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Tendu A, Li R, Kane Y, Nalikka B, Omondi V, Bienes KM, Berthet N, Wong G. Viromes of arthropod parasites and their hosts: The case of bats and bat ectoparasites. Acta Trop 2024; 259:107375. [PMID: 39226993 DOI: 10.1016/j.actatropica.2024.107375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 08/27/2024] [Accepted: 08/28/2024] [Indexed: 09/05/2024]
Abstract
Blood feeding ectoparasites of bats have been found to contain insect-specific and vertebrate-infecting viruses of agricultural and medical importance. While it is plausible that some of these are of bat origin, those would be sourced either from the bat exterior or their blood meal. Bats, in addition to their regular diets, consume numerous ectoparasites during grooming. All microbes on and in the ectoparasites would then be introduced into the bat gut upon ingestion of the ectoparasites. To investigate the potential impact of bat ectoparasite viromes on the gut viral microbiome of bats, we compared virus sequences from bats and their blood feeding ectoparasites collected from Yunnan Province, China. Although all the co-occurring viruses were bacteriophages, we observed that bats contained a larger set of viruses than their ectoparasites, and that the set of predicted viruses present in the bats were more diverse than those present in bat ectoparasites. Our analysis suggests that despite a heavy influx of ectoparasites into the digestive tract of bats through consumption, there are only few co-occurring/shared viruses between bats and their ectoparasites, and that these ectoparasites may not be a major driver of bat virome diversity. Our findings provide necessary preliminary data for the evaluation of bat ectoparasites as a potential source of bat infecting viruses.
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Affiliation(s)
- Alexander Tendu
- Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh 12201, Cambodia
| | - Ruiya Li
- Viral Hemorrhagic Fevers Research Unit, Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yakhouba Kane
- Viral Hemorrhagic Fevers Research Unit, Shanghai Institute of Immunity and Infection, Chinese Academy of Sciences, Shanghai 200031, China; Shanghai Public Health Clinical Center, Fudan University, Shanghai 201508, China
| | - Betty Nalikka
- Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh 12201, Cambodia
| | - Victor Omondi
- Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh 12201, Cambodia
| | - Kathrina Mae Bienes
- Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh 12201, Cambodia
| | - Nicolas Berthet
- Institut Pasteur - EPVO - Epidémiologie et Physiopathologie des Virus Oncogenes, Paris 75724, France; Institut Pasteur, Unité Environnement et Risque Infectieux, Cellule d'Intervention Biologique d'Urgence, Paris 75015, France
| | - Gary Wong
- Virology Unit, Institut Pasteur du Cambodge, Institut Pasteur International Network, Phnom Penh 12201, Cambodia; Virology Laboratory, Institut Pasteur du Laos, Vientiane, Lao PDR.
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Buigues J, Viñals A, Martínez-Recio R, Monrós JS, Sanjuán R, Cuevas JM. Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces. Microbiol Spectr 2024; 12:e0067524. [PMID: 38990026 PMCID: PMC11323972 DOI: 10.1128/spectrum.00675-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Accepted: 06/26/2024] [Indexed: 07/12/2024] Open
Abstract
Bats are natural hosts of multiple viruses, many of which have clear zoonotic potential. The search for emerging viruses has been aided by the implementation of metagenomic tools, which have also enabled the detection of unprecedented viral diversity. Currently, this search is mainly focused on RNA viruses, which are largely over-represented in databases. To compensate for this research bias, we analyzed fecal samples from 189 Spanish bats belonging to 22 different species using viral metagenomics. This allowed us to identify 52 complete or near-complete viral genomes belonging to the families Adenoviridae, Circoviridae, Genomoviridae, Papillomaviridae, Parvoviridae, Polyomaviridae and Smacoviridae. Of these, 30 could constitute new species, doubling the number of viruses currently described in Europe. These findings open the door to a more thorough analysis of bat DNA viruses and their zoonotic potential. IMPORTANCE Metagenomics has become a fundamental tool to characterize the global virosphere, allowing us not only to understand the existing viral diversity and its ecological implications but also to identify new and emerging viruses. RNA viruses have a higher zoonotic potential, but this risk is also present for some DNA virus families. In our study, we analyzed the DNA fraction of fecal samples from 22 Spanish bat species, identifying 52 complete or near-complete genomes of different viral families with zoonotic potential. This doubles the number of genomes currently described in Europe. Metagenomic data often produce partial genomes that can be difficult to analyze. Our work, however, has characterized a large number of complete genomes, thus facilitating their taxonomic classification and enabling different analyses to be carried out to evaluate their zoonotic potential. For example, recombination studies are relevant since this phenomenon could play a major role in cross-species transmission.
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Affiliation(s)
- Jaime Buigues
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València and Consejo Superior de Investigaciones Científicas, València, Spain
| | - Adrià Viñals
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, València, Spain
| | - Raquel Martínez-Recio
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València and Consejo Superior de Investigaciones Científicas, València, Spain
| | - Juan S. Monrós
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, València, Spain
| | - Rafael Sanjuán
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València and Consejo Superior de Investigaciones Científicas, València, Spain
- Department of Genetics, Universitat de València, València, Spain
| | - José M. Cuevas
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València and Consejo Superior de Investigaciones Científicas, València, Spain
- Department of Genetics, Universitat de València, València, Spain
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Fereidouni S, Keleş SJ, Schlottau K, Bagó Z, Reiter G, Milchram M, Hoffmann B. Monitoring of Astroviruses, Brno-Hantaviruses, Coronaviruses, Influenza Viruses, Bornaviruses, Morbilliviruses, Lyssaviruses and Pestiviruses in Austrian Bats. Viruses 2024; 16:1232. [PMID: 39205206 PMCID: PMC11359250 DOI: 10.3390/v16081232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 07/08/2024] [Accepted: 07/24/2024] [Indexed: 09/04/2024] Open
Abstract
Here, we report the results of a monitoring study of bat viruses in Austria to strengthen the knowledge of circulating viruses in Austrian bat populations. In this study, we analyzed 618 oropharyngeal and rectal swab samples from 309 bats and 155 pooled tissue samples from dead bats. Samples were collected from 18 different bat species from multiple locations in Austria, from November 2015 to April 2018, and examined for astroviruses, bornaviruses, coronaviruses, hantaviruses, morbilliviruses, orthomyxoviruses (influenza A/C/D viruses), pestiviruses and rhabdoviruses (lyssaviruses) using molecular techniques and sequencing. Using RT-qPCR, 36 samples revealed positive or suspicious results for astroviruses, Brno-hantaviruses, and coronaviruses in nine different bat species. Further sequencing revealed correspondent sequences in five samples. In contrast, none of the tested samples was positive for influenza viruses A/C/D, bornaviruses, morbilliviruses, lyssaviruses, or pestiviruses.
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Affiliation(s)
- Sasan Fereidouni
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, 1160 Vienna, Austria;
| | - Sinan Julian Keleş
- Research Institute of Wildlife Ecology, University of Veterinary Medicine Vienna, 1160 Vienna, Austria;
| | - Kore Schlottau
- Institute of Diagnostic Virology, Friedrich Loeffler Institut, Federal Research Institute for Animal Health, D-17493 Greifswald-Insel Riems, Germany; (K.S.); (B.H.)
| | - Zoltán Bagó
- Austrian Agency for Health and Food Safety Ltd. (AGES), Institute for Veterinary Disease Control, 2340 Mödling, Austria;
| | - Guido Reiter
- Austrian Coordination Centre for Bat Conservation and Research (KFFÖ), 4060 Leonding, Austria;
| | - Markus Milchram
- Institute of Zoology, BOKU University, 1180 Vienna, Austria;
| | - Bernd Hoffmann
- Institute of Diagnostic Virology, Friedrich Loeffler Institut, Federal Research Institute for Animal Health, D-17493 Greifswald-Insel Riems, Germany; (K.S.); (B.H.)
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Szentiványi T, Estók P. Penicillidia conspicua. Trends Parasitol 2024; 40:194-195. [PMID: 38195349 DOI: 10.1016/j.pt.2023.12.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 12/17/2023] [Accepted: 12/18/2023] [Indexed: 01/11/2024]
Affiliation(s)
- Tamara Szentiványi
- Centre for Ecological Research, Vácrátót, Hungary; Pathogen and Microbiome Institute, Flagstaff, AZ, USA.
| | - Péter Estók
- Eszterházy Károly Catholic University, Eger, Hungary
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Tendu A, Kane Y, Li R, Omondi V, Chen X, Chen Y, Mastriani E, Lan J, Hughes AC, Berthet N, Wong G. Virome characterization and identification of a putative parvovirus and poxvirus in bat ectoparasites of Yunnan Province, China. One Health 2023; 17:100641. [PMID: 38024255 PMCID: PMC10665160 DOI: 10.1016/j.onehlt.2023.100641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 10/09/2023] [Indexed: 12/01/2023] Open
Abstract
Ectoparasites found on bats are known to contain important microbes. However, the viruses hosted by these obligate parasites are understudied. This has led to the near oversight of the potential role of these ectoparasites in virus maintenance and transmission from bats to other interacting species and the environment. Here, we sampled bat ectoparasites parasitizing a diverse selection of bat species in the families Rhinolophidae, Vespertilionidae, Megadermatidae, Hipposideridae and Pteropodidae in Yunnan Province, China. We show that the ectoparasite prevalence was generally higher in male compared to female bats. Most ectoparasites were found to fall within the Nycteribiidae, Spinturnicidae and Streblidae bat ectoparasite families. We subsequently applied a non-biased sequencing of libraries prepared from the pooled ectoparasites, followed by an in-silico virus-centric analysis of the resultant reads. We show that ectoparasites hosted by the sampled families of bats are found to carry, in addition to a diverse set of phages, vertebrate and insect viruses in the families Aliusviridae, Ascoviridae, Chuviridae, Circoviridae, Flaviviridae, Hepadnaviridae, Hepeviridae, Herpesviridae, Iridoviridae, Marseilleviridae, Nairoviridae, Orthomyxoviridae, Parvoviridae, Poxviridae, Reoviridae, Retroviridae, and Rhabdoviridae. We further report a partial Parvovirus VP1/VP2 gene and partial Poxvirus ubiquitin-like gene predicted by two independent next generation sequencing data analysis pipelines. This study describes the natural virome of bat ectoparasites, providing a platform for understanding the role these ectoparasites play in the maintenance and spread of viruses to other animals.
