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Ammali N, Kara R, Guetarni D, Chebloune Y. Highly pathogenic avian influenza H5N8 and H5N1 outbreaks in Algerian avian livestock production. Comp Immunol Microbiol Infect Dis 2024; 111:102202. [PMID: 38852439 DOI: 10.1016/j.cimid.2024.102202] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 05/15/2024] [Accepted: 05/26/2024] [Indexed: 06/11/2024]
Abstract
Avian Alpha-influenza-virus (AIV) massively affects poultry, targeting mainly the respiratory tract for virus replication. Recently, two major H5N8 and H5N1 outbreaks caused tremendous losses in Algerian poultry. The clinical symptoms that had not been seen in the past didn't prompt a rapid reaction to control the epidemics. We report here the characteristics of these outbreaks and the epidemiological status of AIV in Algeria. Following autopsy observation samples from target organs were taken and analyzed by the classical real-time reverse transcription polymerase chain reaction (RRT-PCR). Specific PCR HA and NA identification was used for subtyping H5 and N1/N8 genes. Systemic damage was observed in the upper-respiratory tracts with hemorrhagic and congestive tracheas, lungs, proventriculus, gut, and cecal tonsils were bloody. Out of 77 positive cases 13 were H5N8, 8 H5N1, and 10 H5Nx strains. These findings raise questions about the strain's pathotype considering severe organ damage and high mortality.
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Affiliation(s)
- Naouel Ammali
- Laboratory of Biotechnologies, Environment and Health, Biology department, Faculty of Natural and Life Sciences, University of Blida 1, BP 270 Route Soumâa, Blida, Algeria.
| | - Radhouane Kara
- Veterinary Practitioner, Avian pathology clinic, Rue 1 er Novembre 1954 Zaouia Beni Tamou, Blida, Algeria.
| | - Djamel Guetarni
- Biology department, Faculty of Natural and Life Sciences, University of Blida 1, BP 270 Route Soumâa, Blida, Algeria.
| | - Yahia Chebloune
- INRAE/UGA Laboratoire Pathogénèse et Vaccination Lentivirales, PAVAL Lab, Université Grenoble Alpes, Bat. NanoBio2, 570 rue de la chimie, domaine universitaire, St Martin d'Hères, Grenoble, France.
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2
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Sanogo IN, Guinat C, Dellicour S, Diakité MA, Niang M, Koita OA, Camus C, Ducatez M. Genetic insights of H9N2 avian influenza viruses circulating in Mali and phylogeographic patterns in Northern and Western Africa. Virus Evol 2024; 10:veae011. [PMID: 38435712 PMCID: PMC10908551 DOI: 10.1093/ve/veae011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 01/18/2024] [Accepted: 02/13/2024] [Indexed: 03/05/2024] Open
Abstract
Avian influenza viruses (AIVs) of the H9N2 subtype have become widespread in Western Africa since their first detection in 2017 in Burkina Faso. However, the genetic characteristics and diffusion patterns of the H9N2 virus remain poorly understood in Western Africa, mainly due to limited surveillance activities. In addition, Mali, a country considered to play an important role in the epidemiology of AIVs in the region, lacks more comprehensive data on the genetic characteristics of these viruses, especially the H9N2 subtype. To better understand the genetic characteristics and spatio-temporal dynamics of H9N2 virus within this region, we carried out a comprehensive genetic characterization of H9N2 viruses collected through active surveillance in live bird markets in Mali between 2021 and 2022. We also performed a continuous phylogeographic analysis to unravel the dispersal history of H9N2 lineages between Northern and Western Africa. The identified Malian H9N2 virus belonged to the G1 lineage, similar to viruses circulating in both Western and Northern Africa, and possessed multiple molecular markers associated with an increased potential for zoonotic transmission and virulence. Notably, some Malian strains carried the R-S-N-R motif at their cleavage site, mainly observed in H9N2 strains in Asia. Our continuous phylogeographic analysis revealed a single and significant long-distance lineage dispersal event of the H9N2 virus to Western Africa, likely to have originated from Morocco in 2015, shaping the westward diffusion of the H9N2 virus. Our study highlights the need for long-term surveillance of H9N2 viruses in poultry populations in Western Africa, which is crucial for a better understanding of virus evolution and effective management against potential zoonotic AIV strain emergence.
