, indicating lower efficiency of ascorbate-glutathione cycle. Lower antioxidant activity in the young leaves of Eurol may be responsible for increased malondialdehyde (MDA), H2O2 and membrane damage and decreased chlorophyll content as a result of oxidative damage during cold exposure. In the cold-stressed mature leaves, both cultivars represented similar antioxidant capacities and photosynthetic efficiency. As a consequence, coordinated increase in SOD, APX and GR activities, increased capacity to keep quinone A (QA) in an oxidised state (as indicated by lower 1-qp) and accumulation of soluble sugar and proline could be mainly attributed to higher level of tolerance of the young leaves of Hansen to low temperature when compared with Eurol.
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Affiliation(s)
- Ali Do Ru
- Sakarya University, Faculty of Arts and Sciences, Department of Biology, Esentepe, 54187, Sakarya, Turkey; and Corresponding author.
| | - Hüsnü Çak Rlar
- Hacettepe University, Faculty of Science, Department of Biology, 06800, Beytepe, Ankara, Turkey
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Panter PE, Kent O, Dale M, Smith SJ, Skipsey M, Thorlby G, Cummins I, Ramsay N, Begum RA, Sanhueza D, Fry SC, Knight MR, Knight H. MUR1-mediated cell-wall fucosylation is required for freezing tolerance in Arabidopsis thaliana. THE NEW PHYTOLOGIST 2019; 224:1518-1531. [PMID: 31549420 PMCID: PMC6899859 DOI: 10.1111/nph.16209] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 07/28/2019] [Indexed: 05/20/2023]
Abstract
Forward genetic screens play a key role in the identification of genes contributing to plant stress tolerance. Using a screen for freezing sensitivity, we have identified a novel freezing tolerance gene, SENSITIVE-TO-FREEZING8, in Arabidopsis thaliana. We identified SFR8 using recombination-based mapping and whole-genome sequencing. As SFR8 was predicted to have an effect on cell wall composition, we used GC-MS and polyacrylamide gel electrophoresis to measure cell-wall fucose and boron (B)-dependent dimerization of the cell-wall pectic domain rhamnogalacturonan II (RGII) in planta. After treatments to promote borate-bridging of RGII, we assessed freeze-induced damage in wild-type and sfr8 plants by measuring electrolyte leakage from freeze-thawed leaf discs. We mapped the sfr8 mutation to MUR1, a gene encoding the fucose biosynthetic enzyme GDP-d-mannose-4,6-dehydratase. sfr8 cell walls exhibited low cell-wall fucose levels and reduced RGII bridging. Freezing sensitivity of sfr8 mutants was ameliorated by B supplementation, which can restore RGII dimerization. B transport mutants with reduced RGII dimerization were also freezing-sensitive. Our research identifies a role for the structure and composition of the plant primary cell wall in determining basal plant freezing tolerance and highlights the specific importance of fucosylation, most likely through its effect on the ability of RGII pectin to dimerize.
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Affiliation(s)
- Paige E. Panter
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Olivia Kent
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Maeve Dale
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Sarah J. Smith
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Mark Skipsey
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Glenn Thorlby
- Scion49 Sala Street, Private Bag 3020Rotorua3046New Zealand
| | - Ian Cummins
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Nathan Ramsay
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Rifat A. Begum
- Institute of Molecular Plant SciencesThe University of EdinburghDaniel Rutherford Building, The King’s Buildings, Max Born CrescentEdinburghEH9 3BFUK
| | - Dayan Sanhueza
- Institute of Molecular Plant SciencesThe University of EdinburghDaniel Rutherford Building, The King’s Buildings, Max Born CrescentEdinburghEH9 3BFUK
| | - Stephen C. Fry
- Institute of Molecular Plant SciencesThe University of EdinburghDaniel Rutherford Building, The King’s Buildings, Max Born CrescentEdinburghEH9 3BFUK
| | - Marc R. Knight
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
| | - Heather Knight
- Department of Biosciences & Durham Centre for Crop Improvement TechnologyDurham UniversitySouth RoadDurhamDH1 3LEUK
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Cheong BE, Ho WWH, Biddulph B, Wallace X, Rathjen T, Rupasinghe TWT, Roessner U, Dolferus R. Phenotyping reproductive stage chilling and frost tolerance in wheat using targeted metabolome and lipidome profiling. Metabolomics 2019; 15:144. [PMID: 31630279 PMCID: PMC6800866 DOI: 10.1007/s11306-019-1606-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/12/2019] [Accepted: 10/10/2019] [Indexed: 12/15/2022]
Abstract
INTRODUCTION Frost events lead to A$360 million of yield losses annually to the Australian wheat industry, making improvement of chilling and frost tolerance an important trait for breeding. OBJECTIVES This study aimed to use metabolomics and lipidomics to explore genetic variation in acclimation potential to chilling and to identify metabolite markers for chilling tolerance in wheat. METHODS We established a controlled environment screening assay that is able to reproduce field rankings of wheat germplasm for chilling and frost tolerance. This assay, together with targeted metabolomics and lipidomics approaches, were used to compare metabolite and lipid levels in flag leaves of two wheat varieties with contrasting chilling tolerance. RESULTS The sensitive variety Wyalkatchem showed a strong reduction in amino acids after the first cold night, followed by accumulation of osmolytes such as fructose, glucose, putrescine and shikimate over a 4-day period. Accumulation of osmolytes is indicative of acclimation to water stress in Wyalkatchem. This response was not observed for tolerant variety Young. The two varieties also displayed significant differences in lipid accumulation. Variation in two lipid clusters, resulted in a higher unsaturated to saturated lipid ratio in Young after 4 days cold treatment and the lipids PC(34:0), PC(34:1), PC(35:1), PC(38:3), and PI(36:4) were the main contributors to the unsaturated to saturated ratio change. This indicates that Young may have superior ability to maintain membrane fluidity following cold exposure, thereby avoiding membrane damage and water stress observed for Wyalkatchem. CONCLUSION Our study suggests that metabolomics and lipidomics markers could be used as an alternative phenotyping method to discriminate wheat varieties with differences in cold acclimation.
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Affiliation(s)
- Bo Eng Cheong
- School of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
| | - William Wing Ho Ho
- School of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
- Melbourne Integrative Genomics, Schools of Mathematics and Statistics and of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
| | - Ben Biddulph
- Department of Primary Industries and Regional Development, 3 Baron Hay Court, South Perth, WA 6151 Australia
| | - Xiaomei Wallace
- CSIRO Agriculture & Food, GPO Box 1700, Canberra, ACT 2601 Australia
| | - Tina Rathjen
- CSIRO Agriculture & Food, GPO Box 1700, Canberra, ACT 2601 Australia
| | - Thusitha W. T. Rupasinghe
- Metabolomics Australia, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
| | - Ute Roessner
- School of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
- Metabolomics Australia, School of BioSciences, The University of Melbourne, Melbourne, VIC 3010 Australia
| | - Rudy Dolferus
- CSIRO Agriculture & Food, GPO Box 1700, Canberra, ACT 2601 Australia
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Pe PPW, Naing AH, Chung MY, Park KI, Kim CK. The role of antifreeze proteins in the regulation of genes involved in the response of Hosta capitata to cold. 3 Biotech 2019; 9:335. [PMID: 31475087 DOI: 10.1007/s13205-019-1859-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Accepted: 08/02/2019] [Indexed: 11/27/2022] Open
Abstract
Cold temperatures are a major source of stress for plants and negatively impact crop yield. A possible way to protect plants is to treat them with antifreeze proteins (AFPs). Here, we investigated whether fish AFPs can shield the rare ornamental species Hosta capitata from low-temperature stress. We elucidated the expression patterns of the cold-inducible genes C-repeat binding factor 1 (CBF1) and dehydrin 1 (DHN1), as well as the antioxidant genes superoxide dismutase (SOD) and catalase (CAT). All were upregulated at low temperature (4 °C). With increasing exposure time, CBF1 and DHN1 expression generally rose (except CBF1 at 48 h). In contrast, SOD and CAT expression gradually declined from 6 to 48 h. Depending on exposure duration, AFP regulation of gene transcription varied with concentration. However, compared with other concentrations, 100 µg/L AFP reduced CBF1 and DHN1 expression and increased SOD and CAT expression in plants, regardless of exposure time. Both AFP I and III were likely to be most effective at protecting plants against cold stress at concentrations of 100 µg/L. Their involvement in H. capitata cold-stress treatment occurred through regulating the expression of important stress-response genes.
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Affiliation(s)
- Phyo Phyo Win Pe
- 1Department of Horticulture and Life Science, Yeungnam University, Geyongsan, South Korea
- 2Department of Horticulture, Yezin Agricultural University, Nay Pyi Taw, Myanmar
| | - Aung Htay Naing
- 3Department of Horticultural Science, Kyungpook National University, Daegu, South Korea
| | - Mi Young Chung
- 4Department of Agricultural Education, Sunchon National University, Suncheon, South Korea
| | - Kyeung Il Park
- 1Department of Horticulture and Life Science, Yeungnam University, Geyongsan, South Korea
| | - Chang Kil Kim
- 3Department of Horticultural Science, Kyungpook National University, Daegu, South Korea
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Ma H, Liu M. The microtubule cytoskeleton acts as a sensor for stress response signaling in plants. Mol Biol Rep 2019; 46:5603-5608. [PMID: 31098806 DOI: 10.1007/s11033-019-04872-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Accepted: 05/13/2019] [Indexed: 01/17/2023]
Abstract
Stress tolerance pathways are protective mechanisms that have evolved to protect plant growth and increase production under various environmental stress conditions. Enhancing stress tolerance in crop plants has become an area of intense study with aims of increasing crop production and enhancing economic benefits. A growing number of studies suggest that in addition to playing vital roles in mechanical architecture and cell division, microtubules are also involved the adaptation to severe environmental conditions in plants. However, the mechanisms that integrate microtubule regulation, cellular metabolism and cell signaling in plant stress responses remain unclear. Recent studies suggest that microtubules act as sensors for different abiotic stresses and maintain mechanical stability by forming bundles. Characterizing the diverse roles of plant microtubules is vital to furthering our understanding of stress tolerance in plants.