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Affiliation(s)
- Alexander Tendu
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Yakhouba Kane
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Ruiya Li
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Victor Omondi
- University of Chinese Academy of Sciences, Beijing, China
- Centre for Microbes, Development, and Health, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Unit of Discovery and Molecular Characterization of Pathogens, CAS Key Laboratory of Molecular Virology and Immunology, Shanghai, China
| | - Xing Chen
- School of Zoology, Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel
- Landscape Ecology Group, Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China
| | - Yanhua Chen
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
- Landscape Ecology Group, Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China
| | - Emilio Mastriani
- Centre for Microbes, Development, and Health, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Unit of Discovery and Molecular Characterization of Pathogens, CAS Key Laboratory of Molecular Virology and Immunology, Shanghai, China
| | - Jiaming Lan
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
| | - Alice Catherine Hughes
- Landscape Ecology Group, Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China
- School of Biological Sciences, University of Hong Kong, Hong Kong SAR, China
| | - Nicolas Berthet
- Centre for Microbes, Development, and Health, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Unit of Discovery and Molecular Characterization of Pathogens, CAS Key Laboratory of Molecular Virology and Immunology, Shanghai, China
- Institut Pasteur, Université Paris-Cité, Unité Environnement et Risque Infectieux, Cellule d'Intervention Biologique d'Urgence, Paris, France
- Institut Pasteur - épidémiologie et physiopathologie des virus oncogenes, 25-28 Rue du Docteur Roux, 75724 Paris Cedex, France
| | - Gary Wong
- Viral Hemorrhagic Fevers Research Unit, CAS Key Laboratory of Molecular Virology and Immunology, Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai, China
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Opportunities and Limitations of Molecular Methods for Studying Bat-Associated Pathogens. Microorganisms 2022; 10:microorganisms10091875. [PMID: 36144476 PMCID: PMC9502413 DOI: 10.3390/microorganisms10091875] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Revised: 09/15/2022] [Accepted: 09/16/2022] [Indexed: 01/03/2023] Open
Abstract
Bats have been identified as reservoirs of zoonotic and potentially zoonotic pathogens. Significant progress was made in the field of molecular biology with regard to infectious diseases, especially those that infect more than one species. Molecular methods, sequencing and bioinformatics have recently become irreplaceable tools in emerging infectious diseases research and even outbreak prediction. Modern methods in the molecular biology field have shed more light on the unique relationship between bats and viruses. Here we provide readers with a concise summary of the potential and limitations of molecular methods for studying the ecology of bats and bat-related pathogens and microorganisms.
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Viral Hyperparasitism in Bat Ectoparasites: Implications for Pathogen Maintenance and Transmission. Microorganisms 2022; 10:microorganisms10061230. [PMID: 35744747 PMCID: PMC9230612 DOI: 10.3390/microorganisms10061230] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 06/10/2022] [Accepted: 06/13/2022] [Indexed: 01/01/2023] Open
Abstract
Humans continue to encroach on the habitats of wild animals, potentially bringing different species into contact that would not typically encounter each other under natural circumstances, and forcing them into stressful, suboptimal conditions. Stressors from unsustainable human land use changes are suspected to dramatically exacerbate the probability of zoonotic spillover of pathogens from their natural reservoir hosts to humans, both by increasing viral load (and shedding) and the interface between wildlife with livestock, pets and humans. Given their known role as reservoir hosts, bats continue to be investigated for their possible role as the origins of many viral outbreaks. However, the participation of bat-associated ectoparasites in the spread of potential pathogens requires further work to establish. Here, we conducted a comprehensive review of viruses, viral genes and other viral sequences obtained from bat ectoparasites from studies over the last four decades. This review summarizes research findings of the seven virus families in which these studies have been performed, including Paramyxoviridae, Reoviridae, Flaviviridae, Peribunyaviridae, Nairoviridae, Rhabdoviridae and Filoviridae. We highlight that bat ectoparasites, including dipterans and ticks, are often found to have medically important viruses and may have a role in the maintenance of these pathogens within bat populations.
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Possible Arbovirus Found in Virome of Melophagus ovinus. Viruses 2021; 13:v13122375. [PMID: 34960644 PMCID: PMC8707155 DOI: 10.3390/v13122375] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 11/23/2021] [Accepted: 11/24/2021] [Indexed: 11/22/2022] Open
Abstract
Members of the Lipopteninae subfamily are blood-sucking ectoparasites of mammals. The sheep ked (Melophagus ovinus) is a widely distributed ectoparasite of sheep. It can be found in most sheep-rearing areas and can cause skin irritation, restlessness, anemia, weight loss and skin injuries. Various bacteria and some viruses have been detected in M. ovinus; however, the virome of this ked has never been studied using modern approaches. Here, we study the virome of M. ovinus collected in the Republic of Tuva, Russia. In our research, we were able to assemble full genomes for five novel viruses, related to the Rhabdoviridae (Sigmavirus), Iflaviridae, Reoviridae and Solemoviridae families. Four viruses were found in all five of the studied pools, while one virus was found in two pools. Phylogenetically, all of the novel viruses clustered together with various recently described arthropod viruses. All the discovered viruses were tested on their ability to replicate in the mammalian porcine embryo kidney (PEK) cell line. Aksy-Durug Melophagus sigmavirus RNA was detected in the PEK cell line cultural supernate after the first, second and third passages. Such data imply that this virus might be able to replicate in mammalian cells, and thus, can be considered as a possible arbovirus.
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Pawęska JT, Jansen van Vuren P, Storm N, Markotter W, Kemp A. Vector Competence of Eucampsipoda africana (Diptera: Nycteribiidae) for Marburg Virus Transmission in Rousettus aegyptiacus (Chiroptera: Pteropodidae). Viruses 2021; 13:2226. [PMID: 34835032 PMCID: PMC8624361 DOI: 10.3390/v13112226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 10/26/2021] [Accepted: 10/28/2021] [Indexed: 12/04/2022] Open
Abstract
This study aimed to determine the vector competence of bat-associated nycteribiid flies (Eucamsipoda africana) for Marburg virus (MARV) in the Egyptian Rousette Bat (ERB), Rousettus aegyptiacus. In flies fed on subcutaneously infected ERBs and tested from 3 to 43 days post infection (dpi), MARV was detected only in those that took blood during the peak of viremia, 5-7 dpi. Seroconversion did not occur in control bats in contact with MARV-infected bats infested with bat flies up to 43 days post exposure. In flies inoculated intra-coelomically with MARV and tested on days 0-29 post inoculation, only those assayed on day 0 and day 7 after inoculation were positive by q-RT-PCR, but the virus concentration was consistent with that of the inoculum. Bats remained MARV-seronegative up to 38 days after infestation and exposure to inoculated flies. The first filial generation pupae and flies collected at different times during the experiments were all negative by q-RT-PCR. Of 1693 nycteribiid flies collected from a wild ERB colony in Mahune Cave, South Africa where the enzootic transmission of MARV occurs, only one (0.06%) tested positive for the presence of MARV RNA. Our findings seem to demonstrate that bat flies do not play a significant role in the transmission and enzootic maintenance of MARV. However, ERBs eat nycteribiid flies; thus, the mechanical transmission of the virus through the exposure of damaged mucous membranes and/or skin to flies engorged with contaminated blood cannot be ruled out.
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Affiliation(s)
- Janusz T. Pawęska
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Centre for Viral Zoonoses, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, Pretoria 0001, South Africa;
- School of Pathology, Faculty of Health Sciences, University of Witwatersrand, Johannesburg 2050, South Africa
| | - Petrus Jansen van Vuren
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Australian Centre for Disease Preparedness, CSIRO Health & Biosecurity, Geelong, VIC 3220, Australia
| | - Nadia Storm
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
- Department of Microbiology, School of Medicine, Boston University, Boston, MA 02118, USA
| | - Wanda Markotter
- Centre for Viral Zoonoses, Department of Medical Virology, Faculty of Health Sciences, University of Pretoria, Pretoria 0001, South Africa;
| | - Alan Kemp
- Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Sandringham 2131, South Africa; (P.J.v.V.); (N.S.); (A.K.)