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Affiliation(s)
- Idrissa Nonmon Sanogo
- Interactions Hôtes-Agents Pathogènes (IHAP), UMR 1225, Université de Toulouse, INRAE, ENVT, Toulouse 31076, France
- Faculté d’Agronomie et de Médecine Animale (FAMA), Université de Ségou, Ségou BP 24, Mali
| | - Claire Guinat
- Interactions Hôtes-Agents Pathogènes (IHAP), UMR 1225, Université de Toulouse, INRAE, ENVT, Toulouse 31076, France
| | - Simon Dellicour
- Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Brussels B-1050, Belgium
- Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven BE-3000, Belgium
| | - Mohamed Adama Diakité
- Service diagnostic et recherche Laboratoire Central Vétérinaire, Bamako BP 2295, Mali
| | - Mamadou Niang
- Food and Agriculture Organization of the United Nations (FAO-UN), Emergency Centre for Transboundary Animal Diseases (ECTAD), Regional Office for Africa (RAF), Accra BP 1628, Ghana
| | - Ousmane A Koita
- Laboratoire de Biologie Moléculaire Appliquée, Faculté des Sciences et Techniques (FAST), University of Sciences, Techniques and Technologies of Bamako (USTTB), Mali Université de Bamako, Bamako E 3206, Mali
| | - Christelle Camus
- Interactions Hôtes-Agents Pathogènes (IHAP), UMR 1225, Université de Toulouse, INRAE, ENVT, Toulouse 31076, France
| | - Mariette Ducatez
- Interactions Hôtes-Agents Pathogènes (IHAP), UMR 1225, Université de Toulouse, INRAE, ENVT, Toulouse 31076, France
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Arbani O, Ducatez MF, Mahmoudi S, Salamat F, Khayi S, Mouahid M, Selim KM, Kichou F, Ouchhour I, El Houadfi M, Fellahi S. Low Pathogenic Avian Influenza H9N2 Viruses in Morocco: Antigenic and Molecular Evolution from 2021 to 2023. Viruses 2023; 15:2355. [PMID: 38140596 PMCID: PMC10747644 DOI: 10.3390/v15122355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 11/03/2023] [Accepted: 11/09/2023] [Indexed: 12/24/2023] Open
Abstract
Avian influenza viruses pose significant threats to both the poultry industry and public health worldwide. Among them, the H9N2 subtype has gained substantial attention due to its high prevalence, especially in Asia, the Middle East, and Africa; its ability to reassort with other influenza viruses; and its potential to infect humans. This study presents a comprehensive phylogenetic and molecular analysis of H9N2 avian influenza viruses circulating in Morocco from 2021 to 2023. Through an active epidemiological survey, a total of 1140 samples (trachea and lungs) and oropharyngeal swabs pooled into 283 pools, collected from 205 farms located in 7 regions of Morocco known for having a high density of poultry farms, were analyzed. Various poultry farms were investigated (159 broiler farms, 24 layer farms, 10 breeder farms, and 12 turkey breeder farms). A total of 21 AI H9N2 strains were isolated, and in order to understand the molecular evolution of the H9N2 avian influenza virus, their genetic sequences were determined using the Sanger sequencing technique. Phylogenetic analysis was performed using a dataset comprising global H9N2 sequences to determine the genetic relatedness and evolutionary dynamics of the Moroccan strains. The results revealed the continued circulation and diversification of H9N2 avian influenza viruses in Morocco during the study period. Real-time RT-PCR showed a positivity rate of 35.6% (73/205), with cycle threshold values ranging from 19.2 to 34.9. The phylogenetic analysis indicated that all Moroccan strains belonged to a G1-like lineage and regrouped into two distinct clusters. Our newly detected isolates aggregated distinctly from the genotypes previously isolated in Morocco, North and West Africa, and the Middle East. This indicats the potential of virus evolution resulting from both national circulation and cross-border transmission. A high genetic diversity at both nucleotide and amino-acid levels was observed among all the strains isolated in this study, as compared to H9N2 strains isolated in Morocco since 2016, which suggests the co-circulation of genetically diverse H9N2 variants. Newly discovered mutations were detected in hemagglutinin positions 226, 227, and 193 (H3 numbering), which highlights the genetic evolution of the H9N2 AIVs. These findings contribute to our understanding of the evolution and epidemiology of H9N2 in the region and provide valuable insights for the development of effective prevention and control strategies against this emerging avian influenza subtype.
