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Seregin IV, Kozhevnikova AD. The Role of Low-Molecular-Weight Organic Acids in Metal Homeostasis in Plants. Int J Mol Sci 2024; 25:9542. [PMID: 39273488 PMCID: PMC11394999 DOI: 10.3390/ijms25179542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Revised: 08/02/2024] [Accepted: 08/21/2024] [Indexed: 09/15/2024] Open
Abstract
Low-molecular-weight organic acids (LMWOAs) are essential O-containing metal-binding ligands involved in maintaining metal homeostasis, various metabolic processes, and plant responses to biotic and abiotic stress. Malate, citrate, and oxalate play a crucial role in metal detoxification and transport throughout the plant. This review provides a comparative analysis of the accumulation of LMWOAs in excluders, which store metals mainly in roots, and hyperaccumulators, which accumulate metals mainly in shoots. Modern concepts of the mechanisms of LMWOA secretion by the roots of excluders and hyperaccumulators are summarized, and the formation of various metal complexes with LMWOAs in the vacuole and conducting tissues, playing an important role in the mechanisms of metal detoxification and transport, is discussed. Molecular mechanisms of transport of LMWOAs and their complexes with metals across cell membranes are reviewed. It is discussed whether different endogenous levels of LMWOAs in plants determine their metal tolerance. While playing an important role in maintaining metal homeostasis, LMWOAs apparently make a minor contribution to the mechanisms of metal hyperaccumulation, which is associated mainly with root exudates increasing metal bioavailability and enhanced xylem loading of LMWOAs. The studies of metal-binding compounds may also contribute to the development of approaches used in biofortification, phytoremediation, and phytomining.
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Affiliation(s)
- Ilya V Seregin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya st., 35, Moscow 127276, Russia
| | - Anna D Kozhevnikova
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya st., 35, Moscow 127276, Russia
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Mehrab N, Chorom M, Norouzi Masir M, Biswas JK, Fernandes de Souza M, Meers E. Impact of soil treatment with Nitrilo Triacetic Acid (NTA) on Cd fractionation and microbial biomass in cultivated and uncultivated calcareous soil. JOURNAL OF ENVIRONMENTAL HEALTH SCIENCE & ENGINEERING 2023; 21:319-332. [PMID: 37869606 PMCID: PMC10584783 DOI: 10.1007/s40201-023-00857-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Accepted: 04/08/2023] [Indexed: 10/24/2023]
Abstract
Purpose The aim of this study was to evaluate the effectiveness of nitrilotriacetic acid (NTA) on cadmium (Cd) fractions and microbial biomass in a calcareous soil spiked with Cd under cultivated (Zea mays L.) and uncultivated regime subject to soil leaching condition. Expanding investigations related to soil-plant interactions on metal-contaminated soils with insights on microbial activity and associated soil toxicity perspective provides novel perspectives on using metal-chelating agents for soil remediation. Methods The experimental factors were three levels of Cd contamination (0, 25, and 50 mg kg-1 soil) and three levels of NTA (0, 15, and 30 mmol L-1) in loamy soil under maize-cultured and non-cultured conditions. During the experiment, the adding NTA and leaching processes were performed three times. Results The results showed that the amount of leached Cd decreased in cultivated soil compared to uncultivated soil due to partial uptake of soluble Cd by plant roots and changes in Cd fractions in soil, so that Cd leached in Cd50NTA30 was 9.2 and 6.1 mg L-1, respectively, in uncultivated and cultivated soils. Also, Cd leached in Cd25NTA30 was 5.7 and 3.1 mg L-1 respectively, in uncultivated and cultivated soils. The best treatment in terms of chemical and microbial characteristics of the soil with the high percentage of Cd removed from the soil was Cd25NTA30 in cultivated soil. In Cd25NTA30 compared to Cd25NTA0 in cultivated soil, pH (0.25 unit), microbial biomass carbon (MBC, 65.0 mg kg-1), and soil respiration (27.5 mg C-CO2 kg-1 24 h-1) decreased, while metabolic quotient (qCO2, 0.05) and dissolved organic carbon (DOC, 20.0 mg L-1) increased. Moreover, the changes of Cd fractions in Cd25NTA30 in cultivated soil compared to uncultivated soil were as follows; the exchangeable Cd (F1, 0.27 mg kg-1) and Fe/Mn-oxide-bounded Cd (F4, 0.15 mg kg-1) fractions increased, in contrast, carbonate-Cd (F2, 2.67 mg kg-1) and, organically bounded Cd (F3, 0.06 mg kg-1) fractions decreased. NTA had no significant effect on the residual fraction (F5). Conclusion The use of NTA, especially in calcareous soils, where most of the Cd is bound to calcium carbonate, was able to successfully convert insoluble fractions of Cd into soluble forms and increase the removal efficiency of Cd in the phytoremediation method. NTA is a non-toxic chelating agent to improve the accumulation of Cd in maize.
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Affiliation(s)
- Narges Mehrab
- Department of Soil Science, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
- Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Mostafa Chorom
- Department of Soil Science, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - Mojtaba Norouzi Masir
- Department of Soil Science, Faculty of Agriculture, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - Jayanta Kumar Biswas
- Department of Ecological Studies, and International Centre for Ecological Engineering, University of Kalyani, Kalyani, West Bengal India
| | - Marcella Fernandes de Souza
- Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Erik Meers
- Department of Green Chemistry and Technology, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
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Zhang Y, Fernie AR. The Role of TCA Cycle Enzymes in Plants. Adv Biol (Weinh) 2023; 7:e2200238. [PMID: 37341441 DOI: 10.1002/adbi.202200238] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 04/29/2023] [Indexed: 06/22/2023]
Abstract
As one of the iconic pathways in plant metabolism, the tricarboxylic acid (TCA) cycle is commonly thought to not only be responsible for the oxidization of respiratory substrate to drive ATP synthesis but also provide carbon skeletons to anabolic processes and contribute to carbon-nitrogen interaction and biotic stress responses. The functions of the TCA cycle enzymes are characterized by a saturation transgenesis approach, whereby the constituent expression of proteins is knocked out or reduced in order to investigate their function in vivo. The alteration of TCA cycle enzyme expression results in changed plant growth and photosynthesis under controlled conditions. Moreover, improvements in plant performance and postharvest properties are reported by overexpression of either endogenous forms or heterologous genes of a number of the enzymes. Given the importance of the TCA cycle in plant metabolism regulation, here, the function of each enzyme and its roles in different tissues are discussed. This article additionally highlights the recent finding that the plant TCA cycle, like that of mammals and microbes, dynamically assembles functional substrate channels or metabolons and discusses the implications of this finding to the current understanding of the metabolic regulation of the plant TCA cycle.
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Affiliation(s)
- Youjun Zhang
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, 4000, Bulgaria
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, 4000, Bulgaria
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4
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Siqueira JA, Wakin T, Batista-Silva W, Silva JCF, Vicente MH, Silva JC, Clarindo WR, Zsögön A, Peres LEP, De Veylder L, Fernie AR, Nunes-Nesi A, Araújo WL. A long and stressful day: Photoperiod shapes aluminium tolerance in plants. JOURNAL OF HAZARDOUS MATERIALS 2022; 432:128704. [PMID: 35313159 DOI: 10.1016/j.jhazmat.2022.128704] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 03/06/2022] [Accepted: 03/12/2022] [Indexed: 06/14/2023]
Abstract
Aluminium (Al), a limiting factor for crop productivity in acidic soils (pH ≤ 5.5), imposes drastic constraints for food safety in developing countries. The major mechanisms that allow plants to cope with Al involve manipulations of organic acids metabolism and DNA-checkpoints. When assumed individually both approaches have been insufficient to overcome Al toxicity. On analysing the centre of origin of most cultivated plants, we hypothesised that day-length seems to be a pivotal agent modulating Al tolerance across distinct plant species. We observed that with increasing distance from the Equator, Al tolerance decreases, suggesting a relationship with the photoperiod. We verified that long-day (LD) species are generally more Al-sensitive than short-day (SD) species, whereas genetic conversion of tomato for SD growth habit boosts Al tolerance. Reduced Al tolerance correlates with DNA-checkpoint activation under LD. Furthermore, DNA-checkpoint-related genes are under positive selection in Arabidopsis accessions from regions with shorter days, suggesting that photoperiod act as a selective barrier for Al tolerance. A diel regulation and genetic diversity affect Al tolerance, suggesting that day-length orchestrates Al tolerance. Altogether, photoperiodic control of Al tolerance might contribute to solving the historical obstacle that imposes barriers for developing countries to reach a sustainable agriculture.
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Affiliation(s)
- João Antonio Siqueira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Thiago Wakin
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Willian Batista-Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - José Cleydson F Silva
- National Institute of Science and Technology in Plant-Pest Interactions, Bioagro, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Matheus H Vicente
- Laboratory of Hormonal Control of Plant Development. Departamento de Ciências Biológicas (LCB), Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, SP 13418-900, Brazil
| | - Jéssica C Silva
- Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Wellington R Clarindo
- Departamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Agustin Zsögön
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Lazaro E P Peres
- Laboratory of Hormonal Control of Plant Development. Departamento de Ciências Biológicas (LCB), Escola Superior de Agricultura "Luiz de Queiroz", Universidade de São Paulo, Piracicaba, SP 13418-900, Brazil
| | - Lieven De Veylder
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent B-9052, Belgium; VIB Center for Plant Systems Biology, Ghent B-9052, Belgium
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm 14476, Germany
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, Viçosa, MG 36570-900, Brazil.
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5
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Siqueira JA, Silva MF, Wakin T, Nunes-Nesi A, Araújo WL. Metabolic and DNA checkpoints for the enhancement of Al tolerance. JOURNAL OF HAZARDOUS MATERIALS 2022; 430:128366. [PMID: 35168102 DOI: 10.1016/j.jhazmat.2022.128366] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 01/04/2022] [Accepted: 01/24/2022] [Indexed: 06/14/2023]
Abstract
Acidic soils are a major limiting factor for food production in many developing countries. High concentrations of soluble Al cations, particularly Al3+, inhibit cell division and root elongation in plants. Al3+ damages several biomolecules, including DNA, impairing gene expression and cell cycle progression. Notably, the loss-of-function mutants of DNA checkpoints may mediate Al tolerance. Furthermore, mitochondrial organic acids play key roles in neutralizing Al3+ within the cell and around the rhizosphere. Here, we provide knowledge synthesis on interactions between checkpoints related to mitochondrial organic acid homeostasis and DNA integrity mediating Al tolerance in land plants. These interactions, coupled with remarkable advances in tools related to metabolism and cell cycle, may facilitate the development of next-generation productive crops under Al toxicity.
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Affiliation(s)
- João Antonio Siqueira
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
| | - Marcelle Ferreira Silva
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
| | - Thiago Wakin
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
| | - Adriano Nunes-Nesi
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil
| | - Wagner L Araújo
- Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-900 Viçosa, MG, Brazil.
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Pinto VB, Ferreira PG, Vidigal PMP, de Oliveira Mendes TA, Dal-Bianco M, de Magalhaes JV, Viana JMS. Uncovering the transcriptional response of popcorn (Zea mays L. var. everta) under long-term aluminum toxicity. Sci Rep 2021; 11:19644. [PMID: 34608228 PMCID: PMC8490451 DOI: 10.1038/s41598-021-99097-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 09/20/2021] [Indexed: 11/21/2022] Open
Abstract
To date, the investigation of genes involved in Al resistance has focused mainly on microarrays and short periods of Al exposure. We investigated genes involved in the global response under Al stress by tracking the expression profile of two inbred popcorn lines with different Al sensitivity during 72 h of Al stress. A total of 1003 differentially expressed genes were identified in the Al-sensitive line, and 1751 were identified in the Al-resistant line, of which 273 were shared in both lines. Genes in the category of "response to abiotic stress" were present in both lines, but there was a higher number in the Al-resistant line. Transcription factors, genes involved in fatty acid biosynthesis, and genes involved in cell wall modifications were also detected. In the Al-resistant line, GST6 was identified as one of the key hub genes by co-expression network analysis, and ABC6 may play a role in the downstream regulation of CASP-like 5. In addition, we suggest a class of SWEET transporters that might be involved in the regulation of vacuolar sugar storage and may serve as mechanisms for Al resistance. The results and conclusions expand our understanding of the complex mechanisms involved in Al toxicity and provide a platform for future functional analyses and genomic studies of Al stress in popcorn.