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Affiliation(s)
- Huixian Ma
- College of Life Sciences, Shandong Normal University, Jinan, 250014, China
| | - Min Liu
- College of Life Sciences, Shandong Normal University, Jinan, 250014, China.
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15
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Baier M, Bittner A, Prescher A, van Buer J. Preparing plants for improved cold tolerance by priming. PLANT, CELL & ENVIRONMENT 2019; 42:782-800. [PMID: 29974962 DOI: 10.1111/pce.13394] [Citation(s) in RCA: 52] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2018] [Revised: 06/21/2018] [Accepted: 06/25/2018] [Indexed: 05/26/2023]
Abstract
Cold is a major stressor, which limits plant growth and development in many parts of the world, especially in the temperate climate zones. A large number of experimental studies has demonstrated that not only acclimation and entrainment but also the experience of single short stress events of various abiotic or biotic kinds (priming stress) can improve the tolerance of plants to chilling temperatures. This process, called priming, depends on a stress "memory". It does not change cold sensitivity per se but beneficially modifies the response to cold and can last for days, months, or even longer. Elicitor factors and antagonists accumulate due to increased biosynthesis or decreased degradation either during or after the priming stimulus. Comparison of priming studies investigating improved tolerance to chilling temperatures highlighted key regulatory functions of ROS/RNS and antioxidant enzymes, plant hormones, especially jasmonates, salicylates, and abscisic acid, and signalling metabolites, such as β- and γ-aminobutyric acid (BABA and GABA) and melatonin. We conclude that these elicitors and antagonists modify local and systemic cold tolerance by integration into cold-induced signalling cascades.
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Affiliation(s)
- Margarete Baier
- Plant Physiology, Dahlem Centre of Plant Sciences, Free University of Berlin, Berlin, Germany
| | - Andras Bittner
- Plant Physiology, Dahlem Centre of Plant Sciences, Free University of Berlin, Berlin, Germany
| | - Andreas Prescher
- Plant Physiology, Dahlem Centre of Plant Sciences, Free University of Berlin, Berlin, Germany
| | - Jörn van Buer
- Plant Physiology, Dahlem Centre of Plant Sciences, Free University of Berlin, Berlin, Germany
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16
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Mishra KB, Mishra A, Kubásek J, Urban O, Heyer AG. Low temperature induced modulation of photosynthetic induction in non-acclimated and cold-acclimated Arabidopsis thaliana: chlorophyll a fluorescence and gas-exchange measurements. PHOTOSYNTHESIS RESEARCH 2019; 139:123-143. [PMID: 30306531 DOI: 10.1007/s11120-018-0588-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 09/24/2018] [Indexed: 05/23/2023]
Abstract
Cold acclimation modifies the photosynthetic machinery and enables plants to survive at sub-zero temperatures, whereas in warm habitats, many species suffer even at non-freezing temperatures. We have measured chlorophyll a fluorescence (ChlF) and CO2 assimilation to investigate the effects of cold acclimation, and of low temperatures, on a cold-sensitive Arabidopsis thaliana accession C24. Upon excitation with low intensity (40 µmol photons m- 2 s- 1) ~ 620 nm light, slow (minute range) ChlF transients, at ~ 22 °C, showed two waves in the SMT phase (S, semi steady-state; M, maximum; T, terminal steady-state), whereas CO2 assimilation showed a linear increase with time. Low-temperature treatment (down to - 1.5 °C) strongly modulated the SMT phase and stimulated a peak in the CO2 assimilation induction curve. We show that the SMT phase, at ~ 22 °C, was abolished when measured under high actinic irradiance, or when 3-(3, 4-dichlorophenyl)-1, 1- dimethylurea (DCMU, an inhibitor of electron flow) or methyl viologen (MV, a Photosystem I (PSI) electron acceptor) was added to the system. Our data suggest that stimulation of the SMT wave, at low temperatures, has multiple reasons, which may include changes in both photochemical and biochemical reactions leading to modulations in non-photochemical quenching (NPQ) of the excited state of Chl, "state transitions," as well as changes in the rate of cyclic electron flow through PSI. Further, we suggest that cold acclimation, in accession C24, promotes "state transition" and protects photosystems by preventing high excitation pressure during low-temperature exposure.
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Affiliation(s)
- Kumud B Mishra
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00, Brno, Czech Republic.
- Department of Experimental Biology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.
| | - Anamika Mishra
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00, Brno, Czech Republic
| | - Jiří Kubásek
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00, Brno, Czech Republic
| | - Otmar Urban
- Global Change Research Institute, Czech Academy of Sciences, Bělidla 986/4a, 603 00, Brno, Czech Republic
| | - Arnd G Heyer
- Department of Plant Biotechnology, Institute of Biomaterials and Biomolecular Systems, University of Stuttgart, Pfaffenwaldring 57, 70567, Stuttgart, Germany
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17
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Chai F, Liu W, Xiang Y, Meng X, Sun X, Cheng C, Liu G, Duan L, Xin H, Li S. Comparative metabolic profiling of Vitis amurensis and Vitis vinifera during cold acclimation. HORTICULTURE RESEARCH 2019; 6:8. [PMID: 30603094 PMCID: PMC6312538 DOI: 10.1038/s41438-018-0083-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Revised: 07/19/2018] [Accepted: 08/01/2018] [Indexed: 05/20/2023]
Abstract
Vitis amurensis is a wild Vitis plant that can withstand extreme cold temperatures. However, the accumulation of metabolites during cold acclimation (CA) in V. amurensis remains largely unknown. In this study, plantlets of V. amurensis and V. vinifera cv. Muscat of Hamburg were treated at 4 °C for 24 and 72 h, and changes of metabolites in leaves were detected by gas chromatography coupled with time-of-flight mass spectrometry. Most of the identified metabolites, including carbohydrates, amino acids, and organic acids, accumulated in the two types of grape after CA. Galactinol, raffinose, fructose, mannose, glycine, and ascorbate were continuously induced by cold in V. amurensis, but not in Muscat of Hamburg. Twelve metabolites, including isoleucine, valine, proline, 2-oxoglutarate, and putrescine, increased in V. amurensis during CA. More galactinol, ascorbate, 2-oxoglutarate, and putrescine, accumulated in V. amurensis, but not in Muscat of Hamburg, during CA, which may be responsible for the excellent cold tolerance in V. amurensis. The expression levels of the genes encoding β-amylase (BAMY), galactinol synthase (GolS), and raffinose synthase (RafS) were evaluated by quantitative reverse transcription-PCR. The expression BAMY (VIT_02s0012 g00170) and RafS (VIT_05s0077 g00840) were primarily responsible for the accumulation of maltose and raffinose, respectively. The accumulation of galactinol was attributed to different members of GolS in the two grapes. In conclusion, these results show the inherent differences in metabolites between V. amurensis and V. vinifera under CA.
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Affiliation(s)
- Fengmei Chai
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, P.R. China
- Beijing Key Laboratory of Grape Sciences and Enology, CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China
- University of Chinese Academy of Sciences, Beijing, P.R. China
| | - Wenwen Liu
- Beijing Key Laboratory of Grape Sciences and Enology, CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China
- University of Chinese Academy of Sciences, Beijing, P.R. China
| | - Yue Xiang
- University of Chinese Academy of Sciences, Beijing, P.R. China
| | - Xianbin Meng
- Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China
| | - Xiaoming Sun
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, P.R. China
- Beijing Key Laboratory of Grape Sciences and Enology, CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China
| | - Cheng Cheng
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, P.R. China
- University of Chinese Academy of Sciences, Beijing, P.R. China
| | - Guotian Liu
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Horticulture, Northwest A&F University, Yangling, Shaanxi P.R. China
| | - Lixin Duan
- International Institute for Translational Chinese Medicine, Guangzhou University of Chinese Medicine, Guangzhou, P.R. China
| | - Haiping Xin
- Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, P.R. China
| | - Shaohua Li
- Beijing Key Laboratory of Grape Sciences and Enology, CAS Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, P.R. China
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Lorenzo M, Pinedo ML, Equiza MA, Fernández PV, Ciancia M, Ganem DG, Tognetti JA. Changes in apoplastic peroxidase activity and cell wall composition are associated with cold-induced morpho-anatomical plasticity of wheat leaves. PLANT BIOLOGY (STUTTGART, GERMANY) 2019; 21 Suppl 1:84-94. [PMID: 29444373 DOI: 10.1111/plb.12709] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Accepted: 02/09/2018] [Indexed: 06/08/2023]
Abstract
Temperate grasses, such as wheat, become compact plants with small thick leaves after exposure to low temperature. These responses are associated with cold hardiness, but their underlying mechanisms remain largely unknown. Here we analyse the effects of low temperature on leaf morpho-anatomical structure, cell wall composition and activity of extracellular peroxidases, which play key roles in cell elongation and cell wall thickening, in two wheat cultivars with contrasting cold-hardening ability. A combined microscopy and biochemical approach was applied to study actively growing leaves of winter (ProINTA-Pincén) and spring (Buck-Patacón) wheat developed under constant warm (25 °C) or cool (5 °C) temperature. Cold-grown plants had shorter leaves but longer inter-stomatal epidermal cells than warm-grown plants. They had thicker walls in metaxylem vessels and mestome sheath cells, paralleled with accumulation of wall components, predominantly hemicellulose. These effects were more pronounced in the winter cultivar (Pincén). Cold also induced a sharp decrease in apoplastic peroxidase activity within the leaf elongating zone of Pincén, and a three-fold increase in the distal mature zone of the leaf. This was consistent with the enhanced cell length and thicker cell walls in this cultivar at 5 °C. The different response to low temperature of apoplastic peroxidase activity and hemicellulose between leaf zones and cultivar types suggests they might play a central role in the development of cold-induced compact morphology and cold hardening. New insights are presented on the potential temperature-driven role of peroxidases and hemicellulose in cell wall dynamics of grasses.
