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Wang B, Zhang P, Guo X, Bao X, Tian J, Li G, Zhang J. Contribution of zeolite to nitrogen retention in chicken manure and straw compost: Reduction of NH 3 and N 2O emissions and increase of nitrate. BIORESOURCE TECHNOLOGY 2024; 391:129981. [PMID: 37926358 DOI: 10.1016/j.biortech.2023.129981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 11/02/2023] [Accepted: 11/02/2023] [Indexed: 11/07/2023]
Abstract
Co-composting of chicken manure, straw and zeolite was investigated in a water bath heating system to estimate the effect of zeolite on physicochemical properties and metabolic functions related to nitrogen conversion. The results indicated that NH3 catches by zeolite was concentrated in the early stage and zeolite with 10 % addition reduced 28 % NH3 and 55 % N2O emissions as compost ended. The nitrate content in 10 % zeolite group was 17 % higher than that in control group. There was no significant increase of NO2- in zeolite group. More NO2- formed NH3, rather than being converted to NOx through denitrification. The abundance of nitrification genes amoA and hao increased except nxrA in zeolite groups. Denitrification was the most obvious at 20 d and zeolite decreased the abundance of denitrification genes narG, nirK and nosZ at this time.
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Affiliation(s)
- Bing Wang
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
| | - Peng Zhang
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
| | - Xu Guo
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
| | - Xu Bao
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
| | - Junjie Tian
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
| | - Guomin Li
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China.
| | - Jian Zhang
- College of Chemical Engineering, Northeast Electric Power University, Jilin 132012, China
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2
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Shaaban M, Wang XL, Song P, Hou X, Wu Y, Hu R. Ascription of nosZ gene, pH and copper for mitigating N 2O emissions in acidic soils. ENVIRONMENTAL RESEARCH 2023; 237:117059. [PMID: 37659639 DOI: 10.1016/j.envres.2023.117059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 08/24/2023] [Accepted: 08/31/2023] [Indexed: 09/04/2023]
Abstract
Soil nitrous oxide (N2O) emissions are alarming for global warming and climate change. N2O reduction is carried out only by nosZ gene encoded N2O-reductase, which is highly sensitive to acidic pH and copper (Cu) contents. Therefore, a microcosm study was conducted to examine the attribution of soil pH management, Cu supply and nosZ gene abundance for N2O emission mitigation. Cu was applied at the dose of 0, 10, 25 and 50 mg kg-1 to three acidic soils (Soil 1, 2 and 3) without and with dolomite (0 and 5 g kg-1). Cu application and soil pH increment substantially enlarged the abundance of nosZ gene, and consequently mitigated soil N2O emissions; highest reduction with 25 Cu mg kg-1. Decline in NH4+ and subsequently accumulation of NO3-, and large contents of MBC and DOC in dolomite treated soils led to a substantial N2O reduction. The cumulative N2O emissions were lowest in the treatment of 25 Cu mg kg-1 with dolomite application for each soil. Results suggest that soil pH increment, an adequate Cu supply, and nosZ gene abundance can potentially lower soil N2O emissions in acidic soils.
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Affiliation(s)
- Muhammad Shaaban
- College of Agriculture, Henan University of Science and Technology, Luoyang, 471023, China.
| | - Xiao-Ling Wang
- College of Agriculture, Henan University of Science and Technology, Luoyang, 471023, China
| | - Peng Song
- College of Agriculture, Henan University of Science and Technology, Luoyang, 471023, China
| | - Xiaogai Hou
- College of Agriculture, Henan University of Science and Technology, Luoyang, 471023, China
| | - Yupeng Wu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, China
| | - Ronggui Hu
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, China.
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Li L, Chen M, Liu S, Bao H, Yang D, Qu H, Chen Y. Does the aging behavior of microplastics affect the process of denitrification by the difference of copper ion adsorption? JOURNAL OF HAZARDOUS MATERIALS 2023; 452:131276. [PMID: 36989773 DOI: 10.1016/j.jhazmat.2023.131276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/09/2023] [Accepted: 03/21/2023] [Indexed: 05/03/2023]
Abstract
Riparian sediment is a hot zone for denitrification that can withhold copper and microplastics (MPs) from outside. It has been proven that MPs affect denitrification and the existing forms of copper in the environment. However, the impact of copper on sediment denitrification under exposure to MPs remains unclear. This study revealed the response of sediment denitrification to copper availability under the adsorption of MPs and the complexation of MP-derived dissolved organic matter (DOM). These results showed that MP accumulation inhibited denitrification. However, aged MPs increased the activity of nitrite reductase (12.64%), nitrogen dioxide reductase (37.68%), and electron transport (28.93%) compared with pristine MPs. The aging behavior of MPs alleviated 28.18% nitrite accumulation and 16.41-118.35% nitrous oxide emissions. Thus, the aging behavior of MPs alleviated the inhibition of denitrification. Notably, we resolved the copper ion adsorption and complexation by MPs, MP-derived DOM contributed to the denitrification process, and we found that the key nitrogen removal factors were affected by KL, KM, and K2. These results fill a gap in our understanding of biochemical synthesis of MPs during denitrification. Furthermore, it can be used to build a predictive understanding of the long-term effects of MPs on the sediment nitrogen cycle.
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Affiliation(s)
- Lanxi Li
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China
| | - Mengli Chen
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China
| | - Shushan Liu
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China
| | - Huanyu Bao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, China
| | - Dongxu Yang
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China
| | - Han Qu
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China
| | - Yi Chen
- College of Environment and Ecology, Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of education, Chongqing University, Chongqing 400045, China.
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Kong F, Wang J, Hou W, Cui Y, Yu L, Zhang Y, Wang S. Influence of modified biochar supported sulfidation of nano-zero-valent-iron (S-nZVI/BC) on nitrate removal and greenhouse gas emission in constructed wetland. J Environ Sci (China) 2023; 125:568-581. [PMID: 36375939 DOI: 10.1016/j.jes.2022.02.040] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 02/22/2022] [Accepted: 02/22/2022] [Indexed: 06/16/2023]
Abstract
In this study, the biochar (BC) produced from sawdust, sludge, reed and walnut were used to support sulfidation of nano-zero-valent-iron (S-nZVI) to enhance nitrate (NO3--N) removal and investigate the impact on greenhouse gas emissions. Batch experiment results showed the S-nZVI/BCsawdust (2:1, 500), S-nZVI/BCsludge (2:1, 900), S-nZVI/BCreed (2:1, 700), and S-nZVI/BC walnut (2:1, 700) respectively improved NO3--N removal efficiencies by 22%, 20%, 3% and 0.1%, and the selectivity toward N2 by 22%, 25%, 22% and 18%. S-nZVI uniformly loaded on BC provided electrons for the conversion of NO3--N to N2 through Fe0. At the same time, FeSx layer was formed on the outer layer of ZVI in the sulfidation process to prevent iron oxidation, so as to improve the electrons utilization efficiency After adding four kinds of S-nZVI/BC into constructed wetlands (CWs), the NO3--N removal efficiencies could reach 100% and the N2O emission fluxes were reduced by 24.17%-36.63%. And the average removal efficiencies of TN, COD, TP were increased by 21.9%, -16.5%, 44.3%, repectively. The increasing relative abundances of denitrifying bacteria, such as Comamonas and Simplicispira, suggested that S-nZVI/BC could also improve the process of microbial denitrification. In addition, different S-nZVI/BC had different effects on denitrification functional genes (narG, nirk, nirS and nosZ genes), methanotrophs (pmoA) and methanogenesis (mcrA). This research provided an effective method to improve NO3--N removal and reduce N2O emission in CWs.
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Affiliation(s)
- Fanlong Kong
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Junru Wang
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Weihao Hou
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Yuqian Cui
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Lihua Yu
- Qingdao Environmental Protection Bureau, Laixi Branch, Qingdao 266699, China
| | - Yi Zhang
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Sen Wang
- College of Environmental Science and Engineering, Qingdao University, Qingdao 266071, China.
