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Dairain A, Voet H, Vafeiadou AM, De Meester N, Rigaux A, Van Colen C, Vanaverbeke J, Moens T. Structurally stable but functionally disrupted marine microbial communities under a future climate change scenario: Potential importance for nitrous oxide emissions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 907:167928. [PMID: 37863213 DOI: 10.1016/j.scitotenv.2023.167928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 10/05/2023] [Accepted: 10/16/2023] [Indexed: 10/22/2023]
Abstract
The blue mussel Mytilus edulis is a widespread and abundant bivalve species along the North Sea with high economic and ecological importance as an engineer species. The shell of mussels is intensively colonized by microbial organisms that can produce significant quantities of nitrous oxide (N2O), a potent greenhouse gas. To characterize the impacts of climate change on the composition, structure and functioning of microbial biofilms on the shell surface of M. edulis, we experimentally exposed them to orthogonal combinations of increased seawater temperature (20 vs. 23 °C) and decreased pH (8.0 vs. 7.7) for six weeks. We used amplicon sequencing of the 16S rRNA gene to characterize the alpha and beta diversity of microbial communities on the mussel shell. The functioning of microbial biofilms was assessed by measuring aerobic respiration and nitrogen emission rates. We did not report any significant impacts of climate change treatments on the diversity of mussel microbiomes nor on the structure of these communities. Lowered pH and increased temperature had antagonistic effects on the functioning of microbial communities with decreased aerobic respiration and N2O emission rates of microbial biofilms in acidified seawater compared to increased rates in warmer conditions. An overriding impact of acidification over warming was finally observed on N2O emissions when the two factors were combined. Although acidification and warming in combination significantly reduced N2O biofilm emissions, the promotion of aquaculture activities in coastal waters where shellfish do not normally occur at high biomass and density could nonetheless result in unwanted emissions of this greenhouse gas in a near future.
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Affiliation(s)
- Annabelle Dairain
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, Adaptation et Diversité en Milieu Marin, Place Georges Teissier, CS90074, 29688 Roscoff Cedex, France.
| | - Helena Voet
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Royal Belgian Institute of Natural Sciences, Operational Directorate Natural Environment, Marine Ecology and Management, Vautierstraat 29, Brussels 1000, Belgium
| | - Anna-Maria Vafeiadou
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Nele De Meester
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Annelien Rigaux
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Carl Van Colen
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Jan Vanaverbeke
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Royal Belgian Institute of Natural Sciences, Operational Directorate Natural Environment, Marine Ecology and Management, Vautierstraat 29, Brussels 1000, Belgium
| | - Tom Moens
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
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Barbosa AB, Mosley BA, Galvão HM, Domingues RB. Short-Term Effects of Climate Change on Planktonic Heterotrophic Prokaryotes in a Temperate Coastal Lagoon: Temperature Is Good, Ultraviolet Radiation Is Bad, and CO 2 Is Neutral. Microorganisms 2023; 11:2559. [PMID: 37894217 PMCID: PMC10609585 DOI: 10.3390/microorganisms11102559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/05/2023] [Accepted: 10/12/2023] [Indexed: 10/29/2023] Open
Abstract
Planktonic heterotrophic prokaryotes (HProks) are a pivotal functional group in marine ecosystems and are highly sensitive to environmental variability and climate change. This study aimed to investigate the short-term effects of increasing carbon dioxide (CO2), ultraviolet radiation (UVR), and temperature on natural assemblages of HProks in the Ria Formosa coastal lagoon during winter. Two multi-stressor microcosm experiments were used to evaluate the isolated and combined effects of these environmental changes on HProk abundance, production, growth, and mortality rates. The isolated and combined effects of increased CO2 on HProks were not significant. However, HProk production, cellular activity, instantaneous growth rate, and mortality rate were negatively influenced by elevated UVR and positively influenced by warming. Stronger effects were detected on HProk mortality in relation to specific growth rate, leading to higher HProk net growth rates and abundance under elevated UVR and lower values under warming conditions.
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Affiliation(s)
| | | | | | - Rita B. Domingues
- CIMA—Centre for Marine and Environmental Research & ARNET—Infrastructure Network in Aquatic Research, Campus de Gambelas, University of Algarve, 8005-139 Faro, Portugal
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3
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Fridolfsson E, Bunse C, Lindehoff E, Farnelid H, Pontiller B, Bergström K, Pinhassi J, Legrand C, Hylander S. Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper. Sci Rep 2023; 13:11865. [PMID: 37481661 PMCID: PMC10363133 DOI: 10.1038/s41598-023-38816-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Accepted: 07/15/2023] [Indexed: 07/24/2023] Open
Abstract
The planktonic realm from bacteria to zooplankton provides the baseline for pelagic aquatic food webs. However, multiple trophic levels are seldomly included in time series studies, hampering a holistic understanding of the influence of seasonal dynamics and species interactions on food web structure and biogeochemical cycles. Here, we investigated plankton community composition, focusing on bacterio-, phyto- and large mesozooplankton, and how biotic and abiotic factors correlate at the Linnaeus Microbial Observatory (LMO) station in the Baltic Sea from 2011 to 2018. Plankton communities structures showed pronounced dynamic shifts with recurring patterns. Summarizing the parts of the planktonic microbial food web studied here to total carbon, a picture emerges with phytoplankton consistently contributing > 39% while bacterio- and large mesozooplankton contributed ~ 30% and ~ 7%, respectively, during summer. Cyanophyceae, Actinobacteria, Bacteroidetes, and Proteobacteria were important groups among the prokaryotes. Importantly, Dinophyceae, and not Bacillariophyceae, dominated the autotrophic spring bloom whereas Litostomatea (ciliates) and Appendicularia contributed significantly to the consumer entities together with the more traditionally observed mesozooplankton, Copepoda and Cladocera. Our findings of seasonality in both plankton composition and carbon stocks emphasize the importance of time series analyses of food web structure for characterizing the regulation of biogeochemical cycles and appropriately constraining ecosystem models.
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Affiliation(s)
- Emil Fridolfsson
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
| | - Carina Bunse
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
- Department of Marine Sciences, University of Gothenburg, 40530, Gothenburg, Sweden
| | - Elin Lindehoff
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
| | - Hanna Farnelid
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
| | - Benjamin Pontiller
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
- GEOMAR Helmholtz Centre for Ocean Research Kiel, E24105, Kiel, Germany
| | - Kristofer Bergström
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden
| | - Jarone Pinhassi
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden.
| | - Catherine Legrand
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden.
- School of Business, Innovation and Sustainability, Halmstad University, 30118, Halmstad, Sweden.
| | - Samuel Hylander
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, 39182, Kalmar, Sweden.
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4
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Seidel L, Broman E, Nilsson E, Ståhle M, Ketzer M, Pérez-Martínez C, Turner S, Hylander S, Pinhassi J, Forsman A, Dopson M. Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities. THE ISME JOURNAL 2023; 17:855-869. [PMID: 36977742 DOI: 10.1038/s41396-023-01395-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 03/01/2023] [Accepted: 03/10/2023] [Indexed: 03/30/2023]
Abstract
Besides long-term average temperature increases, climate change is projected to result in a higher frequency of marine heatwaves. Coastal zones are some of the most productive and vulnerable ecosystems, with many stretches already under anthropogenic pressure. Microorganisms in coastal areas are central to marine energy and nutrient cycling and therefore, it is important to understand how climate change will alter these ecosystems. Using a long-term heated bay (warmed for 50 years) in comparison with an unaffected adjacent control bay and an experimental short-term thermal (9 days at 6-35 °C) incubation experiment, this study provides new insights into how coastal benthic water and surface sediment bacterial communities respond to temperature change. Benthic bacterial communities in the two bays reacted differently to temperature increases with productivity in the heated bay having a broader thermal tolerance compared with that in the control bay. Furthermore, the transcriptional analysis showed that the heated bay benthic bacteria had higher transcript numbers related to energy metabolism and stress compared to the control bay, while short-term elevated temperatures in the control bay incubation experiment induced a transcript response resembling that observed in the heated bay field conditions. In contrast, a reciprocal response was not observed for the heated bay community RNA transcripts exposed to lower temperatures indicating a potential tipping point in community response may have been reached. In summary, long-term warming modulates the performance, productivity, and resilience of bacterial communities in response to warming.
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Affiliation(s)
- Laura Seidel
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden.
| | - Elias Broman
- Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
- Baltic Sea Centre, Stockholm University, Stockholm, Sweden
| | - Emelie Nilsson
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Magnus Ståhle
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Marcelo Ketzer
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Clara Pérez-Martínez
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Stephanie Turner
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Samuel Hylander
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Jarone Pinhassi
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Anders Forsman
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Mark Dopson
- Centre for ecology and evolution in microbial model systems (EEMiS), Linnaeus University, Kalmar, Sweden
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5
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Verma A, Amnebrink D, Pinhassi J, Wikner J. Prokaryotic maintenance respiration and growth efficiency field patterns reproduced by temperature and nutrient control at mesocosm scale. Environ Microbiol 2023; 25:721-737. [PMID: 36511634 DOI: 10.1111/1462-2920.16300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 12/05/2022] [Indexed: 12/14/2022]
Abstract
The distribution of prokaryotic metabolism between maintenance and growth activities has a profound impact on the transformation of carbon substrates to either biomass or CO2 . Knowledge of key factors influencing prokaryotic maintenance respiration is, however, highly limited. This mesocosm study validated the significance of prokaryotic maintenance respiration by mimicking temperature and nutrients within levels representative of winter and summer conditions. A global range of growth efficiencies (0.05-0.57) and specific growth rates (0.06-2.7 d-1 ) were obtained. The field pattern of cell-specific respiration versus specific growth rate and the global relationship between growth efficiency and growth rate were reproduced. Maintenance respiration accounted for 75% and 15% of prokaryotic respiration corresponding to winter and summer conditions, respectively. Temperature and nutrients showed independent positive effects for all prokaryotic variables except abundance and cell-specific respiration. All treatments resulted in different taxonomic diversity, with specific populations of amplicon sequence variants associated with either maintenance or growth conditions. These results validate a significant relationship between specific growth and respiration rate under productive conditions and show that elevated prokaryotic maintenance respiration can occur under cold and oligotrophic conditions. The experimental design provides a tool for further study of prokaryotic energy metabolism under realistic conditions at the mesocosm scale.
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Affiliation(s)
- Ashish Verma
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
- Umeå Marine Sciences Centre, Hörnefors, Sweden
| | - Dennis Amnebrink
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, Kalmar, Sweden
| | - Jarone Pinhassi
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University, Kalmar, Sweden
| | - Johan Wikner
- Department of Ecology and Environmental Science, Umeå University, Umeå, Sweden
- Umeå Marine Sciences Centre, Hörnefors, Sweden
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6
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Responses of Free-Living Planktonic Bacterial Communities to Experimental Acidification and Warming. Microorganisms 2023; 11:microorganisms11020273. [PMID: 36838238 PMCID: PMC9963540 DOI: 10.3390/microorganisms11020273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 01/03/2023] [Accepted: 01/17/2023] [Indexed: 01/22/2023] Open
Abstract
Climate change driven by human activities encompasses the increase in atmospheric CO2 concentration and sea-surface temperature. Little is known regarding the synergistic effects of these phenomena on bacterial communities in oligotrophic marine ecosystems that are expected to be particularly vulnerable. Here, we studied bacterial community composition changes based on 16S rRNA sequencing at two fractions (0.1-0.2 and >0.2 μm) during a 10- day fully factorial mesocosm experiment in the eastern Mediterranean where the pH decreased by ~0.3 units and temperature increased by ~3 °C to project possible future changes in surface waters. The bacterial community experienced significant taxonomic differences driven by the combined effect of time and treatment; a community shift one day after the manipulations was noticed, followed by a similar state between all mesocosms at the third day, and mild shifts later on, which were remarkable mainly under sole acidification. The abundance of Synechococcus increased in response to warming, while the SAR11 clade immediately benefited from the combined acidification and warming. The effect of the acidification itself had a more persistent impact on community composition. This study highlights the importance of studying climate change consequences on ecosystem functioning both separately and simultaneously, considering the ambient environmental parameters.
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7
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Kim HH, Laufkötter C, Lovato T, Doney SC, Ducklow HW. Projected 21st-century changes in marine heterotrophic bacteria under climate change. Front Microbiol 2023; 14:1049579. [PMID: 36876093 PMCID: PMC9978487 DOI: 10.3389/fmicb.2023.1049579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Accepted: 01/19/2023] [Indexed: 02/18/2023] Open
Abstract
Marine heterotrophic Bacteria (or referred to as bacteria) play an important role in the ocean carbon cycle by utilizing, respiring, and remineralizing organic matter exported from the surface to deep ocean. Here, we investigate the responses of bacteria to climate change using a three-dimensional coupled ocean biogeochemical model with explicit bacterial dynamics as part of the Coupled Model Intercomparison Project Phase 6. First, we assess the credibility of the century-scale projections (2015-2099) of bacterial carbon stock and rates in the upper 100 m layer using skill scores and compilations of the measurements for the contemporary period (1988-2011). Second, we demonstrate that across different climate scenarios, the simulated bacterial biomass trends (2076-2099) are sensitive to the regional trends in temperature and organic carbon stocks. Bacterial carbon biomass declines by 5-10% globally, while it increases by 3-5% in the Southern Ocean where semi-labile dissolved organic carbon (DOC) stocks are relatively low and particle-attached bacteria dominate. While a full analysis of drivers underpinning the simulated changes in all bacterial stock and rates is not possible due to data constraints, we investigate the mechanisms of the changes in DOC uptake rates of free-living bacteria using the first-order Taylor decomposition. The results demonstrate that the increase in semi-labile DOC stocks drives the increase in DOC uptake rates in the Southern Ocean, while the increase in temperature drives the increase in DOC uptake rates in the northern high and low latitudes. Our study provides a systematic analysis of bacteria at global scale and a critical step toward a better understanding of how bacteria affect the functioning of the biological carbon pump and partitioning of organic carbon pools between surface and deep layers.
