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Zhu R, Martínez-Roque MA, Figueroa-Miranda G, Hu Z, Acunzo A, Li H, Hu Q, Bednar J, Gensch T, Ingebrandt S, Offenhäusser A, Mayer D. Plasmon-enhanced fluorescence and electrochemical aptasensor for SARS-CoV-2 Spike protein detection. Talanta 2025; 281:126760. [PMID: 39226699 DOI: 10.1016/j.talanta.2024.126760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Revised: 08/20/2024] [Accepted: 08/22/2024] [Indexed: 09/05/2024]
Abstract
In this work, we combined plasmon-enhanced fluorescence and electrochemical (PEF-EC) transduction mechanisms to realize a highly sensitive dual-transducer aptasensor. To implement two traducers in one biosensor, a novel large-scale nanoimprint lithography process was introduced to fabricate gold nanopit arrays (AuNpA) with unique fringe structures. Light transmitting through the AuNpA samples exhibited a surface plasmon polariton peak overlapping with the excitation peak of the C7 aptamer-associated fluorophore methylene blue (MB). We observed a five and seven-times higher average fluorescence intensity over the AuNpA and fringe structure, respectively, in comparison to a plane Au film. Furthermore, the MB fluorophore was simultaneously utilized as a redox probe for electrochemical investigations and is described here as a dual transduction label for the first time. The novel dual transducer system was deployed for the detection of SARS-CoV-2 Spike protein via a C7 aptamer in combination with a strand displacement protocol. The PEF transducer exhibited a detection range from 1 fg/mL to 10 ng/mL with a detection limit of 0.07 fg/mL, while the EC traducer showed an extended dynamic range from 1 fg/mL to 100 ng/mL with a detection limit of 0.15 fg/mL. This work provides insights into an easy-to-perform, large-scale fabrication process for nanostructures enabling plasmon-enhanced fluorescence, and the development of an advanced but universal aptasensor platform.
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Affiliation(s)
- Ruifeng Zhu
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany; Institute of Materials in Electrical Engineering 1, RWTH Aachen University, 52074, Aachen, Germany
| | - Mateo Alejandro Martínez-Roque
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Gabriela Figueroa-Miranda
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Ziheng Hu
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Adriano Acunzo
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany; Department of Physics, University of Naples "Federico II", Via Cintia 26, Naples, 80126, Italy
| | - Hangyu Li
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Qinyu Hu
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Justus Bednar
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany; Fakultät für Mathematik, Informatik und Naturwissenschaften, RWTH Aachen University, 52074, Aachen, Germany
| | - Thomas Gensch
- Institute of Biological Information Processing, Molecular and Cellular Physiology (IBI-1), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Sven Ingebrandt
- Institute of Materials in Electrical Engineering 1, RWTH Aachen University, 52074, Aachen, Germany
| | - Andreas Offenhäusser
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany
| | - Dirk Mayer
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich GmbH, 52428, Jülich, Germany.
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Raza S, Poria R, Kala D, Sharma N, Sharma AK, Florien N, Tuli HS, Kaushal A, Gupta S. Innovations in dengue virus detection: An overview of conventional and electrochemical biosensor approaches. Biotechnol Appl Biochem 2024; 71:481-500. [PMID: 38225854 DOI: 10.1002/bab.2553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Accepted: 12/27/2023] [Indexed: 01/17/2024]
Abstract
Globally, people are in great threat due to the highly spreading of viral infectious diseases. Every year like 100-300 million cases of infections are found, and among them, above 80% are not recognized and irrelevant. Dengue virus (DENV) is an arbovirus infection that currently infects people most frequently. DENV encompasses four viral serotypes, and they each express comparable sign. From a mild febrile sickness to a potentially fatal dengue hemorrhagic fever, dengue can induce a variety of symptoms. Presently, the globe is being challenged by the untimely identification of dengue infection. Therefore, this review summarizes advances in the detection of dengue from conventional methods (nucleic acid-based, polymerase chain reaction-based, and serological approaches) to novel biosensors. This work illustrates an extensive study of the current designs and fabrication approaches involved in the formation of electrochemical biosensors for untimely identifications of dengue. Additionally, in electrochemical sensing of DENV, we skimmed through significances of biorecognition molecules like lectins, nucleic acid, and antibodies. The introduction of emerging techniques such as the CRISPR/Cas' system and their integration with biosensing platforms has also been summarized. Furthermore, the review revealed the importance of electrochemical approach compared with traditional diagnostic methods.
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Affiliation(s)
- Shadan Raza
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Renu Poria
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Deepak Kala
- Centera Laboratories, Institute of High Pressure Physics PAS, Warsaw, Poland
| | - Nishant Sharma
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Anil K Sharma
- Department of Biotechnology, Amity University of Punjab, Mohali, Punjab, India
| | - Nkurunziza Florien
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Hardeep S Tuli
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Ankur Kaushal
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
| | - Shagun Gupta
- Department of Bio-Sciences and Technology, Maharishi Markandeshwar (Deemed to Be) University, Mullana, Ambala, India
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Agarwal S, Srivastava R, Kumar S, Prajapati YK. COVID-19 Detection Using Contemporary Biosensors and Machine Learning Approach: A Review. IEEE Trans Nanobioscience 2024; 23:291-299. [PMID: 38090858 DOI: 10.1109/tnb.2023.3342126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2024]
Abstract
The current global pandemic not only claims countless human lives but also rocks the economies of every country on the planet. This fact needs the development of novel, productive, and efficient techniques to detect the SARS-CoV-2 virus. This review article discusses the current state of SARS-CoV-2 virus detection methods such as electrochemical, fluorescent, and electronic, etc., as well as the potential of optical sensors with a wide range of novel approaches and models. This review provides a comprehensive comparison of various detection methods by comparing the various techniques in depth. In addition, there is a brief discussion of the futuristic approach combining optical sensors with machine learning algorithms. It is believed that this study would prove to be critical for the scientific community to explore solutions for detecting viruses with improved functionality.
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Godin R, Hejazi S, Reuel NF. Advancements in Airborne Viral Nucleic Acid Detection with Wearable Devices. ADVANCED SENSOR RESEARCH 2024; 3:2300061. [PMID: 38764891 PMCID: PMC11101210 DOI: 10.1002/adsr.202300061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Indexed: 05/21/2024]
Abstract
Wearable health sensors for an expanding range of physiological parameters have experienced rapid development in recent years and are poised to disrupt the way healthcare is tracked and administered. The monitoring of environmental contaminants with wearable technologies is an additional layer of personal and public healthcare and is also receiving increased focus. Wearable sensors that detect exposure to airborne viruses could alert wearers of viral exposure and prompt proactive testing and minimization of viral spread, benefitting their own health and decreasing community risk. With the high levels of asymptomatic spread of COVID-19 observed during the pandemic, such devices could dramatically enhance our pandemic response capabilities in the future. To facilitate advancements in this area, this review summarizes recent research on airborne viral detection using wearable sensing devices as well as technologies suitable for wearables. Since the low concentration of viral particles in the air poses significant challenges to detection, methods for airborne viral particle collection and viral sensing are discussed in detail. A special focus is placed on nucleic acid-based viral sensing mechanisms due to their enhanced ability to discriminate between viral subtypes. Important considerations for integrating airborne viral collection and sensing on a single wearable device are also discussed.
