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Tian L, An M, Liu F, Zhang Y. Fungal community characteristics of the last remaining habitat of three paphiopedilum species in China. Sci Rep 2024; 14:24737. [PMID: 39433552 PMCID: PMC11494054 DOI: 10.1038/s41598-024-75185-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 10/03/2024] [Indexed: 10/23/2024] Open
Abstract
Paphiopedilum armeniacum, Paphiopedilum wenshanense and Paphiopedilum emersonii are critically endangered wild orchids. Their populations are under severe threat, with a dramatic decline in the number of their natural distribution sites. Ex situ conservation and artificial breeding are the keys to maintaining the population to ensure the success of ex situ conservation and field return in the future. The habitat characteristics and soil nutrient information of the last remaining wild distribution sites of the three species were studied. ITS high-throughput sequencing was used to reveal the composition and structure of the soil fungal community, analyze its diversity and functional characteristics, and reveal its relationship with soil nutrients. The three species preferred to grow on low-lying, ventilated and shaded declivities with good water drainage. There were significant differences in soil alkali-hydrolyzed nitrogen and available phosphorus among the three species. There were 336 fungal species detected in the samples. On average, there were different dominant groups in the soil fungal communities of the three species. The functional groups of soil fungi within their habitats were dominated by saprophytic fungi and ectomycorrhizae, with significant differences in diversity and structure. The co-occurrence network of habitat soil fungi was mainly positive. Soil pH significantly affected soil fungal diversity within their habitats of the three paphiopedilum species. The study confirmed that the dominant groups of soil fungi were significantly correlated with soil nutrients. The three species exhibit comparable habitat inclinations, yet they display substantial variations in the composition, structure, and diversity of soil fungi. The fungal functional group is characterized by a rich presence of saprophytic fungi, a proliferation of ectomycorrhizae, and a modest occurrence of orchid mycorrhizae. The symbiotic interactions among the soil fungi associated with these three species are well-coordinated, enhancing their resilience against challenging environmental conditions. There is a significant correlation between soil environmental factors and the composition of soil fungal communities, with pH emerging as a pivotal factor regulating fungal diversity. Our research into the habitat traits and soil fungal ecosystems of the three wild Paphiopedilum species has established a cornerstone for prospective ex situ conservation measures and the eventual reestablishment of these species in their native landscapes.
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Affiliation(s)
- Li Tian
- College of Forestry, Guizhou University, Huaxi District, Guiyang City, 550025, Guizhou Province, China
| | - Mingtai An
- College of Forestry, Guizhou University, Huaxi District, Guiyang City, 550025, Guizhou Province, China.
| | - Feng Liu
- College of Forestry, Guizhou University, Huaxi District, Guiyang City, 550025, Guizhou Province, China
| | - Yang Zhang
- Guiyang City, Guizhou Province Forestry Bureau, Nanming District, Guiyang City, Guizhou Province, 550002, China
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Sallon S, Solowey E, Gostel MR, Egli M, Flematti GR, Bohman B, Schaeffer P, Adam P, Weeks A. Characterization and analysis of a Commiphora species germinated from an ancient seed suggests a possible connection to a species mentioned in the Bible. Commun Biol 2024; 7:1109. [PMID: 39256474 PMCID: PMC11387840 DOI: 10.1038/s42003-024-06721-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 08/12/2024] [Indexed: 09/12/2024] Open
Abstract
A seed recovered during archaeological excavations of a cave in the Judean desert was germinated, with radiocarbon analysis indicating an age of 993 CE- 1202 calCE. DNA sequencing and phylogenetic analysis identified the seedling as belonging to the angiosperm genus Commiphora Jacq., sister to three Southern African Commiphora species, but unique from all other species sampled to date. The germinated seedling was not closely related to Commiphora species commonly harvested for their fragrant oleoresins including Commiphora gileadensis (L.) C.Chr., candidate for the locally extinct "Judean Balsam" or "Balm of Gilead" of antiquity. GC-MS analysis revealed minimal fragrant compounds but abundance of those associated with multi-target bioactivity and a previously undescribed glycolipid compound series. Several hypotheses are offered to explain the origins, implications and ethnobotanical significance of this unknown Commiphora sp., to the best of our knowledge the first identified from an archaeological site in this region, including identification with a resin producing tree mentioned in Biblical sources and possible agricultural relationship with the historic Judean Balsam.
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Affiliation(s)
- Sarah Sallon
- Natural Medicine Research Center (NMRC), Hadassah Medical Organization, Jerusalem, 91120, Israel.
| | - Elaine Solowey
- Centre for Sustainable Agriculture, Arava Institute of Environmental Studies (AIES) Kibbutz, Ketura, 88840, Israel
| | - Morgan R Gostel
- Botanical Research Institute of Texas, 1700 University Drive, Fort Worth, Texas, 76132-3400, USA
| | - Markus Egli
- Department of Geography, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland
| | - Gavin R Flematti
- School of Molecular Sciences, University of Western Australia, Crawley, WA, Australia
| | - Björn Bohman
- School of Molecular Sciences, University of Western Australia, Crawley, WA, Australia
- Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Philippe Schaeffer
- Université de Strasbourg-CNRS, Institut de Chimie de Strasbourg UMR 7177, F-67000, Strasbourg, France
| | - Pierre Adam
- Université de Strasbourg-CNRS, Institut de Chimie de Strasbourg UMR 7177, F-67000, Strasbourg, France
| | - Andrea Weeks
- Department of Biology and Ted R. Bradley Herbarium, George Mason University, 4400 University Drive, Fairfax, Virginia, 22030, USA
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Quintana I, Rivers M, Davies K. Conservation Action Tracker: A tool to identify and monitor conservation actions for tree species. APPLICATIONS IN PLANT SCIENCES 2024; 12:e11579. [PMID: 38912127 PMCID: PMC11192161 DOI: 10.1002/aps3.11579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 12/28/2023] [Accepted: 01/16/2024] [Indexed: 06/25/2024]
Abstract
Premise The GlobalTree Portal, hosted by Botanic Gardens Conservation International, provides access to information on the approximately 58,000 tree species worldwide. Included in the GlobalTree Portal is the Conservation Action Tracker, a dynamic and collaborative database to identify and monitor conservation actions for tree species globally. Methods The Conservation Action Tracker collates conservation action information at the species level, including species recovery/action plans, ex situ collections, propagation protocols, in situ management, species protection policy, and education/awareness campaigns. Results To date, the Conservation Action Tracker contains conservation action information for 4126 tree species, including 2161 threatened species, of which 659 are classified as Vulnerable, 783 as Endangered, and 719 as Critically Endangered. It covers conservation action information for at least one tree species in every country; however, more information is needed for 89% of Vulnerable, 87% of Endangered, and 77% of Critically Endangered tree species. Discussion Monitoring species conservation actions can support the prioritization and scaling up of conservation practices by sharing knowledge, increasing collaboration, enabling the identification of conservation gaps, and making the information available to be used by decision-makers. Tracking conservation actions at the species level is, therefore, essential to guide future conservation efforts. Increasing the amount of data in the Conservation Action Tracker will improve the tool's ability to guide future conservation efforts and avoid the extinction of tree species.