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Affiliation(s)
- Heather H Kim
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA, United States
| | - Charlotte Laufkötter
- Division of Climate and Environmental Physics, Physics Institute, University of Bern, Bern, Switzerland.,Oeschger Centre for Climate Change Research, University of Bern, Bern, Switzerland
| | - Tomas Lovato
- Ocean Modeling and Data Assimilation Division, Fondazione Centro Euro-Mediterraneo sui Cambiamenti Climatici - CMCC, Bologna, Italy
| | - Scott C Doney
- Department of Environmental Sciences, University of Virginia, Charlottesville, VA, United States
| | - Hugh W Ducklow
- Department of Earth and Environmental Sciences, Columbia University, New York, NY, United States
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Heterogeneous selection dominated the temporal variation of the planktonic prokaryotic community during different seasons in the coastal waters of Bohai Bay. Sci Rep 2022; 12:20475. [PMID: 36443487 PMCID: PMC9705714 DOI: 10.1038/s41598-022-24892-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 11/22/2022] [Indexed: 11/29/2022] Open
Abstract
To explore temporal and spatial effects on the planktonic prokaryotic community composition (PCC) in the coastal region of the Bohai Sea, surface water samples were collected from 12 to 28 regularly distributed sites in Bohai Bay across 3 months from different seasons to characterize the PCC using high-throughput sequencing of the 16S rRNA V4 region. Prokaryotic α- and β-diversity showed significant temporal variation during the three sampling months. VPA analysis based on both weighted and unweighted UniFrac distances exhibited a shift of environmental and spatial effects on PCC variation with temporal variation. Quantification analysis of assembly processes on community turn over showed that "heterogeneous selection" dominated for PCC temporal variation, with basic abiotic parameters such as temperature, pH, ammonia nitrogen as the driving factors. Analysis of seasonal features showed that seasonal specific OTUs (ssOTUs) exhibited different seasonal attributions under the same phylum; meanwhile, the ssOTUs showed significant correlations with the driving environmental factors, which suggested that finer-level analysis was needed to more strictly reflect the temporal variation. Moreover, predicted nitrogen and sulfur metabolism were significantly shifted during the temporal variation. Our results clearly showed that seasonally varied environmental factors drive the "heterogeneous selection" process for PCC assembly in seawaters of Bohai Bay during different sampling seasons.
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Shao Q, Sun D, Fang C, Feng Y, Wang C. Biodiversity and Biogeography of Abundant and Rare Microbial Assemblages in the Western Subtropical Pacific Ocean. Front Microbiol 2022; 13:839562. [PMID: 35432250 PMCID: PMC9006148 DOI: 10.3389/fmicb.2022.839562] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Accepted: 03/07/2022] [Indexed: 11/13/2022] Open
Abstract
The levels of chlorophyll a and nutrient concentrations in the surface waters of the western subtropical Pacific Ocean are among the lowest globally. In addition, our knowledge of basin-scale diversity and biogeography of microbial communities in this vast extremely oligotrophic environment is still rather limited. Here, high-throughput sequencing was used to examine the biodiversity and biogeography of abundant and rare microbial assemblages throughout the water column from the surface to a depth of 3,000 m across a horizontal distance of 1,100 km in the western Pacific Ocean. Microbial alpha diversity in the 200-m layer was higher than at other depths, with Gammaproteobacteria, Alphaproteobacteria, and Clostridia as the dominant classes in all samples. Distinctly vertical distributions within the microbial communities were revealed, with no difference horizontally. Some microbes exhibited depth stratification. For example, the relative abundances of Cyanobacteria and Alphaproteobacteria decreased with depth, while Nitrososphaeria, Actinobacteria, and Gammaproteobacteria increased with depth in the aphotic layers. Furthermore, we found that environmental (selective process) and spatial (neutral process) factors had different effects on abundant and rare taxa. Geographical distance showed little effect on the dispersal of all and abundant taxa, while statistically significant distance-decay relationships were observed among the rare taxa. Temperature and chlorophyll a were strongly associated with all, abundant, and rare taxa in the photic layers, while total inorganic nitrogen was recognized as the crucial factor in the aphotic layers. Variance partitioning analysis indicated that environmental selection played a relatively important role in shaping all and abundant taxa, while the variation in rare taxa explained by environmental and spatial processes was relatively low, as more than 70% of the variation remained unexplained. This study provides novel knowledge related to microbial community diversity in the western subtropical Pacific Ocean, and the analyzes biogeographical patterns among abundant and rare taxa.
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Affiliation(s)
- Qianwen Shao
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
- Ningbo Institute of Oceanography, Ningbo, China
| | - Dong Sun
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
| | - Chen Fang
- College of Oceanography, Hohai University, Nanjing, China
| | - Yunzhi Feng
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, China
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou, China
- School of Oceanography, Shanghai Jiao Tong University, Shanghai, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China
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10
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Marine viruses and climate change: Virioplankton, the carbon cycle, and our future ocean. Adv Virus Res 2022. [DOI: 10.1016/bs.aivir.2022.09.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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11
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Wang D, Zheng Q, Lv Q, Cai Y, Zheng Y, Chen H, Zhang W. Analysis of Community Composition of Bacterioplankton in Changle Seawater in China by Illumina Sequencing Combined with Bacteria Culture. Orthop Surg 2021; 14:139-148. [PMID: 34816606 PMCID: PMC8755877 DOI: 10.1111/os.13060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 04/09/2021] [Accepted: 05/06/2021] [Indexed: 11/27/2022] Open
Abstract
OBJECTIVES To characterize the abundance and relative composition of seawater bacterioplankton communities in Changle city using Illumina MiSeq sequencing and bacterial culture techniques. METHODS Seawater samples and physicochemical factors were collected from the coastal zone of Changle city on 8 September 2019. Nineteen filter membranes were obtained after using a suction filtration system. We randomly selected eight samples for total seawater bacteria (SWDNA group) sequencing and three samples for active seawater bacteria (SWRNA group) sequencing by Illumina MiSeq. The remaining eight samples were used for bacterial culture and identification. Alpha diversity including species coverage (Coverage), species diversity (Shannon-Wiener and Simpson index), richness estimators (Chao1), and abundance-based richness estimation (ACE) were calculated to assess biodiversity of seawater bacterioplankton. Beta diversity was used to evaluate the differences between samples. The species abundance differences were determined using the Wilcoxon rank-sum test. Statistical analyses were performed in R environment. RESULTS The Alpha diversity in the SWDNA group in each index was ACE 3206.99, Chao1 2615.12, Shannon 4.64, Simpson 0.05, and coverage 0.97; the corresponding index was ACE 1199.55, Chao1 934.75, Shannon 3.49, Simpson 0.09, and coverage 0.99. The sequencing results of seawater bacterial genes in the coastal waters of Changle city showed that the phyla of high-abundance bacteria of both the SWDNA and SWRNA groups included Cyanobacteria, Proteobacteria, and Bacteroidetes. The main classes included Oxyphotobacteria, Alphaproteobacteria, and Gammaproteobacteria. The main genera included Synechococcus CC9902, Chloroplast, and Cyanobium_PCC-6307. Beta diversity analysis showed a significant difference between the SWDNA and SWRNA groups (P < 0.05). The species abundance differences between SWDNA and SWRNA groups after Wilcoxon rank-sum test showed that, at the phylum level, Actinomycetes was more abundant in SWDNA group (9.17 vs 1.02%, P < 0.05); at the class level, Actinomycetes (δ- Proteus) was more abundant in SWDNA group (9.47% vs 1.01%, P < 0.05); and at the genus level, Chloroplast was more abundant in SWRNA group (13.07% vs 44.57%, P < 0.05). Nine species and 53 colonies were found by bacterial culture: 20 strains of Vibrio (37.74%), 22 strains of Enterobacter (41.51%), and 11 strains of non-fermentative bacteria (20.75%). CONCLUSION Illumi MiSeq sequencing of seawater bacteria revealed that the total bacterial community groups and the active bacterial community groups mainly comprised Cyanobacteria, Proteobacteria, and Bacteroides at the phylum level; Oxyphotobacteria, α-Proteobacteria, and γ-Proteobacteria at the class level; with Synechococcus_CC9902, Chloroplast, and Cyanobium_PCC-6307 comprising the predominant genera. Exploring the composition and differences of seawater bacteria assists understanding regarding the biodiversity and the infections related to seawater bacteria along the coast of the Changle, provides information that will aid in the diagnosis and treatment of such infections.
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Affiliation(s)
- Du Wang
- Department of Joint Surgery, the First Affiliated Hospital of Fujian Medical University, Fuzhou, China
| | - Qingcong Zheng
- Department of Orthopedics, 900th Hospital of Joint Logistics Support Force, Fuzhou, China
| | - Qi Lv
- Department of Orthopedics, 900th Hospital of Joint Logistics Support Force, Fuzhou, China
| | - Yuanqing Cai
- Department of Joint Surgery, the First Affiliated Hospital of Fujian Medical University, Fuzhou, China
| | - Yun Zheng
- Department of Orthopedics, 900th Hospital of Joint Logistics Support Force, Fuzhou, China
| | - Huidong Chen
- Department of Orthopedics, 900th Hospital of Joint Logistics Support Force, Fuzhou, China
| | - Wenming Zhang
- Department of Joint Surgery, the First Affiliated Hospital of Fujian Medical University, Fuzhou, China
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12
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Mandal A, Dutta A, Das R, Mukherjee J. Role of intertidal microbial communities in carbon dioxide sequestration and pollutant removal: A review. MARINE POLLUTION BULLETIN 2021; 170:112626. [PMID: 34153859 DOI: 10.1016/j.marpolbul.2021.112626] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 06/06/2021] [Accepted: 06/08/2021] [Indexed: 05/16/2023]
Abstract
Intertidal microbial communities occur as biofilms or microphytobenthos (MPB) which are sediment-attached assemblages of bacteria, protozoa, fungi, algae, diatoms embedded in extracellular polymeric substances. Despite their global occurrence, they have not been reviewed in light of their structural and functional characteristics. This paper reviews the importance of such microbial communities and their importance in carbon dioxide sequestration as well as pollutant bioremediation. Global annual benthic microalgal productivity was 500 million tons of carbon, 50% of which contributed towards the autochthonous carbon fixation in the estuaries. Primary production by MPB was 27-234 gCm-2y-1 in the estuaries of Asia, Europe and the United States. Mechanisms of heavy metal removal remain to be tested in intertidal communities. Cyanobacteria facilitate hydrocarbon degradation in intertidal biofilms and microbial mats by supporting the associated sulfate-reducing bacteria and aerobic heterotrophs. Physiological cooperation between the microorganisms in intertidal communities imparts enhanced ability to utilize polycyclic aromatic hydrocarbon pollutants by these microorganisms than mono-species communities. Future research may be focused on biochemical characteristics of intertidal mats and biofilms, pollutant-microbial interactions and ecosystem influences.
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Affiliation(s)
- Abhishek Mandal
- School of Environmental Studies, Jadavpur University, 700032, India
| | - Ahana Dutta
- School of Environmental Studies, Jadavpur University, 700032, India
| | - Reshmi Das
- School of Environmental Studies, Jadavpur University, 700032, India.
| | - Joydeep Mukherjee
- School of Environmental Studies, Jadavpur University, 700032, India.
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13
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Rajeev M, Sushmitha TJ, Aravindraja C, Toleti SR, Pandian SK. Thermal discharge-induced seawater warming alters richness, community composition and interactions of bacterioplankton assemblages in a coastal ecosystem. Sci Rep 2021; 11:17341. [PMID: 34462511 PMCID: PMC8405676 DOI: 10.1038/s41598-021-96969-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 08/10/2021] [Indexed: 02/01/2023] Open
Abstract
Despite accumulating evidence on the impact of global climate warming on marine microbes, how increasing seawater temperature influences the marine bacterioplankton communities is elusive. As temperature gradient created by thermal discharges provides a suitable in situ model to study the influence of warming on marine microorganisms, surface seawater were sampled consecutively for one year (September-2016 to August-2017) from the control (unimpacted) and thermal discharge-impacted areas of a coastal power plant, located in India. The bacterioplankton community differences between control (n = 16) and thermal discharge-impacted (n = 26) areas, as investigated using 16S rRNA gene tag sequencing revealed reduced richness and varied community composition at thermal discharge-impacted areas. The relative proportion of Proteobacteria was found to be higher (average ~ 15%) while, Bacteroidetes was lower (average ~ 10%) at thermal discharge-impacted areas. Intriguingly, thermal discharge-impacted areas were overrepresented by several potential pathogenic bacterial genera (e.g. Pseudomonas, Acinetobacter, Sulfitobacter, Vibrio) and other native marine genera (e.g. Marinobacter, Pseudoalteromonas, Alteromonas, Pseudidiomarina, Halomonas). Further, co-occurrence networks demonstrated that complexity and connectivity of networks were altered in warming condition. Altogether, results indicated that increasing temperature has a profound impact on marine bacterioplankton richness, community composition, and inter-species interactions. Our findings are immensely important in forecasting the consequences of future climate changes especially, ocean warming on marine microbiota.