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Affiliation(s)
- Ryan Godin
- Department of Chemical and Biological Engineering, Iowa State University
| | - Sepehr Hejazi
- Department of Chemical and Biological Engineering, Iowa State University
| | - Nigel F. Reuel
- Department of Chemical and Biological Engineering, Iowa State University
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Duan M, Zhong X, Wang B, Khelif A, Lee YK, Bermak A. A Highly Integrated Lab-on-a-CMOS Platform for Real-Time Monitoring of E. Coli Growth Kinetics. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2024; 18:174-185. [PMID: 37708011 DOI: 10.1109/tbcas.2023.3315671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/16/2023]
Abstract
Existing miniaturized and cost-effective solutions for bacterial growth monitoring usually require offline incubators with constant temperature to culture the bio-samples prior to measurement. Such a separated sample preparation and detection scheme requires extensive human intervention, risks contamination, and suffers from poor temporal resolution. To achieve integrated sample preparation and real-time bacterial growth monitoring, this article presents a lab-on-a-CMOS platform incorporates an optical sensor array, temperature sensor array, micro-heaters, and readout circuits. Escherichia coli's (E. coli) optimum growth temperature of 37 °C is achieved through a heat regulation system consisting of two micro-heaters and an on-chip temperature sensor array. A photodiode array with an in-pixel capacitive trans-impedance amplifier to reduce inter-pixel cross-coupling is designed to extract the optical information during bacterial growth. To balance the footprint, power consumption, and quantization speed, a 10 b column successive-approximation register (SAR)/single-slope (SS) dual-mode analog-to-digital converter (ADC) is designed to digitize the temperature and optical signals. Fabricated in a standard 0.18 um CMOS process, the proposed platform can regulate the sample temperature to 37 +/- 0.2/0.3 °C within 32 mins. Enabled by an on-chip heat regulation system and photodetectors, the prototype demonstrates a real-time monitoring of bacterial growth kinetics and antibiotic responses. Minute-level temporal resolution is achieved as this proposed platform is free of extensive and time-consuming human intervention. The proposed platform can be viably used in contamination sensitive applications such as antibiotic tests, stem cell cultures, and organ-on-chips.
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Hastman DA, Hooe S, Chiriboga M, Díaz SA, Susumu K, Stewart MH, Green CM, Hildebrandt N, Medintz IL. Multiplexed DNA and Protease Detection with Orthogonal Energy Transfer on a Single Quantum Dot Scaffolded Biosensor. ACS Sens 2024; 9:157-170. [PMID: 38160434 DOI: 10.1021/acssensors.3c01812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2024]
Abstract
Almost all pathogens, whether viral or bacterial, utilize key proteolytic steps in their pathogenesis. The ability to detect a pathogen's genomic material along with its proteolytic activity represents one approach to identifying the pathogen and providing initial evidence of its viability. Here, we report on a prototype biosensor design assembled around a single semiconductor quantum dot (QD) scaffold that is capable of detecting both nucleic acid sequences and proteolytic activity by using orthogonal energy transfer (ET) processes. The sensor consists of a central QD assembled via peptidyl-PNA linkers with multiple DNA sequences that encode complements to genomic sequences originating from the Ebola, Influenza, and COVID-19 viruses, which we use as surrogate targets. These are hybridized to complement strands labeled with a terbium (Tb) chelate, AlexaFluor647 (AF647), and Cy5.5 dyes, giving rise to two potential FRET cascades: the first includes Tb → QD → AF647 → Cy5.5 (→ = ET step), which is detected in a time-gated modality, and QD → AF647 → Cy5.5, which is detected from direct excitation. The labeled DNA-displaying QD construct is then further assembled with a RuII-modified peptide, which quenches QD photoluminescence by charge transfer and is recognized by a protease to yield the full biosensor. Each of the labeled DNAs and peptides can be ratiometrically assembled to the QD in a controllable manner to tune each of the ET pathways. Addition of a given target DNA displaces its labeled complement on the QD, disrupting that FRET channel, while protease addition disrupts charge transfer quenching of the central QD scaffold and boosts its photoluminescence and FRET relay capabilities. Along with characterizing the ET pathways and verifying biosensing in both individual and multiplexed formats, we also demonstrate the ability of this construct to function in molecular logic and perform Boolean operations; this highlights the construct's ability to discriminate and transduce signals between different inputs or pathogens. The potential application space for such a sensor device is discussed.
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Affiliation(s)
- David A Hastman
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
- American Society for Engineering Education, Washington ,District of Columbia20036, United States
| | - Shelby Hooe
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
| | - Matthew Chiriboga
- Northrop Grumman Corporation, Mission Systems, Baltimore, Maryland, 21240, United States
| | - Sebastián A Díaz
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
| | - Kimihiro Susumu
- Optical Sciences Division, Code 5600, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
| | - Michael H Stewart
- Optical Sciences Division, Code 5600, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
| | - Christopher M Green
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
| | - Niko Hildebrandt
- Department of Chemistry, Seoul National University, Seoul 08826, South Korea
- Department of Engineering Physics, McMaster University, Hamilton L8S 4L7, Canada
| | - Igor L Medintz
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Washington ,District of Columbia20375, United States
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Gong H, Chen S, Tang L, Chen F, Chen C, Cai C. Ultra-Sensitive Portable Visual Paper-Based Viral Molecularly Imprinted Sensor without Autofluorescence Interference. Anal Chem 2023; 95:17691-17698. [PMID: 37978911 DOI: 10.1021/acs.analchem.3c03506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
Detection of the virus is the primary factor to discover and block the occurrence and development of the virus epidemic. Here, an ultrasensitive paper-based virus molecular imprinting sensor is developed to detect two viruses simultaneously in which the detection limit of the influenza virus (H5N1) is 16.0 aM (9.63 × 103 particles/mL) while that of the Hepatitis B Virus (HBV) is 129 fM (7.77 × 107 particles/mL). This paper-based sensor is low cost and is easy to cut, store, and carry. In addition, the visual semiquantitative detection of two viruses is achieved by using two aptamer-functionalized persistent luminescent nanoparticles as signal probes. These probes and the imprinted cavities on the paper-based material formed sandwich-type double recognition of the target viruses. This sensor has extremely high sensitivity to the H5N1 virus, which is of great value to solve the influenza epidemic with the most outbreaks in history, and also opens up a new way for the prevention and control of other virus epidemics. This cheap and portable visual sensor provides the possibility for self-service detection and can greatly reduce the pressure on medical staff and reduce the risk of virus infection caused by the concentration of people to be tested.