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Affiliation(s)
- Itxaso Quintana
- Botanic Gardens Conservation International (BGCI)Descanso House, 199 Kew RoadRichmondTW9 3BWUnited Kingdom
| | - Malin Rivers
- Botanic Gardens Conservation International (BGCI)Descanso House, 199 Kew RoadRichmondTW9 3BWUnited Kingdom
| | - Katharine Davies
- Botanic Gardens Conservation International (BGCI)Descanso House, 199 Kew RoadRichmondTW9 3BWUnited Kingdom
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Christie K, Pierson NR, Holeski LM, Lowry DB. Resurrected seeds from herbarium specimens reveal rapid evolution of drought resistance in a selfing annual. AMERICAN JOURNAL OF BOTANY 2023; 110:e16265. [PMID: 38102863 DOI: 10.1002/ajb2.16265] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 10/19/2023] [Accepted: 10/20/2023] [Indexed: 12/17/2023]
Abstract
PREMISE Increased aridity and drought associated with climate change are exerting unprecedented selection pressures on plant populations. Whether populations can rapidly adapt, and which life history traits might confer increased fitness under drought, remain outstanding questions. METHODS We utilized a resurrection ecology approach, leveraging dormant seeds from herbarium collections to assess whether populations of Plantago patagonica from the semi-arid Colorado Plateau have rapidly evolved in response to approximately ten years of intense drought in the region. We quantified multiple traits associated with drought escape and drought resistance and assessed the survival of ancestors and descendants under simulated drought. RESULTS Descendant populations displayed a significant shift in resource allocation, in which they invested less in reproductive tissues and relatively more in both above- and below-ground vegetative tissues. Plants with greater leaf biomass survived longer under terminal drought; moreover, even after accounting for the effect of increased leaf biomass, descendant seedlings survived drought longer than their ancestors. CONCLUSIONS Our results document rapid adaptive evolution in response to climate change in a selfing annual and suggest that shifts in tissue allocation strategies may underlie adaptive responses to drought in arid or semi-arid environments. This work also illustrates a novel approach, documenting that under specific circumstances, seeds from herbarium specimens may provide an untapped source of dormant propagules for future resurrection experiments.
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Affiliation(s)
- Kyle Christie
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Natalie R Pierson
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
| | - Liza M Holeski
- Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, 86011, USA
- Center for Adaptive Western Landscapes, Northern Arizona University, Flagstaff, Arizona, 86011, USA
| | - David B Lowry
- Department of Plant Biology, Michigan State University, East Lansing, Michigan, 48824, USA
- Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
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Corlett RT. Achieving zero extinction for land plants. TRENDS IN PLANT SCIENCE 2023; 28:913-923. [PMID: 37142532 DOI: 10.1016/j.tplants.2023.03.019] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 03/16/2023] [Accepted: 03/18/2023] [Indexed: 05/06/2023]
Abstract
Despite the importance of plants for humans and the threats to their future, plant conservation receives far less support compared with vertebrate conservation. Plants are much cheaper and easier to conserve than are animals, but, although there are no technical reasons why any plant species should become extinct, inadequate funding and the shortage of skilled people has created barriers to their conservation. These barriers include the incomplete inventory, the low proportion of species with conservation status assessments, partial online data accessibility, varied data quality, and insufficient investment in both in and ex situ conservation. Machine learning, citizen science (CS), and new technologies could mitigate these problems, but we need to set national and global targets of zero plant extinction to attract greater support.
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Affiliation(s)
- Richard T Corlett
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Yunnan 666303, China; Center of Conservation Biology, Core Botanical Gardens, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Yunnan 666303, China.
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6
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Survey for threatened plants in riparian fragmented forests: A case study on three Vatica (Dipterocarpaceae) species in Kapuas Hulu, West Kalimantan. J Nat Conserv 2023. [DOI: 10.1016/j.jnc.2023.126367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]
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Smith D, Abeli T, Bruns EB, Dalrymple SE, Foster J, Gilbert TC, Hogg CJ, Lloyd NA, Meyer A, Moehrenschlager A, Murrell O, Rodriguez JP, Smith PP, Terry A, Ewen JG. Extinct in the wild: The precarious state of Earth's most threatened group of species. Science 2023; 379:eadd2889. [PMID: 36821678 DOI: 10.1126/science.add2889] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Extinct in the Wild (EW) species are placed at the highest risk of extinction under the International Union for Conservation of Nature Red List, but the extent and variation in this risk have never been evaluated. Harnessing global databases of ex situ animal and plant holdings, we report on the perilous state of EW species. Most EW animal species-already compromised by their small number of founders-are maintained at population sizes far below the thresholds necessary to ensure demographic security. Most EW plant species depend on live propagation by a small number of botanic gardens, with a minority secured at seed bank institutions. Both extinctions and recoveries are possible fates for EW species. We urgently call for international effort to enable the latter.
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Affiliation(s)
- Donal Smith
- Institute of Zoology, Zoological Society of London, London, UK
| | - Thomas Abeli
- Department of Science, University of Roma Tre, Roma, Italy
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
| | - Emily Beckman Bruns
- Botanic Gardens Conservation International-US, San Marino, CA, USA
- Chicago Botanic Gardens, Chicago, IL, USA
| | - Sarah E Dalrymple
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
- School of Biological and Environmental Sciences, Liverpool John Moores University, Liverpool, UK
| | - Jeremy Foster
- Botanic Gardens Conservation International-US, San Marino, CA, USA
- Chicago Botanic Gardens, Chicago, IL, USA
- Northwestern University, Evanston, IL, USA
| | - Tania C Gilbert
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
- Marwell Wildlife, Hampshire, UK
- School of Biological Sciences, University of Southampton, Southampton, UK
| | - Carolyn J Hogg
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
- Faculty of Science, School of Life and Environmental Sciences, The University of Sydney, Sydney, Australia
| | - Natasha A Lloyd
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
- Wilder Institute / Calgary Zoo, Calgary, Canada
| | - Abby Meyer
- Botanic Gardens Conservation International-US, San Marino, CA, USA
| | - Axel Moehrenschlager
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
- Wilder Institute / Calgary Zoo, Calgary, Canada
- Department of Biological Sciences, University of Calgary, Canada
| | - Olivia Murrell
- Botanic Gardens Conservation International-US, San Marino, CA, USA
- Chicago Botanic Gardens, Chicago, IL, USA
- Northwestern University, Evanston, IL, USA
| | - Jon Paul Rodriguez
- IUCN Species Survival Commission, Caracas, Venezuela
- Instituto Venezolano de Investigaciones Científicas, and Provita, Caracas, Venezuela
| | - Paul P Smith
- Botanic Gardens Conservation International, Surrey, UK
| | | | - John G Ewen
- Institute of Zoology, Zoological Society of London, London, UK
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Canada
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Xu Y, Zang R. Conservation of rare and endangered plant species in China. iScience 2023; 26:106008. [PMID: 36798437 PMCID: PMC9926111 DOI: 10.1016/j.isci.2023.106008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Rare and endangered plant species (REPs) are facing high danger of extinction, yet a comprehensive and up-to-date review on their conservation in China is still lacking. This paper systematically collected studies and achievements on REPs conservation, including species surveys and monitoring, cause of endangerment, in situ conservation, ex situ conservation, reintroduction, propagation, conservation legislation, public participation, progress in conservation of wild plant with extremely small populations, and progress in China's implementation of the Convention on Biological Diversity. Although enormous advances have been made in conservation policies and legislations, protection systems, and research, as well as public education and international collaborations, the conservation efficiency is still restricted largely by the conflict between economic growth and biodiversity conservation in China. In order to meet its commitments to the new Post-2020 Global Biodiversity Framework, more work on basic investigation and long-term observation, as well as advanced technologies and application-oriented research on REPs should be carried out.