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Affiliation(s)
- M Lorenzo
- INTA, Unidad Integrada Balcarce, Balcarce, Buenos Aires, Argentina
| | - M L Pinedo
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata-CONICET, Mar del Plata, Buenos Aires, Argentina
| | - M A Equiza
- Department of Renewable Resources, University of Alberta, Edmonton, Canada
| | - P V Fernández
- Cátedra de Química de Biomoléculas, Departamento de Biología Aplicada y Alimentos, Facultad de Agronomía, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina
- CIHIDECAR-CONICET, Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina
- Research Member of the National Research Council of Argentina (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - M Ciancia
- Cátedra de Química de Biomoléculas, Departamento de Biología Aplicada y Alimentos, Facultad de Agronomía, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina
- CIHIDECAR-CONICET, Departamento de Química Orgánica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Autónoma de Buenos Aires, Argentina
- Research Member of the National Research Council of Argentina (CONICET), Ciudad Autónoma de Buenos Aires, Argentina
| | - D G Ganem
- Laboratorio de Fisiología Vegetal, Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Balcarce, Buenos Aires, Argentina
| | - J A Tognetti
- Laboratorio de Fisiología Vegetal, Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Balcarce, Buenos Aires, Argentina
- Comisión de Investigaciones Científicas de la Provincia de Buenos Aires (CIC), La Plata, Buenos Aires, Argentina
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Köpnick C, Grübe M, Stock J, Senula A, Mock HP, Nagel M. Changes of soluble sugars and ATP content during DMSO droplet freezing and PVS3 droplet vitrification of potato shoot tips. Cryobiology 2018; 85:79-86. [PMID: 30257179 DOI: 10.1016/j.cryobiol.2018.09.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 08/05/2018] [Accepted: 09/19/2018] [Indexed: 12/13/2022]
Abstract
The potato's great genetic diversity needs to be maintained for future agricultural applications and can be preserved at ultra-low temperatures. To decipher detailed physiological processes, the aim of the study was to analyze the regrowth in 28 gene bank accessions and to reveal metabolite changes in a subset of four accessions that showed pronounced differences after shoot tip cryopreservation using DMSO droplet freezing and PVS3 droplet vitrification. Regrowth varied in all 28 genotypes ranging from 5% ('Kagiri') to 100% ('Karakter') and was higher after PVS3 droplet vitrification (71 ± 19%) than after cryopreservation using DMSO (54 ± 17%). Sucrose, glucose, and fructose were analyzed and showed significant increases after pre-culture in combination with PVS3 or DMSO and liquid nitrogen treatment and were reduced during regeneration. In contrast, adenosine triphosphate (ATP) reached its minimum concentration after cryoprotection and liquid nitrogen treatment and recovered most quickly after PVS3 droplet vitrification. A shortening of the explant pre-culture period reduced dramatically the regrowth after PVS3 vitrification. However, correlations between the shoot tip regrowth and sugar concentration were absent and significant at a low extent with ATP (r = 0.4, P < 0.01). Interestingly, several sub-cultivations of the donor plants from the previous stock affected negatively the regrowth. In conclusion, the cryopreservation protocol, genotypes, pre-culture period and number of sub-cultures affect the regrowth ability of explants, which was best estimated by the ATP concentration after low-temperature treatment. Due to the superior performance of PVS3, the routine potato cryopreservation at the Gatersleben gene bank was changed to PVS3 droplet vitrification.
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Affiliation(s)
- Claudia Köpnick
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany
| | - Marion Grübe
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany
| | - Johanna Stock
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany
| | - Angelika Senula
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany
| | - Hans-Peter Mock
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany
| | - Manuela Nagel
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), Corrensstraße 3, 06466, Seeland, Germany.
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21
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Muchapirei CI, Valentine SL, Roden LC. Plant circadian networks and responses to the environment. FUNCTIONAL PLANT BIOLOGY : FPB 2018; 45:393-399. [PMID: 32290979 DOI: 10.1071/fp17150] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 10/26/2017] [Indexed: 06/11/2023]
Abstract
There are regular, and therefore predictable, environmental changes on Earth due to the rotation of the planet on its axis and its orbit around the sun. Thus organisms have adapted their metabolism, physiology and behaviour to minimise stresses caused by unfavourable conditions and maximise efficiency of growth. Additionally, most organisms are able to anticipate these changes and accordingly maximise metabolic efficiency and growth, because they have a complex biological time-keeping system commonly referred to as the circadian clock. Multiple pathways in plants are organised in a temporal manner through circadian clock-regulation of gene transcription and post-translational modifications. What is becoming more apparent is the bidirectional nature of interactions between the clock and stress response pathways. Until recently, the focus of many studies had been on the unidirectional, hierarchical control of biological processes by the circadian clock, and impacts on the clock in response to environmental stress had been largely ignored. Studies of interactions of the circadian clock with the environment have primarily been to understand mechanisms of entrainment. We review the evidence and implications of the reciprocal interactions between the clock and the environment.
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Affiliation(s)
- Chenjerai I Muchapirei
- Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, Cape Town, South Africa
| | - Shannon-Leigh Valentine
- Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, Cape Town, South Africa
| | - Laura C Roden
- Department of Molecular and Cell Biology, Faculty of Science, University of Cape Town, Cape Town, South Africa
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Pareek A, Khurana A, Sharma AK, Kumar R. An Overview of Signaling Regulons During Cold Stress Tolerance in Plants. Curr Genomics 2017; 18:498-511. [PMID: 29204079 PMCID: PMC5684653 DOI: 10.2174/1389202918666170228141345] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Revised: 09/23/2016] [Accepted: 10/05/2016] [Indexed: 11/22/2022] Open
Abstract
Plants, being sessile organisms, constantly withstand environmental fluctuations, including low-temperature, also referred as cold stress. Whereas cold poses serious challenges at both physiological and developmental levels to plants growing in tropical or sub-tropical regions, plants from temperate climatic regions can withstand chilling or freezing temperatures. Several cold inducible genes have already been isolated and used in transgenic approach to generate cold tolerant plants. The conventional breeding methods and marker assisted selection have helped in developing plant with improved cold tolerance, however, the development of freezing tolerant plants through cold acclimation remains an unaccomplished task. Therefore, it is essential to have a clear understanding of how low temperature sensing strategies and corresponding signal transduction act during cold acclimation process. Herein, we synthesize the available information on the molecular mechanisms underlying cold sensing and signaling with an aim that the summarized literature will help develop efficient strategies to obtain cold tolerant plants.
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Affiliation(s)
- Amit Pareek
- Department of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
| | - Ashima Khurana
- Ashima Khurana, Botany Department, Zakir Husain Delhi College, University of Delhi, New Delhi-110002, India
| | - Arun K. Sharma
- Department of Plant Molecular Biology, University of Delhi, South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi-110021, India
| | - Rahul Kumar
- Repository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad500046, India
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Arms EM, Yan Z, St.Clair DA. Differential Transcriptional Regulation in Roots of Tomato Near-Isogenic Lines in Response to Rapid-Onset Water Stress. FRONTIERS IN PLANT SCIENCE 2017; 8:166. [PMID: 28270818 PMCID: PMC5318454 DOI: 10.3389/fpls.2017.00166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 01/26/2017] [Indexed: 06/06/2023]
Abstract
Cultivated tomato (Solanum lycopersicum L.) is susceptible to abiotic stresses, including drought and chilling stress, while its wild relative (Solanum habrochaites) exhibits tolerance to many abiotic stresses. Chilling roots to 6°C induces rapid-onset water stress by impeding water movement from roots to shoots. Wild S. habrochaites responds to root chilling by closing stomata and maintaining shoot turgor, while cultivated tomato fails to close stomata and wilts. This phenotypic response (shoot turgor maintenance under root chilling) is controlled by a major QTL stm9 on chromosome 9 from S. habrochaites that was previously high-resolution mapped to a 0.32 cM region, but its effects on transcriptional regulation were unknown. Here we used paired near isogenic lines (NILs) differing only for the presence or absence of the S. habrochaites introgression containing stm9 in an otherwise S. lycopersicum background to investigate global transcriptional regulation in response to rapid-onset water stress induced by root chilling. NIL175 contains the S. habrochaites introgression and exhibits tolerance to root chilling stress, while NIL163 does not contain the introgression and is susceptible. RNA from roots of the two NILs was obtained at five time points during exposure to root chilling and mRNA-Seq performed. Differential expression analysis and hierarchical clustering of transcript levels were used to determine patterns of and changes in mRNA levels. Our results show that the transcriptional response of roots exposed to chilling stress is complex, with both overlapping and unique responses in tolerant and susceptible lines. In general, susceptible NIL 163 had a more complex transcriptional response to root chilling, while NIL175 exhibited a more targeted response to the imposed stress. Our evidence suggests that both the tolerant and susceptible NILs may be primed for response to root-chilling, with many of these response genes located on chromosome 9. Furthermore, serine/threonine kinase activity likely has an important role in the root chilling response of tolerant NIL175.