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Affiliation(s)
- Hang Gong
- College of Chemistry and Chemical Engineering, Yunnan Normal University, Kunming 650500, China
| | - Siyu Chen
- The key Laboratory for Green Organic Synthesis and Application of Hunan Province, College of Chemistry, Xiangtan University, Xiangtan 411105, China
| | - Li Tang
- The key Laboratory for Green Organic Synthesis and Application of Hunan Province, College of Chemistry, Xiangtan University, Xiangtan 411105, China
| | - Feng Chen
- The key Laboratory for Green Organic Synthesis and Application of Hunan Province, College of Chemistry, Xiangtan University, Xiangtan 411105, China
| | - Chunyan Chen
- The key Laboratory for Green Organic Synthesis and Application of Hunan Province, College of Chemistry, Xiangtan University, Xiangtan 411105, China
| | - Changqun Cai
- The key Laboratory for Green Organic Synthesis and Application of Hunan Province, College of Chemistry, Xiangtan University, Xiangtan 411105, China
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Wagner P, Bakhshi Sichani S, Khorshid M, Lieberzeit P, Losada-Pérez P, Yongabi D. Bioanalytical sensors using the heat-transfer method HTM and related techniques. TECHNISCHES MESSEN : TM 2023; 90:761-785. [PMID: 38046181 PMCID: PMC10690833 DOI: 10.1515/teme-2023-0101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Accepted: 09/12/2023] [Indexed: 12/05/2023]
Abstract
This review provides an overview on bio- and chemosensors based on a thermal transducer platform that monitors the thermal interface resistance R th between a solid chip and the supernatant liquid. The R th parameter responds in a surprisingly strong way to molecular-scale changes at the solid-liquid interface, which can be measured thermometrically, using for instance thermocouples in combination with a controllable heat source. In 2012, the effect was first observed during on-chip denaturation experiments on complementary and mismatched DNA duplexes that differ in their melting temperature. Since then, the concept is addressed as heat-transfer method, in short HTM, and numerous applications of the basic sensing principle were identified. Functionalizing the chip with bioreceptors such as molecularly imprinted polymers makes it possible to detect neurotransmitters, inflammation markers, viruses, and environmental pollutants. In combination with aptamer-type receptors, it is also possible to detect proteins at low concentrations. Changing the receptors to surface-imprinted polymers has opened up new possibilities for quantitative bacterial detection and identification in complex matrices. In receptor-free variants, HTM was successfully used to characterize lipid vesicles and eukaryotic cells (yeast strains, cancer cell lines), the latter showing spontaneous detachment under influence of the temperature gradient inherent to HTM. We will also address modifications to the original HTM technique such as M-HTM, inverted HTM, thermal wave transport analysis TWTA, and the hot-wire principle. The article concludes with an assessment of the possibilities and current limitations of the method, together with a technological forecast.
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Affiliation(s)
- Patrick Wagner
- Department of Physics and Astronomy, Laboratory for Soft Matter and Biophysics ZMB, KU Leuven, Celestijnenlaan 200 D, B-3001Leuven, Belgium
| | - Soroush Bakhshi Sichani
- Department of Physics and Astronomy, Laboratory for Soft Matter and Biophysics ZMB, KU Leuven, Celestijnenlaan 200 D, B-3001Leuven, Belgium
| | - Mehran Khorshid
- Department of Physics and Astronomy, Laboratory for Soft Matter and Biophysics ZMB, KU Leuven, Celestijnenlaan 200 D, B-3001Leuven, Belgium
| | - Peter Lieberzeit
- Department of Physical Chemistry, University of Vienna, Währingerstrasse 42, A-1090Wien, Austria
| | - Patricia Losada-Pérez
- Physique Expérimentale Thermique et de la Matière Molle, Université Libre de Bruxelles, Campus de la Plaine – CP 223, Boulevard du Triomphe, ACC.2, B-1050Bruxelles, Belgium
| | - Derick Yongabi
- Department of Physics and Astronomy, Laboratory for Soft Matter and Biophysics ZMB, KU Leuven, Celestijnenlaan 200 D, B-3001Leuven, Belgium
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Palanisamy S, Lee LY, Kao CF, Chen WL, Wang HC, Shen ST, Jian JW, Yuan SSF, Kung YA, Wang YM. One-step-one-pot hydrothermally derived metal-organic-framework-nanohybrids for integrated point-of-care diagnostics of SARS-CoV-2 viral antigen/pseudovirus utilizing electrochemical biosensor chip. SENSORS AND ACTUATORS. B, CHEMICAL 2023; 390:133960. [PMID: 37193120 PMCID: PMC10170875 DOI: 10.1016/j.snb.2023.133960] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 04/24/2023] [Accepted: 05/09/2023] [Indexed: 05/18/2023]
Abstract
The COVID-19 pandemic has become a global catastrophe, affecting the health and economy of the human community. It is required to mitigate the impact of pandemics by developing rapid molecular diagnostics for SARS-CoV-2 virus detection. In this context, developing a rapid point-of-care (POC) diagnostic test is a holistic approach to the prevention of COVID-19. In this context, this study aims at presenting a real-time, biosensor chip for improved molecular diagnostics including recombinant SARS-CoV-2 spike glycoprotein and SARS-CoV-2 pseudovirus detection based on one-step-one-pot hydrothermally derived CoFeBDCNH2-CoFe2O4 MOF-nanohybrids. This study was tested on a PalmSens-EmStat Go POC device, showing a limit of detection (LOD) for recombinant SARS-CoV-2 spike glycoprotein of 6.68 fg/mL and 6.20 fg/mL in buffer and 10% serum-containing media, respectively. To validate virus detection in the POC platform, an electrochemical instrument (CHI6116E) was used to perform dose dependent studies under similar experimental conditions to the handheld device. The results obtained from these studies were comparable indicating the capability and high detection electrochemical performance of MOF nanocomposite derived from one-step-one-pot hydrothermal synthesis for SARS-CoV-2 detection for the first time. Further, the performance of the sensor was tested in the presence of Omicron BA.2 and wild-type D614G pseudoviruses.
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Affiliation(s)
- Sathyadevi Palanisamy
- Institute of Biomedical Engineering, National Tsing Hua University, Hsinchu 300, Taiwan
| | - Li-Yun Lee
- Department of Biological Science and Technology, Institute of Molecular Medicine and Bioengineering, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University, 75 Bo-Ai Street, Hsinchu 300, Taiwan
| | - Chih-Fei Kao
- Department of Biological Science and Technology, Institute of Molecular Medicine and Bioengineering, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University, 75 Bo-Ai Street, Hsinchu 300, Taiwan
| | - Wen-Liang Chen
- Department of Biological Science and Technology, Institute of Molecular Medicine and Bioengineering, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University, 75 Bo-Ai Street, Hsinchu 300, Taiwan
| | - Hsiang-Ching Wang
- Biomedical Technology and Device Research Lab, Industrial Technology Research Institute, Hsinchu 300, Taiwan
| | - San-Tai Shen
- AnTaimmu BioMed Co., Ltd, Unit 304, No. 1, Lixing 1st Road, East District, Hsinchu 300, Taiwan
| | - Jhih-Wei Jian
- AnTaimmu BioMed Co., Ltd, Unit 304, No. 1, Lixing 1st Road, East District, Hsinchu 300, Taiwan
| | - Shyng-Shiou F Yuan
- Translational Research Center, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung 807, Taiwan
- Department of Obstetrics and Gynecology, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung 807, Taiwan
- Faculty and College of Medicine, Kaohsiung Medical University, Kaohsiung 807, Taiwan
| | - Yu-An Kung
- Research Center for Emerging Viral Infections, College of Medicine, Chang Gung University, Taoyuan City, Taiwan
| | - Yun-Ming Wang
- Department of Biological Science and Technology, Institute of Molecular Medicine and Bioengineering, Center for Intelligent Drug Systems and Smart Bio-devices (IDS2B), National Yang Ming Chiao Tung University, 75 Bo-Ai Street, Hsinchu 300, Taiwan
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Tsounidi D, Angelopoulou M, Petrou P, Raptis I, Kakabakos S. Simultaneous Detection of SARS-CoV-2 Nucleoprotein and Receptor Binding Domain by a Multi-Area Reflectance Spectroscopy Sensor. BIOSENSORS 2023; 13:865. [PMID: 37754099 PMCID: PMC10526254 DOI: 10.3390/bios13090865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Revised: 08/22/2023] [Accepted: 08/30/2023] [Indexed: 09/28/2023]
Abstract
The COVID-19 pandemic has emphasized the urgent need for point-of-care methods suitable for the rapid and reliable diagnosis of viral infections. To address this demand, we report the rapid, label-free simultaneous determination of two SARS-CoV-2 proteins, namely, the nucleoprotein and the receptor binding domain peptide of S1 protein, by implementing a bioanalytical device based on Multi Area Reflectance Spectroscopy. Simultaneous detection of these two proteins is achieved by using silicon chips with adjacent areas of different silicon dioxide thickness on top, each of which is modified with an antibody specific to either the nucleoprotein or the receptor binding domain of SARS-CoV-2. Both areas were illuminated by a single probe that also collected the reflected light, directing it to a spectrometer. The online conversion of the combined reflection spectra from the two silicon dioxide areas into the respective adlayer thickness enabled real-time monitoring of immunoreactions taking place on the two areas. Several antibodies have been tested to define the pair, providing the higher specific signal following a non-competitive immunoassay format. Biotinylated secondary antibodies and streptavidin were used to enhance the specific signal. Both proteins were detected in less than 12 min, with detection limits of 1.0 ng/mL. The assays demonstrated high repeatability with intra- and inter-assay coefficients of variation lower than 10%. Moreover, the recovery of both proteins from spiked samples prepared in extraction buffer from a commercial self-test kit for SARS-CoV-2 collection from nasopharyngeal swabs ranged from 90.0 to 110%. The short assay duration in combination with the excellent analytical performance and the compact instrument size render the proposed device and assay suitable for point-of-care applications.