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Affiliation(s)
- Meora Rajeev
- Department of Biotechnology, Alagappa University, Science Campus, Karaikudi, 630 003, Tamil Nadu, India
| | - T J Sushmitha
- Department of Biotechnology, Alagappa University, Science Campus, Karaikudi, 630 003, Tamil Nadu, India
| | | | - Subba Rao Toleti
- Water and Steam Chemistry Division, Bhabha Atomic Research Centre Facilities, Kalpakkam, 603 102, Tamil Nadu, India
| | - Shunmugiah Karutha Pandian
- Department of Biotechnology, Alagappa University, Science Campus, Karaikudi, 630 003, Tamil Nadu, India.
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14
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Malits A, Boras JA, Balagué V, Calvo E, Gasol JM, Marrasé C, Pelejero C, Pinhassi J, Sala MM, Vaqué D. Viral-Mediated Microbe Mortality Modulated by Ocean Acidification and Eutrophication: Consequences for the Carbon Fluxes Through the Microbial Food Web. Front Microbiol 2021; 12:635821. [PMID: 33935996 PMCID: PMC8079731 DOI: 10.3389/fmicb.2021.635821] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 02/22/2021] [Indexed: 11/13/2022] Open
Abstract
Anthropogenic carbon emissions are causing changes in seawater carbonate chemistry including a decline in the pH of the oceans. While its aftermath for calcifying microbes has been widely studied, the effect of ocean acidification (OA) on marine viruses and their microbial hosts is controversial, and even more in combination with another anthropogenic stressor, i.e., human-induced nutrient loads. In this study, two mesocosm acidification experiments with Mediterranean waters from different seasons revealed distinct effects of OA on viruses and viral-mediated prokaryotic mortality depending on the trophic state and the successional stage of the plankton community. In the winter bloom situation, low fluorescence viruses, the most abundant virus-like particle (VLP) subpopulation comprising mostly bacteriophages, were negatively affected by lowered pH with nutrient addition, while the bacterial host abundance was stimulated. High fluorescence viruses, containing cyanophages, were stimulated by OA regardless of the nutrient conditions, while cyanobacteria of the genus Synechococcus were negatively affected by OA. Moreover, the abundance of very high fluorescence viruses infecting small haptophytes tended to be lower under acidification while their putative hosts' abundance was enhanced, suggesting a direct and negative effect of OA on viral-host interactions. In the oligotrophic summer situation, we found a stimulating effect of OA on total viral abundance and the viral populations, suggesting a cascading effect of the elevated pCO2 stimulating autotrophic and heterotrophic production. In winter, viral lysis accounted for 30 ± 16% of the loss of bacterial standing stock per day (VMMBSS) under increased pCO2 compared to 53 ± 35% in the control treatments, without effects of nutrient additions while in summer, OA had no significant effects on VMMBSS (35 ± 20% and 38 ± 5% per day in the OA and control treatments, respectively). We found that phage production and resulting organic carbon release rates significantly reduced under OA in the nutrient replete winter situation, but it was also observed that high nutrient loads lowered the negative effect of OA on viral lysis, suggesting an antagonistic interplay between these two major global ocean stressors in the Anthropocene. In summer, however, viral-mediated carbon release rates were lower and not affected by lowered pH. Eutrophication consistently stimulated viral production regardless of the season or initial conditions. Given the relevant role of viruses for marine carbon cycling and the biological carbon pump, these two anthropogenic stressors may modulate carbon fluxes through their effect on viruses at the base of the pelagic food web in a future global change scenario.
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Affiliation(s)
- Andrea Malits
- Biological Oceanography Laboratory, Austral Center for Scientific Research (CONICET), Ushuaia, Argentina
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Julia A. Boras
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Vanessa Balagué
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Eva Calvo
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Josep M. Gasol
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
- Center for Marine Ecosystems Research, School of Sciences, Edith Cowan University, Joondalup, WA, Australia
| | - Cèlia Marrasé
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Carles Pelejero
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain
| | - Jarone Pinhassi
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus University, Kalmar, Sweden
| | - Maria Montserrat Sala
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Dolors Vaqué
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (CSIC), Barcelona, Spain
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15
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Lamim VB, Procópio L. Influence of Acidification and Warming of Seawater on Biofouling by Bacteria Grown over API 5L Steel. Indian J Microbiol 2021; 61:151-159. [PMID: 33927456 DOI: 10.1007/s12088-021-00925-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 02/08/2021] [Indexed: 12/20/2022] Open
Abstract
The acidification and warming of seawater have several impacts on marine organisms, including over microorganisms. The influence of acidification and warming of seawater on biofilms grown on API 5L steel surfaces was evaluated by sequencing the 16S ribosomal gene. For this, three microcosms were designed, the first simulating the natural marine environment (MCC), the second with a decrease in pH from 8.1 to 7.9, and an increase in temperature by 2 °C (MMS), and the third with pH in around 7.7 and an increase in temperature of 4 °C (MES). The results showed that MCC was dominated by the Gammaproteobacteria class, mainly members of the Alteromonadales Order. The second most abundant group was Alphaproteobacteria, with a predominance of Rhodobacterales and Oceanospirillales. In the MMS system there was a balance between representatives of the Gammaproteobacteria and Alphaproteobacteria classes. In MES there was an inversion in the representations of the most prevalent classes previously described in MCC. In this condition, there was a predominance of members of the Alphaproteobacteria Class, in contrast to the decrease in the abundance of Gammaproteobacteria members. These results suggest that possible future climate changes may influence the dynamics of the biofouling process in surface metals. Supplementary Information The online version contains supplementary material available at 10.1007/s12088-021-00925-7.
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Affiliation(s)
- Victória Brigido Lamim
- Microbial Corrosion Laboratory, Estácio University (UNESA), Bispo Street, 83, Room, AG405, Rio de Janeiro, Rio de Janeiro 20261-063 Brazil
| | - Luciano Procópio
- Microbial Corrosion Laboratory, Estácio University (UNESA), Bispo Street, 83, Room, AG405, Rio de Janeiro, Rio de Janeiro 20261-063 Brazil
- Industrial Microbiology and Bioremediation Department, Federal University of Rio de Janeiro (UFRJ), Estrada de Xerém, 27, Duque de Caxias, Rio de Janeiro Brazil
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16
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Thangaraj S, Palanisamy SK, Zhang G, Sun J. Quantitative Proteomic Profiling of Marine Diatom Skeletonema dohrnii in Response to Temperature and Silicate Induced Environmental Stress. Front Microbiol 2021; 11:554832. [PMID: 33519723 PMCID: PMC7841394 DOI: 10.3389/fmicb.2020.554832] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 12/23/2020] [Indexed: 11/17/2022] Open
Abstract
Global warming is expected to reduce the nutrient concentration in the upper ocean and affect the physiology of marine diatoms, but the underlying molecular mechanisms controlling these physiological changes are currently unknown. To understand these mechanisms, here we investigated iTRAQ based proteomic profiling of diatom Skeletonema dohrnii in a multifactorial experimental with a combining change of temperature and silicate concentrations. In total, 3369 differently abundant proteins were detected in four different environmental conditions, and the function of all proteins was identified using Gene Ontology and KEGG pathway analysis. For discriminating the proteome variation among samples, multivariate statistical analysis (PCA, PLS-DA) was performed by comparing the protein ratio differences. Further, performing pathway analysis on diatom proteomes, we here demonstrated downregulation of photosynthesis, carbon metabolism, and ribosome biogenesis in the cellular process that leads to decrease the oxidoreductase activity and affects the cell cycle of the diatom. Using PLS-DA VIP score plot analysis, we identified 15 protein biomarkers for discriminating studied samples. Of these, five proteins or gene (rbcL, PRK, atpB, DNA-binding, and signal transduction) identified as key biomarkers, induced by temperature and silicate stress in diatom metabolism. Our results show that proteomic finger-printing of S. dohrnii with different environmental conditions adds biological information that strengthens marine phytoplankton proteome analysis.
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Affiliation(s)
| | - Satheesh Kumar Palanisamy
- Department of Zoology, School of Natural Science, Ryan Institute, National University of Ireland, Galway, Ireland
| | - Guicheng Zhang
- Research Center for Indian Ocean Ecosystem, Tianjin University of Science and Technology, Tianjin, China.,Tianjin Key Laboratory of Marine Resources and Chemistry, Tianjin University of Science and Technology, Tianjin, China
| | - Jun Sun
- College of Marine Science and Technology, China University of Geosciences, Wuhan, China
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17
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Sharma KV, Sarvalingam BK, Marigoudar SR. A review of mesocosm experiments on heavy metals in marine environment and related issues of emerging concerns. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:1304-1316. [PMID: 33079346 DOI: 10.1007/s11356-020-11121-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 10/04/2020] [Indexed: 06/11/2023]
Abstract
Mesocosms are real-world environmental science tools for bridging the gap between laboratory-scale experiments and actual habitat studies on ecosystem complexities. These experiments are increasingly being applied in understanding the complex impacts of heavy metals, ocean acidification, global warming, and oil spills. The insights of the present review indicate how metals and metal-bound activities impact on various aspects of ecological complexities like prey predator cues, growth, embryonic development, and reproduction. Plankton and benthos are used more often over fish and microbes owing to their smaller size, faster reproduction, amenability, and repeatability during mesocosm experiments. The results of ocean acidification reveal calcification of plankton, corals, alteration of pelagic structures, and plankton blooms. The subtle effect of oil spills is amplified on sediment microorganisms, primary producers, and crustaceans. An overview of the mesocosm designs over the years indicates that gradual changes have evolved in the type, size, design, composition, parameters, methodology employed, and the outputs obtained. Most of the pelagic and benthic mesocosm designs involve consideration of interactions within the water columns, between water and sediments, trophic levels, and nutrient rivalry. Mesocosm structures are built considering physical processes (tidal currents, turbulence, inner cycling of nutrients, thermal stratification, and mixing), biological complexities (population, community, and ecosystem) using appropriate filling containers, and sampling facilities that employ inert materials. The principle of design is easy transportation, mooring, deployment, and free floating structures besides addressing the unique ecosystem-based science problems. The evolution of the mesocosm tools helps in understanding further advancement of techniques and their applications in marine ecosystems.
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Affiliation(s)
- Krishna Venkatarama Sharma
- National Centre for Coastal Research, Ministry of Earth Sciences, Government of India, NIOT Campus, Pallikaranai, Chennai, 600 100, India
| | - Barath Kumar Sarvalingam
- National Centre for Coastal Research, Ministry of Earth Sciences, Government of India, NIOT Campus, Pallikaranai, Chennai, 600 100, India
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18
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Kerfahi D, Harvey BP, Agostini S, Kon K, Huang R, Adams JM, Hall-Spencer JM. Responses of Intertidal Bacterial Biofilm Communities to Increasing pCO 2. MARINE BIOTECHNOLOGY (NEW YORK, N.Y.) 2020; 22:727-738. [PMID: 32185542 DOI: 10.1007/s10126-020-09958-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2019] [Accepted: 02/21/2020] [Indexed: 06/10/2023]
Abstract
The effects of ocean acidification on ecosystems remain poorly understood, because it is difficult to simulate the effects of elevated CO2 on entire marine communities. Natural systems enriched in CO2 are being used to help understand the long-term effects of ocean acidification in situ. Here, we compared biofilm bacterial communities on intertidal cobbles/boulders and bedrock along a seawater CO2 gradient off Japan. Samples sequenced for 16S rRNA showed differences in bacterial communities with different pCO2 and between habitat types. In both habitats, bacterial diversity increased in the acidified conditions. Differences in pCO2 were associated with differences in the relative abundance of the dominant phyla. However, despite the differences in community composition, there was no indication that these changes would be significant for nutrient cycling and ecosystem function. As well as direct effects of seawater chemistry on the biofilm, increased microalgal growth and decreased grazing may contribute to the shift in bacterial composition at high CO2, as documented by other studies. Thus, the effects of changes in bacterial community composition due to globally increasing pCO2 levels require further investigation to assess the implications for marine ecosystem function. However, the apparent lack of functional shifts in biofilms along the pCO2 gradient is a reassuring indicator of stability of their ecosystem functions in shallow ocean margins.
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Affiliation(s)
- Dorsaf Kerfahi
- School of Natural Sciences, Department of Biological Sciences, Keimyung University, Daegu, 42601, Republic of Korea
| | - Ben P Harvey
- Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, Japan
| | - Sylvain Agostini
- Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, Japan
| | - Koetsu Kon
- Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, Japan
| | - Ruiping Huang
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361100, Fujian, China
| | - Jonathan M Adams
- School of Geographic and Oceanographic Sciences, Nanjing University, Nanjing, 210008, China.
| | - Jason M Hall-Spencer
- Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, Japan
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL4 8AA, UK
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19
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Crummett LT. Acidification decreases microbial community diversity in the Salish Sea, a region with naturally high pCO2. PLoS One 2020; 15:e0241183. [PMID: 33112901 PMCID: PMC7592811 DOI: 10.1371/journal.pone.0241183] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2019] [Accepted: 10/11/2020] [Indexed: 12/05/2022] Open
Abstract
Most literature exploring the biological effects of ocean acidification (OA) has focused on macroscopic organisms and far less is known about how marine microbial communities will respond. Studies of OA and microbial community composition and diversity have examined communities from a limited number of ocean regions where the ambient pH is near or above the global average. At San Juan Island (Salish Sea), a region that experiences naturally low pH (average = 7.8), the picoplankton (cell diameter is 0.2–2μm) community was predicted to show no response to experimental acidification in a three-week mesocosm experiment. Filtered seawater mesocosms were maintained via semicontinuous culturing. Three control mesocosms were maintained at pH 8.05 and three acidified mesocosms were maintained at pH 7.60. Total bacteria was quantified daily with a flow cytometer. Microbial communities were sampled every two days via filtration followed by DNA extraction, 16S rRNA amplification, and MiSeq sequencing. There was no significant difference in total bacteria between pH treatments throughout the experiment. Acidification significantly reduced Shannon’s diversity over time. During the final week of the experiment, acidification resulted in a significant decrease in Shannon’s diversity, Faith’s phylogenetic distance, and Pielous’s Evenness. ANCOM results revealed four bacterial ASVs (amplicon sequence variants), in families Flavobaceriaceae and Hyphomonadaceae that significantly decreased in relative frequency under acidification and two bacterial ASVs, in families Flavobacteriaceae and Alteromonadaceae, that significantly increased under acidification. This is the first OA study on the microbial community of the Salish Sea, a nutrient rich, low pH region, and the first of its kind to report a decrease in both picoplankton richness and evenness with acidification. These findings demonstrate that marine microbial communities that naturally experience acidic conditions are still sensitive to acidification.