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Affiliation(s)
- Erin M. Arms
- St. Clair Lab, Plant Sciences Department, University of California DavisDavis, CA, USA
| | - Zhanghang Yan
- Korf Lab, Genome Center, University of California DavisDavis, CA, USA
| | - Dina A. St.Clair
- St. Clair Lab, Plant Sciences Department, University of California DavisDavis, CA, USA
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24
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Ginn BR. The thermodynamics of protein aggregation reactions may underpin the enhanced metabolic efficiency associated with heterosis, some balancing selection, and the evolution of ploidy levels. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2017; 126:1-21. [PMID: 28185903 DOI: 10.1016/j.pbiomolbio.2017.01.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2017] [Accepted: 01/24/2017] [Indexed: 01/04/2023]
Abstract
Identifying the physical basis of heterosis (or "hybrid vigor") has remained elusive despite over a hundred years of research on the subject. The three main theories of heterosis are dominance theory, overdominance theory, and epistasis theory. Kacser and Burns (1981) identified the molecular basis of dominance, which has greatly enhanced our understanding of its importance to heterosis. This paper aims to explain how overdominance, and some features of epistasis, can similarly emerge from the molecular dynamics of proteins. Possessing multiple alleles at a gene locus results in the synthesis of different allozymes at reduced concentrations. This in turn reduces the rate at which each allozyme forms soluble oligomers, which are toxic and must be degraded, because allozymes co-aggregate at low efficiencies. The model developed in this paper can explain how heterozygosity impacts the metabolic efficiency of an organism. It can also explain why the viabilities of some inbred lines seem to decline rapidly at high inbreeding coefficients (F > 0.5), which may provide a physical basis for truncation selection for heterozygosity. Finally, the model has implications for the ploidy level of organisms. It can explain why polyploids are frequently found in environments where severe physical stresses promote the formation of soluble oligomers. The model can also explain why complex organisms, which need to synthesize aggregation-prone proteins that contain intrinsically unstructured regions (IURs) and multiple domains because they facilitate complex protein interaction networks (PINs), tend to be diploid while haploidy tends to be restricted to relatively simple organisms.
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Affiliation(s)
- B R Ginn
- University of Georgia, GA 30602, United States.
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Shamustakimova AO, Leonova ТG, Taranov VV, de Boer AH, Babakov AV. Cold stress increases salt tolerance of the extremophytes Eutrema salsugineum (Thellungiella salsuginea) and Eutrema (Thellungiella) botschantzevii. JOURNAL OF PLANT PHYSIOLOGY 2017; 208:128-138. [PMID: 27940414 DOI: 10.1016/j.jplph.2016.10.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2016] [Revised: 10/05/2016] [Accepted: 10/06/2016] [Indexed: 06/06/2023]
Abstract
A comparative study was performed to analyze the effect of cold acclimation on improving the resistance of Arabidopsis thaliana, Eutrema salsugineum and Eutrema botschantzevii plants to salt stress. Shoot FW, sodium and potassium accumulation, metabolite content, expression of proton pump genes VAB1, VAB2,VAB3, VP2, HA3 and genes encoding ion transporters SOS1, HKT1, NHX1, NHX2, NHX5 located in the plasma membrane or tonoplast were determined just after the cold treatment and the onset of the salt stress. In the same cold-acclimated E. botschantzevii plants, the Na+ concentration after salt treatment was around 80% lower than in non-acclimated plants, whereas the K+ concentration was higher. As a result of cold acclimation, the expression of, VAB3, NHX2, NHX5 genes and of SOS1, VP2, HA3 genes was strongly enhanced in E. botschantzevii and in E. salsugineum plants correspondently. None of the 10 genes analyzed showed any expression change in A. thaliana plants after cold acclimation. Altogether, the results indicate that cold-induced adaptation to subsequent salt stress exists in the extremophytes E. botschantzevii and to a lesser extend in E. salsugineum and is absent in Arabidopsis. This phenomenon may be attributed to the increased expression of ion transporter genes during cold acclimation in the Eutrema species.
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Affiliation(s)
- A O Shamustakimova
- All_Russia Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya st., 42, Moscow 127550 Russia
| | - Т G Leonova
- All_Russia Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya st., 42, Moscow 127550 Russia
| | - V V Taranov
- All_Russia Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya st., 42, Moscow 127550 Russia
| | - A H de Boer
- Department of Structural Biology, Faculty of Earth and Life Sciences, Vrije Universiteit, Amsterdam, The Netherlands
| | - A V Babakov
- All_Russia Research Institute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences, Timiryazevskaya st., 42, Moscow 127550 Russia.
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Zhang YJ, Bucci SJ, Arias NS, Scholz FG, Hao GY, Cao KF, Goldstein G. Freezing resistance in Patagonian woody shrubs: the role of cell wall elasticity and stem vessel size. TREE PHYSIOLOGY 2016; 36:1007-1018. [PMID: 27217529 DOI: 10.1093/treephys/tpw036] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 03/22/2016] [Indexed: 06/05/2023]
Abstract
Freezing resistance through avoidance or tolerance of extracellular ice nucleation is important for plant survival in habitats with frequent subzero temperatures. However, the role of cell walls in leaf freezing resistance and the coordination between leaf and stem physiological processes under subzero temperatures are not well understood. We studied leaf and stem responses to freezing temperatures, leaf and stem supercooling, leaf bulk elastic modulus and stem xylem vessel size of six Patagonian shrub species from two sites (plateau and low elevation sites) with different elevation and minimum temperatures. Ice seeding was initiated in the stem and quickly spread to leaves, but two species from the plateau site had barriers against rapid spread of ice. Shrubs with xylem vessels smaller in diameter had greater stem supercooling capacity, i.e., ice nucleated at lower subzero temperatures. Only one species with the lowest ice nucleation temperature among all species studied exhibited freezing avoidance by substantial supercooling, while the rest were able to tolerate extracellular freezing from -11.3 to -20 °C. Leaves of species with more rigid cell walls (higher bulk elastic modulus) could survive freezing to lower subzero temperatures, suggesting that rigid cell walls potentially reduce the degree of physical injury to cell membranes during the extracellular freezing and/or thaw processes. In conclusion, our results reveal the temporal-spatial ice spreading pattern (from stem to leaves) in Patagonian shrubs, and indicate the role of xylem vessel size in determining supercooling capacity and the role of cell wall elasticity in determining leaf tolerance of extracellular ice formation.
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Affiliation(s)
- Yong-Jiang Zhang
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, China Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA
| | - Sandra J Bucci
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and Grupo de Estudios Biofísicos y Eco-fisiológicos (GEBEF), Departamento de Biología, Universidad Nacional de la Patagonia San Juan Bosco, Comodoro Rivadavia 9000, Argentina
| | - Nadia S Arias
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and Grupo de Estudios Biofísicos y Eco-fisiológicos (GEBEF), Departamento de Biología, Universidad Nacional de la Patagonia San Juan Bosco, Comodoro Rivadavia 9000, Argentina
| | - Fabian G Scholz
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) and Grupo de Estudios Biofísicos y Eco-fisiológicos (GEBEF), Departamento de Biología, Universidad Nacional de la Patagonia San Juan Bosco, Comodoro Rivadavia 9000, Argentina
| | - Guang-You Hao
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110164, China
| | - Kun-Fang Cao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, The Key Laboratory of Ministry of Education for Microbial and Plant Genetic Engineering, College of Forestry, Guangxi University, Nanning, Guangxi 530004, China
| | - Guillermo Goldstein
- Department of Biology, University of Miami, PO Box 249118, Coral Gables, FL 33124, USA Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Nuñez, Buenos Aires C1428EGA, Argentina
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Jung W, Campbell RL, Gwak Y, Kim JI, Davies PL, Jin E. New Cysteine-Rich Ice-Binding Protein Secreted from Antarctic Microalga, Chloromonas sp. PLoS One 2016; 11:e0154056. [PMID: 27097164 PMCID: PMC4838330 DOI: 10.1371/journal.pone.0154056] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Accepted: 04/07/2016] [Indexed: 11/18/2022] Open
Abstract
Many microorganisms in Antarctica survive in the cold environment there by producing ice-binding proteins (IBPs) to control the growth of ice around them. An IBP from the Antarctic freshwater microalga, Chloromonas sp., was identified and characterized. The length of the Chloromonas sp. IBP (ChloroIBP) gene was 3.2 kb with 12 exons, and the molecular weight of the protein deduced from the ChloroIBP cDNA was 34.0 kDa. Expression of the ChloroIBP gene was up- and down-regulated by freezing and warming conditions, respectively. Western blot analysis revealed that native ChloroIBP was secreted into the culture medium. This protein has fifteen cysteines and is extensively disulfide bonded as shown by in-gel mobility shifts between oxidizing and reducing conditions. The open-reading frame of ChloroIBP was cloned and over-expressed in Escherichia coli to investigate the IBP’s biochemical characteristics. Recombinant ChloroIBP produced as a fusion protein with thioredoxin was purified by affinity chromatography and formed single ice crystals of a dendritic shape with a thermal hysteresis activity of 0.4±0.02°C at a concentration of 5 mg/ml. In silico structural modeling indicated that the three-dimensional structure of ChloroIBP was that of a right-handed β-helix. Site-directed mutagenesis of ChloroIBP showed that a conserved region of six parallel T-X-T motifs on the β-2 face was the ice-binding region, as predicted from the model. In addition to disulfide bonding, hydrophobic interactions between inward-pointing residues on the β-1 and β-2 faces, in the region of ice-binding motifs, were crucial to maintaining the structural conformation of ice-binding site and the ice-binding activity of ChloroIBP.