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Ma J, Niu A, Liao Z, Qin J, Xu S, Lin C. Factors affecting N 2O fluxes from heavy metal-contaminated mangrove soils in a subtropical estuary. MARINE POLLUTION BULLETIN 2023; 186:114425. [PMID: 36462424 DOI: 10.1016/j.marpolbul.2022.114425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 11/22/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
A 1-year field monitoring program was carried out to observe seasonal variation in N2O fluxes at two typical mangrove wetlands in a subtropical estuary. The soils in the island-type mangrove wetland had a higher level of heavy metal(loid) contamination and a lower level of salinity compared to the small bay-type mangrove wetland. While there was a high level of similarity in the seasonal variation pattern of N2O fluxes between the two investigated sites with both being significantly higher in summer than in other seasons, the average of N2O fluxes in the island-type mangrove wetland was 7.19 μg·m-2·h-1, which tended to be lower compared to the small bay-type mangrove wetland (15.63 μg·m-2·h-1). Overall, N2O flux was closely related to soil-borne heavy metal(loid)s, showing a trend to decrease with increasing concentration of these heavy metal(loid)s. The N2O fluxes increased with decreasing abundance of either denitrifiers or nitrifiers. But the opposite was observed for the anammox bacteria present in the soils. The anammox bacteria were more sensitive to heavy metal(loid) stress but more tolerated high salinity encountered in the investigated soils compared to the denitrifiers or nitrifiers. It appears that anammox reactions mediated by anammox bacteria played a key role in affecting the spatial variation in N2O fluxes from the mangrove soils in the study area. And an increased level of ammonium in soils tended to promote the activity of anammox bacteria and consequently enhanced N2O emission from the mangrove soils.
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Affiliation(s)
- Jiaojiao Ma
- School of Geography, South China Normal University, Guangzhou 510631, China; Guangdong Academy of Forestry, Guangzhou 510520, China
| | - Anyi Niu
- School of Geography, South China Normal University, Guangzhou 510631, China
| | - Zhenni Liao
- School of Geography, South China Normal University, Guangzhou 510631, China
| | - Junhao Qin
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Songjun Xu
- School of Geography, South China Normal University, Guangzhou 510631, China.
| | - Chuxia Lin
- Faculty of Science, Engineering and Built Environment, Deakin University, Burwood, VIC 3125, Australia.
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Dai H, Sun Y, Wan D, Abbasi HN, Guo Z, Geng H, Wang X, Chen Y. Simultaneous denitrification and phosphorus removal: A review on the functional strains and activated sludge processes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 835:155409. [PMID: 35469879 DOI: 10.1016/j.scitotenv.2022.155409] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 04/15/2022] [Accepted: 04/16/2022] [Indexed: 06/14/2023]
Abstract
Eutrophication has attracted extensive attention owing to its harmful effects to the organisms and aquatic environment. Studies on the functional microorganisms with the ability of simultaneously nitrogen (N) and phosphorus (P) removal is of great significance for alleviating eutrophication. Thus far, several strains from various genera have been reported to accomplish simultaneous N and P removal, which is primarily observed in Bacillus, Pseudomonas, Paracoccus, and Arthrobacter. The mechanism of N and P removal by denitrifying P accumulating organisms (DPAOs) is different from the traditional biological N and P removal. The denitrifying P removal (DPR) technology based on the metabolic function of DPAOs can overcome the problem of carbon source competition and sludge age contradiction in traditional biological N and P removal processes and can be applied to the treatment of urban sewage with low C/N ratio. This paper reviews the mechanism of N and P removal by DPAOs from the aspect of the metabolic pathways and enzymatic processes. The research progress on DPR processes is also summarized and elucidated. Further research should focus on the efficient removal of N and P by improving the performance of functional microorganisms and development of new coupling processes. This review can serve as a basis for screening DPAOs with high N and P removal efficiency and developing new DPR processes in the future.
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Affiliation(s)
- Hongliang Dai
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology, Zhenjiang, China; School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, China
| | - Yang Sun
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology, Zhenjiang, China
| | - Dong Wan
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, China
| | - Haq Nawaz Abbasi
- Department of Environmental science, Federal Urdu University of Arts, Science and Technology, Karachi, Pakistan
| | - Zechong Guo
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology, Zhenjiang, China; School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, China
| | - Hongya Geng
- Department of Materials, Imperial College London, Prince Consort Road, London SW7 2AZ, UK
| | - Xingang Wang
- School of Environmental and Chemical Engineering, Jiangsu University of Science and Technology, Zhenjiang, China.
| | - Yong Chen
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, China
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Hoang HG, Thuy BTP, Lin C, Vo DVN, Tran HT, Bahari MB, Le VG, Vu CT. The nitrogen cycle and mitigation strategies for nitrogen loss during organic waste composting: A review. CHEMOSPHERE 2022; 300:134514. [PMID: 35398076 DOI: 10.1016/j.chemosphere.2022.134514] [Citation(s) in RCA: 60] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 03/23/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
Composting is a promising technology to decompose organic waste into humus-like high-quality compost, which can be used as organic fertilizer. However, greenhouse gases (N2O, CO2, CH4) and odorous emissions (H2S, NH3) are major concerns as secondary pollutants, which may pose adverse environmental and health effects. During the composting process, nitrogen cycle plays an important role to the compost quality. This review aimed to (1) summarizes the nitrogen cycle of the composting, (2) examine the operational parameters, microbial activities, functions of enzymes and genes affecting the nitrogen cycle, and (3) discuss mitigation strategies for nitrogen loss. Operational parameters such as moisture, oxygen content, temperature, C/N ratio and pH play an essential role in the nitrogen cycle, and adjusting them is the most straightforward method to reduce nitrogen loss. Also, nitrification and denitrification are the most crucial processes of the nitrogen cycle, which strongly affect microbial community dynamics. The ammonia-oxidizing bacteria or archaea (AOB/AOA) and the nitrite-oxidizing bacteria (NOB), and heterotrophic and autotrophic denitrifiers play a vital role in nitrification and denitrification with the involvement of ammonia monooxygenase (amoA) gene, nitrate reductase genes (narG), and nitrous oxide reductase (nosZ). Furthermore, adding additives such as struvite salts (MgNH4PO4·6H2O), biochar, and zeolites (clinoptilolite), and microbial inoculation, namely Bacillus cereus (ammonium strain), Pseudomonas donghuensis (nitrite strain), and Bacillus licheniformis (nitrogen fixer) can help control nitrogen loss. This review summarized critical issues of the nitrogen cycle and nitrogen loss in order to help future composting research with regard to compost quality and air pollution/odor control.
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Affiliation(s)
- Hong Giang Hoang
- Faculty of Health Sciences and Finance - Accounting, Dong Nai Technology University, Bien Hoa, Dong Nai, 76100, Viet Nam
| | - Bui Thi Phuong Thuy
- Faculty of Basic Sciences, Van Lang University, 68/69 Dang Thuy Tram Street, Ward 13, Binh Thanh District, Ho Chi Minh City, 700000, Viet Nam
| | - Chitsan Lin
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, 81157, Taiwan
| | - Dai-Viet N Vo
- Center of Excellence for Green Energy and Environmental Nanomaterials (CE@GrEEN), Nguyen Tat Thanh University, Ho Chi Minh City, 700000, Viet Nam; School of Chemical Engineering, Universiti Sains Malaysia, Engineering Campus, 14300, Nibong Tebal, Penang, Malaysia
| | - Huu Tuan Tran
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, 81157, Taiwan.
| | - Mahadi B Bahari
- Faculty of Science, Universiti Technoloki Malaysia, 81310, UTM Johor Bahru, Johor, Malaysia
| | - Van Giang Le
- Department of Chemical Engineering, National Cheng Kung University, Tainan, 701, Taiwan
| | - Chi Thanh Vu
- Civil and Environmental Engineering Department, University of Alabama in Huntsville, Huntsville, AL, 35899, USA.