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An Investigation of Culicoides (Diptera: Ceratopogonidae) as Potential Vectors of Medically and Veterinary Important Arboviruses in South Africa. Viruses 2021; 13:v13101978. [PMID: 34696407 PMCID: PMC8541229 DOI: 10.3390/v13101978] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 09/27/2021] [Accepted: 09/28/2021] [Indexed: 12/14/2022] Open
Abstract
Culicoides-borne viruses such as bluetongue, African horse sickness, and Schmallenberg virus cause major economic burdens due to animal outbreaks in Africa and their emergence in Europe and Asia. However, little is known about the role of Culicoides as vectors for zoonotic arboviruses. In this study, we identify both veterinary and zoonotic arboviruses in pools of Culicoides biting midges in South Africa, during 2012–2017. Midges were collected at six surveillance sites in three provinces and screened for Alphavirs, Flavivirus, Orthobunyavirus, and Phlebovirus genera; equine encephalosis virus (EEV); and Rhaboviridae, by reverse transcription polymerase chain reaction. In total, 66/331 (minimum infection rate (MIR) = 0.4) pools tested positive for one or more arbovirus. Orthobunyaviruses, including Shuni virus (MIR = 0.1) and EEV (MIR = 0.2) were more readily detected, while only 2/66 (MIR = 0.1) Middelburg virus and 4/66 unknown Rhabdoviridae viruses (MIR = 0.0) were detected. This study suggests Culicoides as potential vectors of both veterinary and zoonotic arboviruses detected in disease outbreaks in Africa, which may contribute to the emergence of these viruses to new regions.
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Virome of bat-infesting arthropods: highly divergent viruses in different vectors. J Virol 2021; 96:e0146421. [PMID: 34586860 DOI: 10.1128/jvi.01464-21] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Bats are reservoirs of important zoonotic viruses like Nipah and SARS viruses. However, whether the blood-sucking arthropods on the body surface of bats also carry these viruses, and the relationship between viruses carried by the blood-sucking arthropods and viruses carried by bats, have not been reported. This study collected 686 blood-sucking arthropods on the body surface of bats from Yunnan Province, China between 2012 and 2015, and they included wingless bat flies, bat flies, ticks, mites, and fleas. The viruses carried by these arthropods were analyzed using meta-transcriptomic approach, and 144 highly diverse positive-sense single-stranded RNA, negative-sense single-stranded RNA, and double-stranded RNA viruses were found, of which 138 were potentially new viruses. These viruses were classified into 14 different virus families or orders, including Bunyavirales, Mononegavirales, Reoviridae, and Picornavirales. Further analyses found that Bunyavirales were the most abundant virus group (84% of total virus RNA) in ticks, whereas narnaviruses were the most abundant (52-92%) in the bat flies and wingless bat flies libraries, followed by solemoviruses (1-29%) and reoviruses (0-43%). These viruses were highly structured based on the arthropod types. It is worth noting that no bat-borne zoonotic viruses were found in the virome of bat-infesting arthropod, seemly not supporting that bat surface arthropods are vectors of zoonotic viruses carried by bats. IMPORTANCE Bats are reservoir of many important viral pathogens. To evaluate whether bat-parasitic blood-sucking arthropods participate in the circulation of these important viruses, it is necessary to conduct unbiased virome studies on these arthropods. We evaluated five types of blood-sucking parasitic arthropods on the surface of bats in Yunnan, China and identified a variety of viruses, some of which had high prevalence and abundance level, although there is limited overlap in virome between distant arthropods. While most of the virome discovered here are potentially arthropod-specific viruses, we identified three possible arboviruses, including one orthobunyavirus and two vesiculoviruses (family Rhabdoviridae), suggesting bat-parasitic arthropods carry viruses with risk of spillage, which warrants further study.
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Update on Potentially Zoonotic Viruses of European Bats. Vaccines (Basel) 2021; 9:vaccines9070690. [PMID: 34201666 PMCID: PMC8310327 DOI: 10.3390/vaccines9070690] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/10/2021] [Accepted: 06/21/2021] [Indexed: 12/13/2022] Open
Abstract
Bats have been increasingly gaining attention as potential reservoir hosts of some of the most virulent viruses known. Numerous review articles summarize bats as potential reservoir hosts of human-pathogenic zoonotic viruses. For European bats, just one review article is available that we published in 2014. The present review provides an update on the earlier article and summarizes the most important viruses found in European bats and their possible implications for Public Health. We identify the research gaps and recommend monitoring of these viruses.
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Isolation of a Novel Bat Rhabdovirus with Evidence of Human Exposure in China. mBio 2021; 13:e0287521. [PMID: 35164557 PMCID: PMC8844929 DOI: 10.1128/mbio.02875-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
Bats are well-recognized reservoirs of zoonotic viruses. Several spillover events from bats to humans have been reported, causing severe epidemic or endemic diseases including severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2), SARS-CoV, Middle East respiratory syndrome-CoV (MERS-CoV), henipaviruses, and filoviruses. In this study, a novel rhabdovirus species, provisionally named Rhinolophus rhabdovirus DPuer (DPRV), was identified from the horseshoe bat (Rhinolophus affinis) in Yunnan province, China, using next-generation sequencing. DPRV shedding in the spleen, liver, lung, and intestinal contents of wild bats with high viral loads was detected by real-time quantitative PCR, indicating that DPRV has tropism for multiple host tissues. Furthermore, DPRV can replicate in vitro in multiple mammalian cell lines, including BHK-21, A549, and MA104 cells, with the highest efficiency in hamster kidney cell line BHK-21, suggesting infectivity of DPRV in these cell line-derived hosts. Ultrastructure analysis revealed a characteristic bullet-shaped morphology and tightly clustered distribution of DPRV particles in the intracellular space. DPRV replicated efficiently in suckling mouse brains and caused death of suckling mice; death rates increased with passaging of DPRV in suckling mice. Moreover, 421 serum samples were collected from individuals who lived near the bat collection site and had fever symptoms within 1 year. DPRV-specific antibodies were detected in 20 (4.75%) human serum samples by indirect immunofluorescence assay. Furthermore, 10 (2.38%) serum samples were DPRV positive according to plaque reduction neutralization assay, which revealed potential transmission of DPRV from bats to humans and highlighted the potential public health risk. Potential vector association with DPRV was not found with negative viral RNA in bloodsucking arthropods. IMPORTANCE We identified a novel rhabdovirus from the horseshoe bat (Rhinolophus thomasi) in China with probable infectivity in humans. DPRV was isolated in vitro from several mammalian cell lines, indicating wide host tropism, excluding bats, of DPRV. DPRV replicated in the brains of suckling mice, and the death rate of suckling mice increased with passaging of DPRV in vivo. Serological tests indicated the possible infectivity of DPRV in humans and the potential transmission to humans. The present findings provide preliminary evidence for the potential risk of DPRV to public health. Additional studies with active surveillance are needed to address interspecies transmission and determine the pathogenicity of DPRV in humans.
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Reeves WK, Mans BJ, Durden LA, Miller MM, Gratton EM, Laverty TM. Rickettsia hoogstraalii and a Rickettsiella from the Bat Tick Argas transgariepinus, in Namibia. J Parasitol 2021; 106:663-669. [PMID: 33079998 DOI: 10.1645/20-46] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Ectoparasites were collected from Eptesicus hottentotus, the long-tailed serotine bat, caught in Namibia as part of an ecological study. Larvae of Argas transgariepinus, a blood-feeding ectoparasite of bats in Africa, were removed from 3 of 18 bats. We present scanning electron microscope images of unengorged larvae. As with other ectoparasites, this bat tick might transmit pathogens such as Borrelia and Rickettsia to their hosts as has been reported for bat ticks in Europe and North America. We screened 3 pools (25 total) of larvae of A. transgariepinus removed from the long-tailed serotine bat Eptesicus hottentotus caught in Namibia. Two microbes of unknown pathogenicity, including Rickettsia hoogstraalii, a spotted fever group pathogen, and a Rickettsiella sp. were detected by molecular techniques.