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Affiliation(s)
- Woongsic Jung
- Department of Life Science, Hanyang University, Seoul, South Korea
| | - Robert L. Campbell
- Department of Biomedical and Molecular Sciences, Queen’s University, Kingston, Canada K7L-3N6
| | - Yunho Gwak
- Department of Life Science, Hanyang University, Seoul, South Korea
| | - Jong Im Kim
- Department of Biology, Chungnam National University, Daejeon, South Korea
| | - Peter L. Davies
- Department of Biomedical and Molecular Sciences, Queen’s University, Kingston, Canada K7L-3N6
- * E-mail: (PLD); (EJ)
| | - EonSeon Jin
- Department of Life Science, Hanyang University, Seoul, South Korea
- * E-mail: (PLD); (EJ)
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Novák A, Boldizsár Á, Ádám É, Kozma-Bognár L, Majláth I, Båga M, Tóth B, Chibbar R, Galiba G. Light-quality and temperature-dependent CBF14 gene expression modulates freezing tolerance in cereals. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:1285-95. [PMID: 26712822 DOI: 10.1093/jxb/erv526] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
UNLABELLED C-repeat binding factor 14 (CBF14) is a plant transcription factor that regulates a set of cold-induced genes, contributing to enhanced frost tolerance during cold acclimation. Many CBF genes are induced by cool temperatures and regulated by day length and light quality, which affect the amount of accumulated freezing tolerance. Here we show that a low red to far-red ratio in white light enhances CBF14 expression and increases frost tolerance at 15°C in winter Triticum aesitivum and Hordeum vulgare genotypes, but not in T. monococcum (einkorn), which has a relatively low freezing tolerance. Low red to far-red ratio enhances the expression of PHYA in all three species, but induces PHYB expression only in einkorn. Based on our results, a model is proposed to illustrate the supposed positive effect of phytochrome A and the negative influence of phytochrome B on the enhancement of freezing tolerance in cereals in response to spectral changes of incident light. KEY WORDS CBF-regulon, barley, cereals, cold acclimation, freezing tolerance, light regulation, low red/far-red ratio, phytochrome, wheat.
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Affiliation(s)
- Aliz Novák
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 2462 Martonvásár, Hungary Doctoral School of Molecular- and Nanotechnologies, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, 8200 Veszprém, Hungary
| | - Ákos Boldizsár
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 2462 Martonvásár, Hungary
| | - Éva Ádám
- Biological Research Centre, Hungarian Academy of Sciences, 6726 Szeged, Hungary
| | - László Kozma-Bognár
- Biological Research Centre, Hungarian Academy of Sciences, 6726 Szeged, Hungary
| | - Imre Majláth
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 2462 Martonvásár, Hungary
| | - Monica Båga
- Department of Plant Sciences, University of Saskatchewan, S7N 5A8 Saskatoon, Saskatchewan, Canada
| | - Balázs Tóth
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 2462 Martonvásár, Hungary Doctoral School of Molecular- and Nanotechnologies, Research Institute of Chemical and Process Engineering, Faculty of Information Technology, University of Pannonia, 8200 Veszprém, Hungary
| | - Ravindra Chibbar
- Department of Plant Sciences, University of Saskatchewan, S7N 5A8 Saskatoon, Saskatchewan, Canada
| | - Gábor Galiba
- Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, 2462 Martonvásár, Hungary Festetics Doctoral School, Department of Meteorology and Water Management, Georgikon Faculty, University of Pannonia, 8360 Keszthely, Hungary
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29
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Low Temperature Tolerance in the Perennial Sunflower Helianthus maximiliani. AMERICAN MIDLAND NATURALIST 2016. [DOI: 10.1674/amid-175-01-91-102.1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Schulz E, Tohge T, Zuther E, Fernie AR, Hincha DK. Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions. PLANT, CELL & ENVIRONMENT 2015; 38:1658-72. [PMID: 25689473 DOI: 10.1111/pce.12518] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Revised: 01/28/2015] [Accepted: 01/30/2015] [Indexed: 05/03/2023]
Abstract
In plants from temperate climates such as Arabidopsis thaliana, low, non-freezing temperatures lead to increased freezing tolerance in a process termed cold acclimation. During cold acclimation, massive changes in gene expression and in the content of primary metabolites and lipids have been observed. Here, we have analysed the influence of cold acclimation on flavonol and anthocyanin content and on the expression of genes related to flavonoid metabolism in 54 Arabidopsis accessions covering a wide range of freezing tolerance. Most flavonols and anthocyanins accumulated upon cold exposure, but the extent of accumulation varied strongly among the accessions. This was also true for most of the investigated transcripts. Correlation analyses revealed a high degree of coordination among metabolites and among transcripts, but only little correlation between metabolites and transcripts, indicating an important role of post-transcriptional regulation in flavonoid metabolism. Similarly, levels of many flavonoid biosynthesis genes were correlated with freezing tolerance after cold acclimation, but only the pool sizes of a few flavonols and anthocyanins. Collectively, our data provide evidence for an important role of flavonoid metabolism in Arabidopsis freezing tolerance and point to the importance of post-transcriptional mechanisms in the regulation of flavonoid metabolism in response to cold.
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Affiliation(s)
- Elisa Schulz
- Max Planck Institute for Molecular Plant Physiology, D-14476, Potsdam, Germany
| | - Takayuki Tohge
- Max Planck Institute for Molecular Plant Physiology, D-14476, Potsdam, Germany
| | - Ellen Zuther
- Max Planck Institute for Molecular Plant Physiology, D-14476, Potsdam, Germany
| | - Alisdair R Fernie
- Max Planck Institute for Molecular Plant Physiology, D-14476, Potsdam, Germany
| | - Dirk K Hincha
- Max Planck Institute for Molecular Plant Physiology, D-14476, Potsdam, Germany
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Jung W, Gwak Y, Davies PL, Kim HJ, Jin E. Isolation and characterization of antifreeze proteins from the antarctic marine microalga Pyramimonas gelidicola. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2014; 16:502-12. [PMID: 24609978 DOI: 10.1007/s10126-014-9567-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2012] [Accepted: 01/21/2014] [Indexed: 05/03/2023]
Abstract
Antifreeze proteins (AFPs) play an important role in the psychrophilic adaptation of polar organisms. AFPs encoded by an Antarctic chlorophyte, identified as Pyramimonas gelidicola, were isolated and characterized. Two AFP isoforms were found from cDNAs and their deduced molecular weights were estimated to be 26.4 kDa (Pg-1-AFP) and 27.1 kDa (Pg-2-AFP). Both AFP cDNAs were cloned and expressed in Escherichia coli. The purified recombinant Pg-1-rAFP and Pg-2-rAFP both showed antifreeze activity based on the measurement of thermal hysteresis (TH) and morphological changes to single ice crystals. Pg-1-rAFP shaped ice crystals into a snowflake pattern with a TH value of 0.6 ± 0.02 °C at ~15 mg/ml. Single ice crystals in Pg-2-rAFP showed a dendritic morphology with a TH value of 0.25 ± 0.02 °C at the same protein concentration. Based on in silico protein structure predictions, the three-dimensional structures of P. gelidicola AFPs match those of their homologs found in fungi and bacteria. They fold as a right-handed β-helix flanked by an α-helix. Unlike the hyperactive insect AFPs, the proposed ice-binding site on one of the flat β-helical surfaces is neither regular nor well-conserved. This might be a characteristic of AFPs used for freeze tolerance as opposed to freeze avoidance. A role for P. gelidicola AFPs in freeze tolerance is also consistent with their relatively low TH values.