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Singh AK, Gupta RK, Purohit HJ, Khardenavis AA. Genomic characterization of denitrifying methylotrophic Pseudomonas aeruginosa strain AAK/M5 isolated from municipal solid waste landfill soil. World J Microbiol Biotechnol 2022; 38:140. [PMID: 35705700 DOI: 10.1007/s11274-022-03311-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Accepted: 05/15/2022] [Indexed: 11/26/2022]
Abstract
Municipal landfills are known for methane production and a source of nitrate pollution leading to various environmental issues. Therefore, this niche was selected for the isolation of one-carbon (C1) utilizing bacteria with denitrifying capacities using anaerobic enrichment on nitrate mineral salt medium supplemented with methanol as carbon source. Eight axenic cultures were isolated of which, isolate AAK/M5 demonstrated the highest methanol removal (73.28%) in terms of soluble chemical oxygen demand and methane removal (41.27%) at the expense of total nitrate removal of 100% and 33% respectively. The whole genome characterization with phylogenomic approach suggested that the strain AAK/M5 could be assigned to Pseudomonas aeruginosa with close neighbours as type strains DVT779, AES1M, W60856, and LES400. The circular genome annotation showed the presence of complete set of genes essential for methanol utilization and complete denitrification process. The study demonstrates the potential of P. aeruginosa strain AAK/M5 in catalysing methane oxidation thus serving as a methane sink vis-à-vis utilization of nitrate. Considering the existence of such bacteria at landfill site, the study highlights the need to develop strategies for their enrichment and designing of efficient catabolic activity for such environments.
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Affiliation(s)
- Ashish Kumar Singh
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440020, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Rakesh Kumar Gupta
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440020, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Hemant J Purohit
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440020, India
| | - Anshuman Arun Khardenavis
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440020, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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Pacheco PJ, Cabrera JJ, Jiménez-Leiva A, Bedmar EJ, Mesa S, Tortosa G, Delgado MJ. Effect of Copper on Expression of Functional Genes and Proteins Associated with Bradyrhizobium diazoefficiens Denitrification. Int J Mol Sci 2022; 23:ijms23063386. [PMID: 35328804 PMCID: PMC8951191 DOI: 10.3390/ijms23063386] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 03/16/2022] [Accepted: 03/17/2022] [Indexed: 12/16/2022] Open
Abstract
Nitrous oxide (N2O) is a powerful greenhouse gas that contributes to climate change. Denitrification is one of the largest sources of N2O in soils. The soybean endosymbiont Bradyrhizobium diazoefficiens is a model for rhizobial denitrification studies since, in addition to fixing N2, it has the ability to grow anaerobically under free-living conditions by reducing nitrate from the medium through the complete denitrification pathway. This bacterium contains a periplasmic nitrate reductase (Nap), a copper (Cu)-containing nitrite reductase (NirK), a c-type nitric oxide reductase (cNor), and a Cu-dependent nitrous oxide reductase (Nos) encoded by the napEDABC, nirK, norCBQD and nosRZDFYLX genes, respectively. In this work, an integrated study of the role of Cu in B. diazoefficiens denitrification has been performed. A notable reduction in nirK, nor, and nos gene expression observed under Cu limitation was correlated with a significant decrease in NirK, NorC and NosZ protein levels and activities. Meanwhile, nap expression was not affected by Cu, but a remarkable depletion in Nap activity was found, presumably due to an inhibitory effect of nitrite accumulated under Cu-limiting conditions. Interestingly, a post-transcriptional regulation by increasing Nap and NirK activities, as well as NorC and NosZ protein levels, was observed in response to high Cu. Our results demonstrate, for the first time, the role of Cu in transcriptional and post-transcriptional control of B. diazoefficiens denitrification. Thus, this study will contribute by proposing useful strategies for reducing N2O emissions from agricultural soils.
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Variable Inhibition of Nitrous Oxide Reduction in Denitrifying Bacteria by Different Forms of Methanobactin. Appl Environ Microbiol 2022; 88:e0234621. [PMID: 35285718 DOI: 10.1128/aem.02346-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Aerobic methanotrophic activity is highly dependent on copper availability, and methanotrophs have developed multiple strategies to collect copper. Specifically, when copper is limiting (ambient concentrations less than 1 μM), some methanotrophs produce and secret a small modified peptide (less than 1,300 Da) termed methanobactin (MB) that binds copper with high affinity. As MB is secreted into the environment, other microbes that require copper for their metabolism may be inhibited as MB may make copper unavailable; e.g., inhibition of denitrifiers as complete conversion nitrate to dinitrogen involves multiple enzymes, some of which are copper-dependent. Of key concern is inhibition of the copper-dependent nitrous oxide reductase (NosZ), the only known enzyme capable of converting nitrous oxide (N2O) to dinitrogen. Herein, we show that different forms of MB differentially affect copper uptake and N2O reduction by Pseudomonas stutzeri strain DCP-Ps1 (that expresses clade I NosZ) and Dechloromonas aromatica strain RCB (that expresses clade II NosZ). Specifically, in the presence of MB from Methylocystis sp. strain SB2 (SB2-MB), copper uptake and nosZ expression were more significantly reduced than in the presence of MB from Methylosinus trichosporium OB3b (OB3b-MB). Further, N2O accumulation increased more significantly for both P. stutzeri strain DCP-Ps1 and D. aromatica strain RCB in the presence of SB2-MB versus OB3b-MB. These data illustrate that copper competition between methanotrophs and denitrifying bacteria can be significant and that the extent of such competition is dependent on the form of MB that methanotrophs produce. IMPORTANCE Herein, it was demonstrated that the different forms of methanobactin differentially enhance N2O emissions from Pseudomonas stutzeri strain DCP-Ps1 (harboring clade I nitrous oxide reductase) and Dechloromonas aromatica strain RCB (harboring clade II nitrous oxide reductase). This work contributes to our understanding of how aerobic methanotrophs compete with denitrifiers for the copper uptake and also suggests how MBs prevent copper collection by denitrifiers, thus downregulating expression of nitrous oxide reductase. This study provides critical information for enhanced understanding of microbe-microbe interactions that are important for the development of better predictive models of net greenhouse gas emissions (i.e., methane and nitrous oxide) that are significantly controlled by microbial activity.
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11
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Alam T, Bezares-Cruz JC, Mahmoud A, Jones KD. Nutrients and solids removal in bioretention columns using recycled materials under intermittent and frequent flow operations. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 297:113321. [PMID: 34303939 DOI: 10.1016/j.jenvman.2021.113321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 07/11/2021] [Accepted: 07/16/2021] [Indexed: 06/13/2023]
Abstract
This research investigated the fate and removal of nitrite (NO2-N), nitrate (NO3-N), orthophosphate (PO4-P), and total suspended solids (TSS) in two bioretention columns, which were designed with three recycled materials. The first column was packed with Recycled Concrete Aggregate (RCA). The second column was a Layered Media (LM), which has layers of RCA with crushed glass and rice husks. The columns were tested under intermittent and frequent operations of synthetic runoff with low and high feed concentrations. The effect of inflow concentration, antecedent dry days (ADD), column age, and the anticipated number of events (EN) was also statistically analyzed on the performance of columns. Depending on column types, nutrient removal was significantly (p < 0.05) increased under frequent flow operations by 26-53% over intermittent. However, TSS removal was notably (p < 0.05) increased by 23-35% under intermittent operations over frequent. Overall, LM showed an increased NO2-N (92 ± 2%) and NO3-N (88% ± 2%) removal under low feed frequent operations and TSS removal (97% ± 2%) under initial intermittent operations. On the contrary, RCA showed a maximum of 99% PO4-P removal under high feed frequent operations. Results showed that the nutrient outflow concentration was found to have a negative correlation with EN and column age and a positive correlation with ADDs throughout the experiments.
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Affiliation(s)
- Taufiqul Alam
- Department of Environmental Engineering, Texas A&M University-Kingsville, 917 W. Avenue B, Kingsville, TX, 78363, USA.
| | - Juan César Bezares-Cruz
- Department of Environmental Engineering, Texas A&M University-Kingsville, 917 W. Avenue B, Kingsville, TX, 78363, USA.
| | - Ahmed Mahmoud
- Department of Civil Engineering, University of Texas Rio Grande Valley, 1201 West University Drive, Edinburg, TX, 78539, USA.
| | - Kim D Jones
- Department of Environmental Engineering, Texas A&M University-Kingsville, 917 W. Avenue B, Kingsville, TX, 78363, USA.