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Affiliation(s)
- Yue Xu
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
| | - Runguo Zang
- Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China
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Addressing Threats and Ecosystem Intactness to Enable Action for Extinct in the Wild Species. DIVERSITY 2023. [DOI: 10.3390/d15020268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Abstract
The species listed as Extinct in the Wild (EW) in the IUCN Red List of Threatened Species consist of 84 plants and animals that have been lost from their indigenous range. EW species are therefore restricted to ex situ conservation facilities and often have populations founded with few individuals. Our analysis demonstrates that 60% of EW species are associated with ecoregions that have very low proportions of intact habitat. Furthermore, threats such as invasive species, pollution, and climate change affect just over half of EW species and compound the obstacles facing their reinstatement to the wild. Despite these bleak assessments, there are various options for EW recovery. We present five scenarios that encapsulate the circumstances facing EW species and suggest potential conservation action for each of these situations. We illustrate these scenarios using case studies of EW species that demonstrate how the various options of ex situ management, reintroduction, and assisted colonisation to new habitat can be used to address the very exacting requirements of EW species. Our aim is to present a broad review of the obstacles facing the recovery of EW species whilst inspiring action to prevent the extinction of the most imperilled species on the planet.
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Makuch WA, Wanke S, Ditsch B, Richter F, Herklotz V, Ahlborn J, Ritz CM. Population genetics and plant growth experiments as prerequisite for conservation measures of the rare European aquatic plant Luronium natans (Alismataceae). FRONTIERS IN PLANT SCIENCE 2023; 13:1069842. [PMID: 36714738 PMCID: PMC9880460 DOI: 10.3389/fpls.2022.1069842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 12/14/2022] [Indexed: 06/18/2023]
Abstract
Information provided by population genetic studies is often necessary to effectively protect endangered species. In general, such data is scarce for aquatic plants and this holds also for Luronium natans, an aquatic macrophyte endemic to northwestern and western Europe. It is threatened across its whole distribution range due to human influences, in particular due to eutrophication and intensive fish farming. In spite of habitat protection populations continue to decline and re-introductions are one possibility to prevent the species' extinction. Therefore, insights in genetic diversity and relatedness of source populations is warranted. Thus, we performed Amplified Fragment-Length Polymorphism (AFLP) on two large populations in Saxony, Germany (Großenhainer Pflege and Niederspree), complemented with numerous additional occurrences from Europe. In addition, we conducted experiments on plant growth to assess optimal conditions for ex-situ cultivation taking water temperature, water level and substrate into account. We revealed considerably high levels of genetic diversity within populations (Shannon Indices ranged from 0.367 to 0.416) implying that populations are not restricted to clonal growth only but reproduce also by open-pollinated flowers. Remarkably, the two geographically close Saxon populations were genetically distant to each other but subpopulations within a locality were completely intermingled. Concerning optimal cultivation conditions, longest roots were obtained at temperatures >14°C and saturated, but not submerging water levels. Thus, our findings advocate for a re-introduction scheme from nearby source populations and provide detailed information on successful ex-situ cultivation.
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Affiliation(s)
- Weronika A. Makuch
- Institute of Biology, Geobotany and Botanical Garden, Martin-Luther University Halle, Halle, Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institut für Botanik, Fakultät Biologie, Technische Universität Dresden, Dresden, Germany
| | - Stefan Wanke
- Institut für Botanik, Fakultät Biologie, Technische Universität Dresden, Dresden, Germany
- Departamento de Botanica, Instituto de Biología, Universidad Nacional Autonoma de Mexico, Distrito Federal, Mexico
| | - Barbara Ditsch
- Botanischer Garten der Technischen Universität Dresden, Dresden, Germany
| | - Frank Richter
- Sächsisches Landesamt für Umwelt, Landwirtschaft und Geologie, Dresden, Germany
| | - Veit Herklotz
- Senckenberg Museum for Natural History Görlitz, Senckenberg – Member of the Leibniz Association, Görlitz, Germany
| | - Julian Ahlborn
- Senckenberg Museum for Natural History Görlitz, Senckenberg – Member of the Leibniz Association, Görlitz, Germany
| | - Christiane M. Ritz
- Senckenberg Museum for Natural History Görlitz, Senckenberg – Member of the Leibniz Association, Görlitz, Germany
- Professur für Biodiversität der Pflanzen, Internationales Hochschulinstitut (IHI) Zittau, Technische Universität Dresden, Zittau, Germany
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Editorial from the New Editor in Chief, Open Questions and Outlooks for the Future. JOURNAL OF ZOOLOGICAL AND BOTANICAL GARDENS 2022. [DOI: 10.3390/jzbg3040053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
I am proud to have accepted the invitation to become the new Editor in Chief of the Journal of Zoological and Botanical Gardens, a new open-access journal published by MDPI, dedicated to ex-situ research and the conservation of our planet’s biodiversity [...]
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Albani Rocchetti G, Carta A, Mondoni A, Godefroid S, Davis CC, Caneva G, Albrecht MA, Alvarado K, Bijmoer R, Borosova R, Bräuchler C, Breman E, Briggs M, Buord S, Cave LH, Da Silva NG, Davey AH, Davies RM, Dickie JB, Fabillo M, Fleischmann A, Franks A, Hall G, Kantvilas G, Klak C, Liu U, Medina L, Reinhammar LG, Sebola RJ, Schönberger I, Sweeney P, Voglmayr H, White A, Wieringa JJ, Zippel E, Abeli T. Selecting the best candidates for resurrecting extinct-in-the-wild plants from herbaria. NATURE PLANTS 2022; 8:1385-1393. [PMID: 36536014 DOI: 10.1038/s41477-022-01296-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2022] [Accepted: 10/31/2022] [Indexed: 05/12/2023]
Abstract
Resurrecting extinct species is a fascinating and challenging idea for scientists and the general public. Whereas some theoretical progress has been made for animals, the resurrection of extinct plants (de-extinction sensu lato) is a relatively recently discussed topic. In this context, the term 'de-extinction' is used sensu lato to refer to the resurrection of 'extinct in the wild' species from seeds or tissues preserved in herbaria, as we acknowledge the current impossibility of knowing a priori whether a herbarium seed is alive and can germinate. In plants, this could be achieved by germinating or in vitro tissue-culturing old diaspores such as seeds or spores available in herbarium specimens. This paper reports the first list of plant de-extinction candidates based on the actual availability of seeds in herbarium specimens of globally extinct plants. We reviewed globally extinct seed plants using online resources and additional literature on national red lists, resulting in a list of 361 extinct taxa. We then proposed a method of prioritizing candidates for seed-plant de-extinction from diaspores found in herbarium specimens and complemented this with a phylogenetic approach to identify species that may maximize evolutionarily distinct features. Finally, combining data on seed storage behaviour and longevity, as well as specimen age in the novel 'best de-extinction candidate' score (DEXSCO), we identified 556 herbarium specimens belonging to 161 extinct species with available seeds. We expect that this list of de-extinction candidates and the novel approach to rank them will boost research efforts towards the first-ever plant de-extinction.