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Affiliation(s)
- Will K Reeves
- C. P. Gillette Museum of Arthropod Diversity, Colorado State University, Fort Collins, Colorado 80523
| | - Ben J Mans
- Epidemiology, Parasites and Vectors, Agricultural Research Council-Onderstepoort Veterinary Research, Onderstepoort 0110, South Africa.,The Department of Veterinary Tropical Diseases, University of Pretoria, Pretoria, South Africa.,Department of Life and Consumer Sciences, University of South Africa, South Africa
| | - Lance A Durden
- Department of Biology, Georgia Southern University, Statesboro, Georgia 30458
| | - Myrna M Miller
- Wyoming State Veterinary Laboratory, University of Wyoming, Laramie, Wyoming 82070
| | - Elena M Gratton
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, Colorado 80523
| | - Theresa M Laverty
- Department of Fish, Wildlife, and Conservation Biology, Colorado State University, Fort Collins, Colorado 80523
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Luo DS, Li B, Shen XR, Jiang RD, Zhu Y, Wu J, Fan Y, Bourhy H, Hu B, Ge XY, Shi ZL, Dacheux L. Characterization of Novel Rhabdoviruses in Chinese Bats. Viruses 2021; 13:v13010064. [PMID: 33466539 PMCID: PMC7824899 DOI: 10.3390/v13010064] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Revised: 12/24/2020] [Accepted: 12/30/2020] [Indexed: 12/25/2022] Open
Abstract
Bats, the second largest order of mammals worldwide, harbor specific characteristics such as sustaining flight, a special immune system, unique habits, and ecological niches. In addition, they are the natural reservoirs of a variety of emerging or re-emerging zoonotic pathogens. Rhabdoviridae is one of the most diverse families of RNA viruses, which consists of 20 ecologically diverse genera, infecting plants, mammals, birds, reptiles, and fish. To date, three bat-related genera are described, named Lyssavirus, Vesiculovirus, and Ledantevirus. However, the prevalence and the distribution of these bat-related rhabdoviruses remain largely unknown, especially in China. To fill this gap, we performed a large molecular retrospective study based on the real-time reverse transcription polymerase chain reaction (RT-qPCR) detection of lyssavirus in bat samples (1044 brain and 3532 saliva samples, from 63 different bat species) originating from 21 provinces of China during 2006–2018. None of them were positive for lyssavirus, but six bat brains (0.6%) of Rhinolophus bat species, originating from Hubei and Hainan provinces, were positive for vesiculoviruses or ledanteviruses. Based on complete genomes, these viruses were phylogenetically classified into three putative new species, tentatively named Yinshui bat virus (YSBV), Taiyi bat virus (TYBV), and Qiongzhong bat virus (QZBV). These results indicate the novel rhabdoviruses circulated in different Chinese bat populations.
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Affiliation(s)
- Dong-Sheng Luo
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
- University of Chinese Academy of Sciences, Beijing 100049, China
- Institut Pasteur, Lyssavirus Epidemiology and Neuropathology Unit, 75724 Paris, France;
| | - Bei Li
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
| | - Xu-Rui Shen
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ren-Di Jiang
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yan Zhu
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
| | - Jia Wu
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
| | - Yi Fan
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hervé Bourhy
- Institut Pasteur, Lyssavirus Epidemiology and Neuropathology Unit, 75724 Paris, France;
| | - Ben Hu
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
| | - Xing-Yi Ge
- Hunan Provincial Key Laboratory of Medical Virology, College of Biology, Hunan University, Changsha 410082, China;
| | - Zheng-Li Shi
- CAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; (D.-S.L.); (B.L.); (X.-R.S.); (R.-D.J.); (Y.Z.); (J.W.); (Y.F.); (B.H.)
- University of Chinese Academy of Sciences, Beijing 100049, China
- Correspondence: (Z.-L.S.); (L.D.); Tel.: +86-02787197311 (Z.-L.S.); +33-140613303 (L.D.)
| | - Laurent Dacheux
- Institut Pasteur, Lyssavirus Epidemiology and Neuropathology Unit, 75724 Paris, France;
- Correspondence: (Z.-L.S.); (L.D.); Tel.: +86-02787197311 (Z.-L.S.); +33-140613303 (L.D.)
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Orlova MV, Smirnov DG, Vekhnik VP, Lukyanenko AM, Zabashta AV. Ectoparasites and Pathogens of Kuhl's Pipistrelle Pipistrellus kuhlii (Kuhl, 1817) (Chiroptera: Vespertilionidae): Our Own and Published Data Review. RUSSIAN JOURNAL OF BIOLOGICAL INVASIONS 2020; 11:348-362. [PMID: 33362937 PMCID: PMC7750033 DOI: 10.1134/s2075111720040104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2019] [Revised: 07/21/2020] [Accepted: 08/20/2020] [Indexed: 11/23/2022]
Abstract
Here we report the results of our own survey and literary published data on the ectoparasite fauna and pathogens of the alien bat species, the Kuhl's pipistrelle Pipistrellus kuhlii (Kuhl, 1817) (Chiroptera: Vespertilionidae). This bat is a host of 36 species of parasitic mites, ticks and insects (including accidental findings) and 13 species of pathogens (protozoa, bacteria, viruses). The flea Ischnopsyllus variabilis is re-corded on this host for the first time. We have found that outside of the host ancestral range, the core of the bat parasite fauna is significantly different due to the loss of host species-specific ectoparasites. Particularly, in Russia, only 6 species of parasitic arthropods have been recorded for Kuhl's pipistrelle and all of them are host genus-specific. At the same time, the features of ecology and occasional finds of extrinsic parasites allow to suggest that P. kuhlii has wide contacts with animals which are the reservoirs of zoonotic infec-tions, that in combination with the fact of isolation of several pathogens from this species (including two coronaviruses) points to a possible medical importance of Kuhl's pipistrelle.
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Affiliation(s)
- M. V. Orlova
- Tyumen State University, 625003 Tyumen, Russia
- Tomsk National Research State University, 634050 Tomsk, Russia
| | | | - V. P. Vekhnik
- Sprygin State Natural Biosphere Reserve, 445362 Zhigulevsk, Russia
| | | | - A. V. Zabashta
- Rostov-on-Don Anti-Plague Scientific Research Institute, 344002 Rostov-on-Don, Russia
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Szentiványi T, Markotter W, Dietrich M, Clément L, Ançay L, Brun L, Genzoni E, Kearney T, Seamark E, Estók P, Christe P, Glaizot O. Host conservation through their parasites: molecular surveillance of vector-borne microorganisms in bats using ectoparasitic bat flies. ACTA ACUST UNITED AC 2020; 27:72. [PMID: 33306024 PMCID: PMC7731914 DOI: 10.1051/parasite/2020069] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 11/23/2020] [Indexed: 01/09/2023]
Abstract
Most vertebrates host a wide variety of haematophagous parasites, which may play an important role in the transmission of vector-borne microorganisms to hosts. Surveillance is usually performed by collecting blood and/or tissue samples from vertebrate hosts. There are multiple methods to obtain samples, which can be stored for decades if properly kept. However, blood sampling is considered an invasive method and may possibly be harmful to the sampled individual. In this study, we investigated the use of ectoparasites as a tool to acquire molecular information about the presence and diversity of infectious microorganism in host populations. We tested the presence of three distinct vector-borne microorganisms in both bat blood and bat flies: Bartonella bacteria, malaria-like Polychromophilus sp. (Apicomplexa), and Trypanosoma sp. (Kinetoplastea). We detected the presence of these microorganisms both in bats and in their bat flies, with the exception of Trypanosoma sp. in South African bat flies. Additionally, we found Bartonella sp. in bat flies from one population in Spain, suggesting its presence in the host population even if not detected in bats. Bartonella and Polychromophilus infection showed the highest prevalence in both bat and bat fly populations. Single, co- and triple infections were also frequently present in both. We highlight the use of haematophagous ectoparasites to study the presence of infectious microorganism in host blood and its use as an alternative, less invasive sampling method.
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Affiliation(s)
- Tamara Szentiványi
- Museum of Zoology, 1014 Lausanne, Switzerland - Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Wanda Markotter
- Department of Medical Virology, University of Pretoria, 0001 Pretoria, South Africa - AfricanBats NPC, 0157 Pretoria, South Africa
| | - Muriel Dietrich
- UMR Processus Infectieux en Milieu Insulaire Tropical, 97490 Sainte-Clotilde, Reunion Island, France
| | - Laura Clément
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Laurie Ançay
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Loïc Brun
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Eléonore Genzoni
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Teresa Kearney
- AfricanBats NPC, 0157 Pretoria, South Africa - Ditsong National Museum of Natural History, 0001 Pretoria, South Africa - Department of Zoology and Entomology, University of Pretoria, 0083 Pretoria, South Africa
| | | | - Peter Estók
- Department of Zoology, Eszterházy Károly University, 3300 Eger, Hungary
| | - Philippe Christe
- Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
| | - Olivier Glaizot
- Museum of Zoology, 1014 Lausanne, Switzerland - Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland
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Iglesias-Caballero M, Juste J, Vázquez-Morón S, Falcon A, Aznar-Lopez C, Ibáñez C, Pozo F, Ruiz G, Berciano JM, Garin I, Aihartza J, Echevarría JE, Casas I. New Adenovirus Groups in Western Palaearctic Bats. Viruses 2018; 10:v10080443. [PMID: 30127258 PMCID: PMC6116233 DOI: 10.3390/v10080443] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 08/17/2018] [Accepted: 08/18/2018] [Indexed: 12/14/2022] Open
Abstract
In the context of long-term screening for viruses on Western Palaearctic bats, we tested for the presence of adenovirus 1392 oropharyngeal swabs and 325 stool samples taken from 27 bat species. Adenoviruses were detected in 12 species of the Vespertilionidae and the Rhinolophidae families. Fifty positive respiratory and 26 positive stool samples were studied. Phylogenetic analyses of partial hexon protein and partial DNA-dependent DNA polymerase genes indicate that all these bat adenoviruses belong to the genus Mastadenovirus but without constituting a monophyletic cluster. According to genetic identities, the new groups are distinct to the previously described Bat mastadenovirus A and B species and contribute with potentially new members. Our data support that diversity of bat mastadenovirus is host-dependent and increase the knowledge of potentially pathogenic virus from bats. Due to the active role of bats as viral reservoirs, the characterization of these viruses is relevant for Public Health.