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12
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Ma H, Gao X, Chen Y, Zhu J, Liu T. Fe(II) enhances simultaneous phosphorus removal and denitrification in heterotrophic denitrification by chemical precipitation and stimulating denitrifiers activity. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117668. [PMID: 34426390 DOI: 10.1016/j.envpol.2021.117668] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 06/15/2021] [Accepted: 06/24/2021] [Indexed: 06/13/2023]
Abstract
Using Fe(II) salt as the precipitant in heterotrophic denitrification achieves improved TP removal, and enhancement in denitrification was often observed. This study aimed to obtain a better understanding of Fe(II)-enhanced denitrification with sufficient carbon source supply. Laboratory-scale experiments were conducted in SBRs with or without Fe(II) addition. Remarkably improved TP removal was experienced. TP removal efficiency in Fe(II) adding reactor was 85.8 ± 3.4%; whereas, that in the reactor without Fe(II) addition was 31.1 ± 2.8%. Besides improved TP removal, better TN removal efficiency (94.1 ± 1.1%) were recorded when Fe(II) was added, and that in the reactor without Fe(II) addition was 89 ± 0.8%. The specific denitrification rate were observed increase by 12.6% when Fe(II) was added. Further microbial analyses revealed increases in the abundances of typical denitrifiers (i.e. Niastella, Opitutus, Dechloromonas, Ignavibacterium, Anaeromyxobacter, Pedosphaera, and Myxococcus). Their associated denitrifying genes, narG, nirS, norB, and nosZ, were observed had 14.2%, 19.4%, 21.6%, and 9.9% elevation, respectively. Such enhancement in denitrification shall not be due to nitrate-dependent ferrous oxidation, which prevails in organic-deficient environments. In an environment with a continuous supply of Fe(II) and plenty of carbon sources, a cycle of denitrifying enzyme activity enhancement in the presence of Fe(II) facilitating nitrogen substrate utilization, stimulating denitrifier metabolism and growth, elevating denitrifying genes abundance, and increasing denitrifying enzymes expression were thought to be responsible for the Fe(II)-enhanced heterotrophic denitrification. Fe(II) salt is often a less expensive precipitant and has recently become attractive for TP removal in wastewater. The findings of this study solidify previous observation of enhancement of both TP and TN removal by adding Fe(II) in denitrification, and would be helpful for developing cost-effective pollutant removal processes.
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Affiliation(s)
- Hang Ma
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Xinlei Gao
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China; Guangdong Water Co., Ltd, Shenzhen, 518021, China
| | - Yihua Chen
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Jiaxin Zhu
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China
| | - Tongzhou Liu
- Harbin Institute of Technology (Shenzhen), Shenzhen, 518055, PR China.
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13
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Sobhi M, Gaballah MS, Han T, Cui X, Li B, Sun H, Guo J, Dong R. Nutrients recovery from fresh liquid manure through an airlift reactor to mitigate the greenhouse gas emissions of open anaerobic lagoons. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2021; 294:112956. [PMID: 34126527 DOI: 10.1016/j.jenvman.2021.112956] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 03/17/2021] [Accepted: 05/29/2021] [Indexed: 06/12/2023]
Abstract
Open anaerobic lagoons are widely used for liquid manure storage and treatment, with excess greenhouse gas (GHG) and odor emissions. In this study, liquid manure was valorized through hybrid nitrogen and phosphorous recovery as value-added products using an airlift reactor. Also, the organic load of liquid manure was reduced before discharging into anaerobic lagoons, which simultaneously mitigated GHG emissions. The results showed that 14.5% of total nitrogen (TN) was recovered as ammonium sulfate, while 38.8% of TN and 79.3% of total phosphorus (TP) were recovered as phosphorus-rich sludge. After the pre-treatment in the reactor, the odor could be controlled effectively due to a 94.2% decrease in total VFAs. In addition, 59.0% of COD was removed, which decreased the theoretical modeled GHG emissions by 51.7% compared to the traditional direct discharging. The application is promising for upgrading anaerobic lagoons of liquid manure.
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Affiliation(s)
- Mostafa Sobhi
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China; Agricultural and Bio-systems Engineering Department, Faculty of Agriculture, Alexandria University, Alexandria, Egypt
| | - Mohamed S Gaballah
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China
| | - Tongtong Han
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China
| | - Xian Cui
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China
| | - Bowen Li
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China
| | - Hui Sun
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China
| | - Jianbin Guo
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China.
| | - Renjie Dong
- College of Engineering (Key Laboratory for Clean Renewable Energy Utilization Technology, Ministry of Agriculture), China Agricultural University, Beijing, 100083, PR China; Yantai Institute, China Agricultural University, Yantai, 264032, Shandong, PR China
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14
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Metagenomic Characterization of Soil Microbial Communities in the Luquillo Experimental Forest (Puerto Rico) and Implications for Nitrogen Cycling. Appl Environ Microbiol 2021; 87:e0054621. [PMID: 33837013 DOI: 10.1128/aem.00546-21] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The phylogenetic and functional diversities of microbial communities in tropical rainforests and how these differ from those of temperate communities remain poorly described but are directly related to the increased fluxes of greenhouse gases such as nitrous oxide (N2O) from the tropics. Toward closing these knowledge gaps, we analyzed replicated shotgun metagenomes representing distinct life zones and an elevation gradient from four locations in the Luquillo Experimental Forest (LEF), Puerto Rico. These soils had a distinct microbial community composition and lower species diversity compared to those of temperate grasslands or agricultural soils. In contrast to the overall distinct community composition, the relative abundances and nucleotide sequences of N2O reductases (nosZ) were highly similar between tropical forest and temperate soils. However, respiratory NO reductase (norB) was 2-fold more abundant in the tropical soils, which might be relatable to their greater N2O emissions. Nitrogen fixation (nifH) also showed higher relative abundance in rainforest than in temperate soils, i.e., 20% versus 0.1 to 0.3% of bacterial genomes in each soil type harbored the gene, respectively. Finally, unlike temperate soils, LEF soils showed little stratification with depth in the first 0 to 30 cm, with ∼45% of community composition differences explained solely by location. Collectively, these results advance our understanding of spatial diversity and metabolic repertoire of tropical rainforest soil communities and should facilitate future ecological studies of these ecosystems. IMPORTANCE Tropical rainforests are the largest terrestrial sinks of atmospheric CO2 and the largest natural source of N2O emissions, two greenhouse gases that are critical for the climate. The microbial communities of rainforest soils that directly or indirectly, through affecting plant growth, contribute to these fluxes remain poorly described by cultured-independent methods. To close this knowledge gap, the present study applied shotgun metagenomics to samples selected from three distinct life zones within the Puerto Rico rainforest. The results advance our understanding of microbial community diversity in rainforest soils and should facilitate future studies of natural or manipulated perturbations of these critical ecosystems.
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15
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Guo H, Han S, Lee DJ. Genomic studies on natural and engineered aquatic denitrifying eco-systems: A research update. BIORESOURCE TECHNOLOGY 2021; 326:124740. [PMID: 33497924 DOI: 10.1016/j.biortech.2021.124740] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 01/12/2021] [Accepted: 01/14/2021] [Indexed: 06/12/2023]
Abstract
Excess nitrogenous compounds in municipal or industrial wastewaters can stimulate growth of denitrifying bacteria, in return, to convert potentially hazardous nitrate to inorganic nitrogen gas. To explore the community structure, distributions and succession of functional strains, and their interactions with other microbial communities, contemporary studies were performed based on detailed genomic analysis. This mini-review updated contemporary genomic studies on denitrifying genes in natural and engineered aquatic systems, with the constructed wetlands being the demonstrative system for the latter. Prospects for the employment of genomic studies on denitrifying systems for process design, optimization and development of novel denitrifying processes were discussed.
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Affiliation(s)
- Hongliang Guo
- College of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Song Han
- College of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Duu-Jong Lee
- Department of Chemical Engineering, National Taiwan University, Taipei 10617, Taiwan; College of Technology and Engineering, National Taiwan Normal University, Taipei 10610, Taiwan; College of Engineering, Tunghai University, Taichung 40070, Taiwan.