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Affiliation(s)
| | | | - Andrea Mondoni
- Department of Earth and Environmental Science, University of Pavia, Pavia, Italy
| | - Sandrine Godefroid
- Research Department, Meise Botanic Garden, Meise, Belgium
- Service général de l'Enseignement supérieur et de la Recherche scientifique, Fédération Wallonie, Brussels, Belgium
- Laboratory of Plant Ecology and Biogeochemistry, Université libre de Bruxelles, Brussels, Belgium
| | - Charles C Davis
- Department of Organismic Biology, Harvard University, Cambridge, MA, USA
- Harvard University Herbaria, Cambridge, MA, USA
| | - Giulia Caneva
- Department of Science, University of Roma Tre, Rome, Italy
| | - Matthew A Albrecht
- Center for Conservation and Sustainable Development, Missouri Botanical Garden, St Louis, MO, USA
| | - Karla Alvarado
- Department of Cell Biology, Microbiology and Molecular Biology, University of South Florida, Tampa, FL, USA
| | - Roxali Bijmoer
- Naturalis Biodiversity Center, Botany Section, Leiden, the Netherlands
| | | | | | - Elinor Breman
- Royal Botanic Gardens, Kew, Wakehurst; Ardingly, Haywards Heath, West Sussex, UK
| | | | - Stephane Buord
- Conservatoire botanique national de Brest, Brest, France
| | | | - Nílber Gonçalves Da Silva
- Departamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Rachael M Davies
- Royal Botanic Gardens Kew, Seed and Lab-Based Collections, Sussex, UK
| | - John B Dickie
- Royal Botanic Gardens Kew, Seed and Lab-Based Collections, Sussex, UK
| | - Melodina Fabillo
- Queensland Herbarium, Department of Environment and Science, Brisbane Botanic Gardens Mt Coot-tha, Toowong, Queensland, Australia
| | - Andreas Fleischmann
- Botanische Staatssammlung München (SNSB-BSM), and GeoBio-Center LMU, Ludwig-Maximilians-University, Munich, Germany
| | - Andrew Franks
- Queensland Herbarium, Department of Environment and Science, Brisbane Botanic Gardens Mt Coot-tha, Toowong, Queensland, Australia
| | - Geoffrey Hall
- Centre sur la biodiversité de l'Université de Montréal (CITES CA-035), Montréal, Québec, Canada
| | - Gintaras Kantvilas
- Tasmanian Herbarium, Tasmanian Museum and Art Gallery, Sandy Bay, Tasmania, Australia
| | - Cornelia Klak
- Bolus Herbarium, Department of Biological Sciences, University of Cape Town, Rondebosch, South Africa
| | - Udayangani Liu
- Royal Botanic Gardens, Kew, Wellcome Trust Millennium Building, West Sussex, England, UK
| | | | | | - Ramagwai J Sebola
- South African National Biodiversity Institute, Pretoria, South Africa
- School of Animal, Plant and Environmental Sciences, University of the Witwatersrand; WITS, Johannesburg, South Africa
| | - Ines Schönberger
- Allan Herbarium, Manaaki Whenua - Landcare Research, Lincoln, New Zealand
| | - Patrick Sweeney
- Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Hermann Voglmayr
- Department for Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Adam White
- CSIRO Black Mountain Laboratories, Black Mountain, Australian Capital Territory, Australia
| | - Jan J Wieringa
- Naturalis Biodiversity Center, Botany Section, Leiden, the Netherlands
| | - Elke Zippel
- Dahlem Seed Bank, Botanical Garden and Botanic Museum Berlin, Berlin, Germany
| | - Thomas Abeli
- Department of Science, University of Roma Tre, Rome, Italy
- IUCN SSC Conservation Translocation Specialist Group, Calgary, Alberta, Canada
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Pogorzelec M, Parzymies M, Pawlik-Skowrońska B, Arciszewski M, Mielniczuk J. Searching for Optimal Substitute Habitats for Plants by Biological Experiments-A Case Study of the Endangered Species Aldrovanda vesiculosa L. (Droseraceae). INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:10743. [PMID: 36078456 PMCID: PMC9518377 DOI: 10.3390/ijerph191710743] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Revised: 08/20/2022] [Accepted: 08/24/2022] [Indexed: 06/15/2023]
Abstract
The selection of appropriate locations for the reintroduction of endangered plant species is an important process, because it usually influences the success of the conservation. The aim of this study was to select the optimal substitute habitats for Aldrovanda vesiculosa, taking into account the influence of physical-chemical factors (light intensity, temperature, pH, concentration of dissolved forms of nitrogen and cyanobacterial toxin microcystin-LR) on the efficiency of plant growth. Water analysis and field observations of the habitats of six lakes in Eastern Poland typified as potential substitute habitats for aldrovanda were carried out. The results of the experiments showed that both the concentration and the form in which nitrogen compounds are present in the environment were the factors limiting the growth rate and condition of plants. The second factor that caused the inhibition of aldrovanda growth was microcystin-LR. It was found that the habitat conditions in Lake Brzeziczno were within the ecological tolerance of the species. Particularly important was the low content of mineral compounds and the available forms of nitrogen and phosphorus in the water. Therefore, the probability of development of toxic cyanobacteria, the metabolites of which may affect the growth of A. vesiculosa, is also minimal.
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Affiliation(s)
- Magdalena Pogorzelec
- Department of Hydrobiology and Protection of Ecosystems, University of Life Sciences in Lublin, 20-262 Lublin, Poland
| | - Marzena Parzymies
- Institute of Horticultural Production, University of Life Sciences in Lublin, 20-612 Lublin, Poland
| | - Barbara Pawlik-Skowrońska
- Department of Hydrobiology and Protection of Ecosystems, University of Life Sciences in Lublin, 20-262 Lublin, Poland
| | - Michał Arciszewski
- Department of Hydrobiology and Protection of Ecosystems, University of Life Sciences in Lublin, 20-262 Lublin, Poland
| | - Jacek Mielniczuk
- Department of Applied Mathematics and Computer Science, University of Life Sciences in Lublin, 20-612 Lublin, Poland
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14
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Żabicka J, Żabicki P, Słomka A, Sliwinska E, Jędrzejczyk-Korycińska M, Nowak T, Migdałek G, Kwiatkowska M, Kuta E. Re-introduction of an extinct population of Pulsatilla patens using different propagation techniques. Sci Rep 2022; 12:14321. [PMID: 35995918 PMCID: PMC9395332 DOI: 10.1038/s41598-022-18397-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 08/10/2022] [Indexed: 11/09/2022] Open
Abstract
The study focuses on the propagation of a rare and endangered plant species (Pulsatilla patens) to re-introduce an extinct population from calamine area in Southern Poland. The plants were propagated from seeds, rhizome cuttings, or regenerated in vitro from shoot tips, hypocotyls with roots or cotyledons of seedlings on Murashige & Skoog (MS) medium supplemented with 0.25 or 0.50 mg L-1 BAP (Benzylaminopurine) via direct and indirect organogenesis or somatic embryogenesis (SE). The most efficient micropropagation method was with shoot tips as an explant on MS + 0.25 mg L-1 BAP where 97% of the explants produced multiple shoots, mass SE was observed after transfer on ½ MS with 2% saccharose; 267 (35%) shoots rooted on ½ MS + 2% saccharose were acclimatized to ex vitro conditions. Flow cytometry revealed genome size stability of propagated plantlets. Low genetic differentiation between micropropagated plantlets and initial material was indicated by ISSR (Inter Simple Sequence Repeat) markers. Totally, 132 vigorous plantlets obtained on various pathways were introduced to the field plots in 2020; 30.33% survived the winter, and several reached the generative stage and flowered in the spring 2021. In next season (March/April 2022) the number of introduced plants decreased to 25% while the number of flowering and fruiting shoots in different clumps increased in some plots. This is the first report of successful re-introduction of the endangered P. patens based on micropropagation, rhizome cuttings, and seed germination.