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Affiliation(s)
- Vitor Batista Pinto
- Departamento de Biologia Geral and Laboratório de Bioquímica Genética de Plantas/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil.
| | - Priscila Gonçalves Ferreira
- Laboratório de Biologia Sintética e Modelagem de Sistemas Biológicos, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Pedro Marcus Pereira Vidigal
- Núcleo de Análise de Biomoléculas (NuBioMol), Centro de Ciências Biológicas, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Tiago Antônio de Oliveira Mendes
- Laboratório de Biologia Sintética e Modelagem de Sistemas Biológicos, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
| | - Maximiller Dal-Bianco
- Laboratório de Bioquímica Genética de Plantas/BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, 36570-000, Brazil
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Singh CK, Singh D, Taunk J, Chaudhary P, Tomar RSS, Chandra S, Singh D, Pal M, Konjengbam NS, Singh MP, Singh Sengar R, Sarker A. Comparative Inter- and IntraSpecies Transcriptomics Revealed Key Differential Pathways Associated With Aluminium Stress Tolerance in Lentil. FRONTIERS IN PLANT SCIENCE 2021; 12:693630. [PMID: 34531881 PMCID: PMC8438445 DOI: 10.3389/fpls.2021.693630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 07/30/2021] [Indexed: 05/28/2023]
Abstract
Aluminium stress causes plant growth retardation and engenders productivity loss under acidic soil conditions. This study accentuates morpho-physiological and molecular bases of aluminium (Al) tolerance within and between wild (ILWL-15) and cultivated (L-4602 and BM-4) lentil species. Morpho-physiological studies revealed better cyto-morphology of tolerant genotypes over sensitive under Al3+ stress conditions. Mitotic lesions were observed in root cells under these conditions. Transcriptome analysis under Al3+ stress revealed 30,158 specifically up-regulated genes in different comparison groups showing contigs between 15,305 and 18,861 bp. In tolerant genotypes, top up-regulated differentially expressed genes (DEGs) were found to be involved in organic acid synthesis and exudation, production of antioxidants, callose synthesis, protein degradation, and phytohormone- and calcium-mediated signalling under stress conditions. DEGs associated with epigenetic regulation and Al3+ sequestration inside vacuole were specifically upregulated in wild and cultivars, respectively. Based on assembled unigenes, an average of 6,645.7 simple sequence repeats (SSRs) and 14,953.7 high-quality single nucleotide polymorphisms (SNPs) were spotted. By quantitative real-time polymerase chain reaction (qRT-PCR), 12 selected genes were validated. Gene ontology (GO) annotation revealed a total of 8,757 GO terms in three categories, viz., molecular, biological, and cellular processes. Kyoto Encyclopaedia of Genes and Genomes pathway scanning also revealed another probable pathway pertaining to metacaspase-1,-4, and -9 for programmed cell death under Al-stress conditions. This investigation reveals key inter- and intraspecies metabolic pathways associated with Al-stress tolerance in lentil species that can be utilised in designing future breeding programmes to improve lentil and related species towards Al3+ stress.
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Affiliation(s)
- Chandan Kumar Singh
- Division of Genetics, Indian Agricultural Research Institute, New Delhi, India
- Amity Institute of Biotechnology, Amity University, Noida, India
| | - Dharmendra Singh
- Division of Genetics, Indian Agricultural Research Institute, New Delhi, India
| | - Jyoti Taunk
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, India
| | - Priya Chaudhary
- Division of Genetics, Indian Agricultural Research Institute, New Delhi, India
| | - Ram Sewak Singh Tomar
- College of Horticulture and Forestry, Rani Lakshmi Bai Central Agricultural University, Jhansi, India
| | - Shivani Chandra
- Amity Institute of Biotechnology, Amity University, Noida, India
| | - Deepti Singh
- Department of Botany, Meerut College, Meerut, India
| | - Madan Pal
- Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, India
| | - Noren Singh Konjengbam
- College of Post Graduate Studies in Agricultural Sciences, Central Agricultural University—Imphal, Umiam, India
| | - M. Premjit Singh
- College of Agriculture, Central Agricultural University—Imphal, Iroisemba, India
| | - Rakesh Singh Sengar
- College of Biotechnology, Sardar Vallabh Bhai Patel Agricultural University, Meerut, India
| | - Ashutosh Sarker
- International Center for Agriculture Research in the Dry Areas, New Delhi, India
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Kulkarni V, Sawbridge T, Kaur S, Hayden M, Slater AT, Norton SL. New sources of lentil germplasm for aluminium toxicity tolerance identified by high throughput hydroponic screening. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2021; 27:563-576. [PMID: 33854284 PMCID: PMC7981344 DOI: 10.1007/s12298-021-00954-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 01/13/2021] [Accepted: 02/10/2021] [Indexed: 05/11/2023]
Abstract
Aluminium (Al) toxicity in acid soils inhibits root elongation and development causing reduced water and nutrient uptake by the root system, which ultimately reduces the crop yield. This study established a high throughput hydroponics screening method and identified Al toxicity tolerant accessions from a set of putative acid tolerant lentil accessions. Four-day old lentil seedlings were screened at 5 µM Al (pH 4.5) for three days in hydroponics. Measured pre and post treatment root length was used to calculate the change in root length (ΔRL) and relative root growth (RRG%). A subset of 15 selected accessions were used for acid soil Al screening, and histochemical and biochemical analyses. Al treatment significantly reduced the ΔRL with an average of 32.3% reduction observed compared to the control. Approximately 1/4 of the focused identification of germplasm strategy accessions showed higher RRG% than the known tolerant line ILL6002 which has the RRG% of 37.9. Very tolerant accessions with RRG% of > 52% were observed in 5.4% of the total accessions. A selection index calculated based on all root traits in acid soil screening was highest in AGG70137 (636.7) whereas it was lowest in Precoz (76.3). All histochemical and biochemical analyses supported the hydroponic results as Northfield, AGG70137, AGG70561 and AGG70281 showed consistent good performance. The identified new sources of Al tolerant lentil germplasm can be used to breed new Al toxicity tolerant lentil varieties. The established high throughput hydroponic method can be routinely used for screening lentil breeding populations for Al toxicity tolerance. Future recommendations could include evaluation of the yield potential of the selected subset of accessions under acid soil field conditions, and the screening of a wider range of landrace accessions originating from areas with Al toxic acid soils.
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Affiliation(s)
- Vani Kulkarni
- Australian Grains Genebank, Agriculture Victoria, 110 Natimuk Road, Horsham, VIC 3400 Australia
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3086 Australia
| | - Tim Sawbridge
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3086 Australia
- AgriBio, Agriculture Victoria, 5 Ring Road, Bundoora, VIC 3083 Australia
| | - Sukhjiwan Kaur
- AgriBio, Agriculture Victoria, 5 Ring Road, Bundoora, VIC 3083 Australia
| | - Matthew Hayden
- School of Applied Systems Biology, La Trobe University, Bundoora, VIC 3086 Australia
- AgriBio, Agriculture Victoria, 5 Ring Road, Bundoora, VIC 3083 Australia
| | - Anthony T. Slater
- AgriBio, Agriculture Victoria, 5 Ring Road, Bundoora, VIC 3083 Australia
| | - Sally L. Norton
- Australian Grains Genebank, Agriculture Victoria, 110 Natimuk Road, Horsham, VIC 3400 Australia
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Takahashi H, Pradal C. Root phenotyping: important and minimum information required for root modeling in crop plants. BREEDING SCIENCE 2021; 71:109-116. [PMID: 33762880 DOI: 10.1071/bt06118] [Citation(s) in RCA: 395] [Impact Index Per Article: 131.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Accepted: 12/08/2020] [Indexed: 05/24/2023]
Abstract
As plants cannot relocate, they require effective root systems for water and nutrient uptake. Root development plasticity enables plants to adapt to different environmental conditions. Research on improvements in crop root systems is limited in comparison with that in shoots as the former are difficult to image. Breeding more effective root systems is proposed as the "second green revolution". There are several recent publications on root system architecture (RSA), but the methods used to analyze the RSA have not been standardized. Here, we introduce traditional and current root-imaging methods and discuss root structure phenotyping. Some important root structures have not been standardized as roots are easily affected by rhizosphere conditions and exhibit greater plasticity than shoots; moreover, root morphology significantly varies even in the same genotype. For these reasons, it is difficult to define the ideal root systems for breeding. In this review, we introduce several types of software to analyze roots and identify important root parameters by modeling to simplify the root system characterization. These parameters can be extracted from photographs captured in the field. This modeling approach is applicable to various legacy root data stored in old or unpublished formats. Standardization of RSA data could help estimate root ideotypes.
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Affiliation(s)
- Hirokazu Takahashi
- Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8601, Japan
| | - Christophe Pradal
- UMR AGAP, CIRAD, F-34398 Montpellier, France
- Inria & LIRMM, University of Montpellier, CNRS, Montpellier, France
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10
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Zhang Y, Fernie AR. On the role of the tricarboxylic acid cycle in plant productivity. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:1199-1216. [PMID: 29917310 DOI: 10.1111/jipb.12690] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 06/18/2018] [Indexed: 05/10/2023]
Abstract
The tricarboxylic acid (TCA) cycle is one of the canonical energy pathways of living systems, as well as being an example of a pathway in which dynamic enzyme assemblies, or metabolons, are well characterized. The role of the enzymes have been the subject of saturated transgenesis approaches, whereby the expression of the constituent enzymes were reduced or knocked out in order to ascertain their in vivo function. Some of the resultant plants exhibited improved photosynthesis and plant growth, under controlled greenhouse conditions. In addition, overexpression of the endogenous genes, or heterologous forms of a number of the enzymes, has been carried out in tomato fruit and the roots of a range of species, and in some instances improvement in fruit yield and postharvest properties and plant performance, under nutrient limitation, have been reported, respectively. Given a number of variants, in nature, we discuss possible synthetic approaches involving introducing these variants, or at least a subset of them, into plants. We additionally discuss the likely consequences of introducing synthetic metabolons, wherein certain pairs of reactions are artificially permanently assembled into plants, and speculate as to future strategies to further improve plant productivity by manipulation of the core metabolic pathway.
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Affiliation(s)
- Youjun Zhang
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000 Plovdiv, Bulgaria
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000 Plovdiv, Bulgaria
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Kenobi K, Atkinson JA, Wells DM, Gaju O, De Silva JG, Foulkes MJ, Dryden IL, Wood ATA, Bennett MJ. Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:4969-4981. [PMID: 29048563 PMCID: PMC5853436 DOI: 10.1093/jxb/erx300] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Accepted: 08/02/2017] [Indexed: 05/23/2023]
Abstract
Root architecture impacts water and nutrient uptake efficiency. Identifying exactly which root architectural properties influence these agronomic traits can prove challenging. In this paper, approximately 300 wheat (Triticum aestivum) plants were divided into four groups using two binary classifications, high versus low nitrogen uptake efficiency (NUpE), and high versus low nitrate in the growth medium. The root system architecture for each wheat plant was captured using 16 quantitative variables. The multivariate analysis tool, linear discriminant analysis, was used to construct composite variables, each a linear combination of the original variables, such that the score of the plants on the new variables showed the maximum between-group variability. The results show that the distribution of root-system architecture traits differs between low- and high-NUpE plants and, less strongly, between low-NUpE plants grown on low versus high nitrate media.