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Affiliation(s)
- Oumayma Arbani
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
| | - Mariette F. Ducatez
- Laboratoire Interactions Hôtes-Agents Pathogènes (IHAP), Toulouse University, INRAE, ENVT, 31300 Toulouse, France;
| | - Salma Mahmoudi
- Laboratory of Microbiology and Molecular Biology, Department of Biology, Faculty of Sciences, Mohamed V University in Rabat, 4 Avenue Ibn Battouta, Rabat 10106, Morocco;
| | - Faiçal Salamat
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
| | - Slimane Khayi
- Biotechnology Research Unit, CRRA-Rabat, National Institute of Agricultural Research, Rabat 10101, Morocco;
| | | | - Karim M. Selim
- Reference Laboratory for Veterinary Quality Control on Poultry Production, Agriculture Research Center, Animal Health Research Institute, Giza 12618, Egypt;
| | - Faouzi Kichou
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
| | - Ikram Ouchhour
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
| | - Mohammed El Houadfi
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
| | - Siham Fellahi
- Department of Veterinary Pathology and Public Health, Institut Agronomique et Vétérinaire Hassan II, Rabat 10000, Morocco; (F.S.); (F.K.); (I.O.); (M.E.H.)
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Bóna M, Földi J, Dénes L, Harnos A, Paszerbovics B, Mándoki M. Evaluation of the Virulence of Low Pathogenic H9N2 Avian Influenza Virus Strains in Broiler Chickens. Vet Sci 2023; 10:671. [PMID: 38133222 PMCID: PMC10747561 DOI: 10.3390/vetsci10120671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 11/13/2023] [Accepted: 11/21/2023] [Indexed: 12/23/2023] Open
Abstract
Our study aimed to investigate the virulence of three recent H9N2 LPAIV strains belonging to the G1 lineage, isolated from field infections in North Africa and the Middle East. Three-week-old commercial broiler chickens (in total 62) were included and randomly allocated into three infected test groups and one control group. Each test group was inoculated intranasally/intratracheally with one of the three H9N2 isolates at a dose of 108 EID50 virus. The control group received phosphate-buffered saline (PBS) via the same route of application. The pathogenicity was evaluated based on clinical signs and gross pathological and histopathological lesions, the viral antigen load was assessed through immunohistochemistry staining (IHC), and a semi-quantitative detection of the genetic material was conducted via a real-time PCR. Our findings confirmed the obvious respiratory tract tropism of the virus strains with variable renal tropism. In contrast to the highly pathogenic AIVs, the tested H9N2 strains did not show replication in the central nervous system. The virus presence and lesions, mainly in the respiratory tract, were predominant on dpi 5 and significantly reduced or disappeared by dpi 11. A clear difference was demonstrated among the three isolates: the A/chicken/Morocco/2021/2016 strain proved to be significantly more virulent than the Egyptian and Saudi Arabian ones, which showed no remarkable difference.
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Affiliation(s)
- Márta Bóna
- Department of Animal Hygiene, Herd Health and Mobile Clinic, University of Veterinary Medicine, István utca 2, 1078 Budapest, Hungary
| | | | - Lilla Dénes
- National Laboratory of Infectious Animal Diseases, Antimicrobial Resistance, Veterinary Public Health and Food Chain Safety, University of Veterinary Medicine Budapest, István utca 2, 1078 Budapest, Hungary;
| | - Andrea Harnos
- Department of Biostatistics, University of Veterinary Medicine, István utca 2, 1078 Budapest, Hungary; (A.H.); (B.P.)
| | - Bettina Paszerbovics
- Department of Biostatistics, University of Veterinary Medicine, István utca 2, 1078 Budapest, Hungary; (A.H.); (B.P.)