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Affiliation(s)
- Justyna Żabicka
- Department of Plant Cytology and Embryology, Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, 9 Gronostajowa St., 30-387, Cracow, Poland
| | - Piotr Żabicki
- Department of Plant Cytology and Embryology, Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, 9 Gronostajowa St., 30-387, Cracow, Poland
| | - Aneta Słomka
- Department of Plant Cytology and Embryology, Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, 9 Gronostajowa St., 30-387, Cracow, Poland.
| | - Elwira Sliwinska
- Laboratory of Molecular Biology and Cytometry, Department of Agricultural Biotechnology, Bydgoszcz University of Science and Technology, Kaliskiego Ave. 7, 85-796, Bydgoszcz, Poland
| | - Monika Jędrzejczyk-Korycińska
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 28 Jagiellońska St., 40-032, Katowice, Poland
| | - Teresa Nowak
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 28 Jagiellońska St., 40-032, Katowice, Poland
| | - Grzegorz Migdałek
- Institute of Biology, Pedagogical University of Cracow, 2 Podchorążych St., 30-084, Cracow, Poland
| | - Monika Kwiatkowska
- Department of Plant Cytology and Embryology, Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, 9 Gronostajowa St., 30-387, Cracow, Poland
| | - Elżbieta Kuta
- Department of Plant Cytology and Embryology, Institute of Botany, Faculty of Biology, Jagiellonian University in Kraków, 9 Gronostajowa St., 30-387, Cracow, Poland
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15
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Gao X, Liu J, Huang Z. The impact of climate change on the distribution of rare and endangered tree Firmiana kwangsiensis using the Maxent modeling. Ecol Evol 2022; 12:e9165. [PMID: 35919389 PMCID: PMC9336174 DOI: 10.1002/ece3.9165] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 07/05/2022] [Accepted: 07/12/2022] [Indexed: 11/24/2022] Open
Abstract
The upsurge in anthropogenic climate change has accelerated the habitat loss and fragmentation of wild animals and plants. The rare and endangered plants are important biodiversity elements. However, the lack of comprehensive and reliable information on the spatial distribution of these organisms has hampered holistic and efficient conservation management measures. We explored the consequences of climate change on the geographical distribution of Firmiana kwangsiensis (Malvaceae), an endangered species, to provide a reference for conservation, introduction, and cultivation of this species in new ecological zones. Modeling of the potential distribution of F. kwangsiensis under the current and two future climate scenarios in maximum entropy was performed based on 30 occurrence records and 27 environmental variables of the plant. We found that precipitation-associated and temperature-associated variables limited the potentially suitable habitats for F. kwangsiensis. Our model predicted 259,504 km2 of F. kwangsiensis habitat based on 25 percentile thresholds. However, the high suitable habitat for F. kwangsiensis is only about 41,027 km2. F. kwangsiensis is most distributed in Guangxi's protected areas. However, the existing reserves are only 2.7% of the total suitable habitat and 4.2% of the high suitable habitat for the plant, lower than the average protection area in Guangxi (7.2%). This means the current protected areas network is insufficient, underlining the need for alternative conservation mechanisms to protect the plant habitat. Our findings will help identify additional F. kwangsiensis localities and potential habitats and inform the development and implementation of conservation, management, and cultivation practices of such rare tree species.
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Affiliation(s)
- Xiaoxuan Gao
- College of Architecture and DesignUniversity of South ChinaHengyangChina
| | - Jing Liu
- College of Architecture and DesignUniversity of South ChinaHengyangChina
- School of Life SciencesCentral China Normal UniversityWuhanChina
| | - Zhihuan Huang
- College of Architecture and DesignUniversity of South ChinaHengyangChina
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16
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Pogorzelec M, Hawrylak-Nowak B, Banach-Albińska B, Szczurowska A, Parzymies M, Spólna K. From ex situ cultivation to stands in natural habitats: Critical periods for plants during the reintroduction of Salix lapponum L. in Eastern Poland. J Nat Conserv 2022. [DOI: 10.1016/j.jnc.2022.126172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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17
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Sage RF. Plant Seeds and Floristic Preservation in the Anthropocene. ANNALS OF BOTANY 2022; 129:mcac064. [PMID: 35583672 PMCID: PMC9292593 DOI: 10.1093/aob/mcac064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 05/17/2022] [Indexed: 05/20/2023]
Affiliation(s)
- Rowan F Sage
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S3B2, Canada
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18
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Bragg JG, van der Merwe M, Yap JYS, Borevitz J, Rossetto M. Plant collections for conservation and restoration: can they be adapted and adaptable? Mol Ecol Resour 2022; 22:2171-2182. [PMID: 35229464 DOI: 10.1111/1755-0998.13605] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 02/13/2022] [Accepted: 02/18/2022] [Indexed: 11/29/2022]
Abstract
Plant collections are important for the conservation of threatened species, and can provide material for ecological restoration. Typically we want collections to have high genetic diversity so populations founded from it are adaptable to future challenges. Sometimes, we have additional objectives for collections, such as enrichment for desirable traits controlled by adaptive alleles. We used landscape genomic datasets for two plants, Westringia fruticosa and Wilkiea huegeliana, to design collections that are genetically diverse, and that are adapted to warming climates. We characterized temperature adaptation by: (i) using the mean annual temperature of the sites of origin of the plants, and (ii) using the representation of alleles that are associated with warm temperatures. In Westringia fruticosa, there was a negative correlation, or tradeoff, between designing a collection that was both genetically diverse and adapted to warm temperatures. This tradeoff was weaker in Wilkiea huegeliana. We hypothesized this was because neutral genetic variation was strongly correlated with temperature in Westringia fruticosa, and not in Wilkiea huegeliana. Accordingly, when we shuffled the temperature data, breaking up the covariance between Westringia fruticosa genetic variation and temperature, there was a relaxation of the observed tradeoff. In sum, we explore tradeoffs between promoting genetic diversity and selecting for a specific trait in plant collections, and show that the strength of this tradeoff varies between two species. This represents a useful step towards understanding when selection will have a large cost in genetic diversity, and when it will be possible to design a collection that is both adapted and adaptable.