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16
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Wu B, Zhou M, Song L, Xu Q, Dai X, Chai X. Mechanism insights into polyhydroxyalkanoate-regulated denitrification from the perspective of pericytoplasmic nitrate reductase expression. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:142083. [PMID: 32920393 DOI: 10.1016/j.scitotenv.2020.142083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2020] [Revised: 08/27/2020] [Accepted: 08/28/2020] [Indexed: 06/11/2023]
Abstract
For enhanced biological nutrient removal (BNR) process, the polyhydroxyalkanoate (PHA) can be used as an eco-friendly internal as well as external substrate for regulating the growth of heterotrophic denitrifiers and promoting the denitrification process for deep nitrogen removal from wastewater. However, the exact mechanisms by which PHA impacts bacterial metabolism and affects the electron transfer of denitrification remain unknown. In this study, the in-depth mechanism investigation for PHA-mediated denitrification based on the jointly applied transcriptomic, proteomic and Western Blotting techniques was performed on a model denitrifier, Pseudomonas stutzeri. Results showed that PHA dramatically fostered the growth of Pseudomonas stutzeri, resulting in improved nitrate removal efficiency from 32.8% to 45.8%. Comparison of protein expression profiles indicated that PHA promoted the expression of enzyme NapB and NapA by approximately 10.34 and 20.01 times, respectively, which were both in charge of reduction from nitrate to nitrite. Based on transcriptional sequencing and Tandem Mass Tags, the correlation results also showed that differential proteins and genes with the same expression trend were positively correlated (R2 = 0.427, p-value<0.033). Western Blotting approach was further developed to confirm the up-regulated expression of target protein with the higher proportion of PHA in carbon source of the medium, which proved the reliability of proteomics results. All the findings presented here are believed to deepen the understanding of microbial mechanism about PHA-enhanced denitrification from the novel perspective of associated electron-transfer enzymatic proteins.
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Affiliation(s)
- Boran Wu
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Meng Zhou
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Liyan Song
- Environmental Microbiology and Ecology Research Center, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Science (CAS), 266 Fangzheng Avenue, Chongqing 400714, China
| | - Qinqin Xu
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Xiaohu Dai
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
| | - Xiaoli Chai
- State Key Laboratory of Pollution Control and Resource Reuse, College of Environmental Science and Engineering, Tongji University, 1239 Siping Road, Shanghai 200092, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, China.
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17
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Corrochano-Monsalve M, González-Murua C, Bozal-Leorri A, Lezama L, Artetxe B. Mechanism of action of nitrification inhibitors based on dimethylpyrazole: A matter of chelation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 752:141885. [PMID: 32890835 DOI: 10.1016/j.scitotenv.2020.141885] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 08/19/2020] [Accepted: 08/20/2020] [Indexed: 05/25/2023]
Abstract
In agriculture, the applied nitrogen (N) can be lost in the environment in different forms because of microbial transformations. It is of special concern the nitrate (NO3-) leaching and the nitrous oxide (N2O) emissions, due to their negative environmental impacts. Nitrification inhibitors (NIs) based on dimethylpyrazole (DMP) are applied worldwide in order to reduce N losses. These compounds delay ammonium (NH4+) oxidation by inhibiting ammonia-oxidizing bacteria (AOB) growth. However, their mechanism of action has not been demonstrated, which represent an important lack of knowledge to use them correctly. In this work, through chemical and biological analysis, we unveil the mechanism of action of the commonly applied 3,4-dimethyl-1H-pyrazole dihydrogen phosphate (DMPP) and the new DMP-based NI, 2-(3,4-dimethyl-1H-pyrazol-1-yl)-succinic acid (DMPSA). Our results show that DMP and DMPSA form complexes with copper (Cu2+) cations, an indispensable cofactor in the nitrification pathway. Three coordination compounds namely [Cu(DMP)4Cl2] (CuDMP1), [Cu(DMP)4SO4]n (CuDMP2) and [Cu(DMPSA)2]·H2O (CuDMPSA) have been synthesized and chemical and structurally characterized. The CuDMPSA complex is more stable than those containing DMP ligands; however, both NIs show the same nitrification inhibition efficiency in soils with different Cu contents, suggesting that the active specie in both cases is DMP. Our soil experiment reveals that the usual application dose is enough to inhibit nitrification within the range of Cu and Zn contents present in agricultural soils, although their effects vary depending on the content of these elements. As a result of AOB inhibition by these NIs, N2O-reducing bacteria seem to be beneficed in Cu-limited soils due to a reduction in the competence. This opens up the possibility to induce N2O reduction to N2 through Cu fertilization. On the other hand, when fertilizing with micronutrients such as Cu and Zn, the use of NIs could be beneficial to counteract the increase of nitrification derived from their application.
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Affiliation(s)
- Mario Corrochano-Monsalve
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain.
| | - Carmen González-Murua
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain
| | - Adrián Bozal-Leorri
- Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain
| | - Luis Lezama
- Department of Inorganic Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain
| | - Beñat Artetxe
- Department of Inorganic Chemistry, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa, Spain
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18
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Chen Q, Fan J, Ming H, Su J, Wang Y, Wang B. Effects of environmental factors on denitrifying bacteria and functional genes in sediments of Bohai Sea, China. MARINE POLLUTION BULLETIN 2020; 160:111621. [PMID: 32919123 DOI: 10.1016/j.marpolbul.2020.111621] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 08/24/2020] [Accepted: 08/25/2020] [Indexed: 06/11/2023]
Abstract
The ability of denitrifying microorganisms to respond to different ecological pressures remains unknown, especially in marine sediments rich in various heavy metals. Here, gene abundance and transcriptional abundance of five functional denitrification genes (narG, nirK, nirS, norB, and nosZ) in Bohai Sea sediments were examined, and high-throughput Illumina sequencing was used to analyze the community structure of nirK and nirS denitrifying bacteria. The nirS- and nirK-type denitrifying bacteria were classified into different genera. The heavy metal content in sediments was negatively correlated with transcriptional abundance of denitrifying genes, and RNA: DNA ratio for each gene was highest in central Bohai Sea. These results indicated the distribution of nitrite reductase denitrifying bacterial communities was affected by depth, total nitrogen, total phosphorus and sediment grain size. Heavy metal contamination in sediment environment may negatively regulate the transcriptional abundance of denitrifying genes and cause geographical differences in the denitrifying bacterial community structure.
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Affiliation(s)
- Quanrui Chen
- National Marine Environmental Monitoring Center, Dalian 116023, China; Xiamen University, Xiamen 361000, China
| | - Jingfeng Fan
- National Marine Environmental Monitoring Center, Dalian 116023, China.
| | - Hongxia Ming
- National Marine Environmental Monitoring Center, Dalian 116023, China
| | - Jie Su
- National Marine Environmental Monitoring Center, Dalian 116023, China
| | - Yantao Wang
- National Marine Environmental Monitoring Center, Dalian 116023, China; Dalian Ocean University, Dalian 116000, China
| | - Bin Wang
- Dalian Ocean University, Dalian 116000, China
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19
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Cheng HH, Pien TT, Lee YC, Lu IC, Whang LM. Effects of copper on biological treatment of NMF- and MDG-containing wastewater from TFT-LCD industry. CHEMOSPHERE 2020; 258:127125. [PMID: 32540540 DOI: 10.1016/j.chemosphere.2020.127125] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 05/14/2020] [Accepted: 05/18/2020] [Indexed: 06/11/2023]
Abstract
This study aimed to evaluate the effects of copper on N-methylformamide (NMF)- and methyl diglycol (MDG)-containing wastewater treatment using batch experiments and a lab-scale anoxic-oxic (A/O) sequencing batch reactor (SBR). Batch experimental results indicated that aerobic degradation of NMF followed Monod-type kinetics. Copper inhibition on nitrification also followed Monod-type inhibition kinetics with copper-to-biomass ratio instead of copper concentration. Specific degradation rates of NMF and MDG under both aerobic and anoxic conditions decreased in the matrix of full-scale wastewater, and high copper dosage would further reduce the degradation rates. In the long-term presence of 0.5 mg/L copper, the A/O SBR could maintain stable and complete degradations of NMF and MDG, 95% of COD removal, and more than 50% of total nitrogen (TN) removal. High concentrations of copper spikes, including 40 mg/L and 110 mg/L, slowed down degradation rates for both NMF and MDG, but did not affect COD and TN removal efficiencies in the full 24 h-cycle operation. The long-term A/O SBR operation revealed that daily dosage of 0.5 mg/L copper was not detrimental to NMF/MDG degradations due to regularly wasting sludge, but 110 mg/L of copper spike obviously reduced NMF/MDG degradation rate although it could be recovered later by regularly wasting sludge and maintaining SRT at 20 days.