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Affiliation(s)
- Kim Kenobi
- Department of Mathematics, Aberystwyth University, Penglais, Aberystwyth, Ceredigion
| | - Jonathan A Atkinson
- Centre for Plant Integrative Biology, School of Biosciences, Sutton Bonington Campus, University of Nottingham, UK
| | - Darren M Wells
- Centre for Plant Integrative Biology, School of Biosciences, Sutton Bonington Campus, University of Nottingham, UK
| | - Oorbessy Gaju
- Division of Plant and Crop Sciences, Sutton Bonington Campus, University of Nottingham, UK
| | - Jayalath G De Silva
- Division of Plant and Crop Sciences, Sutton Bonington Campus, University of Nottingham, UK
| | - M John Foulkes
- Division of Plant and Crop Sciences, Sutton Bonington Campus, University of Nottingham, UK
| | - Ian L Dryden
- Centre for Plant Integrative Biology, School of Biosciences, Sutton Bonington Campus, University of Nottingham, UK
- School of Mathematical Sciences, University of Nottingham, University Park, UK
| | - Andrew T A Wood
- Centre for Plant Integrative Biology, School of Biosciences, Sutton Bonington Campus, University of Nottingham, UK
- School of Mathematical Sciences, University of Nottingham, University Park, UK
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, School of Biosciences, Sutton Bonington Campus, University of Nottingham, UK
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12
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Integrated physiological and proteomic analysis reveals underlying response and defense mechanisms of Brachypodium distachyon seedling leaves under osmotic stress, cadmium and their combined stresses. J Proteomics 2017; 170:1-13. [PMID: 28986270 DOI: 10.1016/j.jprot.2017.09.015] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2017] [Revised: 09/18/2017] [Accepted: 09/24/2017] [Indexed: 02/06/2023]
Abstract
Drought stress, a major abiotic stress, commonly occurs in metal-contaminated environments and affects crop growth and yield. In this study, we performed the first integrated phenotypic, physiological, and proteomic analysis of Brachypodium distachyon L. seedling leaves under polyethylene glycol (PEG) mock osmotic stress, cadmium (Cd2+), and their combined stresses. Combined osmotic and Cd2+ stress had more significant effects than each individual stress on seedling growth, and the physiological traits and ultrastructures of leaves. Totally 117 differentially accumulated protein (DAP) spots detected by two-dimensional difference gel electrophoresis (2D-DIGE) were identified, and representing 89 unique proteins under individual and combined stresses. These DAPs were involved in photosynthesis/respiration (34%), energy and carbon metabolism (21%), stress/defense/detoxification (13%), protein folding and degradation (12%), and amino acid metabolism (7%). Principal component analysis (PCA) revealed that DAPs from the Cd2+ and combined stresses grouped much closer than those from osmotic stress, indicating Cd2+ and combined stresses resulted in more changes to the leaf proteome than osmotic stress alone. Protein-protein interaction analyses showed that a 14-3-3 centered sub-network could play important roles in responses to abiotic stresses. An overview pathway of proteome metabolic changes in Bd21 seedling leaves under combined stresses is proposed, representing a synergistic responsive network and underlying response and defense mechanisms. SIGNIFICANCE Drought stress is one of the major abiotic stresses, which commonly occurs in metal-contaminated environments, and affects crop growth and yield performance. We performed the first integrated phenotypic, physiological and proteomic analysis of Brachypodium distachyon L. seedling leaves under drought (PEG), cadmium (Cd2+) and their combined stresses.
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Kichigina NE, Puhalsky JV, Shaposhnikov AI, Azarova TS, Makarova NM, Loskutov SI, Safronova VI, Tikhonovich IA, Vishnyakova MA, Semenova EV, Kosareva IA, Belimov AA. Aluminum exclusion from root zone and maintenance of nutrient uptake are principal mechanisms of Al tolerance in Pisum sativum L. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2017; 23:851-863. [PMID: 29158634 PMCID: PMC5671451 DOI: 10.1007/s12298-017-0469-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Revised: 06/21/2017] [Accepted: 09/11/2017] [Indexed: 05/29/2023]
Abstract
Our study aimed to evaluate intraspecific variability of pea (Pisum sativum L.) in Al tolerance and to reveal mechanisms underlying genotypic differences in this trait. At the first stage, 106 pea genotypes were screened for Al tolerance using root re-elongation assay based on staining with eriochrome cyanine R. The root re-elongation zone varied from 0.5 mm to 14 mm and relationships between Al tolerance and provenance or phenotypic traits of genotypes were found. Tolerance index (TI), calculated as a biomass ratio of Al-treated and non-treated contrasting genotypes grown in hydroponics for 10 days, varied from 30% to 92% for roots and from 38% to 90% for shoots. TI did not correlate with root or shoot Al content, but correlated positively with increasing pH and negatively with residual Al concentration in nutrient solution in the end of experiments. Root exudation of organic acid anions (mostly acetate, citrate, lactate, pyroglutamate, pyruvate and succinate) significantly increased in several Al-treated genotypes, but did not correlate with TI. Al-treatment decreased Ca, Co, Cu, K, Mg, Mn, Mo, Ni, S and Zn contents in roots and/or shoots, whereas contents of several elements (P, B, Fe and Mo in roots and B and Fe in shoots) increased, suggesting that Al toxicity induced substantial disturbances in uptake and translocation of nutrients. Nutritional disturbances were more pronounced in Al sensitive genotypes. In conclusion, pea has a high intraspecific variability in Al tolerance and this trait is associated with provenance and phenotypic properties of plants. Transformation of Al to unavailable (insoluble) forms in the root zone and the ability to maintain nutrient uptake are considered to be important mechanisms of Al tolerance in this plant species.
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Affiliation(s)
- Natalia E. Kichigina
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Jan V. Puhalsky
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Aleksander I. Shaposhnikov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Tatiana S. Azarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Natalia M. Makarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Svyatoslav I. Loskutov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Vera I. Safronova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Igor A. Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
- Saint-Petersburg State University, University Embankment, Saint-Petersburg, Russian Federation 199034
| | - Margarita A. Vishnyakova
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Elena V. Semenova
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Irina A. Kosareva
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Andrey A. Belimov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
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14
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Borgo L. Evaluation of buffers toxicity in tobacco cells: Homopiperazine-1,4-bis (2-ethanesulfonic acid) is a suitable buffer for plant cells studies at low pH. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 115:119-125. [PMID: 28364708 DOI: 10.1016/j.plaphy.2017.03.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Revised: 03/15/2017] [Accepted: 03/17/2017] [Indexed: 06/07/2023]
Abstract
Low pH is an important environmental stressor of plant root cells. Understanding the mechanisms of stress and tolerance to acidity is critical; however, there is no widely accepted pH buffer for studies of plant cells at low pH. Such a buffer might also benefit studies of Al toxicity, in which buffering at low pH is also important. The challenge is to find a buffer with minimal cellular effects. We examined the cytotoxicity and possible metabolic disturbances of four buffers that have adequate pKa values and potential use for studies in the pH range of 4.0-5.0. These were homopipes (homopiperazine-1,4-bis (2-ethanesulfonic acid); pKa1 4.4), 3,3-dimethylglutaric acid (pKa1 3.73), β-alanine (pKa1 3.70) and potassium biphthalate (pKa1 2.95; pKa2 5.41). First, tobacco BY-2 cells were grown in a rich medium containing 10 mM of each buffer or MES (2-(N-morpholino) ethanesulfonic acid) as a control, with the pH initially adjusted to 5.7. β-alanine was clearly toxic and dimethylgluturate and biphthalate were found to be cytostatic, in which no culture growth occurred but cell viability was either unaffected or decreased only after 5 days. Only homopipes allowed normal culture growth and cell viability. Homopipes (10 mM) was then tested in cell cultures with an initial pH of 4.3 ± 0.17 in minimal medium to examine whether its undissociated species (H2A) displayed any cellular effects and no cytotoxic effects were observed. It is possible to conclude that among tested buffers, homopipes is the most suitable for studies at low pH, and may be especially useful for aluminum toxicity experiments.
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Affiliation(s)
- Lucélia Borgo
- Centro de Energia Nuclear na Agricultura, Universidade de São Paulo, Avenida Centenário, 300, Piracicaba, São Paulo, 13416-000, Brazil.
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15
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Overexpression of B11 Gene in Transgenic Rice Increased Tolerance to Aluminum Stress. HAYATI JOURNAL OF BIOSCIENCES 2017. [DOI: 10.1016/j.hjb.2017.08.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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16
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Bojórquez-Quintal E, Escalante-Magaña C, Echevarría-Machado I, Martínez-Estévez M. Aluminum, a Friend or Foe of Higher Plants in Acid Soils. FRONTIERS IN PLANT SCIENCE 2017; 8:1767. [PMID: 29075280 PMCID: PMC5643487 DOI: 10.3389/fpls.2017.01767] [Citation(s) in RCA: 170] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2017] [Accepted: 09/27/2017] [Indexed: 05/11/2023]
Abstract
Aluminum (Al) is the most abundant metal in the earth's crust, but its availability depends on soil pH. Despite this abundance, Al is not considered an essential element and so far no experimental evidence has been put forward for a biological role. In plants and other organisms, Al can have a beneficial or toxic effect, depending on factors such as, metal concentration, the chemical form of Al, growth conditions and plant species. Here we review recent advances in the study of Al in plants at physiological, biochemical and molecular levels, focusing mainly on the beneficial effect of Al in plants (stimulation of root growth, increased nutrient uptake, the increase in enzyme activity, and others). In addition, we discuss the possible mechanisms involved in improving the growth of plants cultivated in soils with acid pH, as well as mechanisms of tolerance to the toxic effect of Al.
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Affiliation(s)
- Emanuel Bojórquez-Quintal
- CONACYT-Laboratorio de Análisis y Diagnóstico del Patrimonio, El Colegio de Michoacán, La Piedad, Mexico
| | - Camilo Escalante-Magaña
- Unidad de Bioquímica y Biología Molecular de Plantas, Centro de Investigación Científica de Yucatán, Mérida, Mexico
| | - Ileana Echevarría-Machado
- Unidad de Bioquímica y Biología Molecular de Plantas, Centro de Investigación Científica de Yucatán, Mérida, Mexico
| | - Manuel Martínez-Estévez
- Unidad de Bioquímica y Biología Molecular de Plantas, Centro de Investigación Científica de Yucatán, Mérida, Mexico
- *Correspondence: Manuel Martínez-Estévez,
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17
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Hu ZM, Zhao XQ, Bao XM, Wang C, Wang W, Zheng L, Lan P, Shen RF. A potential contribution of the less negatively charged cell wall to the high aluminum tolerance of Rhodotorula taiwanensis RS1. Yeast 2016; 33:575-586. [PMID: 27497064 DOI: 10.1002/yea.3182] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2015] [Revised: 07/24/2016] [Accepted: 07/30/2016] [Indexed: 11/09/2022] Open
Abstract
Rhodotorula taiwanensis RS1 (Rt) is a high-aluminum (Al)-tolerant yeast that can survive Al at concentrations up to 200 mM. In this study, we compared Rt with an Al-sensitive congeneric strain, R. mucilaginosa AKU 4812 (Rm) and Al sensitive mutant 1 (alsm1) of Rt, to explore the Al tolerance mechanisms of Rt. The growth of Rm was completely inhibited by 1 mM Al, but that of Rt was not inhibited until Al concentration was more than 70 mM. The growth of alsm1 was inhibited much more by 70 mM and 100 mM Al than that of Rt. Compared with Rm cells, Rt cells accumulated less Al in the cell wall and cytoplasm. A time-course analysis showed that Al was absorbed by Rm cells much more rapidly than by Rt cells when exposed to the same Al concentration. Meanwhile, the Al content of alsm1 was higher than that of Rt. Although the cell wall of Rt was thicker than that of alsm1 and Rm under control and 0.1 mM Al, that of Rt was thinner than that of alsm1 under 70 mM Al despite that their cell walls were thickened. The alcian blue adsorption was lower and cell wall zeta-potential was higher in Rt and alsm1 than in Rm, indicating a less negative charge of cell wall of Rt and alsm1 than that of Rm. Taken together, the less negatively charged cell wall of Rt may restrict the adsorption of cationic Al in cells, potentially contributing to its high Al tolerance. Copyright © 2016 John Wiley & Sons, Ltd.