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Affiliation(s)
- Jason G Bragg
- Research Centre for Ecosystem Resilience, Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW, 2000, Australia.,School of Biological Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Marlien van der Merwe
- Research Centre for Ecosystem Resilience, Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW, 2000, Australia
| | - Jia-Yee Samantha Yap
- Research Centre for Ecosystem Resilience, Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW, 2000, Australia
| | - Justin Borevitz
- Research School of Biology, Australian National University, Canberra, Australia
| | - Maurizio Rossetto
- Research Centre for Ecosystem Resilience, Royal Botanic Gardens and Domain Trust, Mrs Macquaries Rd, Sydney, NSW, 2000, Australia
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19
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Helmanto H, Primananda E, Rinandio DS, Robiansyah I. Conservation of Dehaasia pugerensis (Lauraceae), a tree endemic to East Java (Indonesia) and last collected in 1940. J Nat Conserv 2022. [DOI: 10.1016/j.jnc.2021.126096] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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20
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Wolkis D, Jones K, Flynn T, DeMotta M, Rønsted N. Germination of seeds from herbarium specimens as a last conservation resort for resurrecting extinct or critically endangered Hawaiian plants. CONSERVATION SCIENCE AND PRACTICE 2021. [DOI: 10.1111/csp2.576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- Dustin Wolkis
- National Tropical Botanical Garden Kalaheo Hawaii USA
- Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
- Seed Conservation Specialist Group Species Survival Commission, International Union for Conservation of Nature Gland Switzerland
| | - Kelli Jones
- National Tropical Botanical Garden Kalaheo Hawaii USA
| | - Tim Flynn
- National Tropical Botanical Garden Kalaheo Hawaii USA
| | - Mike DeMotta
- National Tropical Botanical Garden Kalaheo Hawaii USA
| | - Nina Rønsted
- National Tropical Botanical Garden Kalaheo Hawaii USA
- Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
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21
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de Andrade LG, Sánchez-Tapia A, de Andrade ACS. Germination, viability and dormancy of 47 species from threatened tropical montane grassland in southeast Brazil: Implications for ex situ conservation. PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23:735-742. [PMID: 33884724 DOI: 10.1111/plb.13272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 04/06/2021] [Indexed: 06/12/2023]
Abstract
To mitigate anthropogenic impacts on plant diversity in tropical montane grasslands, one of the most threatened ecosystems in Brazil, it will be essential to develop ex situ conservation strategies to preserve wild species. The lack of basic research on the seed storage behaviour of grassland species may, however, limit their use for reintroduction and restoration projects. We investigated seed storage behaviour at the community level by comparing the effects of cold-low RH (10 °C; 10% RH) and freezing-low RH (20 °C; 10% RH) conditions on seed viability, germination and dormancy of 47 species. Fresh seeds of 43% of the species showed primary dormancy. More than half of the species showed high seed survival responses (viability >60%) under both storage temperatures. Despite a variety of dormancy responses among the different species, the low RH storage conditions tested released dormancy for most species during 12- and 30-month storage times. Multivariate analysis of the best (freezing-low RH, 30 months) storage condition evidenced the formation of five distinct groups, three with species having high conservation potential in seed banks. Although further studies are needed to test dormancy-breaking treatments and improve seed conservation practices, this first approach to assessing seed banking techniques could contribute to demand for locally adapted seeds for ecological restoration projects in tropical montane grasslands.
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Affiliation(s)
- L G de Andrade
- Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
- Seed Laboratory - Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - A Sánchez-Tapia
- Seed Laboratory - Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - A C S de Andrade
- Seed Laboratory - Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
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22
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Mamo LT, Wood G, Wheeler D, Kelaher BP, Coleman MA. Conservation genomics of a critically endangered brown seaweed. JOURNAL OF PHYCOLOGY 2021; 57:1345-1355. [PMID: 33908033 DOI: 10.1111/jpy.13177] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 02/27/2021] [Accepted: 04/09/2021] [Indexed: 06/12/2023]
Abstract
Seaweeds provide valuable ecosystem services, but many are undergoing global decline due to climate and anthropogenic stressors. The brown macroalga, Nereia lophocladia (hereafter called Nereia), is among only a handful of seaweeds globally to be listed as critically endangered and is only described from two known locations, but there exists little knowledge about this species. Here, we combine field surveys to verify the distribution of Nereia, with cutting-edge genomics to determine genetic diversity and population structure, and inform ongoing conservation actions. We expand Nereia's known distribution from one to seven locations along a 70-km long coastal stretch in New South Wales but reveal small population sizes at some sites (as few as 8 individuals despite extensive searching). A total of 1,261 genome-wide SNPs were retained from 70 individuals after filtering, and 304 outlier loci under putative selection were detected by one of three methods. Populations showed low genetic diversity (mean expected heterozygosity HE = 0.055 ± 0.014) and high levels of inbreeding within populations (mean FIS = 0.721 ± 0.085), along with high genetic differentiation among sites (mean FST = 0.276), which may increase susceptibility to future environmental change and decrease the species' ability to recover after loss. Given these findings, we recommend the consideration of both in situ and ex situ conservation measures for Nereia, as well as further research into the species' ecology and biology. Nereia remains of conservation concern and its listing as critically endangered is justified until further investigation elucidates the full distribution and adaptive capacity of the species.
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Affiliation(s)
- Lea T Mamo
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
| | - Georgina Wood
- School of Life and Environmental Sciences, Coastal and Marine Ecosystems, University of Sydney, Sydney, New South Wales, 2006, Australia
| | - David Wheeler
- NSW Department of Primary Industries, Orange, New South Wales, 2800, Australia
| | - Brendan P Kelaher
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
| | - Melinda A Coleman
- National Marine Science Centre, Southern Cross University, Coffs Harbour, New South Wales, 2450, Australia
- Department of Primary Industries, NSW Fisheries, Coffs Harbour, New South Wales, 2450, Australia
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23
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Natural and Historical Heritage of the Lisbon Botanical Gardens: An Integrative Approach with Tree Collections. PLANTS 2021; 10:plants10071367. [PMID: 34371570 PMCID: PMC8309379 DOI: 10.3390/plants10071367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Revised: 06/15/2021] [Accepted: 07/01/2021] [Indexed: 11/17/2022]
Abstract
Botanical gardens have long contributed to plant science and have played a leading role in ex situ conservation, namely of threatened tree species. Focusing on the three botanical gardens of Lisbon (i.e., Botanical Garden of Ajuda-JBA, Lisbon Botanical Garden-JBL, and Tropical Botanical Garden-JBT), this study aims to reveal their natural heritage and to understand the historical motivations for their creation. Our results showed that these gardens contain a total of 2551 tree specimens, corresponding to 462 taxa, within 80 plant families. Of these, 85 taxa are found in the three gardens, and more than half of the taxa are hosted in JBL (334 taxa), whereas 230 and 201 taxa were recorded in JBT and JBA, respectively. The motivations for the creation of each garden are reflected in the different geographic origins of the trees they host in their living collections. The Palearctic species are dominant in JBA and JBL, and Tropical trees prevail in JBT. With more than 250 years of history, these gardens hold an invaluable natural and historical heritage, with their living collections providing valuable sources of information for the conservation of threatened plant species, at local and global scales.