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Affiliation(s)
- Lisa T. Crummett
- Life Sciences, Soka University of America, Aliso Viejo, California, United States of America
- * E-mail:
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20
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Gu B, Lee C, Ma X, Tan Y, Liu H, Xia X. Effect of Warming on Growth, Grazing, and Community Composition of Free-Living Bacterioplankton in Subtropical Coastal Waters During Winter and Summer. Front Microbiol 2020; 11:534404. [PMID: 33123098 PMCID: PMC7573218 DOI: 10.3389/fmicb.2020.534404] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 09/16/2020] [Indexed: 02/01/2023] Open
Abstract
Global warming is considered a major threat to marine ecosystems, which affects bacterioplankton activity, diversity, and community composition. However, few studies focus on the potential effects of warming on bacterioplankton in subtropical coastal waters in different seasons. Here we investigated the influences of warming on growth, grazing and community composition of bacterioplankton in Hong Kong coastal waters during winter and summer via 1-day incubation experiments. Our results revealed that without grazers, bacterioplankton displayed higher growth rate during summer compared to winter, while warming only significantly increased the growth rate of bacterioplankton in winter. Grazers with size <5 μm were major predators of bacterioplankton. Warming had little effect on grazing in summer but significantly enhanced grazing rates of >5 μm grazers in winter. In both seasons, warming had little influence on bacterial diversity and community composition. Nevertheless, in family and OTU levels, bacterioplankton had different responses to grazing and warming which may result from the selective grazing preference of predators and different temperature optima for bacterioplankton. Furthermore, the presence of >5 μm and <5 μm grazers would result in significant increase of some bacterial families under warming condition. Together, our results suggest that warming have direct impacts on bacterioplankton in subtropical coastal waters during winter and may thus affect global biogeochemical cycles.
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Affiliation(s)
- Bowei Gu
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China.,Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
| | - Candy Lee
- Department of Marine Science, The Hong Kong University of Science and Technology, Hong Kong, China
| | - Xiao Ma
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China.,Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
| | - Yehui Tan
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China.,Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
| | - Hongbin Liu
- Department of Marine Science, The Hong Kong University of Science and Technology, Hong Kong, China.,Hong Kong Branch of Southern Marine Science and Engineering Guangdong Laboratory, The Hong Kong University of Science and Technology, Hong Kong, China
| | - Xiaomin Xia
- Key Laboratory of Tropical Marine Bio-resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.,University of Chinese Academy of Sciences, Beijing, China.,Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
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21
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Seasonality in Spatial Turnover of Bacterioplankton Along an Ecological Gradient in the East China Sea: Biogeographic Patterns, Processes and Drivers. Microorganisms 2020; 8:microorganisms8101484. [PMID: 32992545 PMCID: PMC7600760 DOI: 10.3390/microorganisms8101484] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 09/18/2020] [Accepted: 09/18/2020] [Indexed: 11/16/2022] Open
Abstract
Seasonal succession in bacterioplankton is a common process in marine waters. However, seasonality in their spatial turnover is largely unknown. Here, we investigated spatial turnover of surface bacterioplankton along a nearshore-to-offshore gradient in the East China Sea across four seasons. Although seasonality overwhelmed spatial variability of bacterioplankton composition, we found significant spatial turnover of bacterioplankton along the gradient as well as overall seasonal consistency in biogeographic patterns (including distance-decay relationship and covariation of community composition with distance to shore) with subtle changes. Bacterioplankton assembly was consistently dominated by deterministic mechanisms across seasons, with changes in specific processes. We found overall seasonal consistency in abiotic factors (mainly salinity and nitrogen and phosphorus nutrients) shaping bacterioplankton composition, while phytoplankton showed a similar influence as abiotic factors only in spring. Although key taxa responsible for bacterioplankton spatial turnover showed certain season-specificity, seasonal switching between closely related taxa occurred within most dominant families. Moreover, many close relatives showed different responding patterns to the environmental gradients in different seasons, suggesting their differences in both seasonally climatic and spatially environmental preferences. Our results provide insights into seasonal consistency and variability in spatial turnover of bacterioplankton in terms of biogeographic patterns, ecological processes, and external and internal drivers.
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22
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Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. ISME JOURNAL 2020; 15:19-28. [PMID: 32887943 DOI: 10.1038/s41396-020-00748-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 07/31/2020] [Accepted: 08/12/2020] [Indexed: 11/08/2022]
Abstract
Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans.
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23
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Borrero-Santiago AR, Ribicic D, Bonnail E, Netzer R, Koseto D, Ardelan MV. Response of bacterial communities in Barents Sea sediments in case of a potential CO 2 leakage from carbon reservoirs. MARINE ENVIRONMENTAL RESEARCH 2020; 160:105050. [PMID: 32907742 DOI: 10.1016/j.marenvres.2020.105050] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Revised: 06/04/2020] [Accepted: 06/09/2020] [Indexed: 06/11/2023]
Abstract
Carbon capture and storage sites in Barents Sea shelf are currently in progress as part of climate change mitigation activities. However environmental impacts of a possible CO2 seepage on bacterial community are lacking knowledge. This work addressed potential consequences on bacterial communities from Snøvit region in Barents Sea sediments. Long-term experiment (92 days) was carried out mimicking realistic conditions of pressure (∼30 bars) using the unique hyperbaric chamber (Karl Erik TiTank). The experiment was divided in three stages: i) 21 days of no CO2, ii) 50 days of simulation of carbon dioxide leakage (depletion of pH to 7.0) and iii) 14 days emulating a leakage cessation. Results suggested that bacterial communities can adapt to a CO2 leakage in short term. However, bacteria showed negative effects in terms of activity, community structure, and number of cells after long term CO2 exposure. After CO2 leakage cessation, bacterial communities did not show a significant recovery. These findings highlighted that, even though marine bacteria showed adaptation to the new conditions (acidified environment), in case of a small but continuous CO2 leakage marine bacteria might not be recovered upon pre-exposure status.
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Affiliation(s)
- A R Borrero-Santiago
- Norwegian University of Science and Technology, Department of Chemistry, 7491, Trondheim, Norway.
| | - Deni Ribicic
- SINTEF Ocean, Department of Environment and New Resources, Brattørkaia 17c, 7010, Trondheim, Norway
| | - Estefania Bonnail
- Centro de Investigaciones Costeras-Universidad de Atacama (CIC-UDA), Avenida Copayapu 485, University of Atacama, Copiapó, Chile
| | - Roman Netzer
- SINTEF Ocean, Department of Environment and New Resources, Brattørkaia 17c, 7010, Trondheim, Norway
| | - Deni Koseto
- SINTEF Industry, Department of Biotechnology and Nanomedicine, P.O.Box 4760 Torgarden, 7465, Trondheim, Norway
| | - M V Ardelan
- Norwegian University of Science and Technology, Department of Chemistry, 7491, Trondheim, Norway
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24
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Allen R, Hoffmann LJ, Law CS, Summerfield TC. Subtle bacterioplankton community responses to elevated CO 2 and warming in the oligotrophic South Pacific gyre. ENVIRONMENTAL MICROBIOLOGY REPORTS 2020; 12:377-386. [PMID: 32307860 DOI: 10.1111/1758-2229.12844] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Revised: 04/11/2020] [Accepted: 04/12/2020] [Indexed: 06/11/2023]
Abstract
Bacterioplankton play a critical role in primary production, carbon cycling, and nutrient cycling in the oligotrophic ocean. To investigate the effect of elevated CO2 and warming on the composition and function of bacterioplankton communities in oligotrophic waters, we performed two trace-metal clean deck board incubation experiments during the New Zealand GEOTRACES transect of the South Pacific gyre (SPG). High-throughput amplicon sequencing of the 16S rRNA gene revealed that bacterioplankton community composition was distinct between the fringe and ultra-oligotrophic centre of the SPG and changed consistently in response to elevated CO2 at the ultra-oligotrophic centre but not at the mesotrophic fringe of the SPG. The combined effects of elevated CO2 and warming resulted in a high degree of heterogeneity between replicate communities. Community-level protein synthesis rates (3 H-Leucine incorporation) and bacterioplankton abundance were not affected by elevated CO2 alone or in combination with warming at the fringe or ultra-oligotrophic centre of the SPG. These data suggest bacterioplankton community responses to elevated CO2 may be modulated by nutrient regimes in open ocean ecosystems and highlight the need for further investigation in expanding oligotrophic subtropical gyres.
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Affiliation(s)
- Ro Allen
- Department of Botany, University of Otago, Dunedin, New Zealand
| | - Linn J Hoffmann
- Department of Botany, University of Otago, Dunedin, New Zealand
| | - Cliff S Law
- National Institute of Water and Atmospheric Research, Wellington, New Zealand
- Department of Chemistry, University of Otago, Dunedin, New Zealand
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25
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Mensch B, Neulinger SC, Künzel S, Wahl M, Schmitz RA. Warming, but Not Acidification, Restructures Epibacterial Communities of the Baltic Macroalga Fucus vesiculosus With Seasonal Variability. Front Microbiol 2020; 11:1471. [PMID: 32676070 PMCID: PMC7333354 DOI: 10.3389/fmicb.2020.01471] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 06/05/2020] [Indexed: 11/13/2022] Open
Abstract
Due to ocean acidification and global warming, surface seawater of the western Baltic Sea is expected to reach an average of ∼1100 μatm pCO2 and an increase of ∼5°C by the year 2100. In four consecutive experiments (spanning 10-11 weeks each) in all seasons within 1 year, the abiotic factors temperature (+5°C above in situ) and pCO2 (adjusted to ∼1100 μatm) were tested for their single and combined effects on epibacterial communities of the brown macroalga Fucus vesiculosus and on bacteria present in the surrounding seawater. The experiments were set up in three biological replicates using the Kiel Outdoor Benthocosm facility (Kiel, Germany). Phylogenetic analyses of the respective microbiota were performed by bacterial 16S (V1-V2) rDNA Illumina MiSeq amplicon sequencing after 0, 4, 8, and 10/11 weeks per season. The results demonstrate (I) that the bacterial community composition varied in time and (II) that relationships between operational taxonomic units (OTUs) within an OTU association network were mainly governed by the habitat. (III) Neither single pCO2 nor pCO2:Temperature interaction effects were statistically significant. However, significant impact of ocean warming was detected varying among seasons. (IV) An indicator OTU (iOTU) analysis identified several iOTUs that were strongly influenced by temperature in spring, summer, and winter. In the warming treatments of these three seasons, we observed decreasing numbers of bacteria that are commonly associated with a healthy marine microbial community and-particularly during spring and summer-an increase in potentially pathogenic and bacteria related to intensified microfouling. This might lead to severe consequences for the F. vesiculosus holobiont finally affecting the marine ecosystem.
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Affiliation(s)
- Birte Mensch
- Department of Biology, Institute of General Microbiology, Kiel University, Kiel, Germany
| | - Sven C. Neulinger
- Department of Biology, Institute of General Microbiology, Kiel University, Kiel, Germany
- omics2view.consulting GbR, Kiel, Germany
| | - Sven Künzel
- Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Biology, Plön, Germany
| | - Martin Wahl
- Marine Ecology Division, Research Unit Experimental Ecology, Benthic Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Ruth A. Schmitz
- Department of Biology, Institute of General Microbiology, Kiel University, Kiel, Germany
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26
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Hancock AM, King CK, Stark JS, McMinn A, Davidson AT. Effects of ocean acidification on Antarctic marine organisms: A meta-analysis. Ecol Evol 2020; 10:4495-4514. [PMID: 32489613 PMCID: PMC7246202 DOI: 10.1002/ece3.6205] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Revised: 12/27/2019] [Accepted: 01/16/2020] [Indexed: 12/20/2022] Open
Abstract
Southern Ocean waters are among the most vulnerable to ocean acidification. The projected increase in the CO2 level will cause changes in carbonate chemistry that are likely to be damaging to organisms inhabiting these waters. A meta-analysis was undertaken to examine the vulnerability of Antarctic marine biota occupying waters south of 60°S to ocean acidification. This meta-analysis showed that ocean acidification negatively affects autotrophic organisms, mainly phytoplankton, at CO2 levels above 1,000 μatm and invertebrates above 1,500 μatm, but positively affects bacterial abundance. The sensitivity of phytoplankton to ocean acidification was influenced by the experimental procedure used. Natural, mixed communities were more sensitive than single species in culture and showed a decline in chlorophyll a concentration, productivity, and photosynthetic health, as well as a shift in community composition at CO2 levels above 1,000 μatm. Invertebrates showed reduced fertilization rates and increased occurrence of larval abnormalities, as well as decreased calcification rates and increased shell dissolution with any increase in CO2 level above 1,500 μatm. Assessment of the vulnerability of fish and macroalgae to ocean acidification was limited by the number of studies available. Overall, this analysis indicates that many marine organisms in the Southern Ocean are likely to be susceptible to ocean acidification and thereby likely to change their contribution to ecosystem services in the future. Further studies are required to address the poor spatial coverage, lack of community or ecosystem-level studies, and the largely unknown potential for organisms to acclimate and/or adapt to the changing conditions.