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Affiliation(s)
- Hai-Hsuan Cheng
- Department of Environmental Engineering, National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan
| | - Tzung-Tsin Pien
- Department of Environmental Engineering, National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan
| | - Ya-Ching Lee
- Department of Environmental Engineering, National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan
| | - I-Chun Lu
- Department of Environmental Engineering, National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan
| | - Liang-Ming Whang
- Department of Environmental Engineering, National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan; Sustainable Environment Research Laboratory (SERL), National Cheng Kung University (NCKU), No. 1, University Road, Tainan, 701, Taiwan.
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20
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Giannopoulos G, Hartop KR, Brown BL, Song B, Elsgaard L, Franklin RB. Trace Metal Availability Affects Greenhouse Gas Emissions and Microbial Functional Group Abundance in Freshwater Wetland Sediments. Front Microbiol 2020; 11:560861. [PMID: 33117308 PMCID: PMC7561414 DOI: 10.3389/fmicb.2020.560861] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Accepted: 08/24/2020] [Indexed: 12/14/2022] Open
Abstract
We investigated the effects of trace metal additions on microbial nitrogen (N) and carbon (C) cycling using freshwater wetland sediment microcosms amended with micromolar concentrations of copper (Cu), molybdenum (Mo), iron (Fe), and all combinations thereof. In addition to monitoring inorganic N transformations (NO3 -, NO2 -, N2O, NH4 +) and carbon mineralization (CO2, CH4), we tracked changes in functional gene abundance associated with denitrification (nirS, nirK, nosZ), dissimilatory nitrate reduction to ammonium (DNRA; nrfA), and methanogenesis (mcrA). With regards to N cycling, greater availability of Cu led to more complete denitrification (i.e., less N2O accumulation) and a higher abundance of the nirK and nosZ genes, which encode for Cu-dependent reductases. In contrast, we found sparse biochemical evidence of DNRA activity and no consistent effect of the trace metal additions on nrfA gene abundance. With regards to C mineralization, CO2 production was unaffected, but the amendments stimulated net CH4 production and Mo additions led to increased mcrA gene abundance. These findings demonstrate that trace metal effects on sediment microbial physiology can impact community-level function. We observed direct and indirect effects on both N and C biogeochemistry that resulted in increased production of greenhouse gasses, which may have been mediated through the documented changes in microbial community composition and shifts in functional group abundance. Overall, this work supports a more nuanced consideration of metal effects on environmental microbial communities that recognizes the key role that metal limitation plays in microbial physiology.
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Affiliation(s)
- Georgios Giannopoulos
- Department of Biology, Virginia Commonwealth University, Richmond, VA, United States
| | - Katherine R Hartop
- Department of Biology, Virginia Commonwealth University, Richmond, VA, United States
| | - Bonnie L Brown
- Department of Biological Sciences, University of New Hampshire, Durham, NH, United States
| | - Bongkeun Song
- Department of Biological Sciences, Virginia Institute of Marine Science, College of William & Mary, Gloucester Point, VA, United States
| | - Lars Elsgaard
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | - Rima B Franklin
- Department of Biology, Virginia Commonwealth University, Richmond, VA, United States
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21
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Song W, Qi R, Zhao L, Xue N, Wang L, Yang Y. Bacterial community rather than metals shaping metal resistance genes in water, sediment and biofilm in lakes from arid northwestern China. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 254:113041. [PMID: 31421577 DOI: 10.1016/j.envpol.2019.113041] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 07/26/2019] [Accepted: 08/09/2019] [Indexed: 05/25/2023]
Abstract
Lakes in arid northwestern China are valuable freshwater resources that drive socioeconomic development. Environmental pollution can significantly influence the composition of microbial communities and the distribution of functional genes in lakes. This study investigated heavy metal pollution to identify possible correlations with metal resistance genes (MRGs) and bacterial community composition in water, sediment and biofilm samples from Bosten Lake and Ebi Lake in northwestern China. High levels of zinc were detected in all samples. However, the metals detected in the sediment samples of both lakes were determined to be at low risk levels according to an ecological index. The mercury resistance gene subtype merP had the greatest average abundance (4.61 × 10-3 copies per 16S rRNA) among all the samples, followed by merA and merC. The high abundance of merA in the pelagic zone rather than in benthic sediment suggests that the pelagic microbial community was important in mercury reduction. Proteobacteria were the main phylum found in the microbial communities in all samples. However, microbial communities in most of the water, sediment and biofilm samples had different compositions, indicating that the habitat niche plays an important role in shaping the bacterial communities in lakes. The microbial community, rather than the heavy metals, was the main driver of MRG distribution. The abundances of some bacterial genera involved in the decomposition of organic matter and the terrestrial nitrogen cycle were negatively correlated with heavy metals. This result suggests that metal pollution can adversely affect the biogeochemical processes that occur in lakes.
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Affiliation(s)
- Wenjuan Song
- State Key Laboratory of Desert & Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; University of Chinese Academy of Science, Beijing, 100049, China.
| | - Ran Qi
- Chinese People's Armed Police Golden Headquarters, Beijing, 100055, China
| | - Li Zhao
- State Key Laboratory of Desert & Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | - Nana Xue
- State Key Laboratory of Desert & Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; University of Chinese Academy of Science, Beijing, 100049, China
| | - Liyi Wang
- State Key Laboratory of Desert & Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; University of Chinese Academy of Science, Beijing, 100049, China
| | - Yuyi Yang
- University of Chinese Academy of Science, Beijing, 100049, China; Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China; School of Life Sciences, University of Dundee, Dundee, DD1 5EH, Scotland, UK.
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22
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Lu Z, Gan L, Lin J, Chen Z. Aerobic denitrification by Paracoccus sp. YF1 in the presence of Cu(II). THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 658:80-86. [PMID: 30572217 DOI: 10.1016/j.scitotenv.2018.12.225] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2018] [Revised: 12/04/2018] [Accepted: 12/14/2018] [Indexed: 06/09/2023]
Abstract
This study of Cu(II)'s impact on aerobic denitrification of Paracoccus sp. YF1 revealed that the denitrification rate decreased markedly from 99.8%, 98.0%, 68.7% to 16.3% when the concentrations of Cu(II) rose from 0, 0.01 mM, 0.05 mM to 0.1 mM, respectively. This outcome was confirmed by the successful test of OD600, total protein and enzyme activities. As the concentration of Cu(II) increased from 0 to 0.1 mM, the total protein contents declined over a period of 48 h, and the activities of nitrate reductase (NR) and nitrite reductase (NIR) decreased remarkably during the first 24 h in a NO3- sufficient state. Meanwhile, the reduction of NO3- and NO2- was positively correlated with the expression level of NR and NIR. The removal rate of nitrate in the control treatment and different concentration of Cu(II) treatment fitted approximately to the zero-order model. Scanning electron microscopy (SEM) confirmed that the cell surfaces of Paracoccus sp. YF1 were disrupted when exposed to 0.1 mM Cu(II). The adsorption of Cu(II) onto the cells' surface was confirmed by Energy dispersive spectrometer (EDS), Fourier transform infrared spectra (FTIR), and X-ray photoelectron spectroscopy analysis (XPS). The insights obtained here regarding the influence of Cu(II) on aerobic denitrification will be of great significance for the treatment of heavy metals and nitrite co-existing sewage.
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Affiliation(s)
- Zeyang Lu
- Fujian Province Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Fujian Normal University, Fuzhou 350007, Fujian Province, China
| | - Li Gan
- Fujian Province Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Fujian Normal University, Fuzhou 350007, Fujian Province, China
| | - Jiajiang Lin
- Fujian Province Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Fujian Normal University, Fuzhou 350007, Fujian Province, China
| | - Zuliang Chen
- Fujian Province Key Laboratory of Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Fujian Normal University, Fuzhou 350007, Fujian Province, China.
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23
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Characteristics of Heterotrophic Nitrifying and Aerobic Denitrifying Arthrobacter nicotianae D51 Strain in the Presence of Copper. WATER 2019. [DOI: 10.3390/w11030434] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A heterotrophic nitrification and aerobic denitrification bacterium, strain D51, was identified as Arthrobacter nicotianae based on morphological, phospholipid fatty acids (PLFAs), and 16S rRNA gene sequence analyses. Further tests demonstrated that strain D51 had the capability to use nitrite, nitrate, or ammonium as the sole nitrogen source in the presence of Cu2+. The maximum removal efficiencies of nitrite, nitrate and ammonium were 68.97%, 78.32%, and 98.70%, respectively. Additionally, the maximum growth rate and denitrification capacity of this strain occurred in the presence of 0.05 mg·L−1 of Cu2+.However, the growth and aerobic denitrification capacity were intensively inhibited by Cu2+ at ≥0.1 mg·L−1. Moreover, gas chromatography indicated that a portion of the nitrogen was transformed into N2O when the nitrite, nitrate, and ammonium were separately used as the sole nitrogen source. This is the first study of the nitrification and denitrification ability of Arthrobacter nicotianae under aerobic conditions, and the first experiment to investigate the impact of Cu2+ concentration on the growth and denitrification ability of this bacteria. The results presented herein extend the known varieties of heterotrophic nitrifying–aerobic denitrifying bacteria and provide useful information regarding the specific bacteria for nitrogen bioremediation of industrial wastewater containing Cu2+.