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Affiliation(s)
- Zhen Min Hu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xue Qiang Zhao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xue Min Bao
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.,School of Energy and Environment, Inner Mongolia University of Science and Technology, Baotou, 014010, China
| | - Chao Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Wei Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Lu Zheng
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Ping Lan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Ren Fang Shen
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
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18
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Li H, Du H, Huang K, Chen X, Liu T, Gao S, Liu H, Tang Q, Rong T, Zhang S. Identification, and Functional and Expression Analyses of the CorA/MRS2/MGT-Type Magnesium Transporter Family in Maize. PLANT & CELL PHYSIOLOGY 2016; 57:1153-68. [PMID: 27084594 DOI: 10.1093/pcp/pcw064] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2015] [Accepted: 03/22/2016] [Indexed: 05/24/2023]
Abstract
Magnesium (Mg(2+)) is an essential macronutrient for plant growth and development, and the CorA/MRS2/MGT-type Mg(2+) transporters play important roles in maintaining Mg(2+) homeostasis in plants. Although the MRS2/MGT genes have been identified in two model plant species, Arabidopsis and rice, a comprehensive analysis of the MRS2/MGT gene family in other plants is lacking. In this work, 12 putative MRS2/MGT genes (ZmMGT1- ZmMGT12) were identified in maize and all of them were classified into five distinct subfamilies by phylogenetic analysis. A complementation assay in the Salmonella typhimurium MM281 strain showed that five representatives of the 12 members possess Mg(2+) transport abilities. Inhibition of ZmMGT protein activity using the hexaamminecobalt (III) (Co-Hex) inhibitor indicated that the ZmMGT protein mediated both low-affinity and high-affinity Mg(2+) transport in maize. A semi-quantitative reverse transcription-PCR (RT-PCR) analysis revealed that eight genes were constitutively expressed in all of the detected tissues, with one being specifically expressed in roots and three having no detectable expression signals. A quantitative RT-PCR analysis showed that some ZmMGT members displayed differential responses to Mg(2+) deficiency and aluminum (Al) stress. Furthermore, root growth inhibition and Mg(2+) accumulation analyses in two maize inbred lines, which conferred different levels of Al tolerance, revealed that ZmMGT proteins contributed to the Al resistance of the Al tolerance genotype. We hypothesize that ZmMGT family members function as Mg(2+) transporters and may play a role in linking Mg(2+) deficiency and Al stress responses. Our results will be valuable in a further analysis of the important biological functions of ZmMGT members in maize.
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Affiliation(s)
- Hongyou Li
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Hanmei Du
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Kaifeng Huang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Xin Chen
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Tianyu Liu
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Shibin Gao
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Hailan Liu
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Qilin Tang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Tingzhao Rong
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
| | - Suzhi Zhang
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest China of Agricultural Department, Ministry of Agriculture, Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China
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19
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Alcântara BK, Machemer-Noonan K, Silva Júnior FG, Azevedo RA. Dry Priming of Maize Seeds Reduces Aluminum Stress. PLoS One 2015; 10:e0145742. [PMID: 26714286 PMCID: PMC4694655 DOI: 10.1371/journal.pone.0145742] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2015] [Accepted: 12/08/2015] [Indexed: 12/05/2022] Open
Abstract
Aluminum (Al) toxicity is directly related to acidic soils and substantially limits maize yield. Earlier studies using hormones and other substances to treat the seeds of various crops have been carried out with the aim of inducing tolerance to abiotic stress, especially chilling, drought and salinity. However, more studies regarding the effects of seed treatments on the induction of Al tolerance are necessary. In this study, two independent experiments were performed to determine the effect of ascorbic acid (AsA) seed treatment on the tolerance response of maize to acidic soil and Al stress. In the first experiment (greenhouse), the AsA seed treatment was tested in B73 (Al-sensitive genotype). This study demonstrates the potential of AsA for use as a pre-sowing seed treatment (seed priming) because this metabolite increased root and shoot growth under acidic and Al stress conditions. In the second test, the evidence from field experiments using an Al-sensitive genotype (Mo17) and an Al-tolerant genotype (DA) suggested that prior AsA seed treatment increased the growth of both genotypes. Enhanced productivity was observed for DA under Al stress after priming the seeds. Furthermore, the AsA treatment decreased the activity of oxidative stress-related enzymes in the DA genotype. In this study, remarkable effects using AsA seed treatment in maize were observed, demonstrating the potential future use of AsA in seed priming.
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Affiliation(s)
- Berenice Kussumoto Alcântara
- Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brasil
| | - Katja Machemer-Noonan
- Center for Applied Plant Sciences, Rightmire Hall, The Ohio State University, Columbus, Ohio, United States of America
| | - Francides Gomes Silva Júnior
- Departamento de Ciências Florestais, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brasil
| | - Ricardo Antunes Azevedo
- Departamento de Genética, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brasil
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20
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Anjum NA, Hasanuzzaman M, Hossain MA, Thangavel P, Roychoudhury A, Gill SS, Rodrigo MAM, Adam V, Fujita M, Kizek R, Duarte AC, Pereira E, Ahmad I. Jacks of metal/metalloid chelation trade in plants-an overview. FRONTIERS IN PLANT SCIENCE 2015; 6:192. [PMID: 25883598 PMCID: PMC4382971 DOI: 10.3389/fpls.2015.00192] [Citation(s) in RCA: 69] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Accepted: 03/10/2015] [Indexed: 05/18/2023]
Abstract
Varied environmental compartments including soils are being contaminated by a myriad toxic metal(loid)s (hereafter termed as "metal/s") mainly through anthropogenic activities. These metals may contaminate food chain and bring irreparable consequences in human. Plant-based approach (phytoremediation) stands second to none among bioremediation technologies meant for sustainable cleanup of soils/sites with metal-contamination. In turn, the capacity of plants to tolerate potential consequences caused by the extracted/accumulated metals decides the effectiveness and success of phytoremediation system. Chelation is among the potential mechanisms that largely govern metal-tolerance in plant cells by maintaining low concentrations of free metals in cytoplasm. Metal-chelation can be performed by compounds of both thiol origin (such as GSH, glutathione; PCs, phytochelatins; MTs, metallothioneins) and non-thiol origin (such as histidine, nicotianamine, organic acids). This paper presents an appraisal of recent reports on both thiol and non-thiol compounds in an effort to shed light on the significance of these compounds in plant-metal tolerance, as well as to provide scientific clues for the advancement of metal-phytoextraction strategies.
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Affiliation(s)
- Naser A. Anjum
- Centre for Environmental and Marine Studies and Department of Chemistry, University of AveiroAveiro, Portugal
| | - Mirza Hasanuzzaman
- Department of Agronomy, Faculty of Agriculture, Sher-e-Bangla Agricultural UniversityDhaka, Bangladesh
| | - Mohammad A. Hossain
- Department of Genetics and Plant Breeding, Bangladesh Agricultural UniversityMymensingh, Bangladesh
| | - Palaniswamy Thangavel
- Department of Environmental Science, School of Life Sciences, Periyar UniversitySalem, India
| | - Aryadeep Roychoudhury
- Post Graduate Department of Biotechnology, St. Xavier's College (Autonomous)Kolkata, India
| | - Sarvajeet S. Gill
- Stress Physiology and Molecular Biology Lab, Centre for Biotechnology, Maharshi Dayanand UniversityRohtak, India
| | - Miguel A. Merlos Rodrigo
- Central European Institute of Technology, Brno University of TechnologyBrno, Czech Republic
- Department of Chemistry and Biochemistry, Mendel University in BrnoBrno, Czech Republic
| | - Vojtěch Adam
- Central European Institute of Technology, Brno University of TechnologyBrno, Czech Republic
- Department of Chemistry and Biochemistry, Mendel University in BrnoBrno, Czech Republic
| | - Masayuki Fujita
- Laboratory of Plant Stress Responses, Faculty of Agriculture, Kagawa UniversityMiki-cho, Japan
| | - Rene Kizek
- Central European Institute of Technology, Brno University of TechnologyBrno, Czech Republic
- Department of Chemistry and Biochemistry, Mendel University in BrnoBrno, Czech Republic
| | - Armando C. Duarte
- Centre for Environmental and Marine Studies and Department of Chemistry, University of AveiroAveiro, Portugal
| | - Eduarda Pereira
- Centre for Environmental and Marine Studies and Department of Chemistry, University of AveiroAveiro, Portugal
| | - Iqbal Ahmad
- Centre for Environmental and Marine Studies and Department of Chemistry, University of AveiroAveiro, Portugal
- Centre for Environmental and Marine Studies and Department of Biology, University of AveiroAveiro, Portugal
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21
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Atkinson JA, Wingen LU, Griffiths M, Pound MP, Gaju O, Foulkes MJ, Le Gouis J, Griffiths S, Bennett MJ, King J, Wells DM. Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2283-92. [PMID: 25740921 PMCID: PMC4407652 DOI: 10.1093/jxb/erv006] [Citation(s) in RCA: 106] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Revised: 12/17/2014] [Accepted: 12/19/2014] [Indexed: 05/18/2023]
Abstract
Seedling root traits of wheat (Triticum aestivum L.) have been shown to be important for efficient establishment and linked to mature plant traits such as height and yield. A root phenotyping pipeline, consisting of a germination paper-based screen combined with image segmentation and analysis software, was developed and used to characterize seedling traits in 94 doubled haploid progeny derived from a cross between the winter wheat cultivars Rialto and Savannah. Field experiments were conducted to measure mature plant height, grain yield, and nitrogen (N) uptake in three sites over 2 years. In total, 29 quantitative trait loci (QTLs) for seedling root traits were identified. Two QTLs for grain yield and N uptake co-localize with root QTLs on chromosomes 2B and 7D, respectively. Of the 29 root QTLs identified, 11 were found to co-localize on 6D, with four of these achieving highly significant logarithm of odds scores (>20). These results suggest the presence of a major-effect gene regulating seedling root vigour/growth on chromosome 6D.
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Affiliation(s)
- Jonathan A Atkinson
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Luzie U Wingen
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Marcus Griffiths
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Michael P Pound
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Oorbessy Gaju
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - M John Foulkes
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Jacques Le Gouis
- INRA, UMR 1095 Génétique, Diversité et Ecophysiologie des Céréales, 63100 Clermont-Ferrand, France
| | - Simon Griffiths
- Department of Crop Genetics, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Malcolm J Bennett
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Julie King
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
| | - Darren M Wells
- Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, Sutton Bonington LE12 5RD, UK
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Kochian LV, Piñeros MA, Liu J, Magalhaes JV. Plant Adaptation to Acid Soils: The Molecular Basis for Crop Aluminum Resistance. ANNUAL REVIEW OF PLANT BIOLOGY 2015; 66:571-98. [PMID: 25621514 DOI: 10.1146/annurev-arplant-043014-114822] [Citation(s) in RCA: 453] [Impact Index Per Article: 50.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Aluminum (Al) toxicity in acid soils is a significant limitation to crop production worldwide, as approximately 50% of the world's potentially arable soil is acidic. Because acid soils are such an important constraint to agriculture, understanding the mechanisms and genes conferring resistance to Al toxicity has been a focus of intense research interest in the decade since the last article on crop acid soil tolerance was published in this journal. An impressive amount of progress has been made during that time that has greatly increased our understanding of the diversity of Al resistance genes and mechanisms, how resistance gene expression is regulated and triggered by Al and Al-induced signals, and how the proteins encoded by these genes function and are regulated. This review examines the state of our understanding of the physiological, genetic, and molecular bases for crop Al tolerance, looking at the novel Al resistance genes and mechanisms that have been identified over the past ten years. Additionally, it examines how the integration of molecular and genetic analyses of crop Al resistance is starting to be exploited for the improvement of crop plants grown on acid soils via both molecular-assisted breeding and biotechnology approaches.