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Affiliation(s)
- Alyce M. Hancock
- Institute for Marine and Antarctic StudiesUniversity of TasmaniaBattery PointTASAustralia
- Antarctic Gateway PartnershipBattery PointTASAustralia
- Antarctic Climate & Ecosystems Cooperative Research CentreBattery PointTASAustralia
| | | | | | - Andrew McMinn
- Institute for Marine and Antarctic StudiesUniversity of TasmaniaBattery PointTASAustralia
- Antarctic Gateway PartnershipBattery PointTASAustralia
- Antarctic Climate & Ecosystems Cooperative Research CentreBattery PointTASAustralia
| | - Andrew T. Davidson
- Antarctic Climate & Ecosystems Cooperative Research CentreBattery PointTASAustralia
- Australian Antarctic DivisionKingstonTASAustralia
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27
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Nelson KS, Baltar F, Lamare MD, Morales SE. Ocean acidification affects microbial community and invertebrate settlement on biofilms. Sci Rep 2020; 10:3274. [PMID: 32094391 PMCID: PMC7039980 DOI: 10.1038/s41598-020-60023-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 02/05/2020] [Indexed: 11/18/2022] Open
Abstract
Increased atmospheric CO2 is driving ocean acidification (OA), and potential changes in marine ecosystems. Research shows that both planktonic and benthic communities are affected, but how these changes are linked remains unresolved. Here we show experimentally that decreasing seawater pH (from pH 8.1 to 7.8 and 7.4) leads to reduced biofilm formation and lower primary producer biomass within biofilms. These changes occurred concurrently with a re-arrangement of the biofilm microbial communities. Changes suggest a potential shift from autotrophic to heterotrophic dominated biofilms in response to reduced pH. In a complimentary experiment, biofilms reared under reduced pH resulted in altered larval settlement for a model species (Galeolaria hystrix). These findings show that there is a potential cascade of impacts arising from OA effects on biofilms that may drive important community shifts through altered settlement patterns of benthic species.
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Affiliation(s)
- Katie S Nelson
- Department of Marine Science, University of Otago, PO Box 56, Dunedin, 9054, New Zealand
| | - Federico Baltar
- Department of Marine Science, University of Otago, PO Box 56, Dunedin, 9054, New Zealand.,NIWA/University of Otago Research Centre for Oceanography, PO Box 56, Dunedin, 9054, New Zealand.,Department of Functional and Evolutionary Ecology, University of Vienna, A-1090, Vienna, Austria
| | - Miles D Lamare
- Department of Marine Science, University of Otago, PO Box 56, Dunedin, 9054, New Zealand. .,NIWA/University of Otago Research Centre for Oceanography, PO Box 56, Dunedin, 9054, New Zealand.
| | - Sergio E Morales
- Department of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin, 9054, New Zealand.
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28
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Zhao W, Wang J, Xu S, Lei Y, Yang R, Shi L, Wang X, Huang Z. Bacterioplankton community variation in Bohai Bay (China) is explained by joint effects of environmental and spatial factors. Microbiologyopen 2020; 9:e997. [PMID: 32022464 PMCID: PMC7142376 DOI: 10.1002/mbo3.997] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Revised: 12/23/2019] [Accepted: 12/31/2019] [Indexed: 02/01/2023] Open
Abstract
Parsing the relative importance of environmental (recent disturbances) and spatial factors (historical processes) in determining community structure is a core issue in ecology. The Bohai Bay is a typical semi‐enclosed bay located in the north of China, surrounding by the metropolitan area with anthropogenic disturbances made it a complex marine coastal system with pollution gradients, where the distributions and determinants of bacterioplankton communities remain unclear. In this study, we collected surface water samples from 19 sites across Bohai Bay at about 100 km scale to investigate the relative roles of local environments and regional spatial factors in shaping bacterioplankton community composition (BCC). The environmental parameters in the sampling region showed gradient change according to the geographic variation. Several abundant OTUs were significantly correlated with the pollution parameters in the studied area, and 16 OTUs of them showed distinct distribution pattern in different polluted regions with obvious geographic segmentation, which indicated the effects of pollution gradient and dispersal limitation on specific taxon. The BCCs did not show obviously clustering effect between different polluted regions, which indicated the complexity for explaining the BCC variation in the studied region. The partial Mantel test revealed stronger spatial effects on beta diversity than those of local environmental factors, which indicated that dispersal limitation accounted more for the beta diversity than environmental heterogeneity. Furthermore, variation partitioning analysis (VPA) conducted by combining the environmental variables, linear trends, and principal coordinates of the variables from neighbor matrices (PCNM) showed that it was the joint effects of environmental and spatial factors contributed to the explained variation of BCC in the studied area. Considering the special human geography characteristics of Bohai Bay, the unmeasured biotic/abiotic factors, stochastic factors, and anthropogenic disturbances may be responsible for the unexplained variation of the BCC.
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Affiliation(s)
- Wei Zhao
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Jingjing Wang
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Song Xu
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Yu Lei
- Core Facility, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Rong Yang
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Liuyang Shi
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Xingbiao Wang
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
| | - Zhiyong Huang
- Tianjin Key Laboratory of Industrial Biological Systems and Process Engineering, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China
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29
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Actinobacteria from Extreme Niches in Morocco and Their Plant Growth-Promoting Potentials. DIVERSITY-BASEL 2019. [DOI: 10.3390/d11080139] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The objectives of this study were to assess actinobacterial diversity in five Moroccan extreme habitats and to evaluate their plant growth-promoting (PGP) activities. The soil samples were collected from different locations, including soils contaminated with heavy metals, from a high altitude site, from the desert, and from a marine environment. In total, 23 actinobacteria were isolated, 8 from Merzouga sand soil; 5 from Cannabis sativa rhizospheric soil; 5 from Toubkal mountain; 4 from a Draa sfar mining site; and 1 from marine soil. Based on their genotypic classification using 16S rRNA gene sequences, 19 of all belonged to the genus Streptomyces (82%) while the rest are the members of the genera Nocardioides (4.5%), Saccharomonospora (4.5%), Actinomadura (4.5%), and Prauserella (4.5%). Isolates Streptomyces sp. TNC-1 and Streptomyces sp. MNC-1 showed the highest level of phosphorus solubilization activity with 12.39 and 8.56 mg/mL, respectively. All 23 isolates were able to solubilize potassium, and 91% of them could grow under nitrogen-free conditions. The ability of the isolated actinobacteria to form indole-3-acetic acid (IAA) ranged from 6.70 to 75.54 μg/mL with Streptomyces sp. MNC-1 being the best IAA producer. In addition, all of the actinobacteria could produce siderophores, with Saccharomonospora sp. LNS-1 synthesizing the greatest amount (138.92 μg/mL). Principal coordinate analysis revealed that Streptomyces spp. MNC-1, MNT-1, MNB-2, and KNC-5; Saccharomonospora sp. LNS-1; and Nocardioides sp. KNC-3 each showed a variety of high-level plant growth-promoting activities. The extreme environments in Morocco are rich with bioactive actinobacteria that possess a variety of plant growth-promoting potentials that can further benefit green and sustainable agriculture.
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30
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Havenhand JN, Filipsson HL, Niiranen S, Troell M, Crépin AS, Jagers S, Langlet D, Matti S, Turner D, Winder M, de Wit P, Anderson LG. Ecological and functional consequences of coastal ocean acidification: Perspectives from the Baltic-Skagerrak System. AMBIO 2019; 48:831-854. [PMID: 30506502 PMCID: PMC6541583 DOI: 10.1007/s13280-018-1110-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 05/21/2018] [Accepted: 10/03/2018] [Indexed: 05/03/2023]
Abstract
Ocean temperatures are rising; species are shifting poleward, and pH is falling (ocean acidification, OA). We summarise current understanding of OA in the brackish Baltic-Skagerrak System, focussing on the direct, indirect and interactive effects of OA with other anthropogenic drivers on marine biogeochemistry, organisms and ecosystems. Substantial recent advances reveal a pattern of stronger responses (positive or negative) of species than ecosystems, more positive responses at lower trophic levels and strong indirect interactions in food-webs. Common emergent themes were as follows: OA drives planktonic systems toward the microbial loop, reducing energy transfer to zooplankton and fish; and nutrient/food availability ameliorates negative impacts of OA. We identify several key areas for further research, notably the need for OA-relevant biogeochemical and ecosystem models, and understanding the ecological and evolutionary capacity of Baltic-Skagerrak ecosystems to respond to OA and other anthropogenic drivers.
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Affiliation(s)
- Jonathan N. Havenhand
- Department of Marine Sciences, Tjärnö Marine Laboratory, University of Gothenburg, Strömstad, 45296 Gothenburg, Sweden
| | | | - Susa Niiranen
- Stockholm Resilience Centre, Stockholm University, Kräftriket 2B, 10691 Stockholm, Sweden
| | - Max Troell
- Stockholm Resilience Centre, Stockholm University, Kräftriket 2B, 10691 Stockholm, Sweden
- Beijer Institute of Ecological Economics, Royal Swedish Academy of Science, Lilla Frescativägen 4, 10405 Stockholm, Sweden
| | - Anne-Sophie Crépin
- Beijer Institute of Ecological Economics, Royal Swedish Academy of Science, Lilla Frescativägen 4, 10405 Stockholm, Sweden
| | - Sverker Jagers
- Department of Political Sciences, University of Gothenburg, Box 711, Sprängkullsgatan 19, 40530 Gothenburg, Sweden
| | - David Langlet
- Department of Law, University of Gothenburg, Box 650, 40530 Gothenburg, Sweden
| | - Simon Matti
- Department of Political Sciences, Luleå University of Technology, 97187 Luleå, Sweden
| | - David Turner
- Department of Marine Sciences, University of Gothenburg, Box 461, 40530 Gothenburg, Sweden
| | - Monika Winder
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 10691 Stockholm, Sweden
| | - Pierre de Wit
- Department of Marine Sciences, Tjärnö Marine Laboratory, University of Gothenburg, Strömstad, 45296 Gothenburg, Sweden
| | - Leif G. Anderson
- Department of Marine Sciences, University of Gothenburg, Box 461, 40530 Gothenburg, Sweden
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31
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Vaqué D, Lara E, Arrieta JM, Holding J, Sà EL, Hendriks IE, Coello-Camba A, Alvarez M, Agustí S, Wassmann PF, Duarte CM. Warming and CO 2 Enhance Arctic Heterotrophic Microbial Activity. Front Microbiol 2019; 10:494. [PMID: 30949141 PMCID: PMC6436474 DOI: 10.3389/fmicb.2019.00494] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2018] [Accepted: 02/26/2019] [Indexed: 11/13/2022] Open
Abstract
Ocean acidification and warming are two main consequences of climate change that can directly affect biological and ecosystem processes in marine habitats. The Arctic Ocean is the region of the world experiencing climate change at the steepest rate compared with other latitudes. Since marine planktonic microorganisms play a key role in the biogeochemical cycles in the ocean it is crucial to simultaneously evaluate the effect of warming and increasing CO2 on marine microbial communities. In 20 L experimental microcosms filled with water from a high-Arctic fjord (Svalbard), we examined changes in phototrophic and heterotrophic microbial abundances and processes [bacterial production (BP) and mortality], and viral activity (lytic and lysogenic) in relation to warming and elevated CO2. The summer microbial plankton community living at 1.4°C in situ temperature, was exposed to increased CO2 concentrations (135–2,318 μatm) in three controlled temperature treatments (1, 6, and 10°C) at the UNIS installations in Longyearbyen (Svalbard), in summer 2010. Results showed that chlorophyll a concentration decreased at increasing temperatures, while BP significantly increased with pCO2 at 6 and 10°C. Lytic viral production was not affected by changes in pCO2 and temperature, while lysogeny increased significantly at increasing levels of pCO2, especially at 10°C (R2 = 0.858, p = 0.02). Moreover, protistan grazing rates showed a positive interaction between pCO2 and temperature. The averaged percentage of bacteria grazed per day was higher (19.56 ± 2.77% d-1) than the averaged percentage of lysed bacteria by virus (7.18 ± 1.50% d-1) for all treatments. Furthermore, the relationship among microbial abundances and processes showed that BP was significantly related to phototrophic pico/nanoflagellate abundance in the 1°C and the 6°C treatments, and BP triggered viral activity, mainly lysogeny at 6 and 10°C, while bacterial mortality rates was significantly related to bacterial abundances at 6°C. Consequently, our experimental results suggested that future increases in water temperature and pCO2 in Arctic waters will produce a decrease of phytoplankton biomass, enhancement of BP and changes in the carbon fluxes within the microbial food web. All these heterotrophic processes will contribute to weakening the CO2 sink capacity of the Arctic plankton community.