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Affiliation(s)
- Woongsic Jung
- Department of Life Science, Division of Natural Sciences, Hanyang University, 133-791, Seoul, South Korea
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32
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Effect of vacuum infused cryoprotectants on the freezing tolerance of strawberry tissues. Lebensm Wiss Technol 2013. [DOI: 10.1016/j.lwt.2011.09.013] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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33
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Guo WL, Chen RG, Gong ZH, Yin YX, Li DW. Suppression Subtractive Hybridization Analysis of Genes Regulated by Application of Exogenous Abscisic Acid in Pepper Plant (Capsicum annuum L.) Leaves under Chilling Stress. PLoS One 2013; 8:e66667. [PMID: 23825555 PMCID: PMC3688960 DOI: 10.1371/journal.pone.0066667] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2012] [Accepted: 05/12/2013] [Indexed: 12/04/2022] Open
Abstract
Low temperature is one of the major factors limiting pepper (Capsicum annuum L.) production during winter and early spring in non-tropical regions. Application of exogenous abscisic acid (ABA) effectively alleviates the symptoms of chilling injury, such as wilting and formation of necrotic lesions on pepper leaves; however, the underlying molecular mechanism is not understood. The aim of this study was to identify genes that are differentially up- or downregulated in ABA-pretreated hot pepper seedlings incubated at 6°C for 48 h, using a suppression subtractive hybridization (SSH) method. A total of 235 high-quality ESTs were isolated, clustered and assembled into a collection of 73 unigenes including 18 contigs and 55 singletons. A total of 37 unigenes (50.68%) showed similarities to genes with known functions in the non-redundant database; the other 36 unigenes (49.32%) showed low similarities or unknown functions. Gene ontology analysis revealed that the 37 unigenes could be classified into nine functional categories. The expression profiles of 18 selected genes were analyzed using quantitative RT-PCR; the expression levels of 10 of these genes were at least two-fold higher in the ABA-pretreated seedlings under chilling stress than water-pretreated (control) plants under chilling stress. In contrast, the other eight genes were downregulated in ABA-pretreated seedlings under chilling stress, with expression levels that were one-third or less of the levels observed in control seedlings under chilling stress. These results suggest that ABA can positively and negatively regulate genes in pepper plants under chilling stress.
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Affiliation(s)
- Wei-Li Guo
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P. R. China
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
| | - Ru-Gang Chen
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P. R. China
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P. R. China
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
- * E-mail:
| | - Yan-Xu Yin
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P. R. China
| | - Da-Wei Li
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P. R. China
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, P. R. China
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Degenkolbe T, Giavalisco P, Zuther E, Seiwert B, Hincha DK, Willmitzer L. Differential remodeling of the lipidome during cold acclimation in natural accessions of Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2012; 72:972-82. [PMID: 23061922 DOI: 10.1111/tpj.12007] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Freezing injury is a major factor limiting the geographical distribution of plant species and the growth and yield of crop plants. Plants from temperate climates are able to increase their freezing tolerance during exposure to low but non-freezing temperatures in a process termed cold acclimation. Damage to cellular membranes is the major cause of freezing injury in plants, and membrane lipid composition is strongly modified during cold acclimation. Forward and reverse genetic approaches have been used to probe the role of specific lipid-modifying enzymes in the freezing tolerance of plants. In the present paper we describe an alternative ecological genomics approach that relies on the natural genetic variation within a species. Arabidopsis thaliana has a wide geographical range throughout the Northern Hemisphere with significant natural variation in freezing tolerance that was used for a comparative analysis of the lipidomes of 15 Arabidopsis accessions using ultra-performance liquid chromatography coupled to Fourier-transform mass spectrometry, allowing the detection of 180 lipid species. After 14 days of cold acclimation at 4°C the plants from most accessions had accumulated massive amounts of storage lipids, with most of the changes in long-chain unsaturated triacylglycerides, while the total amount of membrane lipids was only slightly changed. Nevertheless, major changes in the relative amounts of different membrane lipids were also evident. The relative abundance of several lipid species was highly correlated with the freezing tolerance of the accessions, allowing the identification of possible marker lipids for plant freezing tolerance.
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Affiliation(s)
- Thomas Degenkolbe
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
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Zuther E, Schulz E, Childs LH, Hincha DK. Clinal variation in the non-acclimated and cold-acclimated freezing tolerance of Arabidopsis thaliana accessions. PLANT, CELL & ENVIRONMENT 2012; 35:1860-78. [PMID: 22512351 DOI: 10.1111/j.1365-3040.2012.02522.x] [Citation(s) in RCA: 100] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Arabidopsis thaliana is a geographically widely spread species consisting of local accessions differing both genetically and phenotypically. These differences may constitute environmental adaptations and a latitudinal cline in freezing tolerance has been shown previously. Many plants, including Arabidopsis, exhibit increased freezing tolerance after cold exposure (cold acclimation). Here we present evidence for geographical clines (both latitudinal and longitudinal) in acclimated (ACC) and non-acclimated (NA) freezing tolerance, estimated from electrolyte leakage measurements on 54 accessions. Leaf Pro contents were not correlated with freezing tolerance, while sugar contents (Glc, Fru, Suc, Raf) were in the ACC, but not the NA state. Expression levels of 14 cold-induced genes were investigated before and after 2 weeks of cold acclimation by quantitative RT-PCR. Expression of the CBF1, 2 and 3 genes was not correlated with freezing tolerance. The expression of some CBF-regulated (COR) genes, however, was correlated specifically with ACC freezing tolerance. A tight correlation between CBF and COR gene expression was only observed under non-acclimating conditions, where CBF and COR expression were also correlated with the expression of PRR5, a component of the circadian clock. Collectively, this study sheds new light on the molecular determinants of plant-freezing tolerance and cold acclimation and their geographical dependence.
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Affiliation(s)
- Ellen Zuther
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam, Germany
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Nissinen RM, Männistö MK, van Elsas JD. Endophytic bacterial communities in three arctic plants from low arctic fell tundra are cold-adapted and host-plant specific. FEMS Microbiol Ecol 2012; 82:510-22. [PMID: 22861658 DOI: 10.1111/j.1574-6941.2012.01464.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2012] [Revised: 07/16/2012] [Accepted: 07/30/2012] [Indexed: 11/27/2022] Open
Abstract
Endophytic bacteria inhabit internal plant tissues, and have been isolated from a large diversity of plants, where they form nonpathogenic relationships with their hosts. This study combines molecular and culture-dependent approaches to characterize endophytic bacterial communities of three arcto-alpine plant species (Oxyria digyna, Diapensia lapponica and Juncus trifidus) sampled in the low Arctic (69°03'N). Analyses of a 325 bacterial endophyte isolates, as well as seven clone libraries, revealed a high diversity. In particular, members of the Actinobacteria, Bacteroidetes, Firmicutes, Acidobacteria, and Proteobacteria were found. The compositions of the endophytic bacterial communities were dependent on host-plant species as well as on snow cover at sampling sites. Several bacterial genera were found to be associated tightly with specific host-plant species. In particular, Sphingomonas spp. were characteristic for D. lapponica and O. digyna, and their phylogenetic grouping corresponded to the host plant. Most of the endophyte isolates grew well and retained activity at +4 °C, and isolate as well as clone library sequences were often highly similar to sequences from bacteria from cold environments. Taken together, this study shows that arctic plants harbour a diverse community of bacterial endophytes, a portion of which seems to be tightly associated with specific plant species.
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Lee YP, Babakov A, de Boer B, Zuther E, Hincha DK. Comparison of freezing tolerance, compatible solutes and polyamines in geographically diverse collections of Thellungiella sp. and Arabidopsis thaliana accessions. BMC PLANT BIOLOGY 2012; 12:131. [PMID: 22863402 PMCID: PMC3464606 DOI: 10.1186/1471-2229-12-131] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2012] [Accepted: 07/13/2012] [Indexed: 05/05/2023]
Abstract
BACKGROUND Thellungiella has been proposed as an extremophile alternative to Arabidopsis to investigate environmental stress tolerance. However, Arabidopsis accessions show large natural variation in their freezing tolerance and here the tolerance ranges of collections of accessions in the two species were compared. RESULTS Leaf freezing tolerance of 16 Thellungiella accessions was assessed with an electrolyte leakage assay before and after 14 days of cold acclimation at 4°C. Soluble sugars (glucose, fructose, sucrose, raffinose) and free polyamines (putrescine, spermidine, spermine) were quantified by HPLC, proline photometrically. The ranges in nonacclimated freezing tolerance completely overlapped between Arabidopsis and Thellungiella. After cold acclimation, some Thellungiella accessions were more freezing tolerant than any Arabidopsis accessions. Acclimated freezing tolerance was correlated with sucrose levels in both species, but raffinose accumulation was lower in Thellungiella and only correlated with freezing tolerance in Arabidopsis. The reverse was true for leaf proline contents. Polyamine levels were generally similar between the species. Only spermine content was higher in nonacclimated Thellungiella plants, but decreased during acclimation and was negatively correlated with freezing tolerance. CONCLUSION Thellungiella is not an extremophile with regard to freezing tolerance, but some accessions significantly expand the range present in Arabidopsis. The metabolite data indicate different metabolic adaptation strategies between the species.