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Affiliation(s)
- Maria Iglesias-Caballero
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
| | - Javier Juste
- Estación Biológica de Doñana, CSIC, Avda Américo Vespucio 16, 41092 Seville, Spain.
| | - Sonia Vázquez-Morón
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
- Centro de Investigación Biomédica Epidemiología y Salud Pública, CIBERESP, 28029 Madrid, Spain.
| | - Ana Falcon
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
- Consorcio Centro de Investigación Biomédica en Red (CIBER), 28029 Madrid, Spain.
| | - Carolina Aznar-Lopez
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
- Centro de Investigación Biomédica Epidemiología y Salud Pública, CIBERESP, 28029 Madrid, Spain.
| | - Carlos Ibáñez
- Estación Biológica de Doñana, CSIC, Avda Américo Vespucio 16, 41092 Seville, Spain.
| | - Francisco Pozo
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
| | - Guillermo Ruiz
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
| | - Jose M Berciano
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
| | - Inazio Garin
- Department of Zoology and Animal Cell Biology, University of the Basque Country (UPV/EHU), Leioa 48940, Basque Country, Spain.
| | - Joxerra Aihartza
- Department of Zoology and Animal Cell Biology, University of the Basque Country (UPV/EHU), Leioa 48940, Basque Country, Spain.
| | - Juan E Echevarría
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
- Centro de Investigación Biomédica Epidemiología y Salud Pública, CIBERESP, 28029 Madrid, Spain.
| | - Inmaculada Casas
- Centro Nacional de Microbiología, Instituto de Salud Carlos III, Carretera de Majadahonda-Pozuelo km 2. Majadahonda 28220, Madrid, Spain.
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Ramanantsalama RV, Andrianarimisa A, Raselimanana AP, Goodman SM. Rates of hematophagous ectoparasite consumption during grooming by an endemic Madagascar fruit bat. Parasit Vectors 2018; 11:330. [PMID: 29859123 PMCID: PMC5984742 DOI: 10.1186/s13071-018-2918-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2018] [Accepted: 05/25/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Few details are available on the consumption of ectoparasites, specifically bat flies (Diptera: Nycteribiidae and Streblidae), by their chiropteran hosts while grooming. Such details are important to document consumption rates of ectoparasites by their bat host provide details on the dynamics of host-parasite interactions. We present data on ectoparasite consumption rates for an endemic Malagasy fruit bat (Pteropodidae: Rousettus madagascariensis) occupying a cave day roost colony in northern Madagascar. Using quantified behavioral analyses, grooming and associated ingestion rates were measured from infrared videos taken in close proximity to day-roosting bats. The recorded individual bats could be visually identified to age (adult, juvenile) and sex (male, female), allowing analyses of the proportion of time these different classes allocated to consuming ectoparasites via auto-grooming (self) or allo-grooming (intraspecific) per 10 min video recording session. These figures could then be extrapolated to estimates of individual daily consumption rates. RESULTS Based on video recordings, adults spent significantly more time auto-grooming and allo-grooming than juveniles. The latter group was not observed consuming ectoparasites. Grooming rates and the average number of ectoparasites consumed per day did not differ between adult males and females. The mean extrapolated number consumed on a daily basis for individual adults was 37 ectoparasites. When these figures are overlaid on the estimated number of adult Rousettus occurring at the roost site during the dry season, the projected daily consumption rate was 57,905 ectoparasites. CONCLUSIONS The details presented here represent the first quantified data on bat consumption rates of their ectoparasites, specifically dipterans. These results provide new insights in host-parasite predation dynamics. More research is needed to explore the mechanism zoonotic diseases isolated from bat flies might be transmitted to their bat hosts, specifically those pathogens that can be communicated via an oral route.
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Affiliation(s)
- Riana V Ramanantsalama
- Mention Zoologie et Biodiversité Animale, Université d'Antananarivo, BP 906, (101), Antananarivo, Madagascar. .,Association Vahatra, BP 3972, (101), Antananarivo, Madagascar.
| | - Aristide Andrianarimisa
- Mention Zoologie et Biodiversité Animale, Université d'Antananarivo, BP 906, (101), Antananarivo, Madagascar
| | - Achille P Raselimanana
- Mention Zoologie et Biodiversité Animale, Université d'Antananarivo, BP 906, (101), Antananarivo, Madagascar.,Association Vahatra, BP 3972, (101), Antananarivo, Madagascar
| | - Steven M Goodman
- Association Vahatra, BP 3972, (101), Antananarivo, Madagascar.,Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, Illinois, 60605, USA
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Lelli D, Prosperi A, Moreno A, Chiapponi C, Gibellini AM, De Benedictis P, Leopardi S, Sozzi E, Lavazza A. Isolation of a novel Rhabdovirus from an insectivorous bat (Pipistrellus kuhlii) in Italy. Virol J 2018; 15:37. [PMID: 29454370 PMCID: PMC5816388 DOI: 10.1186/s12985-018-0949-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Accepted: 02/08/2018] [Indexed: 12/27/2022] Open
Abstract
Background Rhabdoviridae is one of the most ecologically diverse families of RNA viruses which can infect a wide range of vertebrates and invertebrates. Bats, among mammals, are pointed to harbor a significantly higher proportion of unknown or emerging viruses with zoonotic potential. Herein, we report the isolation of a novel rhabdovirus, detected in the framework of a virological survey on bats implemented in North Italy. Methods Virus isolation and identification were performed on samples of 635 bats by using cell cultures, negative staining electron microscopy and PCRs for different viruses. NGS was commonly performed on cell culture supernatants showing cytopathic effect or in case of samples resulted positive by at least one of the PCRs included in the diagnostic protocol. Results A rhabdovirus was isolated from different organs of a Pipistrellus kuhlii. Virus identification was obtained by electron microscopy and NGS sequencing. The complete genome size was 11,774 nt comprised 5 genes, encoding the canonical rhabdovirus structural proteins, and an additional transcriptional unit (U1) encoding a hypothetical small protein (157aa) (3’-N-P-M-G-U1-L-5′). The genome organization and phylogenetic analysis suggest that the new virus, named Vaprio virus (VAPV), belongs to the recently established genus Ledantevirus (subgroup B) and it is highly divergent to its closest known relative, Le Dantec virus (LDV) (human, 1965 Senegal). A specific RT-PCR amplifying a 350 bp fragment of the ORF 6 gene, encoding for L protein, was developed and used to test retrospectively a subset of 76 bats coming from the same area and period, revealing two more VAPV positive bats. Conclusions VAPV is a novel isolate of chiropteran rhabdovirus. Genome organization and phylogenetic analyses demonstrated that VAPV should be considered a novel species within the genus Ledantevirus for which viral ecology and disease associations should be investigated.
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Affiliation(s)
- Davide Lelli
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy.
| | - Alice Prosperi
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy
| | - Ana Moreno
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy
| | - Chiara Chiapponi
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy
| | - Anna Maria Gibellini
- Wildlife Rehabilitation Center WWF of Valpredina via Pioda n.1, 24060 Cenate Sopra (BG), Bergamo, Italy
| | - Paola De Benedictis
- Istituto Zooprofilattico Sperimentale delle Venezie (IZSVE), Viale dell'Università, 10 - 35020 Legnaro (PD), Padova, Italy
| | - Stefania Leopardi
- Istituto Zooprofilattico Sperimentale delle Venezie (IZSVE), Viale dell'Università, 10 - 35020 Legnaro (PD), Padova, Italy
| | - Enrica Sozzi
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy
| | - Antonio Lavazza
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna (IZSLER), Via Bianchi 9 -, 25124, Brescia, Italy
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Goldberg TL, Bennett AJ, Kityo R, Kuhn JH, Chapman CA. Kanyawara Virus: A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies Infesting Previously Unknown Pteropodid Bats in Uganda. Sci Rep 2017; 7:5287. [PMID: 28706276 PMCID: PMC5509700 DOI: 10.1038/s41598-017-05236-w] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 05/25/2017] [Indexed: 12/21/2022] Open
Abstract
Bats are natural reservoir hosts of highly virulent pathogens such as Marburg virus, Nipah virus, and SARS coronavirus. However, little is known about the role of bat ectoparasites in transmitting and maintaining such viruses. The intricate relationship between bats and their ectoparasites suggests that ectoparasites might serve as viral vectors, but evidence to date is scant. Bat flies, in particular, are highly specialized obligate hematophagous ectoparasites that incidentally bite humans. Using next-generation sequencing, we discovered a novel ledantevirus (mononegaviral family Rhabdoviridae, genus Ledantevirus) in nycteribiid bat flies infesting pteropodid bats in western Uganda. Mitochondrial DNA analyses revealed that both the bat flies and their bat hosts belong to putative new species. The coding-complete genome of the new virus, named Kanyawara virus (KYAV), is only distantly related to that of its closest known relative, Mount Elgon bat virus, and was found at high titers in bat flies but not in blood or on mucosal surfaces of host bats. Viral genome analysis indicates unusually low CpG dinucleotide depletion in KYAV compared to other ledanteviruses and rhabdovirus groups, with KYAV displaying values similar to rhabdoviruses of arthropods. Our findings highlight the possibility of a yet-to-be-discovered diversity of potentially pathogenic viruses in bat ectoparasites.
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Affiliation(s)
- Tony L Goldberg
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.
- Global Health Institute, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA.