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Affiliation(s)
- Dolors Vaqué
- Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Elena Lara
- Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Jesús M Arrieta
- Centro Oceanográfico de Canarias (IEO), Santa Cruz de Tenerife, Spain
| | - Johnna Holding
- Global Change Research Group, IMEDEA (CSIC-UIB) Institut Mediterrani d'Estudis Avançats, Esporles, Spain.,Arctic Research Centre, Aarhus University, Aarhus, Denmark
| | - Elisabet L Sà
- Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar (CSIC), Barcelona, Spain
| | - Iris E Hendriks
- Global Change Research Group, IMEDEA (CSIC-UIB) Institut Mediterrani d'Estudis Avançats, Esporles, Spain
| | - Alexandra Coello-Camba
- Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | | | - Susana Agustí
- Global Change Research Group, IMEDEA (CSIC-UIB) Institut Mediterrani d'Estudis Avançats, Esporles, Spain.,Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
| | - Paul F Wassmann
- Department of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics, University of Tromsø, Tromsø, Norway
| | - Carlos M Duarte
- Global Change Research Group, IMEDEA (CSIC-UIB) Institut Mediterrani d'Estudis Avançats, Esporles, Spain.,Red Sea Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia
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32
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Xu Y, Zhang T, Zhou J. Historical Occurrence of Algal Blooms in the Northern Beibu Gulf of China and Implications for Future Trends. Front Microbiol 2019; 10:451. [PMID: 30918499 PMCID: PMC6424905 DOI: 10.3389/fmicb.2019.00451] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 02/20/2019] [Indexed: 01/08/2023] Open
Abstract
Large-scale harmful algal blooms (HABs) occur in the coastal waters of the northern Beibu Gulf, China, and have deleterious effects on the marine ecosystem. The frequency, duration, and extent of HAB events in this region have increased over the last 30 years. However, the underlying causes of HABs and their likely future trends are unclear. To investigate, we evaluated historical data for temporal trends of HABs in the Beibu Gulf, and association with environmental factors as possible drivers. The results confirmed that HAB events had increased in frequency, from 6 reported events during the period 1985–2000, to 13 during 2001–2010, and 20 during 2011–2017. We also found that the geographic scale of algal blooms had increased from tens of km2 to hundreds of km2. There were temporal changes in HAB trigger species: prior to 2000, the cyanobacteria Microcystis aeruginosa was the dominant species, while during the period 2001–2010, blooms of cyanobacteria, dinoflagellates, and diatoms co-occurred, and during 2011–2017, the haptophyte Phaeocystis globosa became the dominant algal bloom species. Principal component analysis and variation partitioning analysis indicated that nutrient discharge, industrial development, and human activities were the key drivers of HAB events, and redundancy analysis showed that variation in the algal community tended to be driven by nutrient structure. Other factors, such as shipping activities and mariculture, also contributed to HAB events and algal succession, especially to P. globosa blooms. We speculated that the increasing severity of algal blooms in the northern Beibu Gulf reflects a more complex aquatic environment and highlights the damaging effects of anthropogenic inputs, urbanization development, and an expanding industrial marine-economy on the marine ecosystem. This research provides more insight into the increase of HABs and will aid their management in the Beibu Gulf.
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Affiliation(s)
- Yixiao Xu
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education, Guangxi Teachers Education University, Nanning, China.,Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Guangxi Teachers Education University, Nanning, China
| | - Teng Zhang
- Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education, Guangxi Teachers Education University, Nanning, China.,Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Guangxi Teachers Education University, Nanning, China
| | - Jin Zhou
- Division of Ocean Science and Technology, Graduate School at Shenzhen, Tsinghua University, Shenzhen, China
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33
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Berner C, Bertos-Fortis M, Pinhassi J, Legrand C. Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea. Front Microbiol 2018; 9:1562. [PMID: 30090087 PMCID: PMC6068395 DOI: 10.3389/fmicb.2018.01562] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2017] [Accepted: 06/25/2018] [Indexed: 11/13/2022] Open
Abstract
Frequencies and biomass of Baltic Sea cyanobacterial blooms are expected to be higher in future climate conditions, but also of longer duration as a result of increased sea surface temperature. Concurrently, climate predictions indicate a reduced salinity in the Baltic Sea. These climate-driven changes are expected to alter not solely the phytoplankton community but also the role of microbial communities for nutrient remineralization. Here, we present the response of summer plankton communities (filamentous cyanobacteria, picocyanobacteria, and heterotrophic bacteria) to the interplay of increasing temperature (from 16 to 18°C and 20°C) and reduced salinity (from salinity 6.9 to 5.9) in the Baltic Proper (NW Gotland Sea) using a microcosm approach. Warmer temperatures led to an earlier peak of cyanobacterial biomass, while yields were reduced. These conditions caused a decrease of nitrogen-fixers (Dolichospermum sp.) biomass, while non nitrogen-fixers (Pseudanabaena sp.) increased. Salinity reduction did not affect cyanobacterial growth nor community composition. Among heterotrophic bacteria, Actinobacteria showed preference for high temperature, while Gammaproteobacteria thrived at in situ temperature. Heterotrophic bacteria community changed drastically at lower salinity and resembled communities at high temperature. Picocyanobacteria and heterotrophic bacterial biomass had a pronounced increase associated with the decay of filamentous cyanobacteria. This suggests that shifts in community composition of heterotrophic bacteria are influenced both directly by abiotic factors (temperature and salinity) and potentially indirectly by cyanobacteria. Our findings suggest that at warmer temperature, lower yield of photosynthetic cyanobacteria combined with lower proportion of nitrogen-fixers in the community could result in lower carbon export to the marine food web with consequences for the decomposer community of heterotrophic bacteria.
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Affiliation(s)
- Christoffer Berner
- Department of Biology and Environmental Science, Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Mireia Bertos-Fortis
- Department of Biology and Environmental Science, Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Jarone Pinhassi
- Department of Biology and Environmental Science, Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden
| | - Catherine Legrand
- Department of Biology and Environmental Science, Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, Sweden
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34
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Zhou J, Richlen ML, Sehein TR, Kulis DM, Anderson DM, Cai Z. Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom. Front Microbiol 2018; 9:1201. [PMID: 29928265 PMCID: PMC5998739 DOI: 10.3389/fmicb.2018.01201] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 05/16/2018] [Indexed: 11/13/2022] Open
Abstract
Interactions between microorganisms and algae during bloom events significantly impacts their physiology, alters ambient chemistry, and shapes ecosystem diversity. The potential role these interactions have in bloom development and decline are also of particular interest given the ecosystem impacts of algal blooms. We hypothesized that microbial community structure and succession is linked to specific bloom stages, and reflects complex interactions among taxa comprising the phycosphere environment. This investigation used pyrosequencing and correlation approaches to assess patterns and associations among bacteria, archaea, and microeukaryotes during a spring bloom of the dinoflagellate Alexandrium catenella. Within the bacterial community, Gammaproteobacteria and Bacteroidetes were predominant during the initial bloom stage, while Alphaproteobacteria, Cyanobacteria, and Actinobacteria were the most abundant taxa present during bloom onset and termination. In the archaea biosphere, methanogenic members were present during the early bloom period while the majority of species identified in the late bloom stage were ammonia-oxidizing archaea and Halobacteriales. Dinoflagellates were the major eukaryotic group present during most stages of the bloom, whereas a mixed assemblage comprising diatoms, green-algae, rotifera, and other microzooplankton were present during bloom termination. Temperature and salinity were key environmental factors associated with changes in bacterial and archaeal community structure, respectively, whereas inorganic nitrogen and inorganic phosphate were associated with eukaryotic variation. The relative contribution of environmental parameters measured during the bloom to variability among samples was 35.3%. Interaction analysis showed that Maxillopoda, Spirotrichea, Dinoflagellata, and Halobacteria were keystone taxa within the positive-correlation network, while Halobacteria, Dictyochophyceae, Mamiellophyceae, and Gammaproteobacteria were the main contributors to the negative-correlation network. The positive and negative relationships were the primary drivers of mutualist and competitive interactions that impacted algal bloom fate, respectively. Functional predictions showed that blooms enhance microbial carbohydrate and energy metabolism, and alter the sulfur cycle. Our results suggest that microbial community structure is strongly linked to bloom progression, although specific drivers of community interactions and responses are not well understood. The importance of considering biotic interactions (e.g., competition, symbiosis, and predation) when investigating the link between microbial ecological behavior and an algal bloom's trajectory is also highlighted.
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Affiliation(s)
- Jin Zhou
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Graduate School at Shenzhen, Tsinghua University, Shenzhen, China
| | - Mindy L. Richlen
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, United States
| | - Taylor R. Sehein
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, United States
| | - David M. Kulis
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, United States
| | - Donald M. Anderson
- Department of Biology, Woods Hole Oceanographic Institution, Woods Hole, MA, United States
| | - Zhonghua Cai
- Shenzhen Public Platform for Screening and Application of Marine Microbial Resources, Graduate School at Shenzhen, Tsinghua University, Shenzhen, China
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Wulff A, Karlberg M, Olofsson M, Torstensson A, Riemann L, Steinhoff FS, Mohlin M, Ekstrand N, Chierici M. Ocean acidification and desalination: climate-driven change in a Baltic Sea summer microplanktonic community. MARINE BIOLOGY 2018; 165:63. [PMID: 29563649 PMCID: PMC5843668 DOI: 10.1007/s00227-018-3321-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 03/01/2018] [Indexed: 05/19/2023]
Abstract
Helcom scenario modelling suggests that the Baltic Sea, one of the largest brackish-water bodies in the world, could expect increased precipitation (decreased salinity) and increased concentration of atmospheric CO2 over the next 100 years. These changes are expected to affect the microplanktonic food web, and thereby nutrient and carbon cycling, in a complex and possibly synergistic manner. In the Baltic Proper, the extensive summer blooms dominated by the filamentous cyanobacteria Aphanizomenon sp., Dolichospermum spp. and the toxic Nodularia spumigena contribute up to 30% of the yearly new nitrogen and carbon exported to the sediment. In a 12 days outdoor microcosm experiment, we tested the combined effects of decreased salinity (from 6 to 3) and elevated CO2 concentrations (380 and 960 µatm) on a natural summer microplanktonic community, focusing on diazotrophic filamentous cyanobacteria. Elevated pCO2 had no significant effects on the natural microplanktonic community except for higher biovolume of Dolichospermum spp. and lower biomass of heterotrophic bacteria. At the end of the experimental period, heterotrophic bacterial abundance was correlated to the biovolume of N. spumigena. Lower salinity significantly affected cyanobacteria together with biovolumes of dinoflagellates, diatoms, ciliates and heterotrophic bacteria, with higher biovolume of Dolichospermum spp. and lower biovolume of N. spumigena, dinoflagellates, diatoms, ciliates and heterotrophic bacteria in reduced salinity. Although the salinity effects on diatoms were apparent, they could not clearly be separated from the influence of inorganic nutrients. We found a clear diurnal cycle in photosynthetic activity and pH, but without significant treatment effects. The same diurnal pattern was also observed in situ (pCO2, pH). Thus, considering the Baltic Proper, we do not expect any dramatic effects of increased pCO2 in combination with decreased salinity on the microplanktonic food web. However, long-term effects of the experimental treatments need to be further studied, and indirect effects of the lower salinity treatments could not be ruled out. Our study adds one piece to the complicated puzzle to reveal the combined effects of increased pCO2 and reduced salinity levels on the Baltic microplanktonic community.
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Affiliation(s)
- Angela Wulff
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
| | - Maria Karlberg
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
| | - Malin Olofsson
- Department of Marine Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
| | - Anders Torstensson
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
- Present Address: School of Oceanography, University of Washington, Box 357940, Seattle, WA 98195 USA
| | - Lasse Riemann
- Department of Biology, Marine Biological Section, University of Copenhagen, Strandpromenaden 5, 3000 Helsingør, Denmark
| | - Franciska S. Steinhoff
- Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
| | - Malin Mohlin
- Swedish Meteorological and Hydrological Institute, Sven Källfelts gata 15, 426 71 Västra Frölunda, Sweden
| | - Nina Ekstrand
- Department of Marine Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
| | - Melissa Chierici
- Department of Marine Sciences, University of Gothenburg, Box 461, 405 30 Göteborg, Sweden
- Present Address: Institute of Marine Research, Sykehusveien 23, Tromsø, Norway
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Bach LT, Alvarez-Fernandez S, Hornick T, Stuhr A, Riebesell U. Simulated ocean acidification reveals winners and losers in coastal phytoplankton. PLoS One 2017; 12:e0188198. [PMID: 29190760 PMCID: PMC5708705 DOI: 10.1371/journal.pone.0188198] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Accepted: 11/02/2017] [Indexed: 11/29/2022] Open
Abstract
The oceans absorb ~25% of the annual anthropogenic CO2 emissions. This causes a shift in the marine carbonate chemistry termed ocean acidification (OA). OA is expected to influence metabolic processes in phytoplankton species but it is unclear how the combination of individual physiological changes alters the structure of entire phytoplankton communities. To investigate this, we deployed ten pelagic mesocosms (volume ~50 m3) for 113 days at the west coast of Sweden and simulated OA (pCO2 = 760 μatm) in five of them while the other five served as controls (380 μatm). We found: (1) Bulk chlorophyll a concentration and 10 out of 16 investigated phytoplankton groups were significantly and mostly positively affected by elevated CO2 concentrations. However, CO2 effects on abundance or biomass were generally subtle and present only during certain succession stages. (2) Some of the CO2-affected phytoplankton groups seemed to respond directly to altered carbonate chemistry (e.g. diatoms) while others (e.g. Synechococcus) were more likely to be indirectly affected through CO2 sensitive competitors or grazers. (3) Picoeukaryotic phytoplankton (0.2-2 μm) showed the clearest and relatively strong positive CO2 responses during several succession stages. We attribute this not only to a CO2 fertilization of their photosynthetic apparatus but also to an increased nutrient competitiveness under acidified (i.e. low pH) conditions. The stimulating influence of high CO2/low pH on picoeukaryote abundance observed in this experiment is strikingly consistent with results from previous studies, suggesting that picoeukaryotes are among the winners in a future ocean.