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Affiliation(s)
- Leon V Kochian
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, New York 14853; , ,
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Zhu XF, Wan JX, Sun Y, Shi YZ, Braam J, Li GX, Zheng SJ. Xyloglucan Endotransglucosylase-Hydrolase17 Interacts with Xyloglucan Endotransglucosylase-Hydrolase31 to Confer Xyloglucan Endotransglucosylase Action and Affect Aluminum Sensitivity in Arabidopsis. PLANT PHYSIOLOGY 2014; 165:1566-1574. [PMID: 24948835 PMCID: PMC4119039 DOI: 10.1104/pp.114.243790] [Citation(s) in RCA: 65] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2014] [Accepted: 06/16/2014] [Indexed: 05/20/2023]
Abstract
Previously, we reported that although the Arabidopsis (Arabidopsis thaliana) Xyloglucan Endotransglucosylase-Hydrolase31 (XTH31) has predominately xyloglucan endohydrolase activity in vitro, loss of XTH31 results in remarkably reduced in vivo xyloglucan endotransglucosylase (XET) action and enhanced Al resistance. Here, we report that XTH17, predicted to have XET activity, binds XTH31 in yeast (Saccharomyces cerevisiae) two-hybrid and coimmunoprecipitations assays and that this interaction may be required for XTH17 XET activity in planta. XTH17 and XTH31 may be colocalized in plant cells because tagged XTH17 fusion proteins, like XTH31 fusion proteins, appear to target to the plasma membrane. XTH17 expression, like that of XTH31, was substantially reduced in the presence of aluminum (Al), even at concentrations as low as 10 µm for 24 h or 25 µm for just 30 min. Agrobacterium tumefaciens-mediated transfer DNA insertion mutant of XTH17, xth17, showed low XET action and had moderately shorter roots than the wild type but was more Al resistant than the wild type. Similar to xth31, xth17 had low hemicellulose content and retained less Al in the cell wall. These data suggest a model whereby XTH17 and XTH31 may exist as a dimer at the plasma membrane to confer in vivo XET action, which modulates cell wall Al-binding capacity and thereby affects Al sensitivity in Arabidopsis.
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Affiliation(s)
- Xiao Fang Zhu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Jiang Xue Wan
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Ying Sun
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Yuan Zhi Shi
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Janet Braam
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Gui Xin Li
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
| | - Shao Jian Zheng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences (X.F.Z., J.X.W., Y.S, S.J.Z.), and College of Agronomy and Biotechnology (G.X.L.), Zhejiang University, Hangzhou 310058, China;Department of Plant Physiology and Nutrition, Tea Research Institute, Chinese Academy of Agricultural Sciences, the Key Laboratory of Tea Chemical Engineering, Ministry of Agriculture, Hangzhou 310008, China (Y.Z.S.); andBiochemistry and Cell Biology, Rice University, Houston, Texas 77005 (J.B.)
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Nunes-Nesi A, Santos Brito D, Inostroza-Blancheteau C, Fernie AR, Araújo WL. The complex role of mitochondrial metabolism in plant aluminum resistance. TRENDS IN PLANT SCIENCE 2014; 19:399-407. [PMID: 24462392 DOI: 10.1016/j.tplants.2013.12.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Revised: 12/16/2013] [Accepted: 12/19/2013] [Indexed: 05/18/2023]
Abstract
The majority of soils in tropical and subtropical regions are acidic, rendering the soil a major limitation to plant growth and food production in many developing countries. High concentrations of soluble aluminum cations, particularly Al3+, are largely responsible for reducing root elongation and disrupting nutrient and water uptake. Two mechanisms, namely, the exclusion mechanism and tolerance mechanism, have been proposed to govern Al3+ resistance in plants. Both mechanisms are related to mitochondrial activity as well as to mitochondrial metabolism and organic acid transport. Here, we review the considerable progress that has been made towards developing an understanding of the physiological role of mitochondria in the aluminum response and discuss the potential for using this knowledge in next-generation engineering.
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Affiliation(s)
- Adriano Nunes-Nesi
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
| | - Danielle Santos Brito
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil
| | - Claudio Inostroza-Blancheteau
- Núcleo de Investigación en Producción Alimentaría, Facultad de Recursos Naturales, Escuela de Agronomía, Universidad Católica de Temuco, P.O. Box 56-D, Temuco, Chile
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
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Guimaraes CT, Simoes CC, Pastina MM, Maron LG, Magalhaes JV, Vasconcellos RCC, Guimaraes LJM, Lana UGP, Tinoco CFS, Noda RW, Jardim-Belicuas SN, Kochian LV, Alves VMC, Parentoni SN. Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan. BMC Genomics 2014; 15:153. [PMID: 24564817 PMCID: PMC4007696 DOI: 10.1186/1471-2164-15-153] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Accepted: 01/29/2014] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND Aluminum (Al) toxicity is an important limitation to food security in tropical and subtropical regions. High Al saturation on acid soils limits root development, reducing water and nutrient uptake. In addition to naturally occurring acid soils, agricultural practices may decrease soil pH, leading to yield losses due to Al toxicity. Elucidating the genetic and molecular mechanisms underlying maize Al tolerance is expected to accelerate the development of Al-tolerant cultivars. RESULTS Five genomic regions were significantly associated with Al tolerance, using 54,455 SNP markers in a recombinant inbred line population derived from Cateto Al237. Candidate genes co-localized with Al tolerance QTLs were further investigated. Near-isogenic lines (NILs) developed for ZmMATE2 were as Al-sensitive as the recurrent line, indicating that this candidate gene was not responsible for the Al tolerance QTL on chromosome 5, qALT5. However, ZmNrat1, a maize homolog to OsNrat1, which encodes an Al(3+) specific transporter previously implicated in rice Al tolerance, was mapped at ~40 Mbp from qALT5. We demonstrate for the first time that ZmNrat1 is preferentially expressed in maize root tips and is up-regulated by Al, similarly to OsNrat1 in rice, suggesting a role of this gene in maize Al tolerance. The strongest-effect QTL was mapped on chromosome 6 (qALT6), within a 0.5 Mbp region where three copies of the Al tolerance gene, ZmMATE1, were found in tandem configuration. qALT6 was shown to increase Al tolerance in maize; the qALT6-NILs carrying three copies of ZmMATE1 exhibited a two-fold increase in Al tolerance, and higher expression of ZmMATE1 compared to the Al sensitive recurrent parent. Interestingly, a new source of Al tolerance via ZmMATE1 was identified in a Brazilian elite line that showed high expression of ZmMATE1 but carries a single copy of ZmMATE1. CONCLUSIONS High ZmMATE1 expression, controlled either by three copies of the target gene or by an unknown molecular mechanism, is responsible for Al tolerance mediated by qALT6. As Al tolerant alleles at qALT6 are rare in maize, marker-assisted introgression of this QTL is an important strategy to improve maize adaptation to acid soils worldwide.
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Affiliation(s)
- Claudia T Guimaraes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Christiano C Simoes
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Maria Marta Pastina
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Lyza G Maron
- />Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY USA
| | - Jurandir V Magalhaes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Renato CC Vasconcellos
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Lauro JM Guimaraes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Ubiraci GP Lana
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Carlos FS Tinoco
- />Departamento de Biologia, Centro Universitário de Sete Lagoas, Sete Lagoas, MG Brazil
| | - Roberto W Noda
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Silvia N Jardim-Belicuas
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Leon V Kochian
- />Robert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture – Agriculture Research Service, Cornell University, Ithaca, NY USA
| | - Vera MC Alves
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Sidney N Parentoni
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
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Tahara K, Hashida K, Otsuka Y, Ohara S, Kojima K, Shinohara K. Identification of a hydrolyzable tannin, oenothein B, as an aluminum-detoxifying ligand in a highly aluminum-resistant tree, Eucalyptus camaldulensis. PLANT PHYSIOLOGY 2014; 164:683-93. [PMID: 24381064 PMCID: PMC3912098 DOI: 10.1104/pp.113.222885] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 12/27/2013] [Indexed: 05/20/2023]
Abstract
Eucalyptus camaldulensis is a tree species in the Myrtaceae that exhibits extremely high resistance to aluminum (Al). To explore a novel mechanism of Al resistance in plants, we examined the Al-binding ligands in roots and their role in Al resistance of E. camaldulensis. We identified a novel type of Al-binding ligand, oenothein B, which is a dimeric hydrolyzable tannin with many adjacent phenolic hydroxyl groups. Oenothein B was isolated from root extracts of E. camaldulensis by reverse-phase high-performance liquid chromatography and identified by nuclear magnetic resonance and mass spectrometry analyses. Oenothein B formed water-soluble or -insoluble complexes with Al depending on the ratio of oenothein B to Al and could bind at least four Al ions per molecule. In a bioassay using Arabidopsis (Arabidopsis thaliana), Al-induced inhibition of root elongation was completely alleviated by treatment with exogenous oenothein B, which indicated the capability of oenothein B to detoxify Al. In roots of E. camaldulensis, Al exposure enhanced the accumulation of oenothein B, especially in EDTA-extractable forms, which likely formed complexes with Al. Oenothein B was localized mostly in the root symplast, in which a considerable amount of Al accumulated. In contrast, oenothein B was not detected in three Al-sensitive species, comprising the Myrtaceae tree Melaleuca bracteata, Populus nigra, and Arabidopsis. Oenothein B content in roots of five tree species was correlated with their Al resistance. Taken together, these results suggest that internal detoxification of Al by the formation of complexes with oenothein B in roots likely contributes to the high Al resistance of E. camaldulensis.
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Affiliation(s)
| | - Koh Hashida
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan (K.T., K.H., Y.O., S.O., K.S.)
- Asian Natural Environmental Science Center, University of Tokyo, Bunkyo-ku, Tokyo 113–8657, Japan (K.K.); and
- Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102–0075, Japan (K.K.)
| | - Yuichiro Otsuka
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan (K.T., K.H., Y.O., S.O., K.S.)
- Asian Natural Environmental Science Center, University of Tokyo, Bunkyo-ku, Tokyo 113–8657, Japan (K.K.); and
- Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102–0075, Japan (K.K.)
| | - Seiji Ohara
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan (K.T., K.H., Y.O., S.O., K.S.)
- Asian Natural Environmental Science Center, University of Tokyo, Bunkyo-ku, Tokyo 113–8657, Japan (K.K.); and
- Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102–0075, Japan (K.K.)
| | - Katsumi Kojima
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan (K.T., K.H., Y.O., S.O., K.S.)
- Asian Natural Environmental Science Center, University of Tokyo, Bunkyo-ku, Tokyo 113–8657, Japan (K.K.); and
- Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102–0075, Japan (K.K.)
| | - Kenji Shinohara
- Forestry and Forest Products Research Institute, Tsukuba, Ibaraki 305–8687, Japan (K.T., K.H., Y.O., S.O., K.S.)
- Asian Natural Environmental Science Center, University of Tokyo, Bunkyo-ku, Tokyo 113–8657, Japan (K.K.); and
- Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Chiyoda-ku, Tokyo 102–0075, Japan (K.K.)
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Fang X, Zhao Y, Ma Q, Huang Y, Wang P, Zhang J, Nian H, Yang C. Identification and comparative analysis of cadmium tolerance-associated miRNAs and their targets in two soybean genotypes. PLoS One 2013; 8:e81471. [PMID: 24363811 PMCID: PMC3867309 DOI: 10.1371/journal.pone.0081471] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 10/14/2013] [Indexed: 11/19/2022] Open
Abstract
MicroRNAs (miRNAs) play crucial roles in regulating the expression of various stress responses genes in plants. To investigate soybean (Glycine max) miRNAs involved in the response to cadmium (Cd), microarrays containing 953 unique miRNA probes were employed to identify differences in the expression patterns of the miRNAs between different genotypes, Huaxia3 (HX3, Cd-tolerant) and Zhonghuang24 (ZH24, Cd-sensitive). Twenty six Cd-responsive miRNAs were identified in total. Among them, nine were detected in both cultivars, while five were expressed only in HX3 and 12 were only in ZH24. The expression of 16 miRNAs was tested by qRT-PCR and most of the identified miRNAs were found to have similar expression patterns with microarray. Three hundred and seventy six target genes were identified for 204 miRNAs from a mixture degradome library, which was constructed from the root of HX3 and ZH24 with or without Cd treatment. Fifty five genes were identified to be cleaved by 14 Cd-responsive miRNAs. Gene ontology (GO) annotations showed that these target transcripts are implicated in a broad range of biological processes. In addition, the expression patterns of ten target genes were validated by qRT-PCR. The characterization of the miRNAs and the associated target genes in response to Cd exposure provides a framework for understanding the molecular mechanism of heavy metal tolerance in plants.