- Department of Zoology, Makerere University, Kampala, Uganda.
| | - Andrew J Bennett
- Department of Pathobiological Sciences, University of Wisconsin-Madison, Madison, Wisconsin, 53706, USA
| | - Robert Kityo
- Department of Zoology, Makerere University, Kampala, Uganda
| | - Jens H Kuhn
- Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, Maryland, 21702, USA
| | - Colin A Chapman
- Department of Zoology, Makerere University, Kampala, Uganda
- Department of Anthropology and School of Environment, McGill University, Montreal, Quebec, H3A 2T7, Canada
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22
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Gubala A, Walsh S, McAllister J, Weir R, Davis S, Melville L, Mitchell I, Bulach D, Gauci P, Skvortsov A, Boyle D. Identification of very small open reading frames in the genomes of Holmes Jungle virus, Ord River virus, and Wongabel virus of the genus Hapavirus, family Rhabdoviridae. Evol Bioinform Online 2017; 13:1176934317713484. [PMID: 28747815 PMCID: PMC5510769 DOI: 10.1177/1176934317713484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Accepted: 05/05/2017] [Indexed: 12/11/2022] Open
Abstract
Viruses of the family Rhabdoviridae infect a broad range of hosts from a variety of ecological and geographical niches, including vertebrates, arthropods, and plants. The arthropod-transmitted members of this family display considerable genetic diversity and remarkable genomic flexibility that enable coding for various accessory proteins in different locations of the genome. Here, we describe the genome of Holmes Jungle virus, isolated from Culex annulirostris mosquitoes collected in northern Australia, and make detailed comparisons with the closely related Ord River and Wongabel viruses, with a focus on identifying very small open reading frames (smORFs) in their genomes. This is the first systematic prediction of smORFs in rhabdoviruses, emphasising the intricacy of the rhabdovirus genome and the knowledge gaps. We speculate that these smORFs may be of importance to the life cycle of the virus in the arthropod vector.
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Affiliation(s)
- Aneta Gubala
- Land Division, Defence Science and Technology Group, Fishermans Bend, VIC, Australia
| | - Susan Walsh
- Berrimah Veterinary Laboratories, Department of Primary Industry and Fisheries, Northern Territory Government, Berrimah, NT, Australia
| | - Jane McAllister
- Land Division, Defence Science and Technology Group, Fishermans Bend, VIC, Australia
| | - Richard Weir
- Berrimah Veterinary Laboratories, Department of Primary Industry and Fisheries, Northern Territory Government, Berrimah, NT, Australia
| | - Steven Davis
- Berrimah Veterinary Laboratories, Department of Primary Industry and Fisheries, Northern Territory Government, Berrimah, NT, Australia
| | - Lorna Melville
- Berrimah Veterinary Laboratories, Department of Primary Industry and Fisheries, Northern Territory Government, Berrimah, NT, Australia
| | - Ian Mitchell
- Land Division, Defence Science and Technology Group, Fishermans Bend, VIC, Australia
| | - Dieter Bulach
- Australian Animal Health Laboratory, Commonwealth Scientific and Industrial Research Organisation, Geelong, VIC, Australia
| | - Penny Gauci
- Land Division, Defence Science and Technology Group, Fishermans Bend, VIC, Australia
| | - Alex Skvortsov
- Land Division, Defence Science and Technology Group, Fishermans Bend, VIC, Australia
| | - David Boyle
- Australian Animal Health Laboratory, Commonwealth Scientific and Industrial Research Organisation, Geelong, VIC, Australia
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23
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Feng Y, Li Y, Fu S, Li X, Song J, Zhang H, Yang W, Zhang Y, Pan H, Liang G. Isolation of Kaeng Khoi virus (KKV) from Eucampsipoda sundaica bat flies in China. Virus Res 2017; 238:94-100. [PMID: 28606385 DOI: 10.1016/j.virusres.2017.06.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Revised: 05/31/2017] [Accepted: 06/07/2017] [Indexed: 10/19/2022]
Abstract
A virus strain (WDBC1210) was isolated from specimens of bat flies (Eucampsipoda sundaica) associated with Leschenault's Rousette (Rousettus leschenaultii) in the China-Myanmar border area of Yunnan Province, China. Both BHK-21 and VeroE6 cells infected with WDBC1210 showed evident cytopathic effects (CPE), and the highest propagation titer was 1×105.6. The virus particles were spherical, 70nm in diameter. Virus plaques could be observed in BHK-21 cells. The whole genome of WDBC1210 contained three RNA segments: the small gene (S), 975 nucleotides long; the medium gene (M), 4568 nucleotides long; and the large gene (L), 6866 nucleotides long. The nucleotide homologies of the S, M, and L genes between WDBC1210 and the original isolate of Kaeng Khoi virus (KKV; PSC-19 strain) were 96.9%, 94.1%, and 95.2%, respectively. Phylogenetic analyses based on the S, M, and L segments indicated that WDBC1210 belongs within the same clade as the KKV strain PSC-19, a member of the Bunyaviridae family. This is the first report on the isolation of KKV from bat flies (Eucampsipoda sundaica) and from an inland area, nearly 2000km north from the original isolation site of KKV in Thailand, suggesting that KKV virus not only has a diverse set of vectors, but also a wide geographic distribution.
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Affiliation(s)
- Yun Feng
- Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China.
| | - Yuanyuan Li
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Shihong Fu
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Xiaolong Li
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Jingdong Song
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China
| | - Hailin Zhang
- Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
| | - Weihong Yang
- Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
| | - Yuzhen Zhang
- Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
| | - Hong Pan
- Yunnan Institute of Endemic Diseases Control and Prevention, Dali, China
| | - Guodong Liang
- State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Hangzhou, China.
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24
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Simo Tchetgna HD, Nakoune E, Selekon B, Gessain A, Manuguerra JC, Kazanji M, Berthet N. Molecular Characterization of the Kamese Virus, an Unassigned Rhabdovirus, Isolated from Culex pruina in the Central African Republic. Vector Borne Zoonotic Dis 2017; 17:447-451. [PMID: 28350284 DOI: 10.1089/vbz.2016.2068] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Rhabdoviridae is one of the most diversified families of RNA viruses whose members infect a wide range of plants, animals, and arthropods. The members of this family are classified into 13 genera and >150 unassigned viruses. Here, we sequenced the complete genome of a rhabdovirus belonging to the Hart Park serogroup, the Kamese virus (KAMV), isolated in 1977 from Culex pruina in the Central African Republic. The genomic sequence showed an organization typical of rhabdoviruses with additional genes in the P-M and G-L intergenic regions, as already reported for the Hart Park serogroup. Our Kamese strain (ArB9074) had 98% and 78.8% nucleotide sequence similarity with the prototypes of the KAMV and Mossuril virus isolated in Uganda and Mozambique in two different Culex species, respectively. Moreover, the protein sequences had 98-100% amino acid similarity with the prototype of the KAMV, except for an additional gene (U3) that showed a divergence of 6%. These molecular data show that our strain of the KAMV is genetically close to the Culex annuliorus strain that was circulating in Uganda in 1967. However, this study suggests the need to improve our knowledge of the KAMV to better understand its behavior, its life cycle, and its potential reservoirs.
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Affiliation(s)
| | - Emmanuel Nakoune
- 2 Virology Department, Institut Pasteur de Bangui , Bangui, Central African Republic
| | - Benjamin Selekon
- 2 Virology Department, Institut Pasteur de Bangui , Bangui, Central African Republic
| | - Antoine Gessain
- 3 Epidemiology and Physiopathology of Oncogenic Viruses, Institut Pasteur , Paris, France .,4 Centre National de Recherche Scientifique (CNRS) UMR3569 , Paris, France
| | - Jean-Claude Manuguerra
- 5 Unité Environnement et Risques Infectieux, Cellule d'Intervention Biologique d'Urgence, Institut Pasteur , Paris, France
| | - Mirdad Kazanji
- 2 Virology Department, Institut Pasteur de Bangui , Bangui, Central African Republic
| | - Nicolas Berthet
- 1 Centre International de Recherches Médicales de Franceville (CIRMF) , Franceville, Gabon .,4 Centre National de Recherche Scientifique (CNRS) UMR3569 , Paris, France .,5 Unité Environnement et Risques Infectieux, Cellule d'Intervention Biologique d'Urgence, Institut Pasteur , Paris, France
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25
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Reeves WK, Beck J, Orlova MV, Daly JL, Pippin K, Revan F, Loftis AD. Ecology of Bats, Their Ectoparasites, and Associated Pathogens on Saint Kitts Island. JOURNAL OF MEDICAL ENTOMOLOGY 2016; 53:1218-1225. [PMID: 27282816 DOI: 10.1093/jme/tjw078] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Accepted: 05/03/2016] [Indexed: 06/06/2023]
Abstract
Ectoparasites of bats and bat-associated pathogens are poorly studied in the Lesser Antilles Islands. We report on an 11-mo field study on Saint Kitts Island of bat populations, their associated ectoparasites, and pathogens. We report on five ectoparasite species, including four Streblidae (Diptera) and a Spinturnicidae (Acari). Several genotypes of unnamed Bartonella were isolated from bats and ectoparasites. Microfilaria of an undetermined Litomosoides spp. were detected in blood from Artibeus jamaicensis Leach (Chiroptera: Phyllostomidae) (and associated ectoparasites: Trichobius intermedius Peterson and Hurka (Diptera: Streblidae) and Periglischrus iheringi Oudemans (Acari: Spinturnicidae)). In addition, an Ehrlichia sp. and Rickettsia africae were detected in the blood of several bat species. Our study is one of the first surveys of ectoparasite-borne pathogens in wild mammals from St. Kitts.