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Affiliation(s)
- Lennart T. Bach
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Santiago Alvarez-Fernandez
- Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Biologische Anstalt Helgoland, Helgoland, Germany
| | - Thomas Hornick
- Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB), Experimental Limnology, Stechlin, Germany
| | - Annegret Stuhr
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
| | - Ulf Riebesell
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany
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Arandia-Gorostidi N, Huete-Stauffer TM, Alonso-Sáez L, G Morán XA. Testing the metabolic theory of ecology with marine bacteria: different temperature sensitivity of major phylogenetic groups during the spring phytoplankton bloom. Environ Microbiol 2017; 19:4493-4505. [PMID: 28836731 DOI: 10.1111/1462-2920.13898] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Revised: 08/16/2017] [Accepted: 08/17/2017] [Indexed: 11/27/2022]
Abstract
Although temperature is a key driver of bacterioplankton metabolism, the effect of ocean warming on different bacterial phylogenetic groups remains unclear. Here, we conducted monthly short-term incubations with natural coastal bacterial communities over an annual cycle to test the effect of experimental temperature on the growth rates and carrying capacities of four phylogenetic groups: SAR11, Rhodobacteraceae, Gammaproteobacteria and Bacteroidetes. SAR11 was the most abundant group year-round as analysed by CARD-FISH, with maximum abundances in summer, while the other taxa peaked in spring. All groups, including SAR11, showed high temperature-sensitivity of growth rates and/or carrying capacities in spring, under phytoplankton bloom or post-bloom conditions. In that season, Rhodobacteraceae showed the strongest temperature response in growth rates, estimated here as activation energy (E, 1.43 eV), suggesting an advantage to outcompete other groups under warmer conditions. In summer E values were in general lower than 0.65 eV, the value predicted by the Metabolic Theory of Ecology (MTE). Contrary to MTE predictions, carrying capacity tended to increase with warming for all bacterial groups. Our analysis confirms that resource availability is key when addressing the temperature response of heterotrophic bacterioplankton. We further show that even under nutrient-sufficient conditions, warming differentially affected distinct bacterioplankton taxa.
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Affiliation(s)
- Nestor Arandia-Gorostidi
- Plankton Ecology and Pelagic Ecosystem Dynamics Division, Instituto Español de Oceanografía, Centro Oceanográfico de Gijón/Xixón, Gijón/Xixón, Asturias, Spain
| | - Tamara Megan Huete-Stauffer
- Plankton Ecology and Pelagic Ecosystem Dynamics Division, Instituto Español de Oceanografía, Centro Oceanográfico de Gijón/Xixón, Gijón/Xixón, Asturias, Spain.,Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Red Sea Research Center, Thuwal, Saudi Arabia
| | - Laura Alonso-Sáez
- Plankton Ecology and Pelagic Ecosystem Dynamics Division, Instituto Español de Oceanografía, Centro Oceanográfico de Gijón/Xixón, Gijón/Xixón, Asturias, Spain.,Marine Research Division, AZTI, Sukarrieta, Bizkaia, Spain
| | - Xosé Anxelu G Morán
- Biological and Environmental Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Red Sea Research Center, Thuwal, Saudi Arabia
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Currie AR, Tait K, Parry H, de Francisco-Mora B, Hicks N, Osborn AM, Widdicombe S, Stahl H. Marine Microbial Gene Abundance and Community Composition in Response to Ocean Acidification and Elevated Temperature in Two Contrasting Coastal Marine Sediments. Front Microbiol 2017; 8:1599. [PMID: 28878754 PMCID: PMC5572232 DOI: 10.3389/fmicb.2017.01599] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Accepted: 08/07/2017] [Indexed: 02/01/2023] Open
Abstract
Marine ecosystems are exposed to a range of human-induced climate stressors, in particular changing carbonate chemistry and elevated sea surface temperatures as a consequence of climate change. More research effort is needed to reduce uncertainties about the effects of global-scale warming and acidification for benthic microbial communities, which drive sedimentary biogeochemical cycles. In this research, mesocosm experiments were set up using muddy and sandy coastal sediments to investigate the independent and interactive effects of elevated carbon dioxide concentrations (750 ppm CO2) and elevated temperature (ambient +4°C) on the abundance of taxonomic and functional microbial genes. Specific quantitative PCR primers were used to target archaeal, bacterial, and cyanobacterial/chloroplast 16S rRNA in both sediment types. Nitrogen cycling genes archaeal and bacterial ammonia monooxygenase (amoA) and bacterial nitrite reductase (nirS) were specifically targeted to identify changes in microbial gene abundance and potential impacts on nitrogen cycling. In muddy sediment, microbial gene abundance, including amoA and nirS genes, increased under elevated temperature and reduced under elevated CO2 after 28 days, accompanied by shifts in community composition. In contrast, the combined stressor treatment showed a non-additive effect with lower microbial gene abundance throughout the experiment. The response of microbial communities in the sandy sediment was less pronounced, with the most noticeable response seen in the archaeal gene abundances in response to environmental stressors over time. 16S rRNA genes (amoA and nirS) were lower in abundance in the combined stressor treatments in sandy sediments. Our results indicated that marine benthic microorganisms, especially in muddy sediments, are susceptible to changes in ocean carbonate chemistry and seawater temperature, which ultimately may have an impact upon key benthic biogeochemical cycles.
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Affiliation(s)
- Ashleigh R. Currie
- Biogeochemistry and Earth Science, Scottish Association for Marine Science, Scottish Marine InstituteOban, United Kingdom
| | - Karen Tait
- Plymouth Marine LaboratoryPlymouth, United Kingdom
| | - Helen Parry
- Plymouth Marine LaboratoryPlymouth, United Kingdom
| | - Beatriz de Francisco-Mora
- Biogeochemistry and Earth Science, Scottish Association for Marine Science, Scottish Marine InstituteOban, United Kingdom
| | - Natalie Hicks
- Biogeochemistry and Earth Science, Scottish Association for Marine Science, Scottish Marine InstituteOban, United Kingdom
| | - A. Mark Osborn
- School of Biological Sciences, University of HullHull, United Kingdom
- School of Science, Royal Melbourne Institute of Technology University, BundooraVIC, Australia
| | | | - Henrik Stahl
- Biogeochemistry and Earth Science, Scottish Association for Marine Science, Scottish Marine InstituteOban, United Kingdom
- Natural Science and Public Health, Zayed UniversityDubai, United Arab Emirates
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40
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Thiele S, Richter M, Balestra C, Glöckner FO, Casotti R. Taxonomic and functional diversity of a coastal planktonic bacterial community in a river-influenced marine area. Mar Genomics 2017; 32:61-69. [DOI: 10.1016/j.margen.2016.12.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Revised: 12/22/2016] [Accepted: 12/28/2016] [Indexed: 01/19/2023]
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Dong Z, Wang K, Chen X, Zhu J, Hu C, Zhang D. Temporal dynamics of bacterioplankton communities in response to excessive nitrate loading in oligotrophic coastal water. MARINE POLLUTION BULLETIN 2017; 114:656-663. [PMID: 27773533 DOI: 10.1016/j.marpolbul.2016.10.041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 10/10/2016] [Accepted: 10/14/2016] [Indexed: 06/06/2023]
Abstract
Coastal ecosystems are receiving elevated loads of nitrogen (N) from anthropogenic sources. Understanding how excessive N loading affects bacterioplankton communities is critical to predict the biodiversity of marine ecosystems under conditions of eutrophic disturbance. In this study, oligotrophic coastal water microcosms were perturbed with nitrate in two loading modes: 1) one-off loading at the beginning of the incubation period; and 2) periodic loading every two days for 16days. Turnover in the bacterioplankton community was investigated by 16S rDNA gene amplicon sequencing. The alpha diversity of the bacterioplankton community showed great temporal variability and similar responses to the different treatments. Bacterioplankton community composition was influenced remarkably by time and N loading mode. The effects of N loading on bacterioplankton community structure showed obvious temporal variation, probably because of the great temporal variation in environmental parameters. This study provides insights into the effects of N pollution in anthropogenically perturbed marine environments.
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Affiliation(s)
- Zhiying Dong
- School of Marine Sciences, Ningbo University, Ningbo 315211, China; Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo 315211, China
| | - Kai Wang
- School of Marine Sciences, Ningbo University, Ningbo 315211, China; Collaborative Innovation Center for Zhejiang Marine High-efficiency and Healthy Aquaculture, Ningbo 315211, China
| | - Xinxin Chen
- School of Marine Sciences, Ningbo University, Ningbo 315211, China
| | - Jianlin Zhu
- Faculty of Architectural, Civil Engineering and Environment, Ningbo University, Ningbo 315211, China
| | - Changju Hu
- School of Marine Sciences, Ningbo University, Ningbo 315211, China
| | - Demin Zhang
- School of Marine Sciences, Ningbo University, Ningbo 315211, China; Collaborative Innovation Center for Zhejiang Marine High-efficiency and Healthy Aquaculture, Ningbo 315211, China.
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Xiong J, Xiong S, Qian P, Zhang D, Liu L, Fei Y. Thermal discharge-created increasing temperatures alter the bacterioplankton composition and functional redundancy. AMB Express 2016; 6:68. [PMID: 27620732 PMCID: PMC5016491 DOI: 10.1186/s13568-016-0238-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Accepted: 08/30/2016] [Indexed: 01/07/2023] Open
Abstract
Elevated seawater temperature has altered the coupling between coastal primary production and heterotrophic bacterioplankton respiration. This shift, in turn, could influence the feedback of ocean ecosystem to climate warming. However, little is known about how natural bacterioplankton community responds to increasing seawater temperature. To investigate warming effects on the bacterioplankton community, we collected water samples from temperature gradients (ranged from 15.0 to 18.6 °C) created by a thermal flume of a coal power plant. The results showed that increasing temperatures significantly stimulated bacterial abundance, grazing rate, and altered bacterioplankton community compositions (BCCs). The spatial distribution of bacterioplankton community followed a distance similarity decay relationship, with a turnover of 0.005. A variance partitioning analysis showed that temperature directly constrained 2.01 % variation in BCCs, while temperature-induced changes in water geochemical and grazing rate indirectly accounted for 4.03 and 12.8 % of the community variance, respectively. Furthermore, the relative abundances of 24 bacterial families were linearly increased or decreased (P < 0.05 in all cases) with increasing temperatures. Notably, the change pattern for a given bacterial family was in concert with its known functions. In addition, community functional redundancy consistently decreased along the temperature gradient. This study demonstrates that elevated temperature, combined with substrate supply and trophic interactions, dramatically alters BCCs, concomitant with decreases in functional redundancy. The responses of sensitive assemblages are temperature dependent, which could indicate temperature departures.
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Herlemann DPR, Lundin D, Andersson AF, Labrenz M, Jürgens K. Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea. Front Microbiol 2016; 7:1883. [PMID: 27933046 PMCID: PMC5121245 DOI: 10.3389/fmicb.2016.01883] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Accepted: 11/09/2016] [Indexed: 11/22/2022] Open
Abstract
Understanding the key processes that control bacterial community composition has enabled predictions of bacterial distribution and function within ecosystems. In this study, we used the Baltic Sea as a model system to quantify the phylogenetic signal of salinity and season with respect to bacterioplankton community composition. The abundances of 16S rRNA gene amplicon sequencing reads were analyzed from samples obtained from similar geographic locations in July and February along a brackish to marine salinity gradient in the Baltic Sea. While there was no distinct pattern of bacterial richness at different salinities, the number of bacterial phylotypes in winter was significantly higher than in summer. Bacterial community composition in brackish vs. marine conditions, and in July vs. February was significantly different. Non-metric multidimensional scaling showed that bacterial community composition was primarily separated according to salinity and secondly according to seasonal differences at all taxonomic ranks tested. Similarly, quantitative phylogenetic clustering implicated a phylogenetic signal for both salinity and seasonality. Our results suggest that global patterns of bacterial community composition with respect to salinity and season are the result of phylogenetically clustered ecological preferences with stronger imprints from salinity.
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Affiliation(s)
| | - Daniel Lundin
- Centre for Ecology and Evolution in Microbial Model Systems, Linnaeus UniversityKalmar, Sweden
| | - Anders F. Andersson
- Science for Life Laboratory, Division of Gene Technology, School of Biotechnology, KTH Royal Institute of TechnologyStockholm, Sweden
| | | | - Klaus Jürgens
- Leibniz Institute for Baltic Sea ResearchWarnemünde, Germany
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Bergen B, Endres S, Engel A, Zark M, Dittmar T, Sommer U, Jürgens K. Acidification and warming affect prominent bacteria in two seasonal phytoplankton bloom mesocosms. Environ Microbiol 2016; 18:4579-4595. [PMID: 27690275 DOI: 10.1111/1462-2920.13549] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Revised: 08/10/2016] [Accepted: 09/26/2016] [Indexed: 01/05/2023]
Abstract
In contrast to clear stimulatory effects of rising temperature, recent studies of the effects of CO2 on planktonic bacteria have reported conflicting results. To better understand the potential impact of predicted climate scenarios on the development and performance of bacterial communities, we performed bifactorial mesocosm experiments (pCO2 and temperature) with Baltic Sea water, during a diatom dominated bloom in autumn and a mixed phytoplankton bloom in summer. The development of bacterial community composition (BCC) followed well-known algal bloom dynamics. A principal coordinate analysis (PCoA) of bacterial OTUs (operational taxonomic units) revealed that phytoplankton succession and temperature were the major variables structuring the bacterial community whereas the impact of pCO2 was weak. Prokaryotic abundance and carbon production, and organic matter concentration and composition were partly affected by temperature but not by increased pCO2 . However, pCO2 did have significant and potentially direct effects on the relative abundance of several dominant OTUs; in some cases, these effects were accompanied by an antagonistic impact of temperature. Our results suggest the necessity of high-resolution BCC analyses and statistical analyses at the OTU level to detect the strong impact of CO2 on specific bacterial groups, which in turn might also influence specific organic matter degradation processes.