| | - Míra Mándoki
- Department of Pathology, University of Veterinary Medicine, István utca 2, 1078 Budapest, Hungary;
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Jbenyeni A, Croville G, Cazaban C, Guérin JL. Predominance of low pathogenic avian influenza virus H9N2 in the respiratory co-infections in broilers in Tunisia: a longitudinal field study, 2018-2020. Vet Res 2023; 54:88. [PMID: 37789451 PMCID: PMC10548753 DOI: 10.1186/s13567-023-01204-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2023] [Accepted: 08/07/2023] [Indexed: 10/05/2023] Open
Abstract
Respiratory diseases are a health and economic concern for poultry production worldwide. Given global economic exchanges and migratory bird flyways, respiratory viruses are likely to emerge continuously in new territories. The primary aim of this study was to investigate the major pathogens involved in respiratory disease in Tunisian broiler poultry and their epidemiology. Between 2018 and 2020, broilers farms in northeastern Tunisia were monitored, and 39 clinically diseased flocks were sampled. Samples were screened for five viral and three bacterial respiratory pathogens using a panel of real-time PCR assays. The reemergence of H9N2 low pathogenic avian influenza virus (LPAIV) in commercial poultry was reported, and the Northern and Western African GI lineage strain was typed. The infectious bronchitis virus (IBV) GI-23 lineage and the avian metapneumovirus (aMPV) subtype B also were detected for the first time in broilers in Tunisia. H9N2 LPAIV was the most detected pathogen in the flocks tested, but rarely alone, as 15 of the 16 H9N2 positive flocks were co-infected. Except for infectious laryngotracheitis virus (ILTV), all of the targeted pathogens were detected, and in 61% of the respiratory disease cases, a combination of pathogens was identified. The major combinations were H9N2 + aMPV (8/39) and H9N2 + IBV (6/39), showing the high contribution of H9N2 LPAIV to the multifactorial respiratory diseases. This field survey provided evidence of the emergence of new respiratory viruses and the complexity of respiratory disease in Tunisia. A comprehensive and continuous surveillance strategy therefore is needed to better control respiratory pathogens in Tunisia.
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Affiliation(s)
- Adam Jbenyeni
- IHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France
- Ceva Santé Animale S.A., Libourne, France
| | | | | | - Jean-Luc Guérin
- IHAP, Université de Toulouse, INRAE, ENVT, Toulouse, France.
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Pan Z, Zhu Y, Rong J, Mao K, Yang D, Zhang T, Pan J, Qiu F. A recognition strategy combining effective boron affinity technology and surface imprinting to prepare highly selective and easily recyclable polymer membrane for separation of drug molecule. J Colloid Interface Sci 2022; 624:1-13. [PMID: 35660878 DOI: 10.1016/j.jcis.2022.05.138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 05/12/2022] [Accepted: 05/22/2022] [Indexed: 10/18/2022]
Abstract
Cellulose acetate membrane (CAM) has become one of the most widely used membrane materials by virtue of stability and hydrophilicity. In this work, to achieve the aim of selective recognition and separation of drug molecule shikimic acid (SA), an effective recognition tactics was proposed by combining boron affinity technology with surface imprinting strategy based on cellulose acetate membrane with low price and biocompatibility. The supporting CAM material was prepared through the phase inversion technique by continuous adjustment of different factors including solvent type and kinds of pore-forming agents, and the optimal CAM with multistage structure and highly porosity was applied for the imprinting of SA. Then the imprinted polymer membrane (MIPs-CAM) was developed via boron affinity surface imprinting polymerization. Various methods (FT-IR, UV-vis, SEM, XPS, AFM and TGA) were used to characterize the structure, morphology, elemental composition, surface roughness and thermal property of the obtained membrane. The as-prepared MIPs-CAM showed homogeneous and abundant imprinted layer, good thermal stability. The batch adsorption results showed that the MIPs-CAM had fast adsorption kinetics, specific recognition ability, and the adsorption capacity could obtain 63.598 mg g-1, which was two times higher than that of non-imprinted membrane (NIPs-CAM). The adsorption isotherms conformed to the Langmuir isotherm and the adsorption processes were spontaneous and endothermic. Additionally, the adsorption capacity of MIPs-CAM still reached 85% of the initial result after five cycles. The experimental results revealed that the molecularly imprinted membrane possessed the advantages of high selectivity and easy recovery compared with the traditional molecular imprinted polymers for SA separation. These results indicate that boron affinity MIPs-CAM with high performance will provide a promising platform for the separation and purification of other cis-diol drug molecules from environmental resources.
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Affiliation(s)
- Zhiyuan Pan
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Yao Zhu
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Jian Rong
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Kaili Mao
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Dongya Yang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Tao Zhang
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China
| | - Jianming Pan
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China.
| | - Fengxian Qiu
- School of Chemistry and Chemical Engineering, Jiangsu University, Zhenjiang 212013, PR China.