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Affiliation(s)
- Xiaolong Fang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Yunyun Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Qibin Ma
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Yian Huang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Peng Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Jie Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Hai Nian
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
| | - Cunyi Yang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, South China Agricultural University, Guangzhou, China
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Cai S, Wu D, Jabeen Z, Huang Y, Huang Y, Zhang G. Genome-wide association analysis of aluminum tolerance in cultivated and Tibetan wild barley. PLoS One 2013; 8:e69776. [PMID: 23922796 PMCID: PMC3724880 DOI: 10.1371/journal.pone.0069776] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Accepted: 06/05/2013] [Indexed: 11/19/2022] Open
Abstract
Tibetan wild barley (Hordeum vulgare L. ssp. spontaneum), originated and grown in harsh enviroNment in Tibet, is well-known for its rich germpalsm with high tolerance to abiotic stresses. However, the genetic variation and genes involved in Al tolerance are not totally known for the wild barley. In this study, a genome-wide association analysis (GWAS) was performed by using four root parameters related with Al tolerance and 469 DArT markers on 7 chromosomes within or across 110 Tibetan wild accessions and 56 cultivated cultivars. Population structure and cluster analysis revealed that a wide genetic diversity was present in Tibetan wild barley. Linkage disequilibrium (LD) decayed more rapidly in Tibetan wild barley (9.30 cM) than cultivated barley (11.52 cM), indicating that GWAS may provide higher resolution in the Tibetan group. Two novel Tibetan group-specific loci, bpb-9458 and bpb-8524 were identified, which were associated with relative longest root growth (RLRG), located at 2H and 7H on barely genome, and could explain 12.9% and 9.7% of the phenotypic variation, respectively. Moreover, a common locus bpb-6949, localized 0.8 cM away from a candidate gene HvMATE, was detected in both wild and cultivated barleys, and showed significant association with total root growth (TRG). The present study highlights that Tibetan wild barley could provide elite germplasm novel genes for barley Al-tolerant improvement.
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Affiliation(s)
- Shengguan Cai
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Dezhi Wu
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Zahra Jabeen
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Yuqing Huang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Yechang Huang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Guoping Zhang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
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Arunakumara KKIU, Walpola BC, Yoon MH. Aluminum toxicity and tolerance mechanism in cereals and legumes — A review. ACTA ACUST UNITED AC 2013. [DOI: 10.1007/s13765-012-2314-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Yang LT, Qi YP, Jiang HX, Chen LS. Roles of organic acid anion secretion in aluminium tolerance of higher plants. BIOMED RESEARCH INTERNATIONAL 2012; 2013:173682. [PMID: 23509687 PMCID: PMC3591170 DOI: 10.1155/2013/173682] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2012] [Revised: 10/04/2012] [Accepted: 10/30/2012] [Indexed: 01/28/2023]
Abstract
Approximately 30% of the world's total land area and over 50% of the world's potential arable lands are acidic. Furthermore, the acidity of the soils is gradually increasing as a result of the environmental problems including some farming practices and acid rain. At mildly acidic or neutral soils, aluminium (Al) occurs primarily as insoluble deposits and is essentially biologically inactive. However, in many acidic soils throughout the tropics and subtropics, Al toxicity is a major factor limiting crop productivity. The Al-induced secretion of organic acid (OA) anions, mainly citrate, oxalate, and malate, from roots is the best documented mechanism of Al tolerance in higher plants. Increasing evidence shows that the Al-induced secretion of OA anions may be related to the following several factors, including (a) anion channels or transporters, (b) internal concentrations of OA anions in plant tissues, (d) temperature, (e) root plasma membrane (PM) H(+)-ATPase, (f) magnesium (Mg), and (e) phosphorus (P). Genetically modified plants and cells with higher Al tolerance by overexpressing genes for the secretion and the biosynthesis of OA anions have been obtained. In addition, some aspects needed to be further studied are also discussed.
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Affiliation(s)
- Lin-Tong Yang
- Department of Agricultural Resources and Environmental Sciences, College of Resources and Environmental Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yi-Ping Qi
- Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou 350001, China
| | - Huan-Xin Jiang
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Department of Life Sciences, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Li-Song Chen
- Department of Agricultural Resources and Environmental Sciences, College of Resources and Environmental Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Department of Horticulture, College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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Vaz FAS, da Silva PA, Passos LP, Heller M, Micke GA, Costa ACO, de Oliveira MAL. Optimisation of a capillary zone electrophoresis methodology for simultaneous analysis of organic aliphatic acids in extracts of Brachiaria brizantha. PHYTOCHEMICAL ANALYSIS : PCA 2012; 23:569-575. [PMID: 22407535 DOI: 10.1002/pca.2355] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2011] [Revised: 01/13/2012] [Accepted: 01/18/2012] [Indexed: 05/31/2023]
Abstract
INTRODUCTION Aluminum toxicity is commonly verified in acidic soils, and poses a severe limitation to plant growth and development. Therefore, Al complexation by the root system mucilage, Al complexation by organic compounds that are exuded by the roots and internal metabolic processes must be monitored by organic acids (OA), since they play a central role in these aluminum tolerance mechanisms. OBJECTIVE To optimise a capillary zone electrophoresis method able to perform simultaneous separation of acetic, citric, formic, lactic, malic, oxalic, pyruvic, succinic, tartaric and aspartic acid in plant extract solutions. METHODOLOGY Method optimisation was achieved by a chemometric approach through experimental designs. The optimal condition found was: 20 mmol/L phthalic acid buffer; 0.8 mmol/L cetyltrimethyl-ammonium bromide; pH 3.4 adjusted with tris(hydroxymethyl)aminomethane (around 16 mmol/L); -15 kV of voltage; 25 °C of cartridge temperature; indirect ultraviolet detection at 240 nm; and 25 mbar injection for 2 s, within an analysis time of 4 min. RESULTS As a repeatability test of the optimal condition, 30 replicates were carried out with the same working electrolyte, where the relative standard deviation of each peak ranged from 0.081 to 0.36% (for migration time) and from 2.4 to 4.6% (for peak area). CONCLUSION The methodology was successfully applied to simultaneously determine citric, malic and aspartic acid in roots and leaves extract solutions of Brachiaria brizantha, demonstrating its usefulness to study aluminum tolerance.
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Mattiello L, da Silva FR, Menossi M. Linking microarray data to QTLs highlights new genes related to Al tolerance in maize. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2012; 191-192:8-15. [PMID: 22682560 DOI: 10.1016/j.plantsci.2012.04.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2012] [Revised: 04/14/2012] [Accepted: 04/18/2012] [Indexed: 06/01/2023]
Abstract
The presence of aluminum (Al) is one of the main factors limiting crop yield in Brazil and worldwide. Plant responses to Al are complex, and the use of techniques such as microarrays can facilitate their comprehension. In a previous work, we evaluated the transcriptome of two maize lines, Cat100-6 and S1587-17, after growing the plants for 1 or 3 days in acid soil (pH 4.1) or alkaline soil with Ca(OH)₂ (pH 5.5), and we identified genes that likely contribute to Al tolerance. The mapping of these genes to the chromosomes allowed the identification of the genes that are localized in maize QTLs previously reported in the literature as associated with the tolerant phenotype. We were able to map genes encoding proteins possibly involved with acid soil tolerance, such as the ones encoding an RNA binding protein, a protease inhibitor, replication factors, xyloglucan endotransglycosylase and cyclins, inside QTLs known to be important for the Al-tolerant phenotype.
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Affiliation(s)
- Lucia Mattiello
- Laboratório Genoma Funcional, Departamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP, Brazil.
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Simões CC, Melo JO, Magalhaes JV, Guimarães CT. Genetic and molecular mechanisms of aluminum tolerance in plants. GENETICS AND MOLECULAR RESEARCH 2012; 11:1949-57. [PMID: 22869550 DOI: 10.4238/2012.july.19.14] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Aluminum (Al) toxicity restricts root growth and agricultural yield in acid soils, which constitute approximately 40% of the potentially arable lands worldwide. The two main mechanisms of Al tolerance in plants are internal detoxification of Al and its exclusion from root cells. Genes encoding membrane transporters and accessory transcription factors, as well as cis-elements that enhance gene expression, are involved in Al tolerance in plants; thus studies of these genes and accessory factors should be the focus of molecular breeding efforts aimed at improving Al tolerance in crops. In this review, we describe the main genetic and molecular studies that led to the identification and cloning of genes associated with Al tolerance in plants. We include recent findings on the regulation of genes associated with Al tolerance. Understanding the genetic, molecular, and physiological aspects of Al tolerance in plants is important for generating cultivars adapted to acid soils, thereby contributing to food security worldwide.
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Affiliation(s)
- C C Simões
- Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brasil
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Ligaba A, Maron L, Shaff J, Kochian L, Piñeros M. Maize ZmALMT2 is a root anion transporter that mediates constitutive root malate efflux. PLANT, CELL & ENVIRONMENT 2012; 35:1185-200. [PMID: 22211473 DOI: 10.1111/j.1365-3040.2011.02479.x] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Root efflux of organic acid anions underlies a major mechanism of plant aluminium (Al) tolerance on acid soils. This efflux is mediated by transporters of the Al-activated malate transporter (ALMT) or the multi-drug and toxin extrusion (MATE) families. ZmALMT2 was previously suggested to be involved in Al tolerance based on joint association-linkage mapping for maize Al tolerance. In the current study, we functionally characterized ZmALMT2 by heterologously expressing it in Xenopus laevis oocytes and transgenic Arabidopsis. In oocytes, ZmALMT2 mediated an Al-independent electrogenic transport product of organic and inorganic anion efflux. Ectopic overexpression of ZmALMT2 in an Al-hypersensitive Arabidopsis KO/KD line lacking the Al tolerance genes, AtALMT1 and AtMATE, resulted in Al-independent constitutive root malate efflux which partially restored the Al tolerance phenotype. The lack of correlation between ZmALMT2 expression and Al tolerance (e.g., expression not localized to the root tip, not up-regulated by Al, and higher in sensitive versus tolerance maize lines) also led us to question ZmALMT2's role in Al tolerance. The functional properties of the ZmALMT2 transporter presented here, along with the gene expression data, suggest that ZmALMT2 is not involved in maize Al tolerance but, rather, may play a role in mineral nutrient acquisition and transport.
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Affiliation(s)
- Ayalew Ligaba
- Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, New York 14853, USA
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TISTAMA RADITE, WIDYASTUTI UTUT, SOPANDIE DIDY, YOKOTA AKIHO, AKASHI KINYA, SUHARSONO. Physiological and Biochemical Responses to Aluminum Stress in the Root of a Biodiesel Plant Jatropha curcas L. HAYATI JOURNAL OF BIOSCIENCES 2012. [DOI: 10.4308/hjb.19.1.37] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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Suppression of phospholipase Dγs confers increased aluminum resistance in Arabidopsis thaliana. PLoS One 2011; 6:e28086. [PMID: 22163277 PMCID: PMC3233545 DOI: 10.1371/journal.pone.0028086] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2010] [Accepted: 10/31/2011] [Indexed: 01/26/2023] Open
Abstract
Aluminum (Al) toxicity is the major stress in acidic soil that comprises about 50% of the world's arable land. The complex molecular mechanisms of Al toxicity have yet to be fully determined. As a barrier to Al entrance, plant cell membranes play essential roles in plant interaction with Al, and lipid composition and membrane integrity change significantly under Al stress. Here, we show that phospholipase Dγs (PLDγs) are induced by Al stress and contribute to Al-induced membrane lipid alterations. RNAi suppression of PLDγ resulted in a decrease in both PLDγ1 and PLDγ2 expression and an increase in Al resistance. Genetic disruption of PLDγ1 also led to an increased tolerance to Al while knockout of PLDγ2 did not. Both RNAi-suppressed and pldγ1-1 mutants displayed better root growth than wild-type under Al stress conditions, and PLDγ1-deficient plants had less accumulation of callose, less oxidative damage, and less lipid peroxidation compared to wild-type plants. Most phospholipids and glycolipids were altered in response to Al treatment of wild-type plants, whereas fewer changes in lipids occurred in response to Al stress in PLDγ mutant lines. Our results suggest that PLDγs play a role in membrane lipid modulation under Al stress and that high activities of PLDγs negatively modulate plant tolerance to Al.