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Affiliation(s)
- Benjamin Bergen
- Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Biological Oceanography, Seestrasse 15, Rostock, D-18119, Germany
| | - Sonja Endres
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Biological Oceanography, Düsternbrooker Weg 20, Kiel, D-24105, Germany
| | - Anja Engel
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Biological Oceanography, Düsternbrooker Weg 20, Kiel, D-24105, Germany
| | - Maren Zark
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Marine Geochemistry, Carl von Ossietzky University Oldenburg, Carl-von-Ossietzky-Straße 911, Oldenburg, D-26113, Germany
| | - Thorsten Dittmar
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Marine Geochemistry, Carl von Ossietzky University Oldenburg, Carl-von-Ossietzky-Straße 911, Oldenburg, D-26113, Germany
| | - Ulrich Sommer
- GEOMAR Helmholtz Centre for Ocean Research Kiel, Biological Oceanography, Düsternbrooker Weg 20, Kiel, D-24105, Germany
| | - Klaus Jürgens
- Leibniz Institute for Baltic Sea Research Warnemünde (IOW), Biological Oceanography, Seestrasse 15, Rostock, D-18119, Germany
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Borrero-Santiago AR, DelValls TA, Riba I. Carbon Capture and Storage (CCS): Risk assessment focused on marine bacteria. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2016; 131:157-163. [PMID: 27107627 DOI: 10.1016/j.ecoenv.2016.04.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Revised: 03/02/2016] [Accepted: 04/14/2016] [Indexed: 06/05/2023]
Abstract
Carbon capture and storage (CCS) is one of the options to mitigate the negative effects of the climate change. However, this strategy may have associated some risks such as CO2 leakages due to an escape from the reservoir. In this context, marine bacteria have been underestimated. In order to figure out the gaps and the lack of knowledge, this work summarizes different studies related to the potential effects on the marine bacteria associated with an acidification caused by a CO2 leak from CSS. An improved integrated model for risk assessment is suggested as a tool based on the rapid responses of bacterial community. Moreover, this contribution proposes a strategy for laboratory protocols using Pseudomona stanieri (CECT7202) as a case of study and analyzes the response of the strain under different CO2 conditions. Results showed significant differences (p≤0.05) under six diluted enriched medium and differences about the days in the exponential growth phase. Dilution 1:10 (Marine Broth 2216 with seawater) was selected as an appropriate growth medium for CO2 toxicity test in batch cultures. This work provide an essential and a complete tool to understand and develop a management strategy to improve future works related to possible effects produced by potential CO2 leaks.
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Affiliation(s)
- A R Borrero-Santiago
- Departamento de Química Física. Facultad de Ciencias Del Mar y Ambientales, Universidad de Cádiz. Grupo de Contaminación de sistemas acuáticos. UNESCO/UNITWIN Wicop. Polígono Río San Pedro s/n, Puerto Real, 11510 Cádiz, Spain.
| | - T A DelValls
- Departamento de Química Física. Facultad de Ciencias Del Mar y Ambientales, Universidad de Cádiz. Grupo de Contaminación de sistemas acuáticos. UNESCO/UNITWIN Wicop. Polígono Río San Pedro s/n, Puerto Real, 11510 Cádiz, Spain
| | - I Riba
- Departamento de Química Física. Facultad de Ciencias Del Mar y Ambientales, Universidad de Cádiz. Grupo de Contaminación de sistemas acuáticos. UNESCO/UNITWIN Wicop. Polígono Río San Pedro s/n, Puerto Real, 11510 Cádiz, Spain
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Distinct distribution patterns of prokaryotes between sediment and water in the Yellow River estuary. Appl Microbiol Biotechnol 2016; 100:9683-9697. [PMID: 27557722 DOI: 10.1007/s00253-016-7802-3] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2016] [Revised: 06/09/2016] [Accepted: 08/09/2016] [Indexed: 12/22/2022]
Abstract
There are close exchanges between sediment and water in estuaries; however, the patterns of prokaryotic community assembly in these two habitat types are still unclear. This study investigated the bacterial and archaeal abundance, diversity, and community composition in the sediment and the overlying water of the Yellow River estuary. Notably higher prokaryotic abundance and diversity were detected in the sediment than in the water, and bacterial abundance and diversity were remarkably higher than those of archaea. Furthermore, the ratio of bacterial to archaeal 16S rRNA gene abundance was significantly lower in the sediment than in the water. Bacterial communities at different taxonomic levels were apparently distinct between the sediment and water, but archaeal communities were not. The most dominant bacteria were affiliated with Deltaproteobacteria and Gammaproteobacteria in sediment and with Alphaproteobacteria and Betaproteobacteria in water. Euryarchaeota and Thaumarchaeota were the most abundant archaea in both habitats. Although distinct prokaryotic distribution patterns were observed, most of the dominant bacteria and archaea present were related to carbon, nitrogen, and sulfur cycling processes, such as methanogenesis, ammonia oxidation, and sulfate reduction. Unexpectedly, prokaryotes from the water showed a higher sensitivity to environmental factors, while only a few factors affected sediment communities. Additionally, some potential co-occurrence relationships between prokaryotes were also found in this study. These results suggested distinct distribution patterns of bacterial and archaeal communities between sediment and overlying water in this important temperate estuary, which may serve as a useful community model for the further ecological and evolutionary study of prokaryotes in estuarine ecosystems.
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Hassenrück C, Fink A, Lichtschlag A, Tegetmeyer HE, de Beer D, Ramette A. Quantification of the effects of ocean acidification on sediment microbial communities in the environment: the importance of ecosystem approaches. FEMS Microbiol Ecol 2016; 92:fiw027. [PMID: 26887661 PMCID: PMC4828923 DOI: 10.1093/femsec/fiw027] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 10/31/2015] [Accepted: 02/08/2016] [Indexed: 12/14/2022] Open
Abstract
To understand how ocean acidification (OA) influences sediment microbial communities, naturally CO2-rich sites are increasingly being used as OA analogues. However, the characterization of these naturally CO2-rich sites is often limited to OA-related variables, neglecting additional environmental variables that may confound OA effects. Here, we used an extensive array of sediment and bottom water parameters to evaluate pH effects on sediment microbial communities at hydrothermal CO2 seeps in Papua New Guinea. The geochemical composition of the sediment pore water showed variations in the hydrothermal signature at seep sites with comparable pH, allowing the identification of sites that may better represent future OA scenarios. At these sites, we detected a 60% shift in the microbial community composition compared with reference sites, mostly related to increases in Chloroflexi sequences. pH was among the factors significantly, yet not mainly, explaining changes in microbial community composition. pH variation may therefore often not be the primary cause of microbial changes when sampling is done along complex environmental gradients. Thus, we recommend an ecosystem approach when assessing OA effects on sediment microbial communities under natural conditions. This will enable a more reliable quantification of OA effects via a reduction of potential confounding effects.
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Affiliation(s)
- Christiane Hassenrück
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
| | - Artur Fink
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
| | - Anna Lichtschlag
- National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton SO14 3ZH, UK
| | - Halina E Tegetmeyer
- Center for Biotechnology, Bielefeld University, Universitätsstrasse 27, 33615 Bielefeld, Germany
| | - Dirk de Beer
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany
| | - Alban Ramette
- Max Planck Institute for Marine Microbiology, Celsiusstraße 1, 28359 Bremen, Germany Institute of Social and Preventive Medicine, Bern University, Finkenhubelweg 11, 3012 Bern, Switzerland
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Microbial Surface Colonization and Biofilm Development in Marine Environments. Microbiol Mol Biol Rev 2015; 80:91-138. [PMID: 26700108 DOI: 10.1128/mmbr.00037-15] [Citation(s) in RCA: 462] [Impact Index Per Article: 51.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms. Surface colonization and subsequent biofilm formation and development provide numerous advantages to these organisms and support critical ecological and biogeochemical functions in the changing marine environment. Microbial surface association also contributes to deleterious effects such as biofouling, biocorrosion, and the persistence and transmission of harmful or pathogenic microorganisms and their genetic determinants. The processes and mechanisms of colonization as well as key players among the surface-associated microbiota have been studied for several decades. Accumulating evidence indicates that specific cell-surface, cell-cell, and interpopulation interactions shape the composition, structure, spatiotemporal dynamics, and functions of surface-associated microbial communities. Several key microbial processes and mechanisms, including (i) surface, population, and community sensing and signaling, (ii) intraspecies and interspecies communication and interaction, and (iii) the regulatory balance between cooperation and competition, have been identified as critical for the microbial surface association lifestyle. In this review, recent progress in the study of marine microbial surface colonization and biofilm development is synthesized and discussed. Major gaps in our knowledge remain. We pose questions for targeted investigation of surface-specific community-level microbial features, answers to which would advance our understanding of surface-associated microbial community ecology and the biogeochemical functions of these communities at levels from molecular mechanistic details through systems biological integration.
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Yang J, Li X, Huang L, Jiang H. Actinobacterial Diversity in the Sediments of Five Cold Springs on the Qinghai-Tibet Plateau. Front Microbiol 2015; 6:1345. [PMID: 26648925 PMCID: PMC4663260 DOI: 10.3389/fmicb.2015.01345] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Accepted: 11/16/2015] [Indexed: 11/13/2022] Open
Abstract
The actinobacterial diversity was investigated in the sediments of five cold springs in Wuli region on the Qinghai-Tibet Plateau using 16S rRNA gene phylogenetic analysis. The actinobacterial communities of the studied cold springs were diverse and the obtained actinobacterial operational taxonomic units were classified into 12 actinobacterial orders (e.g., Acidimicrobiales, Corynebacteriales, Gaiellales, Geodermatophilales, Jiangellales, Kineosporiales, Micromonosporales, Micrococcales, Nakamurellales, Propionibacteriales, Pseudonocardiales, Streptomycetales) and unclassified Actinobacteria. The actinobacterial composition varied among the investigated cold springs and were significantly correlated (r = 0.748, P = 0.021) to environmental variables. The actinobacterial communities in the cold springs were more diverse than other cold habitats on the Tibetan Plateau, and their compositions showed unique geographical distribution characteristics. Statistical analyses showed that biogeographical isolation and unique environmental conditions might be major factors influencing actinobacterial distribution among the investigated cold springs.
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Affiliation(s)
- Jian Yang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences Wuhan, China
| | - Xiaoyan Li
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences Wuhan, China
| | - Liuqin Huang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences Wuhan, China
| | - Hongchen Jiang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences Wuhan, China
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50
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Vaquer-Sunyer R, Conley DJ, Muthusamy S, Lindh MV, Pinhassi J, Kritzberg ES. Dissolved Organic Nitrogen Inputs from Wastewater Treatment Plant Effluents Increase Responses of Planktonic Metabolic Rates to Warming. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:11411-11420. [PMID: 26356812 DOI: 10.1021/acs.est.5b00674] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Increased anthropogenic pressures on coastal marine ecosystems in the last century are threatening their biodiversity and functioning. Global warming and increases in nutrient loadings are two major stressors affecting these systems. Global warming is expected to increase both atmospheric and water temperatures and increase precipitation and terrestrial runoff, further increasing organic matter and nutrient inputs to coastal areas. Dissolved organic nitrogen (DON) concentrations frequently exceed those of dissolved inorganic nitrogen in aquatic systems. Many components of the DON pool have been shown to supply nitrogen nutrition to phytoplankton and bacteria. Predictions of how global warming and eutrophication will affect metabolic rates and dissolved oxygen dynamics in the future are needed to elucidate their impacts on biodiversity and ecosystem functioning. Here, we experimentally determine the effects of simultaneous DON additions and warming on planktonic community metabolism in the Baltic Sea, the largest coastal area suffering from eutrophication-driven hypoxia. Both bacterioplankton community composition and metabolic rates changed in relation to temperature. DON additions from wastewater treatment plant effluents significantly increased the activation energies for community respiration and gross primary production. Activation energies for community respiration were higher than those for gross primary production. Results support the prediction that warming of the Baltic Sea will enhance planktonic respiration rates faster than it will for planktonic primary production. Higher increases in respiration rates than in production may lead to the depletion of the oxygen pool, further aggravating hypoxia in the Baltic Sea.
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Affiliation(s)
| | - Daniel J Conley
- Department of Geology, Lund University , Sölvegatan 12, SE-223 62 Lund, Sweden
| | - Saraladevi Muthusamy
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University , SE-39182 Kalmar, Sweden
| | - Markus V Lindh
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University , SE-39182 Kalmar, Sweden
| | - Jarone Pinhassi
- Centre for Ecology and Evolution in Microbial Model Systems - EEMiS, Linnaeus University , SE-39182 Kalmar, Sweden
| | - Emma S Kritzberg
- Department of Biology, Lund University , Sölvegatan 37, SE-223 62 Lund, Sweden
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