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24
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Stewart LJ, Thaqi D, Kobe B, McEwan AG, Waldron KJ, Djoko KY. Handling of nutrient copper in the bacterial envelope. Metallomics 2019; 11:50-63. [DOI: 10.1039/c8mt00218e] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The insertion of copper into bacterial cuproenzymesin vivodoes not always require a copper-binding metallochaperone – why?
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Affiliation(s)
- Louisa J. Stewart
- Institute for Cell and Molecular Biosciences
- Newcastle University
- Newcastle upon Tyne
- UK
| | - Denis Thaqi
- School of Chemistry and Molecular Biosciences and Australian Infectious Diseases Research Centre
- The University of Queensland
- St Lucia
- Australia
| | - Bostjan Kobe
- School of Chemistry and Molecular Biosciences and Australian Infectious Diseases Research Centre
- The University of Queensland
- St Lucia
- Australia
- Institute for Molecular Bioscience
| | - Alastair G. McEwan
- School of Chemistry and Molecular Biosciences and Australian Infectious Diseases Research Centre
- The University of Queensland
- St Lucia
- Australia
| | - Kevin J. Waldron
- Institute for Cell and Molecular Biosciences
- Newcastle University
- Newcastle upon Tyne
- UK
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25
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Wen D, Chang NB, Wanielista MP. Comparative copper toxicity impact and enzymatic cascade effect on Biosorption Activated Media and woodchips for nutrient removal in stormwater treatment. CHEMOSPHERE 2018; 213:403-413. [PMID: 30243206 DOI: 10.1016/j.chemosphere.2018.09.062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 09/10/2018] [Accepted: 09/11/2018] [Indexed: 06/08/2023]
Abstract
Copper, a commonly occurring heavy metal in stormwater runoff, was tested for its inhibitory effects on key nitrogen cycle bacteria in Biosorption Activated Media (BAM) and woodchip. The information in this paper is used to show that copper can enhance the denitrification process through enzyme cascade reactions since nitrous reductase is the enzyme responsible for the last step of denitrification and is largely dependent on copper as its cofactor. However, media characteristics are critical for assessing multi-enzymatic cascade reactions from the microbial ecology point of view. Moreover, both media showed significant copper removal through various mechanisms at 30 cm depth. The bioactivity evaluation indicates that other bacteria (fermentative bacteria, etc.) can be largely depressed with the presence of copper, hence the biofilm structure would be more vulnerable under shearing effects, which may result in holistic depression on the microbial community.
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Affiliation(s)
- Dan Wen
- Department of Civil, Environmental, and Construction Engineering Department, University of Central Florida, Orlando, FL, USA
| | - Ni-Bin Chang
- Department of Civil, Environmental, and Construction Engineering Department, University of Central Florida, Orlando, FL, USA.
| | - Martin P Wanielista
- Department of Civil, Environmental, and Construction Engineering Department, University of Central Florida, Orlando, FL, USA
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26
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Wang Y, Wang Z, Duo Y, Wang X, Chen J, Chen J. Gene cloning, expression, and reducing property enhancement of nitrous oxide reductase from Alcaligenes denitrificans strain TB. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 239:43-52. [PMID: 29649759 DOI: 10.1016/j.envpol.2018.04.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Revised: 03/14/2018] [Accepted: 04/01/2018] [Indexed: 06/08/2023]
Abstract
Nitrous oxide (N2O) is a potent greenhouse gas and tends to accumulate as an intermediate in the process of bacteria denitrification. To achieve complete reduction of nitrogen oxide (NOx) in bacteria denitrification, the structural gene nosZ encoding nitrous oxide reductase (N2OR) was cloned from Alcaligenes denitrificans strain TB (GenBank JQ044686). The recombinant plasmid containing the nosZ gene was built, and the expression of nosZ gene in Escherichia coli was determined. Results show that the nosZ gene consisting of 1917 nucleotides achieves heterologous expression successfully by codon optimization strategy under optimal conditions (pre-induction inoculum OD600 of 0.67, final IPTG concentration of 0.5 mM, inducing time of 6 h, and inducing temperature of 28 °C). Determination result of gas chromatography confirms that N2O degradation efficiency of recombinant E. coli is strengthened by at least 1.92 times compared with that of original strain TB when treated with N2O as substrate. Moreover, N2OR activity in recombinant strain is 2.09 times higher than that in wild strain TB, which validates the aforementioned result and implies that the recombinant E. coli BL21 (DE3)-pET28b-nosZ is a potential candidate to control N2O accumulation and alleviate greenhouse effect. In addition, the N2OR structure and the possible N2O binding site in Alcaligenes sp. TB are predicted, which open an avenue for further research on the relationship between N2OR activity and its structure.
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Affiliation(s)
- Yu Wang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, PR China
| | - Zeyu Wang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, PR China
| | - Yankai Duo
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, PR China
| | - Xiaoping Wang
- College of Environment, Zhejiang University of Technology, Hangzhou 310014, PR China
| | - Jianmeng Chen
- Engineering Research Center of the Ministry of Education for Bioconversion and Biopurification, Zhejiang University of Technology, Hangzhou 310014, PR China
| | - Jun Chen
- Engineering Research Center of the Ministry of Education for Bioconversion and Biopurification, Zhejiang University of Technology, Hangzhou 310014, PR China.
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27
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Suenaga T, Riya S, Hosomi M, Terada A. Biokinetic Characterization and Activities of N 2O-Reducing Bacteria in Response to Various Oxygen Levels. Front Microbiol 2018; 9:697. [PMID: 29692767 PMCID: PMC5902568 DOI: 10.3389/fmicb.2018.00697] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 03/26/2018] [Indexed: 11/13/2022] Open
Abstract
Nitrous oxide (N2O)-reducing bacteria, which reduce N2O to nitrogen in the absence of oxygen, are phylogenetically spread throughout various taxa and have a potential role as N2O sinks in the environment. However, research on their physiological traits has been limited. In particular, their activities under microaerophilic and aerobic conditions, which severely inhibit N2O reduction, remain poorly understood. We used an O2 and N2O micro-respirometric system to compare the N2O reduction kinetics of four strains, i.e., two strains of an Azospira sp., harboring clade II type nosZ, and Pseudomonas stutzeri and Paracoccus denitrificans, harboring clade I type nosZ, in the presence and absence of oxygen. In the absence of oxygen, the highest N2O-reducing activity, Vm,N2O, was 5.80 ± 1.78 × 10-3 pmol/h/cell of Azospira sp. I13, and the highest and lowest half-saturation constants were 34.8 ± 10.2 μM for Pa. denitirificans and 0.866 ± 0.29 μM for Azospira sp. I09. Only Azospira sp. I09 showed N2O-reducing activity under microaerophilic conditions at oxygen concentrations below 110 μM, although the activity was low (10% of Vm,N2O). This trait is represented by the higher O2 inhibition coefficient than those of the other strains. The activation rates of N2O reductase, which describe the resilience of the N2O reduction activity after O2 exposure, differ for the two strains of Azospira sp. (0.319 ± 0.028 h-1 for strain I09 and 0.397 ± 0.064 h-1 for strain I13) and Ps. stutzeri (0.200 ± 0.013 h-1), suggesting that Azospira sp. has a potential for rapid recovery of N2O reduction and tolerance against O2 inhibition. These physiological characteristics of Azospira sp. can be of promise for mitigation of N2O emission in industrial applications.