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Spatiotemporal Dynamics, Evolutionary History and Zoonotic Potential of Moroccan H9N2 Avian Influenza Viruses from 2016 to 2021. Viruses 2022; 14:v14030509. [PMID: 35336916 PMCID: PMC8951762 DOI: 10.3390/v14030509] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 02/22/2022] [Accepted: 02/24/2022] [Indexed: 02/01/2023] Open
Abstract
The H9N2 virus continues to spread in wild birds and poultry worldwide. At the beginning of 2016, the H9N2 Avian influenza virus (AIV) was detected in Morocco for the first time; despite the implementation of vaccination strategies to control the disease, the virus has become endemic in poultry in the country. The present study was carried out to investigate the origins, zoonotic potential, as well as the impact of vaccination on the molecular evolution of Moroccan H9N2 viruses. Twenty-eight (28) H9N2 viruses collected from 2016 to 2021 in Moroccan poultry flocks were isolated and their whole genomes sequenced. Phylogenetic and evolutionary analyses showed that Moroccan H9N2 viruses belong to the G1-like lineage and are closely related to viruses isolated in Africa and the Middle East. A high similarity among all the 2016–2017 hemagglutinin sequences was observed, while the viruses identified in 2018–2019 and 2020–2021 were separated from their 2016–2017 ancestors by long branches. Mutations in the HA protein associated with antigenic drift and increased zoonotic potential were also found. The Bayesian phylogeographic analyses revealed the Middle East as being the region where the Moroccan H9N2 virus may have originated, before spreading to the other African countries. Our study is the first comprehensive analysis of the evolutionary history of the H9N2 viruses in the country, highlighting their zoonotic potential and pointing out the importance of implementing effective monitoring systems.
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Abstract
The H9N2 subtype avian influenza virus (AIV) has become endemic in poultry globally; however due to its low pathogenicity, it is not under primary surveillance and control in many countries. Recent reports of human infection caused by H9N2 AIV has increased public concern. This study investigated the genetic and antigenic characteristics of H9N2 AIV isolated from local markets in nine provinces in Southern China from 2013 to 2018. We detected an increasing annual isolation rate of H9N2 AIV. Phylogenetic analyses of hemagglutinin (HA) genes suggests that isolated strains were rooted in BJ94 lineage but have evolved into new subgroups (II and III), which derived from subgroup I. The estimated substitution rate of the subgroup III strains was 6.23 × 10−3 substitutions/site/year, which was 1.5-fold faster than that of the average H9N2 HA rate (3.95 × 10−3 substitutions/site/year). Based on the antigenic distances, subgroup II and III strains resulted in two clear antigenic clusters 2 and 3, separated from the vaccine strain F98, cluster 1. New antigenic properties of subgroup III viruses were associated with 11 amino acid changes in the HA protein, suggesting antigenic drift in H9N2 viruses. Our phylogenetic and antigenic analyses of the H9N2 strains circulating in local markets in Southern China provide new insights on the antigenic diversification of H9N2 viruses. IMPORTANCE The H9N2 low pathogenicity avian influenza (LPAI) virus has become endemic in poultry globally. In several Asian countries, vaccination against H9N2 avian influenza virus (AIV) was approved to reduce economic losses in the poultry industry. However, surveillance programs initiated after the introduction of vaccination identified the persistence of H9N2 AIV in poultry (especially in chicken in South Korea and China). Recent reports of human infection caused by H9N2 AIV has increased public concern. Surveillance of H9N2 circulating in poultry in the fields or markets was essential to update the vaccination strategies. This study investigated the genetic and antigenic characteristics of H9N2 AIVs isolated from local markets in nine provinces in Southern China from 2013 to 2018. The discovery of mutations in the hemagglutinin (HA) gene that result in antigenic changes provides a baseline reference for evolutionary studies of H9N2 viruses and vaccination strategies in poultry.