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Affiliation(s)
- Yang Ping Lee
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam, D-14476, Germany
| | - Alexei Babakov
- All-Russia Research Institute of Agricultural Biotechnology RAAS, Timiryazevskaya St. 42, Moscow, 127550, Russia
| | - Bert de Boer
- Department of Structural Biology, Vrije Universiteit Amsterdam, De Boelelaan 1085-1087, Amsterdam, 1081 HV, The Netherlands
| | - Ellen Zuther
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam, D-14476, Germany
| | - Dirk K Hincha
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, Potsdam, D-14476, Germany
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Theocharis A, Clément C, Barka EA. Physiological and molecular changes in plants grown at low temperatures. PLANTA 2012; 235:1091-105. [PMID: 22526498 DOI: 10.1007/s00425-012-1641-y] [Citation(s) in RCA: 245] [Impact Index Per Article: 20.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Accepted: 03/13/2012] [Indexed: 05/18/2023]
Abstract
Apart from water availability, low temperature is the most important environmental factor limiting the productivity and geographical distribution of plants across the world. To cope with cold stress, plant species have evolved several physiological and molecular adaptations to maximize cold tolerance by adjusting their metabolism. The regulation of some gene products represents an additional mechanism of cold tolerance. A consequence of these mechanisms is that plants are able to survive exposure to low temperature via a process known as cold acclimation. In this review, we briefly summarize recent progress in research and hypotheses on how sensitive plants perceive cold. We also explore how this perception is translated into changes within plants following exposure to low temperatures. Particular emphasis is placed on physiological parameters as well as transcriptional, post-transcriptional and post-translational regulation of cold-induced gene products that occur after exposure to low temperatures, leading to cold acclimation.
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Affiliation(s)
- Andreas Theocharis
- Laboratoire de Stress, Défense et Reproduction des Plantes, URVVC, UPRES EA 2069, Université de Reims Champagne-Ardenne, BP 1039, 51687 Reims Cedex 2, France
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Grene R, Klumas C, Suren H, Yang K, Collakova E, Myers E, Heath LS, Holliday JA. Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis). FRONTIERS IN PLANT SCIENCE 2012; 3:241. [PMID: 23112803 PMCID: PMC3482696 DOI: 10.3389/fpls.2012.00241] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2012] [Accepted: 10/10/2012] [Indexed: 05/18/2023]
Abstract
Microarray gene expression profiling is a powerful technique to understand complex developmental processes, but making biologically meaningful inferences from such studies has always been challenging. We previously reported a microarray study of the freezing acclimation period in Sitka spruce (Picea sitchensis) in which a large number of candidate genes for climatic adaptation were identified. In the current paper, we apply additional systems biology tools to these data to further probe changes in the levels of genes and metabolites and activities of associated pathways that regulate this complex developmental transition. One aspect of this adaptive process that is not well understood is the role of the cell wall. Our data suggest coordinated metabolic and signaling responses leading to cell wall remodeling. Co-expression of genes encoding proteins associated with biosynthesis of structural and non-structural cell wall carbohydrates was observed, which may be regulated by ethylene signaling components. At the same time, numerous genes, whose products are putatively localized to the endomembrane system and involved in both the synthesis and trafficking of cell wall carbohydrates, were up-regulated. Taken together, these results suggest a link between ethylene signaling and biosynthesis, and targeting of cell wall related gene products during the period of winter hardening. Automated Layout Pipeline for Inferred NEtworks (ALPINE), an in-house plugin for the Cytoscape visualization environment that utilizes the existing GeneMANIA and Mosaic plugins, together with the use of visualization tools, provided images of proposed signaling processes that became active over the time course of winter hardening, particularly at later time points in the process. The resulting visualizations have the potential to reveal novel, hypothesis-generating, gene association patterns in the context of targeted subcellular location.
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Affiliation(s)
- Ruth Grene
- Department of Plant Pathology, Physiology, and Weed Science, Virginia TechBlacksburg, VA, USA
- *Correspondence: Ruth Grene, Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, VA 24061, USA. e-mail:
| | - Curtis Klumas
- Department of Plant Pathology, Physiology, and Weed Science, Virginia TechBlacksburg, VA, USA
- Genetics, Bioinformatics and Computational Biology Program, Virginia TechBlacksburg, VA, USA
| | - Haktan Suren
- Genetics, Bioinformatics and Computational Biology Program, Virginia TechBlacksburg, VA, USA
- Department of Forest Resources and Environmental Conservation, Virginia TechBlacksburg, VA, USA
| | - Kuan Yang
- Department of Plant Pathology, Physiology, and Weed Science, Virginia TechBlacksburg, VA, USA
- Genetics, Bioinformatics and Computational Biology Program, Virginia TechBlacksburg, VA, USA
| | - Eva Collakova
- Department of Plant Pathology, Physiology, and Weed Science, Virginia TechBlacksburg, VA, USA
| | - Elijah Myers
- Genetics, Bioinformatics and Computational Biology Program, Virginia TechBlacksburg, VA, USA
- Department of Computer Science, Virginia TechBlacksburg, VA, USA
| | - Lenwood S. Heath
- Department of Computer Science, Virginia TechBlacksburg, VA, USA
| | - Jason A. Holliday
- Department of Forest Resources and Environmental Conservation, Virginia TechBlacksburg, VA, USA
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Ecosystem, Location, and Climate Effects on Foliar Secondary Metabolites of Lodgepole Pine Populations from Central British Columbia. J Chem Ecol 2011; 37:607-21. [DOI: 10.1007/s10886-011-9958-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2010] [Revised: 03/18/2011] [Accepted: 04/19/2011] [Indexed: 11/25/2022]
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41
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Wang C, Zhang L, Chen W. Plant cortical microtubules are putative sensors under abiotic stresses. BIOCHEMISTRY (MOSCOW) 2011; 76:320-6. [DOI: 10.1134/s0006297911030047] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Mishra A, Mishra KB, Höermiller II, Heyer AG, Nedbal L. Chlorophyll fluorescence emission as a reporter on cold tolerance in Arabidopsis thaliana accessions. PLANT SIGNALING & BEHAVIOR 2011; 6:301-10. [PMID: 21427532 PMCID: PMC3121992 DOI: 10.4161/psb.6.2.15278] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2011] [Revised: 02/24/2011] [Accepted: 02/24/2011] [Indexed: 05/20/2023]
Abstract
Non-invasive, high-throughput screening methods are valuable tools in breeding for abiotic stress tolerance in plants. Optical signals such as chlorophyll fluorescence emission can be instrumental in developing new screening techniques. In order to examine the potential of chlorophyll fluorescence to reveal plant tolerance to low temperatures, we used a collection of nine Arabidopsis thaliana accessions and compared their fluorescence features with cold tolerance quantified by the well established electrolyte leakage method on detached leaves. We found that, during progressive cooling, the minimal chlorophyll fluorescence emission rose strongly and that this rise was highly dependent on the cold tolerance of the accessions. Maximum quantum yield of PSII photochemistry and steady state fluorescence normalized to minimal fluorescence were also highly correlated to the cold tolerance measured by the electrolyte leakage method. In order to further increase the capacity of the fluorescence detection to reveal the low temperature tolerance, we applied combinatorial imaging that employs plant classification based on multiple fluorescence features. We found that this method, by including the resolving power of several fluorescence features, can be well employed to detect cold tolerance already at mild sub-zero temperatures. Therefore, there is no need to freeze the screened plants to the largely damaging temperatures of around -15°C. This, together with the method's easy applicability, represents a major advantage of the fluorescence technique over the conventional electrolyte leakage method.
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Affiliation(s)
- Anamika Mishra
- Institute of Physical Biology, University of South Bohemia; Nové Hrady, Czech Republic
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43
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Gurney KM, Schaberg PG, Hawley GJ, Shane JB. Inadequate Cold Tolerance as a Possible Limitation to American Chestnut Restoration in the Northeastern United States. Restor Ecol 2011. [DOI: 10.1111/j.1526-100x.2009.00544.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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44
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Gery C, Zuther E, Schulz E, Legoupi J, Chauveau A, McKhann H, Hincha DK, Téoulé E. Natural variation in the freezing tolerance of Arabidopsis thaliana: effects of RNAi-induced CBF depletion and QTL localisation vary among accessions. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011; 180:12-23. [PMID: 21421342 DOI: 10.1016/j.plantsci.2010.07.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2010] [Revised: 07/13/2010] [Accepted: 07/17/2010] [Indexed: 05/20/2023]
Abstract
Plants from temperate regions are able to withstand freezing temperatures and to increase their freezing tolerance during exposure to low, but non-freezing, temperatures through a process known as cold acclimation. Key regulatory proteins in this process are the cold-induced CBF1, 2 and 3 transcription factors which control many cold regulated genes. Although much work has focused on this signal transduction pathway, the details of its regulation and of its quantitative contribution to cold acclimation are still unclear. Here, we have used the large natural variation present in the 48 accessions of the Versailles core collection of Arabidopsis thaliana to further elucidate the function of the CBF transcription factors. CBF gene expression studies showed that the freezing sensitive accessions had mostly low expression levels 2h after transfer of plants to 5°C, while the most tolerant accessions showed a wide range of CBF expression levels. To investigate the quantitative contribution of CBF expression to plant freezing tolerance and low temperature growth performance, RNAi lines targeting all three CBF genes were produced in eight different accessions. We observed striking differences between different accessions in the effects that reduced CBF expression had on freezing tolerance, while effects on growth were generally too small to draw firm conclusions. Analysis of CBF expression indicated a tight co-regulation between CBF1 and CBF3, while the relationship between the expression levels of CBF2 and CBF1 or CBF3 strongly depended on the genetic background of the RNAi lines. In agreement with the observed differences between the different accessions, QTL analyses with two different RIL populations indicated that QTL localisation varies strongly between populations. Collectively, these results show that both the regulation of the CBF genes and their relative contribution to freezing tolerance strongly depend on the accession studied. In addition, natural variation is suggested to be an interesting source of novel regulatory pathways and genes that may be useful in the future for improving plant freezing tolerance.