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Affiliation(s)
- Toshikazu Suenaga
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Koganei, Japan
| | - Shohei Riya
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Koganei, Japan
| | - Masaaki Hosomi
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Koganei, Japan
| | - Akihiko Terada
- Department of Chemical Engineering, Tokyo University of Agriculture and Technology, Koganei, Japan
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28
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Saarenheimo J, Aalto SL, Rissanen AJ, Tiirola M. Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments. Front Microbiol 2017; 8:750. [PMID: 28487691 PMCID: PMC5403825 DOI: 10.3389/fmicb.2017.00750] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 04/12/2017] [Indexed: 12/27/2022] Open
Abstract
Despite high performance, municipal wastewater treatment plants (WWTPs) still discharge significant amounts of organic material and nitrogen and even microbes into the receiving water bodies, altering physico-chemical conditions and microbial functions. In this study, we examined how nitrified wastewater affects the microbiology of boreal lake sediments. Microbial community compositions were assessed with next generation sequencing of the 16S rRNA gene, and a more detailed view on nitrogen transformation processes was gained with qPCR targeting on functional genes (nirS, nirK, nosZI, nosZII, amoAarchaea, and amoAbacteria). In both of the two studied lake sites, the microbial community composition differed significantly between control point and wastewater discharge point, and a gradual shift toward natural community composition was seen downstream following the wastewater gradient. SourceTracker analysis predicted that ∼2% of sediment microbes were of WWTP-origin on the study site where wastewater was freely mixed with the lake water, while when wastewater was specially discharged to the sediment surface, ∼6% of microbes originated from WWTP, but the wastewater-influenced area was more limited. In nitrogen transformation processes, the ratio between nitrifying archaea (AOA) and bacteria (AOB) was affected by wastewater effluent, as the AOA abundance decreased from the control point (AOA:AOB 28:1 in Keuruu, 11:1 in Petäjävesi) to the wastewater-influenced sampling points, where AOB dominated (AOA:AOB 1:2–1:15 in Keuruu, 1:3–1:19 in Petäjävesi). The study showed that wastewater can affect sediment microbial community through importing nutrients and organic material and altering habitat characteristics, but also through bringing wastewater-originated microbes to the sediment, and may thus have significant impact on the freshwater biogeochemistry, especially in the nutrient-poor boreal ecosystems.
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Affiliation(s)
- Jatta Saarenheimo
- Department of Biological and Environmental Science, University of JyväskyläJyväskylä, Finland
| | - Sanni L Aalto
- Department of Biological and Environmental Science, University of JyväskyläJyväskylä, Finland
| | - Antti J Rissanen
- Laboratory of Chemistry and Bioengineering, Tampere University of TechnologyTampere, Finland
| | - Marja Tiirola
- Department of Biological and Environmental Science, University of JyväskyläJyväskylä, Finland
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29
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Yin G, Hou L, Liu M, Zheng Y, Li X, Lin X, Gao J, Jiang X, Wang R, Yu C. Effects of multiple antibiotics exposure on denitrification process in the Yangtze Estuary sediments. CHEMOSPHERE 2017; 171:118-125. [PMID: 28012383 DOI: 10.1016/j.chemosphere.2016.12.068] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2016] [Revised: 10/31/2016] [Accepted: 12/14/2016] [Indexed: 06/06/2023]
Abstract
Denitrification is a dominant reactive nitrogen removal pathway in most estuarine and coastal ecosystems, and plays a significant role in regulating N2O release. Although multiple antibiotics residues are widely detected in aquatic environment, combined effects of antibiotics on denitrification remain indistinct. In this work, 5 classes of antibiotics (sulfonamides, chloramphenicols, tetracyclines, macrolides, and fluoroquinolones) were selected to conduct orthogonal experiments in order to explore their combined effects on denitrification. 15N-based denitrification and N2O release rates were determined in the orthogonal experiments, while denitrifying functional genes were examined to illustrate the microbial mechanism of the combined antibiotics effect. Denitrification rates were inhibited by antibiotics treatments, and synergistic inhibition effect was observed for multiple antibiotics exposure. Different classes of antibiotics had different influence on N2O release rates, but multiple antibiotics exposure mostly led to stimulatory effect. Abundances of denitrifying functional genes were inhibited by multiple antibiotics exposure due to the antimicrobial properties, and different inhibition on denitrifiers may be the major mechanism for the variations of N2O release rates. Combined effects of antibiotics on denitrification may lead to nitrate retention and N2O release in estuarine and coastal ecosystems, and consequently cause cascading environmental problems, such as greenhouse effects and hyper-eutrophication.
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Affiliation(s)
- Guoyu Yin
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China.
| | - Min Liu
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China
| | - Xiaofei Li
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China
| | - Xianbiao Lin
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China
| | - Juan Gao
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China
| | - Xiaofen Jiang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China
| | - Rong Wang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China
| | - Chendi Yu
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200062, China
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30
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Effect of NaCl on aerobic denitrification by strain Achromobacter sp. GAD-3. Appl Microbiol Biotechnol 2017; 101:5139-5147. [DOI: 10.1007/s00253-017-8191-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Revised: 02/08/2017] [Accepted: 02/10/2017] [Indexed: 10/20/2022]
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31
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Gokal J, Awolusi OO, Enitan AM, Kumari S, Bux F. Chapter 4 Molecular Characterization and Quantification of Microbial Communities in Wastewater Treatment Systems. Microb Biotechnol 2016. [DOI: 10.1201/9781315367880-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
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32
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Effects of heavy metals on aerobic denitrification by strain Pseudomonas stutzeri PCN-1. Appl Microbiol Biotechnol 2016; 101:1717-1727. [DOI: 10.1007/s00253-016-7984-8] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 10/31/2016] [Accepted: 11/02/2016] [Indexed: 11/26/2022]
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33
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Black A, Hsu PCL, Hamonts KE, Clough TJ, Condron LM. Influence of copper on expression of nirS, norB and nosZ and the transcription and activity of NIR, NOR and N2 OR in the denitrifying soil bacteria Pseudomonas stutzeri. Microb Biotechnol 2016; 9:381-8. [PMID: 26935976 PMCID: PMC4835574 DOI: 10.1111/1751-7915.12352] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Accepted: 01/24/2016] [Indexed: 11/27/2022] Open
Abstract
Reduction of the potent greenhouse gas nitrous oxide (N(2)O) occurs in soil environments by the action of denitrifying bacteria possessing nitrous oxide reductase (N(2)OR), a dimeric copper (Cu)-dependent enzyme producing environmentally benign dinitrogen (N(2)). We examined the effects of increasing Cu concentrations on the transcription and activity of nitrite reductase (NIR), nitric oxide reductase (NOR) and N2 OR in Pseudomonas stutzeri grown anaerobically in solution over a 10-day period. Gas samples were taken on a daily basis and after 6 days, bacterial RNA was recovered to determine the expression of nirS, norB and nosZ encoding NIR, NOR and N(2)OR respectively. Results revealed that 0.05 mM Cu caused maximum conversion of N(2)O to N(2) via bacterial reduction of N(2)O. As soluble Cu generally makes up less than 0.001% of total soil Cu, extrapolation of 0.05 mg l(-l) soluble Cu would require soils to have a total concentration of Cu in the range of, 150-200 μg g(-1) to maximize the proportion of N(2)O reduced to N(2). Given that many intensively farmed agricultural soils are deficient in Cu in terms of plant nutrition, providing a sufficient concentration of biologically accessible Cu could provide a potentially useful microbial-based strategy of reducing agricultural N(2)O emissions.
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Affiliation(s)
- Amanda Black
- Bio Protection Research Centre, Lincoln University, PO Box 85084, Lincoln, Christchurch, 7647, New Zealand
| | - Pei-Chun L Hsu
- Bio Protection Research Centre, Lincoln University, PO Box 85084, Lincoln, Christchurch, 7647, New Zealand
| | - Kelly E Hamonts
- Bio Protection Research Centre, Lincoln University, PO Box 85084, Lincoln, Christchurch, 7647, New Zealand
- Hawkesbury Institute for the Environment, University of Western Sydney, Locked Bag 1797, Penrith, NSW, 2751, Australia
| | - Tim J Clough
- Faculty of Agriculture and Life Sciences, Lincoln University, PO Box 85084, Lincoln, Christchurch, 7647, New Zealand
| | - Leo M Condron
- Faculty of Agriculture and Life Sciences, Lincoln University, PO Box 85084, Lincoln, Christchurch, 7647, New Zealand
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