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Mellouli FE, Abouchoaib N, Zekhnini H, Khayli M, Fusaro A, Idrissi HR, Benhoussa A. Molecular Detection of Avian Influenza Virus in Wild Birds in Morocco, 2016–2019. Avian Dis 2021; 66:29-38. [DOI: 10.1637/aviandiseases-d-21-00070] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 10/22/2021] [Indexed: 11/05/2022]
Affiliation(s)
- Fatiha El Mellouli
- Biodiversity, Ecology and Genome Laboratory, Faculty of Sciences, Mohammed V University in Rabat, 4 Avenue Ibn Battouta, 10106 Rabat, Morocco
| | - Nabil Abouchoaib
- Biodiversity, Ecology and Genome Laboratory, Faculty of Sciences, Mohammed V University in Rabat, 4 Avenue Ibn Battouta, 10106 Rabat, Morocco
| | - Hasnae Zekhnini
- Immunology and Biodiversity Laboratory, Faculty of Science Ain chock, Hassan II University of Casablanca, 20100 Casablanca, Morocco
| | - Mounir Khayli
- Epidemiology and Health Surveillance Unit (SEVS), Institut Agronomique et Vétérinaire Hassan II, Rabat-Instituts, 6472 Rabat, Morocco
| | - Alice Fusaro
- Istituto Zooprofilattico Sperimentale delle Venezie, 35020 Legnaro, Italy
| | - Hamid Rguibi Idrissi
- Biodiversity, Ecology and Genome Laboratory, Faculty of Sciences, Mohammed V University in Rabat, 4 Avenue Ibn Battouta, 10106 Rabat, Morocco
| | - Abdelaziz Benhoussa
- Biodiversity, Ecology and Genome Laboratory, Faculty of Sciences, Mohammed V University in Rabat, 4 Avenue Ibn Battouta, 10106 Rabat, Morocco
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Fusade-Boyer M, Djegui F, Batawui K, Byuragaba DK, Jones JC, Wabwire-Mangeni F, Erima B, Atim G, Ukuli QA, Tugume T, Dogno K, Adjabli K, Nzuzi M, Adjin R, Jeevan T, Rubrum A, Go-Maro W, Kayali G, McKenzie P, Webby RJ, Ducatez MF. Antigenic and molecular characterization of low pathogenic avian influenza A(H9N2) viruses in sub-Saharan Africa from 2017 through 2019. Emerg Microbes Infect 2021; 10:753-761. [PMID: 33754959 PMCID: PMC8057090 DOI: 10.1080/22221751.2021.1908097] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 02/25/2021] [Accepted: 03/20/2021] [Indexed: 12/13/2022]
Abstract
Sub-Saharan Africa was historically considered an animal influenza cold spot, with only sporadic highly pathogenic H5 outbreaks detected over the last 20 years. However, in 2017, low pathogenic avian influenza A(H9N2) viruses were detected in poultry in Sub-Saharan Africa. Molecular, phylogenetic, and antigenic characterization of isolates from Benin, Togo, and Uganda showed that they belonged to the G1 lineage. Isolates from Benin and Togo clustered with viruses previously described in Western Africa, whereas viruses from Uganda were genetically distant and clustered with viruses from the Middle East. Viruses from Benin exhibited decreased cross-reactivity with those from Togo and Uganda, suggesting antigenic drift associated with reduced replication in Calu-3 cells. The viruses exhibited mammalian adaptation markers similar to those of the human strain A/Senegal/0243/2019 (H9N2). Therefore, viral genetic and antigenic surveillance in Africa is of paramount importance to detect further evolution or emergence of new zoonotic strains.
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Affiliation(s)
| | | | | | | | - Jeremy C. Jones
- Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA
| | | | - Bernard Erima
- Makerere University Walter Reed Project, Kampala, Uganda
| | - Gladys Atim
- Makerere University Walter Reed Project, Kampala, Uganda
| | | | - Titus Tugume
- Makerere University Walter Reed Project, Kampala, Uganda
| | - Koffi Dogno
- Laboratoire Central Vétérinaire de Lomé, Lomé, Togo
| | | | - Mvibudulu Nzuzi
- IHAP, UMR1225, Université de Toulouse, INRAe, ENVT, Toulouse, France
| | | | - Trushar Jeevan
- Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA
| | - Adam Rubrum
- Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA
| | | | - Ghazi Kayali
- Human Link, Hazmieh, Lebanon
- University of Texas Health Sciences Center, Houston, Texas, USA
| | - Pamela McKenzie
- Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA
| | - Richard J. Webby
- Department of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee, USA
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Chrzastek K, Leng J, Zakaria MK, Bialy D, La Ragione R, Shelton H. Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines. Anim Microbiome 2021; 3:64. [PMID: 34583770 PMCID: PMC8479891 DOI: 10.1186/s42523-021-00128-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Accepted: 09/10/2021] [Indexed: 01/12/2023] Open
Abstract
BACKGROUND A commensal microbiota regulates and is in turn regulated by viruses during host infection which can influence virus infectivity. In this study, analysis of colon microbiota population changes following a low pathogenicity avian influenza virus (AIV) of the H9N2 subtype infection of two different chicken breeds was conducted. METHODS Colon samples were taken from control and infected groups at various timepoints post infection. 16S rRNA sequencing on an Illumina MiSeq platform was performed on the samples and the data mapped to operational taxonomic units of bacterial using a QIIME based pipeline. Microbial community structure was then analysed in each sample by number of observed species and phylogenetic diversity of the population. RESULTS We found reduced microbiota alpha diversity in the acute period of AIV infection (day 2-3) in both Rhode Island Red and VALO chicken lines. From day 4 post infection a gradual increase in diversity of the colon microbiota was observed, but the diversity did not reach the same level as in uninfected chickens by day 10 post infection, suggesting that AIV infection retards the natural accumulation of colon microbiota diversity, which may further influence chicken health following recovery from infection. Beta diversity analysis indicated a bacterial species diversity difference between the chicken lines during and following acute influenza infection but at phylum and bacterial order level the colon microbiota dysbiosis was similar in the two different chicken breeds. CONCLUSION Our data suggest that H9N2 influenza A virus impacts the chicken colon microbiota in a predictable way that could be targeted via intervention to protect or mitigate disease.