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Aluminium-induced changes in root epidermal cell patterning, a distinctive feature of hyperresistance to Al in Brachiaria decumbens. J Inorg Biochem 2011; 105:1477-83. [DOI: 10.1016/j.jinorgbio.2011.07.011] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Revised: 07/19/2011] [Accepted: 07/20/2011] [Indexed: 01/18/2023]
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Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR. Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping. PLoS Genet 2011; 7:e1002221. [PMID: 21829395 PMCID: PMC3150440 DOI: 10.1371/journal.pgen.1002221] [Citation(s) in RCA: 236] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2011] [Accepted: 06/21/2011] [Indexed: 01/22/2023] Open
Abstract
Aluminum (Al) toxicity is a primary limitation to crop productivity on acid soils, and rice has been demonstrated to be significantly more Al tolerant than other cereal crops. However, the mechanisms of rice Al tolerance are largely unknown, and no genes underlying natural variation have been reported. We screened 383 diverse rice accessions, conducted a genome-wide association (GWA) study, and conducted QTL mapping in two bi-parental populations using three estimates of Al tolerance based on root growth. Subpopulation structure explained 57% of the phenotypic variation, and the mean Al tolerance in Japonica was twice that of Indica. Forty-eight regions associated with Al tolerance were identified by GWA analysis, most of which were subpopulation-specific. Four of these regions co-localized with a priori candidate genes, and two highly significant regions co-localized with previously identified QTLs. Three regions corresponding to induced Al-sensitive rice mutants (ART1, STAR2, Nrat1) were identified through bi-parental QTL mapping or GWA to be involved in natural variation for Al tolerance. Haplotype analysis around the Nrat1 gene identified susceptible and tolerant haplotypes explaining 40% of the Al tolerance variation within the aus subpopulation, and sequence analysis of Nrat1 identified a trio of non-synonymous mutations predictive of Al sensitivity in our diversity panel. GWA analysis discovered more phenotype-genotype associations and provided higher resolution, but QTL mapping identified critical rare and/or subpopulation-specific alleles not detected by GWA analysis. Mapping using Indica/Japonica populations identified QTLs associated with transgressive variation where alleles from a susceptible aus or indica parent enhanced Al tolerance in a tolerant Japonica background. This work supports the hypothesis that selectively introgressing alleles across subpopulations is an efficient approach for trait enhancement in plant breeding programs and demonstrates the fundamental importance of subpopulation in interpreting and manipulating the genetics of complex traits in rice.
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Affiliation(s)
- Adam N. Famoso
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America
| | - Keyan Zhao
- Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, United States of America
| | - Randy T. Clark
- Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, US Department of Agriculture, Cornell University, Ithaca, New York, United States of America
| | - Chih-Wei Tung
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America
| | - Mark H. Wright
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America
- Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, United States of America
| | - Carlos Bustamante
- Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York, United States of America
| | - Leon V. Kochian
- Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, US Department of Agriculture, Cornell University, Ithaca, New York, United States of America
| | - Susan R. McCouch
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America
- * E-mail:
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Garzón T, Gunsé B, Moreno AR, Tomos AD, Barceló J, Poschenrieder C. Aluminium-induced alteration of ion homeostasis in root tip vacuoles of two maize varieties differing in Al tolerance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2011; 180:709-715. [PMID: 21421422 DOI: 10.1016/j.plantsci.2011.01.022] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2010] [Revised: 01/17/2011] [Accepted: 01/28/2011] [Indexed: 05/30/2023]
Abstract
Root elongation is a primary target of Al toxicity in plants. The objective of this study was to see whether Al-induced disturbance of ion homeostasis is related to the inhibition of root elongation. For this purpose, root growth rate, free cytoplasmic calcium (Ca²+) and vacuolar content of phosphate (P(i)), potassium (K+), nitrate (NO₃⁻) and malate, as well as malate and citrate exudation and nitrate reductase activity were analysed in tips of two Zea mays L. varieties differing in Al resistance. Aluminium treatment affected root growth and cytoplasmic Ca²+ in the Al sensitive variety Bakero, but not in the Al tolerant variety Sikuani. However, both varieties suffered Al-induced decrease of vacuolar K+, and phosphate concentrations. Vacuolar malate concentrations were more affected by Al in Bakero than in Sikuani. Vacuolar nitrate concentrations increased upon Al exposure in both varieties. Only in Sikuani rhizosphere, pH slightly increased upon Al exposure. Our data are consistent with the hypothesis that disturbance of Ca²+ homeostasis is an early event in the Al toxicity syndrome. However, Al-induced alterations of the root tip homeostasis of major ions seem unrelated to Al-induced inhibition of root elongation.
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Affiliation(s)
- Teresa Garzón
- Lab Fisiologia Vegetal, Facultat de Biociències, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Spain
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Yang JL, Zhu XF, Zheng C, Zhang YJ, Zheng SJ. Genotypic differences in Al resistance and the role of cell-wall pectin in Al exclusion from the root apex in Fagopyrum tataricum. ANNALS OF BOTANY 2011; 107:371-8. [PMID: 21183454 PMCID: PMC3043930 DOI: 10.1093/aob/mcq254] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
BACKGROUND AND AIMS Aluminium (Al) toxicity is one of the factors limiting crop production on acid soils. However, genotypic differences exist among plant species or cultivars in response to Al toxicity. This study aims to investigate genotypic differences among eight cultivars of tatary buckwheat (Fagopyrum tataricum) for Al resistance and explore the possible mechanisms of Al resistance. METHODS Al resistance was evaluated based on relative root elongation (root elongation with Al/root elongation without Al). Root apex Al content, pectin content and exudation of root organic acids were determined and compared. KEY RESULTS Genotypic differences among the eight cultivars were correlated with exclusion of Al from the root apex. However, there was a lack of correlation between Al exclusion and Al-induced oxalate secretion. Interestingly, cell-wall pectin content of the root apex was generally lower in Al-resistant cultivars than in Al-sensitive cultivars. Although we were unable to establish a significant correlation between Al exclusion and pectin content among the eight cultivars, a strong correlation could be established among six cultivars, in which the pectin content in the most Al-resistant cultivar 'Chuan' was significantly lower than that in the most Al-sensitive cultivar 'Liuku2'. Furthermore, root apex cell-wall pectin methylesterase activity (PME) was similar in 'Chuan' and 'Liuku2' in the absence of Al, but Al treatment resulted in increased PME activity in 'Liuku2' compared with 'Chuan'. Immunolocalization of pectins also showed that the two cultivars had similar amounts of either low-methyl-ester pectins or high-methyl-ester pectins in the absence of Al, but Al treatment resulted in a more significant increase of low-methyl-ester pectins and decrease of high-methyl-ester pectins in 'Liuku2'. CONCLUSIONS Cell-wall pectin content may contribute, at least in part, to differential Al resistance among tatary buckwheat cultivars.
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Affiliation(s)
- Jian Li Yang
- Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiao Fang Zhu
- Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Cheng Zheng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yue Jiao Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Shao Jian Zheng
- Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
- For correspondence. E-mail
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Inostroza-Blancheteau C, Aquea F, Reyes-Díaz M, Alberdi M, Arce-Johnson P. Identification of Aluminum-Regulated Genes by cDNA-AFLP Analysis of Roots in Two Contrasting Genotypes of Highbush Blueberry (Vaccinium corymbosum L.). Mol Biotechnol 2011; 49:32-41. [DOI: 10.1007/s12033-010-9373-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Mattiello L, Kirst M, da Silva FR, Jorge RA, Menossi M. Transcriptional profile of maize roots under acid soil growth. BMC PLANT BIOLOGY 2010; 10:196. [PMID: 20828383 PMCID: PMC2956545 DOI: 10.1186/1471-2229-10-196] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2010] [Accepted: 09/09/2010] [Indexed: 05/18/2023]
Abstract
BACKGROUND Aluminum (Al) toxicity is one of the most important yield-limiting factors of many crops worldwide. The primary symptom of Al toxicity syndrome is the inhibition of root growth leading to poor water and nutrient absorption. Al tolerance has been extensively studied using hydroponic experiments. However, unlike soil conditions, this method does not address all of the components that are necessary for proper root growth and development. In the present study, we grew two maize genotypes with contrasting tolerance to Al in soil containing toxic levels of Al and then compared their transcriptomic responses. RESULTS When grown in acid soil containing toxic levels of Al, the Al-sensitive genotype (S1587-17) showed greater root growth inhibition, more Al accumulation and more callose deposition in root tips than did the tolerant genotype (Cat100-6). Transcriptome profiling showed a higher number of genes differentially expressed in S1587-17 grown in acid soil, probably due to secondary effects of Al toxicity. Genes involved in the biosynthesis of organic acids, which are frequently associated with an Al tolerance response, were not differentially regulated in both genotypes after acid soil exposure. However, genes related to the biosynthesis of auxin, ethylene and lignin were up-regulated in the Al-sensitive genotype, indicating that these pathways might be associated with root growth inhibition. By comparing the two maize lines, we were able to discover genes up-regulated only in the Al-tolerant line that also presented higher absolute levels than those observed in the Al-sensitive line. These genes encoded a lipase hydrolase, a retinol dehydrogenase, a glycine-rich protein, a member of the WRKY transcriptional family and two unknown proteins. CONCLUSIONS This work provides the first characterization of the physiological and transcriptional responses of maize roots when grown in acid soil containing toxic levels of Al. The transcriptome profiles highlighted several pathways that are related to Al toxicity and tolerance during growth in acid soil. We found several genes that were not found in previous studies using hydroponic experiments, increasing our understanding of plant responses to acid soil. The use of two germplasms with markedly different Al tolerances allowed the identification of genes that are a valuable tool for assessing the mechanisms of Al tolerance in maize in acid soil.
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Affiliation(s)
- Lucia Mattiello
- Laboratório de Genoma Funcional, Departamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Matias Kirst
- School of Forest Resources and Conservation, Plant Molecular and Cellular Biology Program, Genetics Institute, University of Florida, Gainesville, USA
| | - Felipe R da Silva
- Empresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Recursos Genéticos e Biotecnologia, Brasília, DF, Brazil
| | - Renato A Jorge
- Departamento de Fisico-Química, Instituto de Química, Universidade Estadual de Campinas, Campinas, SP, Brazil
| | - Marcelo Menossi
- Laboratório de Genoma Funcional, Departamento de Genética, Evolução e Bioagentes, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP, Brazil
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Famoso AN, Clark RT, Shaff JE, Craft E, McCouch SR, Kochian LV. Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms. PLANT PHYSIOLOGY 2010; 153:1678-91. [PMID: 20538888 PMCID: PMC2923895 DOI: 10.1104/pp.110.156794] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2010] [Accepted: 06/01/2010] [Indexed: 05/18/2023]
Abstract
The genetic and physiological mechanisms of aluminum (Al) tolerance have been well studied in certain cereal crops, and Al tolerance genes have been identified in sorghum (Sorghum bicolor) and wheat (Triticum aestivum). Rice (Oryza sativa) has been reported to be highly Al tolerant; however, a direct comparison of rice and other cereals has not been reported, and the mechanisms of rice Al tolerance are poorly understood. To facilitate Al tolerance phenotyping in rice, a high-throughput imaging system and root quantification computer program was developed, permitting quantification of the entire root system, rather than just the longest root. Additionally, a novel hydroponic solution was developed and optimized for Al tolerance screening in rice and compared with the Yoshida's rice solution commonly used for rice Al tolerance studies. To gain a better understanding of Al tolerance in cereals, comparisons of Al tolerance across cereal species were conducted at four Al concentrations using seven to nine genetically diverse genotypes of wheat, maize (Zea mays), sorghum, and rice. Rice was significantly more tolerant than maize, wheat, and sorghum at all Al concentrations, with the mean Al tolerance level for rice found to be 2- to 6-fold greater than that in maize, wheat, and sorghum. Physiological experiments were conducted on a genetically diverse panel of more than 20 rice genotypes spanning the range of rice Al tolerance and compared with two maize genotypes to determine if rice utilizes the well-described Al tolerance mechanism of root tip Al exclusion mediated by organic acid exudation. These results clearly demonstrate that the extremely high levels of rice Al tolerance are mediated by a novel mechanism, which is independent of root tip Al exclusion.