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Affiliation(s)
- Will K Reeves
- USASAM/PHR, 2510 5th St., Wright-Patterson Air Force Base, US Air Force, Dayton, OH
| | - Jason Beck
- Idaho Department of Fish and Game, 1345 Barton Rd., Pocatello, ID 83204
| | - Maria V Orlova
- National Research Tomsk State University, 36, Lenina str., Tomsk 634050, Russia
| | - Jennifer L Daly
- Ross University School of Veterinary Medicine, P O Box 334, Basseterre, Saint Kitts and Nevis (; ; ; )
| | - Kristi Pippin
- Ross University School of Veterinary Medicine, P O Box 334, Basseterre, Saint Kitts and Nevis (; ; ; )
| | - Floyd Revan
- Ross University School of Veterinary Medicine, P O Box 334, Basseterre, Saint Kitts and Nevis (; ; ; )
| | - Amanda D Loftis
- Ross University School of Veterinary Medicine, P O Box 334, Basseterre, Saint Kitts and Nevis (; ; ; )
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26
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Isolation of a Novel Fusogenic Orthoreovirus from Eucampsipoda africana Bat Flies in South Africa. Viruses 2016; 8:65. [PMID: 27011199 PMCID: PMC4810255 DOI: 10.3390/v8030065] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Revised: 01/26/2016] [Accepted: 02/23/2016] [Indexed: 12/29/2022] Open
Abstract
We report on the isolation of a novel fusogenic orthoreovirus from bat flies (Eucampsipoda africana) associated with Egyptian fruit bats (Rousettus aegyptiacus) collected in South Africa. Complete sequences of the ten dsRNA genome segments of the virus, tentatively named Mahlapitsi virus (MAHLV), were determined. Phylogenetic analysis places this virus into a distinct clade with Baboon orthoreovirus, Bush viper reovirus and the bat-associated Broome virus. All genome segments of MAHLV contain a 5' terminal sequence (5'-GGUCA) that is unique to all currently described viruses of the genus. The smallest genome segment is bicistronic encoding for a 14 kDa protein similar to p14 membrane fusion protein of Bush viper reovirus and an 18 kDa protein similar to p16 non-structural protein of Baboon orthoreovirus. This is the first report on isolation of an orthoreovirus from an arthropod host associated with bats, and phylogenetic and sequence data suggests that MAHLV constitutes a new species within the Orthoreovirus genus.
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27
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Longdon B, Murray GGR, Palmer WJ, Day JP, Parker DJ, Welch JJ, Obbard DJ, Jiggins FM. The evolution, diversity, and host associations of rhabdoviruses. Virus Evol 2015; 1:vev014. [PMID: 27774286 PMCID: PMC5014481 DOI: 10.1093/ve/vev014] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Metagenomic studies are leading to the discovery of a hidden diversity of RNA viruses. These new viruses are poorly characterized and new approaches are needed predict the host species these viruses pose a risk to. The rhabdoviruses are a diverse family of RNA viruses that includes important pathogens of humans, animals, and plants. We have discovered thirty-two new rhabdoviruses through a combination of our own RNA sequencing of insects and searching public sequence databases. Combining these with previously known sequences we reconstructed the phylogeny of 195 rhabdovirus sequences, and produced the most in depth analysis of the family to date. In most cases we know nothing about the biology of the viruses beyond the host they were identified from, but our dataset provides a powerful phylogenetic approach to predict which are vector-borne viruses and which are specific to vertebrates or arthropods. By reconstructing ancestral and present host states we found that switches between major groups of hosts have occurred rarely during rhabdovirus evolution. This allowed us to propose seventy-six new likely vector-borne vertebrate viruses among viruses identified from vertebrates or biting insects. Based on currently available data, our analysis suggests it is likely there was a single origin of the known plant viruses and arthropod-borne vertebrate viruses, while vertebrate- and arthropod-specific viruses arose at least twice. There are also few transitions between aquatic and terrestrial ecosystems. Viruses also cluster together at a finer scale, with closely related viruses tending to be found in closely related hosts. Our data therefore suggest that throughout their evolution, rhabdoviruses have occasionally jumped between distantly related host species before spreading through related hosts in the same environment. This approach offers a way to predict the most probable biology and key traits of newly discovered viruses.
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Affiliation(s)
- Ben Longdon
- Department of Genetics, University of Cambridge, Cambridge, CB2 3EH
| | | | | | - Jonathan P. Day
- Department of Genetics, University of Cambridge, Cambridge, CB2 3EH
| | - Darren J Parker
- School of Biology, University of St Andrews, St Andrews, KY19 9ST, UK
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland and
| | - John J. Welch
- Department of Genetics, University of Cambridge, Cambridge, CB2 3EH
| | - Darren J. Obbard
- Institute of Evolutionary Biology, and Centre for Immunity Infection and Evolution, University of Edinburgh, Edinburgh, EH9 3JT, UK
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28
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A novel rhabdovirus isolated from the straw-colored fruit bat Eidolon helvum, with signs of antibodies in swine and humans. J Virol 2015; 89:4588-97. [PMID: 25673701 DOI: 10.1128/jvi.02932-14] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
UNLABELLED Bats have been implicated as reservoirs of emerging viruses. Bat species forming large social groups and roosting in proximity to human communities are of particular interest. In this study, we sampled a colony of ca. 350,000 individuals of the straw-colored fruit bat Eidolon helvum in Kumasi, the second largest city of Ghana. A novel rhabdovirus (Kumasi rhabdovirus [KRV]) was isolated in E. helvum cell cultures and passaged to Vero cells as well as interferon-competent human and primate cells (A549 and MA104). Genome composition was typical for a rhabdovirus. KRV was detected in 5.1% of 487 animals, showing association with the spleen but not the brain. Antibody prevalence was 11.5% by immunofluorescence and 6.4% by plaque reduction virus neutralization test (PRNT). Detection throughout 3 sampling years was pronounced in both annual wet seasons, of which only one overlaps the postparturition season. Juvenile bats showed increased viral prevalence. No evidence of infection was obtained in 1,240 female mosquitos (6 different genera) trapped in proximity to the colony to investigate potential vector association. Antibodies were found in 28.9% (5.4% by PRNT) of 107 swine sera but not in similarly large collections of sheep, goat, or cattle sera. The antibody detection rate in human subjects with occupational exposure to the bat colony was 11% (5/45 persons), which was significantly higher than in unexposed adults (0.8% [1/118]; chi square, P < 0.001). KRV is a novel bat-associated rhabdovirus potentially transmitted to humans and swine. Disease associations should be investigated. IMPORTANCE Bats are thought to carry a huge number of as-yet-undiscovered viruses that may pose epidemic threats to humans and livestock. Here we describe a novel dimarhabdovirus which we isolated from a large colony of the straw-colored fruit bat Eidolon helvum in Ghana. As these animals are exposed to humans and several livestock species, we looked for antibodies indicating infection in humans, cattle, swine, sheep, and goats. Signs of infection were found in swine and humans, with increased antibody findings in humans who are occupationally exposed to the bat colony. Our data suggest that it is worthwhile to look for diseases caused by the novel virus in humans and livestock.
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29
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Fischer M, Freuling CM, Müller T, Schatz J, Rasmussen TB, Chriel M, Balkema-Buschmann A, Beer M, Hoffmann B. Identification of rhabdoviral sequences in oropharyngeal swabs from German and Danish bats. Virol J 2014; 11:196. [PMID: 25420461 PMCID: PMC4247638 DOI: 10.1186/s12985-014-0196-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2014] [Accepted: 10/29/2014] [Indexed: 11/10/2022] Open
Abstract
Background In the frame of active lyssavirus surveillance in bats, oropharyngeal swabs from German (N = 2297) and Danish (N = 134) insectivorous bats were investigated using a newly developed generic pan-lyssavirus real-time reverse transcriptase PCR (RT-qPCR). Findings In total, 15 RT-qPCR positive swabs were detected. Remarkably, sequencing of positive samples did not confirm the presence of bat associated lyssaviruses but revealed nine distinct novel rhabdovirus-related sequences. Conclusions Several novel rhabdovirus-related sequences were detected both in German and Danish insectivorous bats. The results also prove that the novel generic pan-lyssavirus RT-qPCR offers a very broad detection range that allows the collection of further valuable data concerning the broad and complex diversity within the family Rhabdoviridae.
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Affiliation(s)
- Melina Fischer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | - Conrad M Freuling
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | - Thomas Müller
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | - Juliane Schatz
- Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | | | - Mariann Chriel
- DTU Vet, Technical University of Denmark, DK-1870, Frederiksberg C, Denmark.
| | - Anne Balkema-Buschmann
- Institute of Novel and Emerging Infectious Diseases, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
| | - Bernd Hoffmann
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, D-17493, Greifswald-Insel Riems, Germany.