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Affiliation(s)
- Dimitra Tsounidi
- Immunoassays-Immunosensors Lab, Institute of Nuclear and Radiological Sciences and Technology, Energy and Safety, NCSR “Demokritos”, 15341 Aghia Paraskevi, Greece; (D.T.); (M.A.); (P.P.)
| | - Michailia Angelopoulou
- Immunoassays-Immunosensors Lab, Institute of Nuclear and Radiological Sciences and Technology, Energy and Safety, NCSR “Demokritos”, 15341 Aghia Paraskevi, Greece; (D.T.); (M.A.); (P.P.)
| | - Panagiota Petrou
- Immunoassays-Immunosensors Lab, Institute of Nuclear and Radiological Sciences and Technology, Energy and Safety, NCSR “Demokritos”, 15341 Aghia Paraskevi, Greece; (D.T.); (M.A.); (P.P.)
| | - Ioannis Raptis
- Institute of Nanoscience and Nanotechnology, NCSR “Demokritos”, 15341 Aghia Paraskevi, Greece;
| | - Sotirios Kakabakos
- Immunoassays-Immunosensors Lab, Institute of Nuclear and Radiological Sciences and Technology, Energy and Safety, NCSR “Demokritos”, 15341 Aghia Paraskevi, Greece; (D.T.); (M.A.); (P.P.)
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11
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Wang H, Liu J, Wei J, Xiao K, Chen Y, Jiang YL, Wan J. Au Nanoparticles/HfO₂/Fully Depleted Silicon-on-Insulator MOSFET Enabled Rapid Detection of Zeptomole COVID-19 Gene With Electrostatic Enrichment Process. IEEE TRANSACTIONS ON ELECTRON DEVICES 2023; 70:1236-1242. [PMID: 36972181 PMCID: PMC10009805 DOI: 10.1109/ted.2022.3233544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 11/17/2022] [Accepted: 12/29/2022] [Indexed: 06/18/2023]
Abstract
In this work, a novel sensing structure based on Au nanoparticles/HfO2/fully depleted silicon-on-insulator (AuNPs/HfO2/FDSOI) MOSFET is fabricated. Using such a planar double gate MOSFET, the electrostatic enrichment (ESE) process is proposed for the ultrasensitive and rapid detection of the coronavirus disease 2019 (COVID-19) ORF1ab gene. The back-gate (BG) bias can induce the required electric field that enables the ESE process in the testing liquid analyte with indirect contact with the top-Si layer. It is revealed that the ESE process can rapidly and effectively accumulate ORF1ab genes close to the HfO2 surface, which can significantly change the MOSFET threshold voltage ([Formula: see text]). The proposed MOSFET successfully demonstrates the detection of zeptomole (zM) COVID-19 ORF1ab gene with an ultralow detection limit down to 67 zM (~0.04 copy/[Formula: see text]) for a test time of less than 15 min even in a high ionic-strength solution. Besides, the quantitative dependence of [Formula: see text] variation on COVID-19 ORF1ab gene concentration from 200 zM to 100 femtomole is also revealed, which is further confirmed by TCAD simulation.
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Affiliation(s)
- Haihua Wang
- State Key Laboratory of ASIC and System, School of MicroelectronicsFudan UniversityShanghai200433China
| | - Jian Liu
- Shanghai Institute of Intelligent Electronics and Systems, School of Information Science and Technology, State Key Laboratory of ASIC and SystemFudan UniversityShanghai200433China
| | - Jiahao Wei
- Shanghai Institute of Intelligent Electronics and Systems, School of Information Science and Technology, State Key Laboratory of ASIC and SystemFudan UniversityShanghai200433China
| | - Kai Xiao
- Shanghai Institute of Intelligent Electronics and Systems, School of Information Science and Technology, State Key Laboratory of ASIC and SystemFudan UniversityShanghai200433China
| | - Yingxin Chen
- Shanghai Institute of Intelligent Electronics and Systems, School of Information Science and Technology, State Key Laboratory of ASIC and SystemFudan UniversityShanghai200433China
| | - Yu-Long Jiang
- State Key Laboratory of ASIC and System, School of MicroelectronicsFudan UniversityShanghai200433China
| | - Jing Wan
- Shanghai Institute of Intelligent Electronics and Systems, School of Information Science and Technology, State Key Laboratory of ASIC and SystemFudan UniversityShanghai200433China
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12
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Soni I, Kumar P, Jayaprakash GK, Pandith A. A Short Review Comparing Carbon-Based Electrochemical Platforms With Other Materials For Biosensing SARS-Cov-2. ChemistrySelect 2022; 7:e202202465. [PMID: 36711230 PMCID: PMC9874754 DOI: 10.1002/slct.202202465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 09/08/2022] [Indexed: 02/01/2023]
Abstract
Due to the 2019 SARS-CoV-2 outbreak, low-cost, fast, and user-friendly diagnostic kits for biosensing SARS-CoV-2 in real samples employing multiple working electrodes are in high demand. Choosing SARS-CoV-2 detecting electrodes is difficult because each has advantages and limitations. Carbon-based electrochemical sensing applications have attracted attention from the electrochemical sensing community because carbon and carbon-based materials have been a godsend for testing utilizing an electrochemical platform. Carbon working electrode electrochemical platforms are cost-effective and fast. Covid-sensors use carbon-based materials because they can be easily changed (with inorganic and organic functionalities), have quick response kinetics, and are chemically resistant. Covid-19 sensing materials include graphene and graphite. This review explains how carbon materials have been employed in N and S protein electrochemical detection. Here, we discussed a carbon-based technology for SARS-CoV-2 biosensing. We've compared carbon-based electrochemical sensing to different electrodes.