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Affiliation(s)
| | | | | | | | | | - Leon V. Kochian
- Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York 14853–1901 (A.N.F., S.R.M.); Robert W. Holley Center for Agriculture and Health, United States Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, New York 14853–2901 (R.T.C., J.E.S., E.C., L.V.K.)
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Horst WJ, Wang Y, Eticha D. The role of the root apoplast in aluminium-induced inhibition of root elongation and in aluminium resistance of plants: a review. ANNALS OF BOTANY 2010; 106:185-97. [PMID: 20237112 PMCID: PMC2889789 DOI: 10.1093/aob/mcq053] [Citation(s) in RCA: 249] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2009] [Revised: 12/21/2009] [Accepted: 01/18/2010] [Indexed: 05/18/2023]
Abstract
BACKGROUND Aluminium (Al) toxicity is the most important soil constraint for plant growth and development in acid soils. The mechanism of Al-induced inhibition of root elongation is still not well understood, and it is a matter of debate whether the primary lesions of Al toxicity are apoplastic or symplastic. SCOPE The present review focuses on the role of the apoplast in Al toxicity and resistance, summarizing evidence from our own experimental work and other evidence published since 1995. CONCLUSIONS The binding of Al in the cell wall particularly to the pectic matrix and to the apoplastic face of the plasma membrane in the most Al-sensitive root zone of the root apex thus impairing apoplastic and symplastic cell functions is a major factor leading to Al-induced inhibition of root elongation. Although symplastic lesions of Al toxicity cannot be excluded, the protection of the root apoplast appears to be a prerequisite for Al resistance in both Al-tolerant and Al-accumulating plant species. In many plant species the release of organic acid anions complexing Al, thus protecting the root apoplast from Al binding, is a most important Al resistance mechanism. However, there is increasing physiological, biochemical and, most recently also, molecular evidence showing that the modification of the binding properties of the root apoplast contributes to Al resistance. A further in-depth characterization of the Al-induced apoplastic reaction in the most Al-sensitive zone of the root apex is urgently required, particularly to understand the Al resistance of the most Al-resistant plant species.
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Affiliation(s)
- Walter J Horst
- Institute of Plant Nutrition, Leibniz University Hannover, Hannover, Germany.
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Krill AM, Kirst M, Kochian LV, Buckler ES, Hoekenga OA. Association and linkage analysis of aluminum tolerance genes in maize. PLoS One 2010; 5:e9958. [PMID: 20376361 PMCID: PMC2848604 DOI: 10.1371/journal.pone.0009958] [Citation(s) in RCA: 78] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2009] [Accepted: 03/11/2010] [Indexed: 11/18/2022] Open
Abstract
Background Aluminum (Al) toxicity is a major worldwide constraint to crop productivity on acidic soils. Al becomes soluble at low pH, inhibiting root growth and severely reducing yields. Maize is an important staple food and commodity crop in acidic soil regions, especially in South America and Africa where these soils are very common. Al exclusion and intracellular tolerance have been suggested as two important mechanisms for Al tolerance in maize, but little is known about the underlying genetics. Methodology An association panel of 282 diverse maize inbred lines and three F2 linkage populations with approximately 200 individuals each were used to study genetic variation in this complex trait. Al tolerance was measured as net root growth in nutrient solution under Al stress, which exhibited a wide range of variation between lines. Comparative and physiological genomics-based approaches were used to select 21 candidate genes for evaluation by association analysis. Conclusions Six candidate genes had significant results from association analysis, but only four were confirmed by linkage analysis as putatively contributing to Al tolerance: Zea mays AltSB like (ZmASL), Zea mays aluminum-activated malate transporter2 (ALMT2), S-adenosyl-L-homocysteinase (SAHH), and Malic Enzyme (ME). These four candidate genes are high priority subjects for follow-up biochemical and physiological studies on the mechanisms of Al tolerance in maize. Immediately, elite haplotype-specific molecular markers can be developed for these four genes and used for efficient marker-assisted selection of superior alleles in Al tolerance maize breeding programs.
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Affiliation(s)
- Allison M. Krill
- United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, United States of America
- Cornell University, Department of Plant Breeding and Genetics, Ithaca, New York, United States of America
| | - Matias Kirst
- Institute for Genomic Diversity, Cornell University, Ithaca, New York, United States of America
- University of Florida, School of Forest Resources and Conservation, Gainesville, Florida, United States of America
| | - Leon V. Kochian
- United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, United States of America
- Cornell University, Department of Plant Biology, Ithaca, New York, United States of America
| | - Edward S. Buckler
- United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, United States of America
- Cornell University, Department of Plant Breeding and Genetics, Ithaca, New York, United States of America
- Institute for Genomic Diversity, Cornell University, Ithaca, New York, United States of America
| | - Owen A. Hoekenga
- United States Department of Agriculture-Agricultural Research Service, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, United States of America
- Cornell University, Department of Plant Breeding and Genetics, Ithaca, New York, United States of America
- * E-mail:
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47
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Maron LG, Piñeros MA, Guimarães CT, Magalhaes JV, Pleiman JK, Mao C, Shaff J, Belicuas SNJ, Kochian LV. Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2010; 61:728-40. [PMID: 20003133 DOI: 10.1111/j.1365-313x.2009.04103.x] [Citation(s) in RCA: 156] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Crop yields are significantly reduced by aluminum (Al) toxicity on acidic soils, which comprise up to 50% of the world's arable land. Al-activated release of ligands (such as organic acids) from the roots is a major Al tolerance mechanism in plants. In maize, Al-activated root citrate exudation plays an important role in tolerance. However, maize Al tolerance is a complex trait involving multiple genes and physiological mechanisms. Recently, transporters from the MATE family have been shown to mediate Al-activated citrate exudation in a number of plant species. Here we describe the cloning and characterization of two MATE family members in maize, ZmMATE1 and ZmMATE2, which co-localize to major Al tolerance QTL. Both genes encode plasma membrane proteins that mediate significant anion efflux when expressed in Xenopus oocytes. ZmMATE1 expression is mostly concentrated in root tissues, is up-regulated by Al and is significantly higher in Al-tolerant maize genotypes. In contrast, ZmMATE2 expression is not specifically localized to any particular tissue and does not respond to Al. [(14)C]-citrate efflux experiments in oocytes demonstrate that ZmMATE1 is a citrate transporter. In addition, ZmMATE1 expression confers a significant increase in Al tolerance in transgenic Arabidopsis. Our data suggests that ZmMATE1 is a functional homolog of the Al tolerance genes recently characterized in sorghum, barley and Arabidopsis, and is likely to underlie the largest maize Al tolerance QTL found on chromosome 6. However, ZmMATE2 most likely does not encode a citrate transporter, and could be involved in a novel Al tolerance mechanism.
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Affiliation(s)
- Lyza G Maron
- Robert W. Holley Center for Agriculture and Health, USDA Agricultural Research Service, Cornell University, Ithaca, NY 14853, USA
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48
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Changes induced by aluminum stress in the organic acid content of maize seedlings: The crucial role of exogenous citrate in enhancing seedling growth. Biologia (Bratisl) 2009. [DOI: 10.2478/s11756-009-0179-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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49
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Tolrà R, Barceló J, Poschenrieder C. Constitutive and aluminium-induced patterns of phenolic compounds in two maize varieties differing in aluminium tolerance. J Inorg Biochem 2009; 103:1486-90. [PMID: 19740545 DOI: 10.1016/j.jinorgbio.2009.06.013] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2009] [Revised: 05/27/2009] [Accepted: 06/25/2009] [Indexed: 11/29/2022]
Abstract
Aluminium tolerance in maize is mainly due to more efficient Al exclusion. Nonetheless, even in tolerant varieties Al can gain access into the cells. Detoxification by binding to strong organic ligands should therefore play a role also in plants with high Al exclusion capacity. To test this hypothesis in this study the concentrations of soluble, free and bound, phenolics were analyzed in roots of two maize varieties differing in Al tolerance. Exposure for 24 h to 50 microM Al in nutrient solution strongly inhibited root elongation in the sensitive variety 16 x 36, but not in the Al-tolerant variety Cateto. Cateto accumulated about half the concentration of Al in roots than 16 x 36 (analysis performed after root desorption with citrate). Roots of Al-tolerant Cateto contained higher concentrations of caffeic acid, catechol and catechin than roots of the sensitive variety. Exposure to Al induced the accumulation of taxifolin in roots of both varieties. However, Al-tolerant Cateto accumulated about twice the concentration than Al-sensitive 16 x 36 of this pentahydroxyfavonol. The molar ratio for phenolics with catecholate groups to Al was about unity in roots of Cateto, while in those of 16 x 36 the ratio was ten times lower. Both the fact that these phenolics are strong ligands for Al and their high antioxidant and antiradical activity suggest that these compounds may provide protection against the Al fraction that is able to surpass the exclusion mechanisms operating in the tolerant maize variety.
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Affiliation(s)
- Roser Tolrà
- Plant Physiology Laboratory, Bioscience Faculty, Autonomous University of Barcelona, E-08193 Bellaterra, Spain
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50
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Li YY, Yang JL, Zhang YJ, Zheng SJ. Disorganized distribution of homogalacturonan epitopes in cell walls as one possible mechanism for aluminium-induced root growth inhibition in maize. ANNALS OF BOTANY 2009; 104:235-41. [PMID: 19483201 PMCID: PMC2710910 DOI: 10.1093/aob/mcp123] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2009] [Revised: 04/01/2009] [Accepted: 04/14/2009] [Indexed: 05/22/2023]
Abstract
BACKGROUND AND AIMS Aluminium (Al) toxicity is one of the most severe limitations to crop production in acid soils. Inhibition of root elongation is the primary symptom of Al toxicity. However, the underlying basis of the process is unclear. Considering the multiple physiological and biochemical functions of pectin in plants, possible involvement of homogalacturonan (HG), one of the pectic polysaccharide domains, was examined in connection with root growth inhibition induced by Al. METHODS An immunolabelling technique with antibodies specific to HG epitopes (JIM5, unesterified residues flanked by methylesterifed residues; JIM7, methyl-esterified residues flanked by unesterified residues) was used to visualize the distribution of different types of HG in cell walls of root apices of two maize cultivars differing in Al resistance. KEY RESULTS In the absence of Al, the JIM5 epitope was present around the cell wall with higher fluorescence intensity at cell corners lining the intercellular spaces, and the JIM7 epitope was present throughout the cell wall. However, treatment with 50 microm Al for 3 h produced 10 % root growth inhibition in both cultivars and caused the disappearance of fluorescence in the middle lamella of both epitopes. Prolonged Al treatment (24 h) with 50 % root growth inhibition in 'B73', an Al-sensitive cultivar, resulted in faint and irregular distribution of both epitopes. In 'Nongda3138', an Al-resistant cultivar, the distribution of HG epitopes was also restricted to the lining of intercellular spaces when a 50 % inhibition to root growth was induced by Al (100 microm Al, 9 h). Altered distribution of both epitopes was also observed when of roots were exposed to 50 microm LaCl(3) for 24 h, resulting in 40 % inhibition of root growth. CONCLUSIONS Changes in HG distribution and root growth inhibition were highly correlated, indicating that Al-induced perturbed distribution of HG epitopes is possibly involved in Al-induced inhibition of root growth in maize.
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Affiliation(s)
- Ya Ying Li
- Ministry of Education Key Laboratory for Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310029, China
| | - Jian Li Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yue Jiao Zhang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Shao Jian Zheng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
- For correspondence. E-mail
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