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24
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Horiuchi Y, Kamijo T, Tanaka N. Floral and pollination characteristics of Eriocaulon heleocharioides, an extinct species in the wild, for evidence-based conservation management. PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23:546-555. [PMID: 33471398 DOI: 10.1111/plb.13236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 01/04/2021] [Indexed: 06/12/2023]
Abstract
Generally, floral characteristics and pollination are important factors enhancing the quality and quantity of reproductive output for regeneration in plant conservation. However, lack of evidence-based management could decrease fitness under ex-situ conservation. We investigated the capitulum and pollination characteristics of Eriocaulon heleocharioides Satake (Eriocaulaceae), which is extinct in the wild, to develop an evidence-based conservation management plan incorporating previously ignored reproductive characteristics. To evaluate the functional characteristics of capitula, pollen-ovule ratio, and reproductive status (maximum pollination success/florivory damage) were investigated along six flowering sequences of capitulum. To evaluate the effect of plant density on pollen transfer, high- and low-density plots were established. Total deposited pollen on stigma, insect visitation, and visit duration per capitulum were observed. A significantly lower pollen-ovule ratio was observed in the first of six capitula, reflecting higher female functionality. The highest pollination success was found in the second-fourth capitula, whereas florivory increased along the terminal capitula position. High plant density affected the pollen deposited on stigmas via insect visitation and low pollinator visit duration. Different capitula in E. heleocharioides could have different effects: different sexual functionality, enhancement of reproductive output both in quality and quantity through active pollen transfer, and escaping from florivores. High plant density could facilitate outcross-pollen transfer in E. heleocharioides. Multiple perspectives are important for determining potential reproductive success in ex-situ conservation. Thus, density management reflecting capitulum characteristics could improve the efficiency of conservation efforts for E. heleocharioides.
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Affiliation(s)
- Y Horiuchi
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - T Kamijo
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, Japan
| | - N Tanaka
- Department of Botany, National Museum of Nature and Science, Tsukuba, Ibaraki, Japan
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25
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Bobo-Pinilla J, Salmerón-Sánchez E, Mota JF, Peñas J. Genetic conservation strategies of endemic plants from edaphic habitat islands: The case of Jacobaea auricula (Asteraceae). J Nat Conserv 2021. [DOI: 10.1016/j.jnc.2021.126004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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26
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Abstract
Resurrection genomics is an alternative to ancient DNA approaches in studying the genetics and evolution of past and possibly extinct populations. By reviving biological material such as germinating ancient seeds from archaeological and paleontological sites, or historical collections, one can study genomes of lost populations. We applied this approach by sequencing the genomes of seven Judean date palms (Phoenix dactylifera) that were germinated from ∼2,000 y old seeds recovered in the Southern Levant. Using this genomic data, we were able to document that introgressive hybridization of the wild Cretan palm Phoenix theophrasti into date palms had occurred in the Eastern Mediterranean by ∼2,200 y ago and examine the evolution of date palm populations in this pivotal region two millennia ago. Seven date palm seeds (Phoenix dactylifera L.), radiocarbon dated from the fourth century BCE to the second century CE, were recovered from archaeological sites in the Southern Levant and germinated to yield viable plants. We conducted whole-genome sequencing of these germinated ancient samples and used single-nucleotide polymorphism data to examine the genetics of these previously extinct Judean date palms. We find that the oldest seeds from the fourth to first century BCE are related to modern West Asian date varieties, but later material from the second century BCE to second century CE showed increasing genetic affinities to present-day North African date palms. Population genomic analysis reveals that by ∼2,400 to 2,000 y ago, the P. dactylifera gene pool in the Eastern Mediterranean already contained introgressed segments from the Cretan palm Phoenix theophrasti, a crucial genetic feature of the modern North African date palm populations. The P. theophrasti introgression fraction content is generally higher in the later samples, while introgression tracts are longer in these ancient germinated date palms compared to modern North African varieties. These results provide insights into crop evolution arising from an analysis of plants originating from ancient germinated seeds and demonstrate what can be accomplished with the application of a resurrection genomics approach.
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27
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Albani Rocchetti G, Armstrong CG, Abeli T, Orsenigo S, Jasper C, Joly S, Bruneau A, Zytaruk M, Vamosi JC. Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species. THE NEW PHYTOLOGIST 2021; 230:433-450. [PMID: 33280123 DOI: 10.1111/nph.17133] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 11/22/2020] [Indexed: 05/29/2023]
Abstract
Although often not collected specifically for the purposes of conservation, herbarium specimens offer sufficient information to reconstruct parameters that are needed to designate a species as 'at-risk' of extinction. While such designations should prompt quick and efficient legal action towards species recovery, such action often lags far behind and is mired in bureaucratic procedure. The increase in online digitization of natural history collections has now led to a surge in the number new studies on the uses of machine learning. These repositories of species occurrences are now equipped with advances that allow for the identification of rare species. The increase in attention devoted to estimating the scope and severity of the threats that lead to the decline of such species will increase our ability to mitigate these threats and reverse the declines, overcoming a current barrier to the recovery of many threatened plant species. Thus far, collected specimens have been used to fill gaps in systematics, range extent, and past genetic diversity. We find that they also offer material with which it is possible to foster species recovery, ecosystem restoration, and de-extinction, and these elements should be used in conjunction with machine learning and citizen science initiatives to mobilize as large a force as possible to counter current extinction trends.
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Affiliation(s)
| | | | - Thomas Abeli
- Department of Science, University Roma Tre, Viale G. Marconi 446, Roma, 00154, Italy
| | - Simone Orsenigo
- Department of Earth and Environmental Sciences, University of Pavia, Pavia, 27100, Italy
| | - Caroline Jasper
- Department of Biological Sciences, University of Calgary, Calgary, AB, T2N 1N4, Canada
| | - Simon Joly
- Montreal Botanical Garden, Montréal, QC, H1X 2B2, Canada
- Département de Sciences Biologiques and Institut de Recherche en Biologie Végétale, Université de Montréal, Montréal, QC, H1X 2B2, Canada
| | - Anne Bruneau
- Département de Sciences Biologiques and Institut de Recherche en Biologie Végétale, Université de Montréal, Montréal, QC, H1X 2B2, Canada
| | - Maria Zytaruk
- Department of English, University of Calgary, Calgary, AB, T2N 1N4, Canada
| | - Jana C Vamosi
- Department of Biological Sciences, University of Calgary, Calgary, AB, T2N 1N4, Canada
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28
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Abeli T, Albani Rocchetti G, Barina Z, Bazos I, Draper D, Grillas P, Iriondo JM, Laguna E, Moreno-Saiz JC, Bartolucci F. Seventeen 'extinct' plant species back to conservation attention in Europe. NATURE PLANTS 2021; 7:282-286. [PMID: 33686227 DOI: 10.1038/s41477-021-00878-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 02/09/2021] [Indexed: 06/12/2023]
Abstract
Seventeen European endemic plant species were considered extinct, but improved taxonomic and distribution knowledge as well as ex situ collecting activities brought them out of the extinct status. These species have now been reported into a conservation framework that may promote legal protection and in situ and ex situ conservation.