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Affiliation(s)
- Isha Soni
- Laboratory of Quantum ElectrochemistrySchool of Advanced Chemical ScienceShoolini UniversitySolan, 173229Himachal PradeshIndia
| | - Pankaj Kumar
- Laboratory of Quantum ElectrochemistrySchool of Advanced Chemical ScienceShoolini UniversitySolan, 173229Himachal PradeshIndia
| | - Gururaj Kudur Jayaprakash
- Laboratory of Quantum ElectrochemistrySchool of Advanced Chemical ScienceShoolini UniversitySolan, 173229Himachal PradeshIndia
- Department of ChemistryNitte Meenakshi Institute of Technology, Bangalore, 560064KarnatakaIndia
| | - Anup Pandith
- College of Biomedical EngineeringTaipei Medical UniversityTaipei City11031Taiwan (R.O.C
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13
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Ben-Shimon Y, Sharma CP, Arnusch CJ, Ya'akobovitz A. Freestanding Laser-Induced Graphene Ultrasensitive Resonative Viral Sensors. ACS APPLIED MATERIALS & INTERFACES 2022; 14:44713-44723. [PMID: 36083630 DOI: 10.1021/acsami.2c08302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Early and reliable detection of an infectious viral disease is critical to accurately monitor outbreaks and to provide individuals and health care professionals the opportunity to treat patients at the early stages of a disease. The accuracy of such information is essential to define appropriate actions to protect the population and to reduce the likelihood of a possible pandemic. Here, we show the fabrication of freestanding laser-induced graphene (FLIG) flakes that are highly sensitive sensors for high-fidelity viral detection. As a case study, we show the detection of SARS-CoV-2 spike proteins. FLIG flakes are nonembedded porous graphene foams ca. 30 μm thick that are generated using laser irradiation of polyimide and can be fabricated in seconds at a low cost. Larger pieces of FLIG were cut forming a cantilever, used as suspended resonators, and characterized for their electromechanics behavior. Thermomechanical analysis showed FLIG stiffness comparable to other porous materials such as boron nitride foam, and electrostatic excitation showed amplification of the vibrations at frequencies in the range of several kilo-hertz. We developed a protocol for aqueous biological sensing by characterizing the wetting dynamic response of the sensor in buffer solution and in water, and devices functionalized with COVID-19 antibodies specifically detected SARS-CoV-2 spike protein binding, while not detecting other viruses such as MS2. The FLIG sensors showed a clear mass-dependent frequency response shift of ∼1 Hz/pg, and low nanomolar concentrations could be detected. Ultimately, the sensors demonstrated an outstanding limit of detection of 2.63 pg, which is equivalent to as few as ∼5000 SARS-CoV-2 viruses. Thus, the FLIG platform technology can be utilized to develop portable and highly accurate sensors, including biological applications where the fast and reliable protein or infectious particle detection is critical.
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Affiliation(s)
- Yahav Ben-Shimon
- Faculty of Engineering Sciences, Ben-Gurion University of the Negev, 8410501 Be'er Sheva, Israel
| | - Chetan Prakash Sharma
- Department of Desalination and Water Treatment, Zuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 84990 Be'er Sheva, Israel
| | - Christopher J Arnusch
- Department of Desalination and Water Treatment, Zuckerberg Institute for Water Research, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben Gurion, 84990 Be'er Sheva, Israel
| | - Assaf Ya'akobovitz
- Faculty of Engineering Sciences, Ben-Gurion University of the Negev, 8410501 Be'er Sheva, Israel
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14
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Ayala-Charca G, Salahandish R, Khalghollah M, Sadighbayan D, Haghayegh F, Sanati-Nezhad A, Ghafar-Zadeh E. A Low-Cost Handheld Impedimetric Biosensing System for Rapid Diagnostics of SARS-CoV-2 Infections. IEEE SENSORS JOURNAL 2022; 22:15673-15682. [PMID: 36346096 PMCID: PMC9454264 DOI: 10.1109/jsen.2022.3181580] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 05/25/2022] [Indexed: 06/12/2023]
Abstract
Current laboratory diagnostic approaches for virus detection give reliable results, but they require a lengthy procedure, trained personnel, and expensive equipment and reagents; hence, they are not a suitable choice for home monitoring purposes. This paper addresses this challenge by developing a portable impedimetric biosensing system for the identification of COVID-19 patients. This sensing system has two main parts: a throwaway two-working electrode (2-WE) strip and a novel read-out circuit, specifically designed for simultaneous signal acquisition from both working electrodes. Highly reliable electrochemical signal tracking from multiplex immunosensors provides a potential for flexible and portable multi-biomarker detection. The electrodes' surfaces were functionalized with SARS-CoV-2 Nucleocapsid Antibody enabling the selective detection of Nucleocapsid protein (N-protein) along with self-validation in the clinical nasopharyngeal swab specimens. The proposed programmable highly sensitive impedance read-out system allows for a wide dynamic detection range, which makes the sensor capable of detecting N-protein concentrations between 0.116 and 10,000 pg/mL. This lightweight and economical read-out arrangement is an ideal prospect for being mass-produced, especially during urgent pandemic situations. Also, such an impedimetric sensing platform has the potential to be redesigned for targeting not only other infectious diseases but also other critical disorders.
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Affiliation(s)
- Giancarlo Ayala-Charca
- Biologically Inspired Sensors and ActuatorsDepartment of Electrical Engineering and Computer Science, Lassonde School of EngineeringYork UniversityTorontoONM3J1P3Canada
| | - Razieh Salahandish
- BioMEMS and Bioinspired Microfluidic LaboratoryDepartment of Mechanical and Manufacturing EngineeringUniversity of CalgaryCalgaryABT2N 1N4Canada
- Center for Bioengineering Research and EducationUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Mahmood Khalghollah
- BioMEMS and Bioinspired Microfluidic LaboratoryDepartment of Mechanical and Manufacturing EngineeringUniversity of CalgaryCalgaryABT2N 1N4Canada
- Department of Electrical and Software EngineeringUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Deniz Sadighbayan
- Biologically Inspired Sensors and ActuatorsDepartment of Electrical Engineering and Computer Science, Lassonde School of EngineeringYork UniversityTorontoONM3J1P3Canada
| | - Fatemeh Haghayegh
- BioMEMS and Bioinspired Microfluidic LaboratoryDepartment of Mechanical and Manufacturing EngineeringUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Amir Sanati-Nezhad
- BioMEMS and Bioinspired Microfluidic LaboratoryDepartment of Mechanical and Manufacturing EngineeringUniversity of CalgaryCalgaryABT2N 1N4Canada
- Center for Bioengineering Research and EducationUniversity of CalgaryCalgaryABT2N 1N4Canada
- Biomedical Engineering Graduate ProgramUniversity of CalgaryCalgaryABT2N 1N4Canada
| | - Ebrahim Ghafar-Zadeh
- Biologically Inspired Sensors and ActuatorsDepartment of Electrical Engineering and Computer Science, Lassonde School of EngineeringYork UniversityTorontoONM3J1P3Canada
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15
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Sheta SM, El-Sheikh SM. Nanomaterials and metal-organic frameworks for biosensing applications of mutations of the emerging viruses. Anal Biochem 2022; 648:114680. [PMID: 35429447 PMCID: PMC9007753 DOI: 10.1016/j.ab.2022.114680] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 03/26/2022] [Accepted: 04/01/2022] [Indexed: 12/15/2022]
Abstract
The world today lives in a state of terrible fear due to the mutation of the emerging COVID-19. With the continuation of this pandemic, there is an urgent need for fast, accurate testing devices to detect the emerging SARS-CoV-2 pandemic in terms of biosensors and point-of-care testing. Besides, the urgent development in personal defense tools, anti-viral surfaces and wearables, and smartphones open the door for simplifying the self-diagnosis process everywhere. This review introduces a quick COVID-19 overview: definition, transmission, pathophysiology, the identification and diagnosis, mutation and transformation, and the global situation. It also focuses on an overview of the rapidly advanced technologies based on nanomaterials and MOFs for biosensing, diagnosing, and viral control of the SARS-CoV-2 pandemic. Finally, highlight the latest technologies, applications, existing achievements, and preventive diagnostic strategies to control this epidemic and combat the emerging coronavirus. This humble effort aims to provide a helpful survey that can be used to develop a creative solution and to lay down the future vision of diagnosis against COVID-19.