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30
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Ng TFF, Driscoll C, Carlos MP, Prioleau A, Schmieder R, Dwivedi B, Wong J, Cha Y, Head S, Breitbart M, Delwart E. Distinct lineage of vesiculovirus from big brown bats, United States. Emerg Infect Dis 2014; 19:1978-80. [PMID: 24274823 PMCID: PMC3840891 DOI: 10.3201/eid1912.121506] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
We identified a novel rhabdovirus, American bat vesiculovirus, from postmortem tissue samples from 120 rabies-negative big brown bats with a history of human contact. Five percent of the tested bats were infected with this virus. The extent of zoonotic exposure and possible health effects in humans from this virus are unknown.
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31
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Kohl C, Kurth A. European bats as carriers of viruses with zoonotic potential. Viruses 2014; 6:3110-28. [PMID: 25123684 PMCID: PMC4147689 DOI: 10.3390/v6083110] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Revised: 07/29/2014] [Accepted: 07/30/2014] [Indexed: 12/23/2022] Open
Abstract
Bats are being increasingly recognized as reservoir hosts of highly pathogenic and zoonotic emerging viruses (Marburg virus, Nipah virus, Hendra virus, Rabies virus, and coronaviruses). While numerous studies have focused on the mentioned highly human-pathogenic bat viruses in tropical regions, little is known on similar human-pathogenic viruses that may be present in European bats. Although novel viruses are being detected, their zoonotic potential remains unclear unless further studies are conducted. At present, it is assumed that the risk posed by bats to the general public is rather low. In this review, selected viruses detected and isolated in Europe are discussed from our point of view in regard to their human-pathogenic potential. All European bat species and their roosts are legally protected and some European species are even endangered. Nevertheless, the increasing public fear of bats and their viruses is an obstacle to their protection. Educating the public regarding bat lyssaviruses might result in reduced threats to both the public and the bats.
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Affiliation(s)
- Claudia Kohl
- Centre for Biological Threats and Special Pathogens, Robert Koch Institute, Nordufer 20, 13353 Berlin, Germany.
| | - Andreas Kurth
- Centre for Biological Threats and Special Pathogens, Robert Koch Institute, Nordufer 20, 13353 Berlin, Germany.
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32
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Gay N, Olival KJ, Bumrungsri S, Siriaroonrat B, Bourgarel M, Morand S. Parasite and viral species richness of Southeast Asian bats: Fragmentation of area distribution matters. Int J Parasitol Parasites Wildl 2014; 3:161-70. [PMID: 25161915 PMCID: PMC4142259 DOI: 10.1016/j.ijppaw.2014.06.003] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Revised: 06/18/2014] [Accepted: 06/24/2014] [Indexed: 01/07/2023]
Abstract
Interest in bat-borne diseases and parasites has grown in the past decade over concerns for human health. However, the drivers of parasite diversity among bat host species are understudied as are the links between parasite richness and emerging risks. Thus, we aimed at exploring factors that explain macro and microparasite species richness in bats from Southeast Asia, a hotspot of emerging infectious diseases. First, we identified bat species that need increased sampling effort for pathogen discovery. Our approach highlights pathogen investigation disparities among species within the same genus, such as Rhinolophus and Pteropus. Secondly, comparative analysis using independent contrasts method allowed the identification of likely factors explaining parasite and viral diversity of bats. Our results showed a key role of bat distribution shape, an index of the fragmentation of bat distribution, on parasite diversity, linked to a decrease for both viral and endoparasite species richness. We discuss how our study may contribute to a better understanding of the link between parasite species richness and emergence.
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Affiliation(s)
- Noellie Gay
- CNRS – CIRAD AGIRs, Centre d’Infectiologie Christophe Mérieux du Laos, Vientiane, Lao Democratic People’s Republic
- Institut des Sciences de l’Evolution, CNRS-IRD-UM2, CC065, Université de Montpellier 2, 34095 Montpellier, France
| | | | - Sara Bumrungsri
- Bureau of Conservation, Research & Education Zoological Park Organization 71 Rama 5 Road, Dusit, Bangkok, Thailand
| | | | - Mathieu Bourgarel
- Institut des Sciences de l’Evolution, CNRS-IRD-UM2, CC065, Université de Montpellier 2, 34095 Montpellier, France
| | - Serge Morand
- CNRS – CIRAD AGIRs, Centre d’Infectiologie Christophe Mérieux du Laos, Vientiane, Lao Democratic People’s Republic
- Institut des Sciences de l’Evolution, CNRS-IRD-UM2, CC065, Université de Montpellier 2, 34095 Montpellier, France
- Department of Helminthology, Faculty of Tropical Medicine, Mahidol University, 420/6 Ratchavithi Rd, Bangkok, Thailand
- Walai Rukhavej Botanical Research Institute, Maha Sarakham University, Maha Sarakham, Thailand
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Interspecific variation in redox status regulation and immune defence in five bat species: the role of ectoparasites. Oecologia 2014; 175:811-23. [DOI: 10.1007/s00442-014-2959-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2013] [Accepted: 04/18/2014] [Indexed: 12/31/2022]
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Kading RC, Gilbert AT, Mossel EC, Crabtree MB, Kuzmin IV, Niezgoda M, Agwanda B, Markotter W, Weil MR, Montgomery JM, Rupprecht CE, Miller BR. Isolation and molecular characterization of Fikirini rhabdovirus, a novel virus from a Kenyan bat. J Gen Virol 2013; 94:2393-2398. [PMID: 23939976 DOI: 10.1099/vir.0.053983-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Zoonotic and vector-borne pathogens have comprised a significant component of emerging human infections in recent decades, and bats are increasingly recognized as reservoirs for many of these disease agents. To identify novel pathogens associated with bats, we screened tissues of bats collected in Kenya. Virus isolates were identified by next generation sequencing of viral nucleic acid preparations from the infected cell culture supernatant and characterized. Here we report the identification of Fikirini rhabdovirus, a novel rhabdovirus isolated from a bat, Hipposideros vittatus, captured along the Kenyan coast.
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Affiliation(s)
- Rebekah C Kading
- Centers for Disease Control and Prevention, Division of Vector-borne Diseases, Arbovirus Diseases Branch, Fort Collins, CO, USA
| | - Amy T Gilbert
- Centers for Disease Control and Prevention, Division of High Consequence Pathogens and Pathology, Poxvirus and Rabies Branch, Atlanta, GA, USA
| | - Eric C Mossel
- Centers for Disease Control and Prevention, Division of Vector-borne Diseases, Arbovirus Diseases Branch, Fort Collins, CO, USA
| | - Mary B Crabtree
- Centers for Disease Control and Prevention, Division of Vector-borne Diseases, Arbovirus Diseases Branch, Fort Collins, CO, USA
| | - Ivan V Kuzmin
- Centers for Disease Control and Prevention, Division of High Consequence Pathogens and Pathology, Poxvirus and Rabies Branch, Atlanta, GA, USA
| | - Michael Niezgoda
- Centers for Disease Control and Prevention, Division of High Consequence Pathogens and Pathology, Poxvirus and Rabies Branch, Atlanta, GA, USA
| | | | - Wanda Markotter
- University of Pretoria, Department of Microbiology and Plant Pathology, Pretoria, South Africa
| | - M Ryan Weil
- Centers for Disease Control and Prevention, Office of Infectious Disease, National Center for Emerging and Zoonotic Infectious Diseases, Atlanta, GA, USA.,SRA International, Atlanta, GA, USA
| | - Joel M Montgomery
- Centers for Disease Control and Prevention, Global Disease Detection Program, Nairobi, Kenya
| | - Charles E Rupprecht
- Centers for Disease Control and Prevention, Division of High Consequence Pathogens and Pathology, Poxvirus and Rabies Branch, Atlanta, GA, USA
| | - Barry R Miller
- Centers for Disease Control and Prevention, Division of Vector-borne Diseases, Arbovirus Diseases Branch, Fort Collins, CO, USA
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A reverse-transcription PCR method for detecting all known ephemeroviruses in clinical samples. J Virol Methods 2013; 191:128-35. [PMID: 23623826 DOI: 10.1016/j.jviromet.2013.04.011] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 04/08/2013] [Accepted: 04/10/2013] [Indexed: 11/21/2022]
Abstract
Bovine ephemeral fever virus (BEFV) is an economically important vector-borne pathogen of cattle in tropical and sub-tropical regions of Australia, Asia, Africa and the Middle East. Although clinical cases of bovine ephemeral fever are usually attributed to BEFV, definitive diagnosis is rarely performed and at least two other related viruses, kotonkon virus (KOTV; an ephemerovirus) and Fukuoka virus (FUKAV; an unassigned rhabdovirus), can cause similar clinical signs. As vaccines have been developed against BEFV but not against KOTV or FUKAV, a test capable of detecting and differentiating these pathogens would be useful. In the present study, an RT-PCR method using degenerate primers designed to a region of block III of the polymerase (L) gene was developed and optimised for primer annealing temperature and MgCl₂ concentration. The RT-PCR detected all known ephemeroviruses and several other closely related insect-transmitted rhabdoviruses, including FUKAV. Viruses could be identified by subsequent sequencing and phylogenetic analysis of the amplicons. BEFV could be detected using tissue culture isolates or cattle blood to a sensitivity of 500 RNA copies per reaction. This test will be useful for establishing the identity of the causative agent of bovine ephemeral fever from field samples and cultured isolates.
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