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Affiliation(s)
- Carine Gery
- Institut Jean-Pierre Bourgin (IJPB), UMR1318 INRA-AgroParisTech, Bât. 7, INRA Centre de Versailles-Grignon, Route de Saint Cyr, 78026 Versailles Cedex, France
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45
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Soares-Cordeiro AS, Driscoll SP, Arrabaça MC, Foyer CH. Dorsoventral variations in dark chilling effects on photosynthesis and stomatal function in Paspalum dilatatum leaves. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:687-99. [PMID: 21030386 PMCID: PMC3003811 DOI: 10.1093/jxb/erq302] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2010] [Revised: 08/12/2010] [Accepted: 09/06/2010] [Indexed: 05/24/2023]
Abstract
The effects of dark chilling on the leaf-side-specific regulation of photosynthesis were characterized in the C(4) grass Paspalum dilatatum. CO(2)- and light-response curves for photosynthesis and associated parameters were measured on whole leaves and on each leaf side independently under adaxial and abaxial illumination before and after plants were exposed to dark chilling for one or two consecutive nights. The stomata closed on the adaxial sides of the leaves under abaxial illumination and no CO(2) uptake could be detected on this surface. However, high rates of whole leaf photosynthesis were still observed because CO(2) assimilation rates were increased on the abaxial sides of the leaves under abaxial illumination. Under adaxial illumination both leaf surfaces contributed to the inhibition of whole leaf photosynthesis observed after one night of chilling. After two nights of chilling photosynthesis remained inhibited on the abaxial side of the leaf but the adaxial side had recovered, an effect related to increased maximal ribulose-1,5-bisphosphate carboxylation rates (V(cmax)) and enhanced maximal electron transport rates (J(max)). Under abaxial illumination, whole leaf photosynthesis was decreased only after the second night of chilling. The chilling-dependent inhibition of photosynthesis was located largely on the abaxial side of the leaf and was related to decreased V(cmax) and J(max), but not to the maximal phosphoenolpyruvate carboxylase carboxylation rate (V(pmax)). Each side of the leaf therefore exhibits a unique sensitivity to stress and recovery. Side-specific responses to stress are related to differences in the control of enzyme and photosynthetic electron transport activities.
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Affiliation(s)
- Ana Sofia Soares-Cordeiro
- Centro de Engenharia Biológica e Departamento de Biologia Vegetal, Faculdade de Ciências da Universidade de Lisboa, Campo Grande 1749-016 Lisboa, Portugal
| | - Simon P. Driscoll
- Centre of Plant Science, Research Institute of Integrative and Comparative Biology, Faculty of Biological Science, University of Leeds, Leeds LS2 9JT, UK
| | - Maria Celeste Arrabaça
- Centro de Engenharia Biológica e Departamento de Biologia Vegetal, Faculdade de Ciências da Universidade de Lisboa, Campo Grande 1749-016 Lisboa, Portugal
| | - Christine H. Foyer
- Centre of Plant Science, Research Institute of Integrative and Comparative Biology, Faculty of Biological Science, University of Leeds, Leeds LS2 9JT, UK
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Medina J, Catalá R, Salinas J. The CBFs: three arabidopsis transcription factors to cold acclimate. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011; 180:3-11. [PMID: 21421341 DOI: 10.1016/j.plantsci.2010.06.019] [Citation(s) in RCA: 151] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2010] [Revised: 06/25/2010] [Accepted: 06/30/2010] [Indexed: 05/02/2023]
Abstract
Low temperature is one of the adverse environmental factors that most affects plant growth and development. Temperate plants have evolved the capacity to acquire chilling and freezing tolerance after being exposed to low-nonfreezing temperatures. This adaptive response, named cold acclimation, involves many physiological and biochemical changes that mainly rely on reprogramming gene expression. Currently, the best documented genetic pathway leading to gene induction under low temperature conditions is the one mediated by the Arabidopsis C-repeat/dehydration-responsive element binding factors (CBFs), a small family of three transcriptional activators (CBF1-3) that bind to the C-repeat/dehydration-responsive element, which is present in the promoters of many cold-responsive genes, and induce transcription. The CBF genes are themselves induced by cold. Different evidences indicate that the CBF transcriptional network plays a critical role in cold acclimation in Arabidopsis. In this review, recent advances on the regulation and function of CBF factors are provided and discussed.
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Affiliation(s)
- Joaquín Medina
- Departamento de Biotecnología INIA, Centro de Biotecnología y Genómica de Plantas, Campus de Montegancedo, 28223 Madrid, Spain
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47
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Arabidopsis thaliana as a model organism for plant proteome research. J Proteomics 2010; 73:2239-48. [DOI: 10.1016/j.jprot.2010.07.012] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2010] [Revised: 07/26/2010] [Accepted: 07/28/2010] [Indexed: 12/17/2022]
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48
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Hoehenwarter W, Chen Y, Recuenco-Munoz L, Wienkoop S, Weckwerth W. Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics. Amino Acids 2010; 41:329-41. [PMID: 20602127 DOI: 10.1007/s00726-010-0669-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2010] [Accepted: 06/16/2010] [Indexed: 12/16/2022]
Abstract
Covalent post-translational modification of proteins is the primary modulator of protein function in the cell. It greatly expands the functional potential of the proteome compared to the genome. In the past few years shotgun proteomics-based research, where the proteome is digested into peptides prior to mass spectrometric analysis has been prolific in this area. It has determined the kinetics of tens of thousands of sites of covalent modification on an equally large number of proteins under various biological conditions and uncovered a transiently active regulatory network that extends into diverse branches of cellular physiology. In this review, we discuss this work in light of the concept of protein speciation, which emphasizes the entire post-translationally modified molecule and its interactions and not just the modification site as the functional entity. Sometimes, particularly when considering complex multisite modification, all of the modified molecular species involved in the investigated condition, the protein species must be completely resolved for full understanding. We present a mathematical technique that delivers a good approximation for shotgun proteomics data.
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Affiliation(s)
- Wolfgang Hoehenwarter
- Department of Molecular Systems Biology, Faculty of Life Sciences, University of Vienna, Althanstrasse 14, 1090, Vienna, Austria.
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49
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The implications of gene heterozygosity for protein folding and protein turnover. J Theor Biol 2010; 265:554-64. [PMID: 20493885 DOI: 10.1016/j.jtbi.2010.05.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2009] [Revised: 04/11/2010] [Accepted: 05/17/2010] [Indexed: 12/14/2022]
Abstract
The offspring of closely related parents often suffer from inbreeding depression, sometimes resulting in a slower growth rate for inbred offspring relative to non-inbred offspring. Previous research has shown that some of the slower growth rate of inbred organisms can be attributed to the inbred organisms' increased levels of protein turnover. This paper attempts to show that the higher levels of protein turnover among inbred organisms can be attributed to accumulations of misfolded and aggregated proteins that require degradation by the inbred organisms' protein quality control systems. The accumulation of misfolded and aggregated proteins within inbred organisms are the result of more negative free energies of folding for proteins encoded at homozygous gene loci and higher concentrations of potentially aggregating non-native protein species within the cell. The theory presented here makes several quantitative predictions that suggest a connection between protein misfolding/aggregation and polyploidy that can be tested by future research.
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50
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Korn M, Gärtner T, Erban A, Kopka J, Selbig J, Hincha DK. Predicting Arabidopsis freezing tolerance and heterosis in freezing tolerance from metabolite composition. MOLECULAR PLANT 2010; 3:224-35. [PMID: 20026477 PMCID: PMC2807929 DOI: 10.1093/mp/ssp105] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Accepted: 11/16/2009] [Indexed: 05/18/2023]
Abstract
Heterosis, or hybrid vigor, is one of the most important tools in plant breeding and has previously been demonstrated for plant freezing tolerance. Freezing tolerance is an important trait because it can limit the geographical distribution of plants and their agricultural yield. Plants from temperate climates increase in freezing tolerance during exposure to low, non-freezing temperatures in a process termed 'cold acclimation'. Metabolite profiling has indicated a major reprogramming of plant metabolism in the cold, but it has remained unclear in previous studies which of these changes are related to freezing tolerance. In the present study, we have used metabolic profiling to discover combinations of metabolites that predict freezing tolerance and its heterosis in Arabidopsis thaliana. We identified compatible solutes and, in particular, the pathway leading to raffinose as crucial statistical predictors for freezing tolerance and its heterosis, while some TCA cycle intermediates contribute only to predicting the heterotic phenotype. This indicates coordinate links between heterosis and metabolic pathways, suggesting that a limited number of regulatory genes may determine the extent of heterosis in this complex trait. In addition, several unidentified metabolites strongly contributed to the prediction of both freezing tolerance and its heterosis and we present an exemplary analysis of one of these, identifying it as a hexose conjugate.
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Affiliation(s)
- Marina Korn
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Tanja Gärtner
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
- Abteilung Bioinformatik, Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24–25, D-14476 Potsdam, Germany
| | - Alexander Erban
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Joachim Kopka
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
| | - Joachim Selbig
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
- Abteilung Bioinformatik, Institut für Biochemie und Biologie, Universität Potsdam, Karl-Liebknecht-Str. 24–25, D-14476 Potsdam, Germany
| | - Dirk K. Hincha
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Am Mühlenberg 1, D-14476 Potsdam, Germany
- To whom correspondence should be addressed. E-mail , fax +49 331 567 8250, tel. +49 331 567 8253
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