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Affiliation(s)
- Sheta M Sheta
- Department of Inorganic Chemistry, National Research Centre, 33 El-Behouth St., Dokki, Giza, 12622, Egypt.
| | - Said M El-Sheikh
- Department of Nanomaterials and Nanotechnology, Central Metallurgical R & D Institute, Cairo, 11421, Egypt.
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16
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Ardalan S, Ignaszak A. Innovations and Challenges in Electroanalytical Tools for Rapid Biosurveillance of SARS-CoV-2. ADVANCED MATERIALS TECHNOLOGIES 2022; 7:2200208. [PMID: 35942251 PMCID: PMC9350127 DOI: 10.1002/admt.202200208] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 05/21/2022] [Indexed: 05/30/2023]
Abstract
Since the onset of the coronavirus disease 2019 (COVID-19) pandemic, preventive social paradigms and vaccine development have undergone serious renovations, which drastically reduced the viral spread and increased collective immunity. Although the technological advancements in diagnostic systems for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) detection are groundbreaking, the lack of sensitive, robust, and consumer-end point-of-care (POC) devices with smartphone connectivity are conspicuously felt. Despite its revolutionary impact on biotechnology and molecular diagnostics, the reverse transcription polymerase chain reaction technique as the gold standard in COVID-19 diagnosis is not suitable for rapid testing. Today's POC tests are dominated by the lateral flow assay technique, with inadequate sensitivity and lack of internet connectivity. Herein, the biosensing advancements in Internet of Things (IoT)-integrated electroanalytical tools as superior POC devices for SARS-CoV-2 detection will be demonstrated. Meanwhile, the impeding factors pivotal for the successful deployment of such novel bioanalytical devices, including the incongruous standards, redundant guidelines, and the limitations of IoT modules will be discussed.
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Affiliation(s)
- Sina Ardalan
- Department of ChemistryUniversity of New Brunswick30 Dineen Drive, FrederictonFrederictonNBE3B 5A3Canada
| | - Anna Ignaszak
- Department of ChemistryUniversity of New Brunswick30 Dineen Drive, FrederictonFrederictonNBE3B 5A3Canada
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17
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Belkheir M, Rouissat M, Mokaddem A, Doumi B, Boutaous A. Studying the effect of polymethyl methacrylate polymer opticals fibers (POFs) on the performance of composite materials based on the polyether ether ketone (PEEK) polymer matrix. EMERGENT MATERIALS 2022; 5:2075-2085. [PMID: 35692304 PMCID: PMC9171084 DOI: 10.1007/s42247-022-00392-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 05/24/2022] [Indexed: 05/05/2023]
Abstract
More recently, various techniques have been implemented for the sensors manufacturing purpose, such as fiber Bragg gratings fibers (FBG) that allows variable core refractive index suitable for a large scale of measurements types, fiber optic evanescent waves (FOEW) for water parameters measurement, microstructured and crystal photonic optical fibers, polymers optical fiber (POFs), and so on. In this perspective, the objective of this work is to study the reliability and the origin of the resistance of each fiber-matrix interface of the composite materials PMMA/PEEK, Topas/PEEK, and Topas-Zeonex/PEEK. The genetic simulation is based on the probabilistic approach of Weibull to calculate the damage at the interface by crossing the two damages of the matrix and the fiber respectively. The results show that the PMMA/PEEK composite is the most resistant to the mechanical stresses applied compared to those Topas/PEEK and Topas-Zeonex/PEEK; these results were confirmed by the level of damage to the interface observed for the studied materials. The performed calculations are in good agreement with the analytical results of Cox, where he demonstrated that Young's modulus of fibers have an important influence on the shear strength of the fiber-matrix interface of composite materials. Based on the obtained results, the present study gives the opportunity for the proposed materials (PMMA/PEEK and Zeonex/PEEK) to be as potential candidates for the smart digital applications and telecoms aims.
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Affiliation(s)
- Mohammed Belkheir
- Laboratoire d’Instrumentation Et Matériaux Avancés, Centre Universitaire Nour Bachir El-Bayadh, 32000 El-Bayadh, Algeria
| | - Mehdi Rouissat
- Laboratoire STIC (Université de Tlemcen), Tlemce, Algeria
- Centre Universitaire Nour Bachir El-Bayadh, 32000 El-Bayadh, Algeria
| | - Allel Mokaddem
- Laboratoire d’Instrumentation Et Matériaux Avancés, Centre Universitaire Nour Bachir El-Bayadh, 32000 El-Bayadh, Algeria
| | - Bendouma Doumi
- Laboratoire d’Instrumentation Et Matériaux Avancés, Centre Universitaire Nour Bachir El-Bayadh, 32000 El-Bayadh, Algeria
- Département Technologie Des Matériaux, Faculté de Physique, Université des Sciences et de la Technologie, USTO-MB, Oran, Algeria
| | - Ahmed Boutaous
- Faculty of Sciences, Department of Physics, Dr Tahar Moulay University of Saïda, 20000 Saïda, Algeria
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18
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Sadighbayan D, Minhas-Khan A, Ghafar-Zadeh E. Laser-Induced Graphene-Functionalized Field-Effect Transistor-Based Biosensing: A Potent Candidate for COVID-19 Detection. IEEE Trans Nanobioscience 2022; 21:232-245. [PMID: 34648455 PMCID: PMC9088816 DOI: 10.1109/tnb.2021.3119996] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 07/30/2021] [Accepted: 09/29/2021] [Indexed: 11/26/2022]
Abstract
Speedy and on-time detection of coronavirus disease 2019 (COVID-19) is of high importance to control the pandemic effectively and stop its disastrous consequences. A widely available, reliable, label-free, and rapid test that can recognize tiny amounts of specific biomarkers might be the solution. Nanobiosensors are one of the most attractive candidates for this purpose. Integration of graphene with biosensing devices shifts the performance of these systems to an incomparable level. Between the various arrangements using this wonder material, field-effect transistors (FETs) display a precise detection even in complex samples. The emergence of pioneering biosensors for detecting a wide range of diseases especially COVID-19 created the incentive to prepare a review of the recent graphene-FET biosensing platforms. However, the graphene fabrication and transfer to the surface of the device is an imperative factor for researchers to take into account. Therefore, we also reviewed the common methods of manufacturing graphene for biosensing applications and discuss their advantages and disadvantages. One of the most recent synthesizing techniques - laser-induced graphene (LIG) - is attracting attention owing to its extraordinary benefits which are thoroughly explained in this article. Finally, a conclusion highlighting the current challenges is presented.