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Affiliation(s)
- Thomas Abeli
- Department of Science, University of Roma Tre, Rome, Italy
| | | | | | - Ioannis Bazos
- Section of Ecology and Systematics, Department of Biology, National and Kapodistrian University of Athens, Panepistimiopolis, Greece
| | - David Draper
- Museu Nacional de História Natural e da Ciência/CE3C- Centre for Ecology, Evolution and Environmental Change, Lisbon, Portugal
- UBC Botanical Garden & Centre for Plant Research, and Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada
| | - Patrick Grillas
- Tour du Valat, Research Institute for the Conservation of Mediterranean Wetlands, Arles, France
| | - José María Iriondo
- Biodiversity and Conservation Area, ESCET, Rey Juan Carlos University, Móstoles, Spain
| | - Emilio Laguna
- Wildlife Service - CIEF (Centre for Forestry Research and Experimentation), Generalitat Valenciana, Valencia, Spain
| | - Juan Carlos Moreno-Saiz
- Department of Biology, Autonomous University of Madrid, Madrid, Spain
- Center for Research on Biodiversity and Global Change (CIBC-UAM), Madrid, Spain
| | - Fabrizio Bartolucci
- School of Biosciences and Veterinary Medicine, University of Camerino, Camerino, Italy
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Gillson L, Seymour CL, Slingsby JA, Inouye DW. What Are the Grand Challenges for Plant Conservation in the 21st Century? FRONTIERS IN CONSERVATION SCIENCE 2020. [DOI: 10.3389/fcosc.2020.600943] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Pañitrur‐De la Fuente C, Ibáñez ST, León MF, Martínez‐Tilleria K, Sandoval A. Conservation of native plants in the seed base Bank of Chile. CONSERVATION SCIENCE AND PRACTICE 2020. [DOI: 10.1111/csp2.292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Affiliation(s)
| | - Sergio T. Ibáñez
- Instituto de Investigaciones Agropecuarias (INIA) Centro Regional de Investigación Intihuasi Vicuña Chile
| | - Mario F. León
- Instituto de Investigaciones Agropecuarias (INIA) Centro Regional de Investigación Intihuasi Vicuña Chile
| | | | - Ana Sandoval
- Instituto de Investigaciones Agropecuarias (INIA) Centro Regional de Investigación Intihuasi Vicuña Chile
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Wei X, Jiang M. Meta-analysis of genetic representativeness of plant populations under ex situ conservation in contrast to wild source populations. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2020; 35:12-23. [PMID: 32840007 DOI: 10.1111/cobi.13617] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 08/18/2020] [Indexed: 05/13/2023]
Abstract
Ex-situ conservation is widely used to protect wild plant species from extinction. However, it remains unclear how genetic variation of ex-situ plant collections reflects wild source population diversity. Here, we conduct a global meta-analysis of the genetic representativeness of ex-situ populations by comparing genetic diversity (i.e. AR, allelic richness; HE , expected heterozygosity; PPB, percentage polymorphic bands; and SWI, Shannon-Winner index), inbreeding coefficient (FIS ), and genetic differentiation between ex-situ plant collections and their wild source populations. Genetic diversity (i.e., HE , PPB, and SWI) was significantly lower in ex-situ populations than their wild source populations, while genetic differentiation between ex-situ and wild populations (ex-situ-wild FST ), but not that among ex-situ populations, was significantly higher than among wild populations. Outcrossing species, but not those with mixed mating system, had significantly lower genetic diversity in ex-situ populations, and significantly higher ex-situ-wild FST . When the collection size for ex-situ conservation was ≥30 or 50, PPB, HE , and ex-situ-wild FST were not significantly different between ex-situ and wild populations, indicating a relatively high genetic representativeness. Collecting from the entire natural distribution range and mixing collections from different sources could significantly increase the genetic representativeness of ex-situ populations. Type of ex-situ conservation (i.e., planting or seed bank) had no effect on genetic representativeness. The effect size of HE decreased and the effect size of ex-situ-wild FST increased with the duration of ex-situ conservation. Our results suggest that current ex-situ plant collections do not effectively capture the genetic variation of wild populations. Low genetic representativeness of ex-situ populations was caused by both initial incomplete sampling from wild populations and genetic erosion during ex-situ conservation. We emphasize that it is necessary to employ more thorough sampling strategies in future collecting efforts and to add new individuals where needed. Article impact statement: Low genetic representativeness of living plant collections is a worldwide problem in ex situ conservation. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Xinzeng Wei
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, 430074, China
- Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mingxi Jiang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, 430074, China
- Center of Conservation Biology, Core Botanical Gardens, Chinese Academy of Sciences, Wuhan, 430074, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
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Di Martino L, Di Cecco V, Di Cecco M, Di Santo M, Ciaschetti G, Marcantonio G. Use of native plants for ornamental purposes to conserve plant biodiversity: Case of study of Majella National Park. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125839] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Horiuchi Y, Kamijo T, Tanaka N. Biological and ecological constraints to the reintroduction of Eriocaulon heleocharioides (Eriocaulaceae): A species extinct in the wild. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125866] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Frankenstein’s work or everyday conservation? How reintroductions are informing the de-extinction debate. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125870] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Cochrane JA. Thermal Requirements Underpinning Germination Allude to Risk of Species Decline from Climate Warming. PLANTS 2020; 9:plants9060796. [PMID: 32630588 PMCID: PMC7355932 DOI: 10.3390/plants9060796] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 06/18/2020] [Accepted: 06/19/2020] [Indexed: 11/16/2022]
Abstract
The storage of seeds is a commonly used means of preserving plant genetic diversity in the face of rising threats such as climate change. Here, the findings of research from the past decade into thermal requirements for germination are synthesised for more than 100 plant species from southern Western Australia. This global biodiversity hotspot is predicted to suffer major plant collapse under forecast climate change. A temperature gradient plate was used to assess the thermal requirements underpinning seed germination in both commonly occurring and geographically restricted species. The results suggest that the local climate of the seed source sites does not drive seed responses, neither is it indicative of temperatures for optimal germination. The low diurnal phase of the temperature regime provided the most significant impact on germination timing. Several species germinated optimally at mean temperatures below or close to current wet quarter temperatures, and more than 40% of species were likely to be impacted in the future, with germination occurring under supra-optimal temperature conditions. This research highlights both species vulnerability and resilience to a warming climate during the regeneration phase of the life cycle and provides vital information for those aiming to manage, conserve and restore this regional flora.
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Affiliation(s)
- Jennifer Anne Cochrane
- Department of Biodiversity, Conservation and Attractions, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983, Australia; ; Tel.: +61-429-698-644
- Division of Ecology and Evolution, College of Science, Australian National University, Canberra ACT 0200, Australia
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Hyvärinen MT. Rubus humulifolius rescued by narrowest possible margin, conserved ex situ, and reintroduced in the wild. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125819] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Godefroid S, Piqueray J, Delescaille LM, Monty A, Mahy G. A framework to identify constraints to post-extinction recovery of plant species—Application to the case of Bromus bromoideus. J Nat Conserv 2020. [DOI: 10.1016/j.jnc.2020.125802] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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