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Affiliation(s)
| | - Joy Leng
- Department of Pathology and Infectious Disease, School of Veterinary Medicine, University of Surrey, Guildford, UK
| | - Mohammad Khalid Zakaria
- The Pirbright Institute, Pirbright, Woking, Surrey, UK
- University of Glasgow Centre for Virus Research, Glasgow, UK
| | - Dagmara Bialy
- The Pirbright Institute, Pirbright, Woking, Surrey, UK
| | - Roberto La Ragione
- Department of Pathology and Infectious Disease, School of Veterinary Medicine, University of Surrey, Guildford, UK
| | - Holly Shelton
- The Pirbright Institute, Pirbright, Woking, Surrey, UK.
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Zhu Y, Pan Z, Rong J, Mao K, Yang D, Zhang T, Xu J, Qiu F, Pan J. Boronate affinity surface imprinted polymers supported on dendritic fibrous silica for enhanced selective separation of shikimic acid via covalent binding. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116408] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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13
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Barberis A, Boudaoud A, Gorrill A, Loupias J, Ghram A, Lachheb J, Alloui N, Ducatez MF. Full-length genome sequences of the first H9N2 avian influenza viruses isolated in the Northeast of Algeria. Virol J 2020; 17:108. [PMID: 32680533 PMCID: PMC7366561 DOI: 10.1186/s12985-020-01377-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 06/30/2020] [Indexed: 11/30/2022] Open
Abstract
Background H9N2 avian influenza viruses (AIV) has a worldwide geographic distribution and affects poultry of different types of production. H9N2 AIV was first reported in the Northeast of Algeria in April 2017, following an outbreak associated with high mortality, in broiler flocks. In the present study, we report full-length genome sequences of AIV H9N2, and the detailed phylogeny and molecular genetic analyses. Methods Ten AIV H9N2 strains, collected in broiler flocks, were amplified in 9-day-old embryonated specific pathogen free (SPF) chicken eggs. Their full-length genomes were successfully sequenced and phylogenetic and molecular characterizations were conducted. Results Phylogenetic analysis showed that the isolates were monophyletic, grouped within the G-1 lineage and were very close to Moroccan and Algerian strains identified in 2016 and 2017, respectively. The low pathogenicity of the strains was confirmed by the sequence motif (335RSSR/GLF341) at the hemagglutinin (HA) cleavage site. An exclusive substitution (T197A) that had not been previously reported for H9N2 viruses; but, conserved in some pandemic H1N1 viruses, was observed. When compared to the G1-like H9N2 prototype, the studied strains showed one less glycosylation site in HA, but 2–3 additional ones in the stalk of the neuraminidase (NA). The HA protein harbored the substitution 234 L, suggesting binding preference to human-like receptors. The NA protein harbored S372A and R403W substitutions, previously detected in H9N2 from Asia and the Middle East, and especially in H2N2 and H3N2 strains that caused human pandemics. Different molecular markers associated with virulence and mammalian infections have been detected in the viral internal proteins. The matrix M2 protein possessed the S31N substitution associated with drug resistance. The non-structural 1 (NS1) protein showed the “GSEV” PDZ ligand (PL) C-terminal motif and no 80–84 deletion. Conclusion Characterized Algerian AIV isolates showed mutations that suggest increased zoonotic potential. Additional studies in animal models are required to investigate the pathogenicity of these H9N2 AIV strains. Monitoring their evolution in both migratory and domestic birds is crucial to prevent transmission to humans. Implementation of adequate biosecurity measures that limit the introduction and the propagation of AIV H9N2 in Algerian poultry farm is crucial.