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Affiliation(s)
- Deniz Sadighbayan
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
| | - Aamir Minhas-Khan
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
| | - Ebrahim Ghafar-Zadeh
- Biologically Inspired Sensors and Actuators Laboratory (BioSA)York UniversityTorontoONM3J 1P3Canada
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19
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Kocheril PA, Lenz KD, Mascareñas DDL, Morales-Garcia JE, Anderson AS, Mukundan H. Portable Waveguide-Based Optical Biosensor. BIOSENSORS 2022; 12:195. [PMID: 35448255 PMCID: PMC9025188 DOI: 10.3390/bios12040195] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 03/16/2022] [Accepted: 03/17/2022] [Indexed: 05/31/2023]
Abstract
Rapid, on-site diagnostics allow for timely intervention and response for warfighter support, environmental monitoring, and global health needs. Portable optical biosensors are being widely pursued as a means of achieving fieldable biosensing due to the potential speed and accuracy of optical detection. We recently developed the portable engineered analytic sensor with automated sampling (PEGASUS) with the goal of developing a fieldable, generalizable biosensing platform. Here, we detail the development of PEGASUS's sensing hardware and use a test-bed system of identical sensing hardware and software to demonstrate detection of a fluorescent conjugate at 1 nM through biotin-streptavidin chemistry.
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Affiliation(s)
- Philip A. Kocheril
- Physical Chemistry and Applied Spectroscopy Group, Chemistry Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (P.A.K.); (K.D.L.); (A.S.A.)
| | - Kiersten D. Lenz
- Physical Chemistry and Applied Spectroscopy Group, Chemistry Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (P.A.K.); (K.D.L.); (A.S.A.)
| | - David D. L. Mascareñas
- National Security Education Center, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (D.D.L.M.); (J.E.M.-G.)
| | - John E. Morales-Garcia
- National Security Education Center, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (D.D.L.M.); (J.E.M.-G.)
| | - Aaron S. Anderson
- Physical Chemistry and Applied Spectroscopy Group, Chemistry Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (P.A.K.); (K.D.L.); (A.S.A.)
| | - Harshini Mukundan
- Physical Chemistry and Applied Spectroscopy Group, Chemistry Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA; (P.A.K.); (K.D.L.); (A.S.A.)
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20
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Asadzadeh A, Mohammadzadeh Z, Fathifar Z, Jahangiri-Mirshekarlou S, Rezaei-Hachesu P. A framework for information technology-based management against COVID-19 in Iran. BMC Public Health 2022; 22:402. [PMID: 35219292 PMCID: PMC8881940 DOI: 10.1186/s12889-022-12781-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 02/16/2022] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND The COVID-19 pandemic has become a global concern. Iran is one of the countries affected most by the SARS-CoV-2 outbreak. As a result, the use of information technology (IT) has a variety of applications for pandemic management. The purpose of this study was to develop a conceptual framework for responding to the COVID-19 pandemic via IT management, based on extensive literature review and expert knowledge. METHODS The conceptual framework is developed in three stages: (1) a literature review to gather practical experience with IT applications for managing the COVID-19 pandemic, (2) a study of Iranian documents and papers that present Iran's practical experience with COVID-19, and (3) developing a conceptual framework based on the previous steps and validating it through a Delphi approach in two rounds, and by 13 experts. RESULTS The proposed conceptual framework demonstrates that during pandemics, 22 different types of technologies were used for various purposes, including virtual education, early warning, rapid screening and diagnosis of infected individuals, and data management. These objectives were classified into six categories, with the following applications highlighted: (1) Prevention (M-health, Internet search queries, telehealth, robotics, Internet of things (IoT), Artificial Intelligence (AI), big data, Virtual Reality (VR), social media); (2) Diagnosis (M-health, drones, telehealth, IoT, Robotics, AI, Decision Support System (DSS), Electronic Health Record (EHR)); (3) Treatment (Telehealth, M-health, AI, Robotic, VR, IoT); (4) Follow-up (Telehealth, M-health, VR), (5) Management & planning (Geographic information system, M-health, IoT, blockchain), and (6) Protection (IoT, AI, Robotic and automatic vehicles, Augmented Reality (AR)). In Iran, the use of IT for prevention has been emphasized through M-health, internet search queries, social media, video conferencing, management and planning objectives using databases, health information systems, dashboards, surveillance systems, and vaccine coverage. CONCLUSIONS IT capabilities were critical during the COVID-19 outbreak. Practical experience demonstrates that various aspects of information technologies were overlooked. To combat this pandemic, the government and decision-makers of this country should consider strategic planning that incorporates successful experiences against COVID-19 and the most advanced IT capabilities.
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Affiliation(s)
- Afsoon Asadzadeh
- Student Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran
- Health Information Technology Department, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Daneshgah St, 5165665811, Tabriz, Iran
| | - Zeinab Mohammadzadeh
- Health Information Technology Department, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Daneshgah St, 5165665811, Tabriz, Iran
| | - Zahra Fathifar
- Student Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran
- Health Information Technology Department, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Daneshgah St, 5165665811, Tabriz, Iran
| | - Soheila Jahangiri-Mirshekarlou
- Student Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran
- Health Information Technology Department, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Daneshgah St, 5165665811, Tabriz, Iran
| | - Peyman Rezaei-Hachesu
- Health Information Technology Department, School of Management and Medical Informatics, Tabriz University of Medical Sciences, Daneshgah St, 5165665811, Tabriz, Iran.
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21
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Zhang L, Zhu Y, Jiang M, Wu Y, Deng K, Ni Q. Body Temperature Monitoring for Regular COVID-19 Prevention Based on Human Daily Activity Recognition. SENSORS (BASEL, SWITZERLAND) 2021; 21:7540. [PMID: 34833616 PMCID: PMC8622194 DOI: 10.3390/s21227540] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Revised: 10/11/2021] [Accepted: 11/04/2021] [Indexed: 11/16/2022]
Abstract
Existing wearable systems that use G-sensors to identify daily activities have been widely applied for medical, sports and military applications, while body temperature as an obvious physical characteristic that has rarely been considered in the system design and relative applications of HAR. In the context of the normalization of COVID-19, the prevention and control of the epidemic has become a top priority. Temperature monitoring plays an important role in the preliminary screening of the population for fever. Therefore, this paper proposes a wearable device embedded with inertial and temperature sensors that is used to apply human behavior recognition (HAR) to body surface temperature detection for body temperature monitoring and adjustment by evaluating recognition algorithms. The sensing system consists of an STM 32-based microcontroller, a 6-axis (accelerometer and gyroscope) sensor, and a temperature sensor to capture the original data from 10 individual participants under 4 different daily activity scenarios. Then, the collected raw data are pre-processed by signal standardization, data stacking and resampling. For HAR, several machine learning (ML) and deep learning (DL) algorithms are implemented to classify the activities. To compare the performance of different classifiers on the seven-dimensional dataset with temperature sensing signals, evaluation metrics and the algorithm running time are considered, and random forest (RF) is found to be the best-performing classifier with 88.78% recognition accuracy, which is higher than the case of the absence of temperature data (<78%). In addition, the experimental results show that participants' body surface temperature in dynamic activities was lower compared to sitting, which can be associated with the possible missing fever population due to temperature deviations in COVID-19 prevention. According to different individual activities, epidemic prevention workers are supposed to infer the corresponding standard normal body temperature of a patient by referring to the specific values of the mean expectation and variance in the normal distribution curve provided in this paper.
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Affiliation(s)
- Lei Zhang
- College of Information Science and Technology, Donghua University, Shanghai 201620, China; (L.Z.); (Y.Z.); (M.J.); (Y.W.); (K.D.)
| | - Yanjin Zhu
- College of Information Science and Technology, Donghua University, Shanghai 201620, China; (L.Z.); (Y.Z.); (M.J.); (Y.W.); (K.D.)
| | - Mingliang Jiang
- College of Information Science and Technology, Donghua University, Shanghai 201620, China; (L.Z.); (Y.Z.); (M.J.); (Y.W.); (K.D.)
| | - Yuchen Wu
- College of Information Science and Technology, Donghua University, Shanghai 201620, China; (L.Z.); (Y.Z.); (M.J.); (Y.W.); (K.D.)
| | - Kailian Deng
- College of Information Science and Technology, Donghua University, Shanghai 201620, China; (L.Z.); (Y.Z.); (M.J.); (Y.W.); (K.D.)
| | - Qin Ni
- College of Information, Mechanical and Electrical Engineering, Shanghai Normal University, Shanghai 201418, China
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22
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Divagar M, Gayathri R, Rasool R, Shamlee JK, Bhatia H, Satija J, Sai VVR. Plasmonic Fiberoptic Absorbance Biosensor (P-FAB) for Rapid Detection of SARS-CoV-2 Nucleocapsid Protein. IEEE SENSORS JOURNAL 2021; 21:22758-22766. [PMID: 35582121 PMCID: PMC8843044 DOI: 10.1109/jsen.2021.3107736] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 08/19/2021] [Accepted: 08/19/2021] [Indexed: 05/11/2023]
Abstract
SARS-CoV-2 nucleocapsid protein-based COVID-19 diagnosis is a promising alternative to the high-priced, time-consuming, and labor-intensive RT-PCR tests. Here, we developed a rapid, dip-type, wash-free plasmonic fiber optic absorbance biosensor (P-FAB) strategy for the point-of-care detection of SARS-CoV-2 N-protein, expressed abundantly during the infection. P-FAB involves a sandwich assay with plasmonic labels on the surface of a U-bent fiber optic sensor probe with a high evanescent wave absorbance (EWA) sensitivity. The SARS-CoV-2 N-protein is quantified in terms of the change in the intensity of the light propagating through the U-bent sensor probe coupled to a green LED and a photodetector. Firstly, the optical fiber material (silica vs. polymeric optical fiber), was evaluated to realize a sensitive sensor platform. The optimal size of AuNP labels (20, 40, and 60 nm) to achieve high sensitivity and a lower limit of detection (LoD) was investigated. Following the P-FAB strategy, fused silica/glass optical fiber (GOF) U-bent senor probe and citrate-capped AuNP labels (size ~40 nm) gave rise to an LoD down to ~2.5 ng/mL within 10 mins of read-out time. Further, studies on development and validation of a point of care (PoC) read-out device, and preclinical studies are in progress.
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Affiliation(s)
- M. Divagar
- Biomedical Engineering GroupDepartment of Applied MechanicsIndian Institute of Technology MadrasChennai600036India
| | - R. Gayathri
- Biomedical Engineering GroupDepartment of Applied MechanicsIndian Institute of Technology MadrasChennai600036India
| | - Rahiel Rasool
- Biomedical Engineering GroupDepartment of Applied MechanicsIndian Institute of Technology MadrasChennai600036India
| | - J. Kuzhandai Shamlee
- Biomedical Engineering GroupDepartment of Applied MechanicsIndian Institute of Technology MadrasChennai600036India
| | | | - Jitendra Satija
- Centre for NanobiotechnologyVellore Institute of TechnologyVellore632014India
| | - V. V. R. Sai
- Biomedical Engineering GroupDepartment of Applied MechanicsIndian Institute of Technology MadrasChennai600036India
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23
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Perdomo SA, Ortega V, Jaramillo-Botero A, Mancilla N, Mosquera-DeLaCruz JH, Valencia DP, Quimbaya M, Contreras JD, Velez GE, Loaiza OA, Gómez A, de la Roche J. SenSARS: A Low-Cost Portable Electrochemical System for Ultra-Sensitive, Near Real-Time, Diagnostics of SARS-CoV-2 Infections. IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT 2021; 70:4007710. [PMID: 35582002 PMCID: PMC8843068 DOI: 10.1109/tim.2021.3119147] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 09/13/2021] [Accepted: 09/24/2021] [Indexed: 05/08/2023]
Abstract
A critical path to solving the SARS-CoV-2 pandemic, without further socioeconomic impact, is to stop its spread. For this to happen, pre- or asymptomatic individuals infected with the virus need to be detected and isolated opportunely. Unfortunately, there are no current ubiquitous (i.e., ultra-sensitive, cheap, and widely available) rapid testing tools capable of early detection of SARS-CoV-2 infections. In this article, we introduce an accurate, portable, and low-cost medical device and bio-nanosensing electrode dubbed SenSARS and its experimental validation. SenSARS' device measures the electrochemical impedance spectra of a disposable bio-modified screen-printed carbon-based working electrode (SPCE) to the changes in the concentration of SARS-CoV-2 antigen molecules ("S" spike proteins) contained within a sub-microliter fluid sample deposited on its surface. SenSARS offers real-time diagnostics and viral load tracking capabilities. Positive and negative control tests were performed in phosphate-buffered saline (PBS) at different concentrations (between 1 and 50 fg/mL) of SARS-CoV-2(S), Epstein-Barr virus (EBV) glycoprotein gp350, and Influenza H1N1 M1 recombinant viral proteins. We demonstrate that SenSARS is easy to use, with a portable and lightweight (< 200 g) instrument and disposable test electrodes (
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Affiliation(s)
- Sammy A. Perdomo
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
| | - Viviana Ortega
- Facultad de Ciencias Naturales y ExactasUniversidad del ValleCali760032Colombia
| | - Andres Jaramillo-Botero
- Chemistry and Chemical Engineering DivisionCalifornia Institute of TechnologyPasadenaCA91125USA
- Omicas ProgramPontificia Universidad JaverianaCali760031Colombia
| | - Nelson Mancilla
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
| | | | | | - Mauricio Quimbaya
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
| | - Juan David Contreras
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
| | | | - Oscar A. Loaiza
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
| | - Adriana Gómez
- Facultad de Ingeniería y CienciasPontificia Universidad JaverianaCali760031Colombia
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24
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Mišeikis V, Shilton RJ, Travagliati M, Agostini M, Cecchini M, Piazza V, Coletti C. Acoustic streaming of microparticles using graphene-based interdigital transducers. NANOTECHNOLOGY 2021; 32:375503. [PMID: 34030151 DOI: 10.1088/1361-6528/ac0473] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 05/24/2021] [Indexed: 06/12/2023]
Abstract
Surface acoustic wave (SAW) devices offer many benefits in chemistry and biomedicine, enabling precise manipulation of micro-droplets, mixing of liquids by acoustic streaming and pumping of liquids in enclosed channels, while presenting a cost-effective and easy fabrication and integration with electronic devices. In this work, we present microfluidic devices which use graphene-based interdigital transducers (IDTs) to generate SAWs with a frequency of 100 MHz and an amplitude of up to 200 pm, which allow us to manipulate microparticle solutions by acoustic streaming. Due to the negligible mass loading of the piezoelectric surface by graphene, the SAWs generated by these devices have no frequency shift, typically observed when metal IDTs are used.
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Affiliation(s)
- Vaidotas Mišeikis
- Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Richie J Shilton
- Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Marco Travagliati
- Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, I-56127 Pisa, Italy
- NEST, Scuola Normale Superiore and Istituto Nanoscienze-CNR, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Matteo Agostini
- NEST, Scuola Normale Superiore and Istituto Nanoscienze-CNR, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Marco Cecchini
- NEST, Scuola Normale Superiore and Istituto Nanoscienze-CNR, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Vincenzo Piazza
- Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, I-56127 Pisa, Italy
| | - Camilla Coletti
- Center for Nanotechnology Innovation @NEST, Istituto Italiano di Tecnologia, Piazza San Silvestro 12, I-56127 Pisa, Italy
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