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Affiliation(s)
- Abdelheq Barberis
- Centre de Recherche en Biotechnologie, Nouvelle Ville Ali Mendjeli, El Khroub, Algeria. .,LESPA, Département vétérinaire, ISVSA, Université de Batna, Batna, Algeria.
| | - Amine Boudaoud
- LESPA, Département vétérinaire, ISVSA, Université de Batna, Batna, Algeria
| | - Angelina Gorrill
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31076, Toulouse cedex, France
| | - Josianne Loupias
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31076, Toulouse cedex, France
| | - Abdeljelil Ghram
- Laboratoire d'Epidémiologie et de Microbiologie Vétérinaire, Institut Pasteur de Tunis, Université Tunis El Manar, Tunis, Tunisia
| | - Jihene Lachheb
- Laboratoire d'Epidémiologie et de Microbiologie Vétérinaire, Institut Pasteur de Tunis, Université Tunis El Manar, Tunis, Tunisia
| | - Nadir Alloui
- LESPA, Département vétérinaire, ISVSA, Université de Batna, Batna, Algeria
| | - Mariette F Ducatez
- IHAP, Université de Toulouse, INRAE, ENVT, 23 Chemin des Capelles, 31076, Toulouse cedex, France.
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14
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Systematic Review of Important Viral Diseases in Africa in Light of the 'One Health' Concept. Pathogens 2020; 9:pathogens9040301. [PMID: 32325980 PMCID: PMC7238228 DOI: 10.3390/pathogens9040301] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 04/03/2020] [Accepted: 04/07/2020] [Indexed: 12/19/2022] Open
Abstract
Emerging and re-emerging viral diseases are of great public health concern. The recent emergence of Severe Acute Respiratory Syndrome (SARS) related coronavirus (SARS-CoV-2) in December 2019 in China, which causes COVID-19 disease in humans, and its current spread to several countries, leading to the first pandemic in history to be caused by a coronavirus, highlights the significance of zoonotic viral diseases. Rift Valley fever, rabies, West Nile, chikungunya, dengue, yellow fever, Crimean-Congo hemorrhagic fever, Ebola, and influenza viruses among many other viruses have been reported from different African countries. The paucity of information, lack of knowledge, limited resources, and climate change, coupled with cultural traditions make the African continent a hotspot for vector-borne and zoonotic viral diseases, which may spread globally. Currently, there is no information available on the status of virus diseases in Africa. This systematic review highlights the available information about viral diseases, including zoonotic and vector-borne diseases, reported in Africa. The findings will help us understand the trend of emerging and re-emerging virus diseases within the African continent. The findings recommend active surveillance of viral diseases and strict implementation of One Health measures in Africa to improve human public health and reduce the possibility of potential pandemics due to zoonotic viruses.
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15
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Jeevan T, Darnell D, Gradi EA, Benali Y, Kara R, Guetarni D, Rubrum A, Seiler PJ, Crumpton JC, Webby RJ, Derrar F. A(H9N2) influenza viruses associated with chicken mortality in outbreaks in Algeria 2017. Influenza Other Respir Viruses 2019; 13:622-626. [PMID: 31478603 PMCID: PMC6800309 DOI: 10.1111/irv.12675] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Revised: 07/03/2019] [Accepted: 07/04/2019] [Indexed: 12/02/2022] Open
Abstract
In late 2017, increased mortality was detected in chicken farms in Algeria undergoing A(H9N2) influenza outbreaks. Analysis of viruses isolated from affected farms showed that they were monophyletic, were of the G1 hemagglutinin (HA) lineage, and were antigenically and genetically similar to viruses detected contemporaneously in other countries in Northern Africa and the Middle East. The virus was able to spread via contact transmission between ferrets but did not cause disease in intravenously inoculated chickens.
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Affiliation(s)
- Trushar Jeevan
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - Daniel Darnell
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - El Alia Gradi
- National Influenza CentreViral Respiratory LaboratoryAlgiersAlgeria
| | - Yasmine Benali
- Laboratory of Veterinary Pathology and CytologyInstitut Pasteur of AlgeriaAlgiersAlgeria
| | | | | | - Adam Rubrum
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - Patrick J Seiler
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - Jeri Carol Crumpton
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - Richard John Webby
- Department of Infectious DiseasesSt Jude Children's Research HospitalMemphisTNUSA
| | - Fawzi Derrar
- National Influenza CentreViral Respiratory LaboratoryAlgiersAlgeria
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