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Tavakoli F, Hajiboland R, Bosnic D, Bosnic P, Nikolic M, Tolra R, Poschenrieder C. Signaling function of NH 4+ in the activation of Fe-deficiency response in cucumber (Cucumis sativus L.). PLANTA 2024; 260:53. [PMID: 39009858 DOI: 10.1007/s00425-024-04480-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 07/03/2024] [Indexed: 07/17/2024]
Abstract
MAIN CONCLUSION NH4+ is necessary for full functionality of reduction-based Fe deficiency response in plants. Nitrogen (N) is present in soil mainly as nitrate (NO3-) or ammonium (NH4+). Although the significance of a balanced supply of NO3- and NH4+ for optimal growth has been generally accepted, its importance for iron (Fe) acquisition has not been sufficiently investigated. In this work, hydroponically grown cucumber (Cucumis sativus L. cv. Maximus) plants were supplied with NO3- as the sole N source under -Fe conditions. Upon the appearance of chlorosis, plants were supplemented with 2 mM NH4Cl by roots or leaves. The NH4+ treatment increased leaf SPAD and the HCl-extractable Fe concentration while decreased root apoplastic Fe. A concomitant increase in the root concentration of nitric oxide and activity of FRO and its abolishment by an ethylene action inhibitor, indicated activation of the components of Strategy I in NH4+-treated plants. Ammonium-pretreated plants showed higher utilization capacity of sparingly soluble Fe(OH)3 and higher root release of H+, phenolics, and organic acids. The expression of the master regulator of Fe deficiency response (FIT) and its downstream genes (AHA1, FRO2, and IRT1) along with EIN3 and STOP1 was increased by NH4+ application. Temporal analyses and the employment of a split-root system enabled us to suggest that a permanent presence of NH4+ at concentrations lower than 2 mM is adequate to produce an unknown signal and causes a sustained upregulation of Fe deficiency-related genes, thus augmenting the Fe-acquisition machinery. The results indicate that NH4+ appears to be a widespread and previously underappreciated component of plant reduction-based Fe deficiency response.
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Affiliation(s)
- Fatemeh Tavakoli
- Department of Plant, Cell and Molecular Biology, University of Tabriz, Tabriz, Iran
| | - Roghieh Hajiboland
- Department of Plant, Cell and Molecular Biology, University of Tabriz, Tabriz, Iran.
| | - Dragana Bosnic
- Institute of Molecular Genetics and Genetic Engineering, University of Belgrade, Belgrade, Serbia
| | - Predrag Bosnic
- Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia
| | - Miroslav Nikolic
- Institute for Multidisciplinary Research, University of Belgrade, Belgrade, Serbia
| | - Roser Tolra
- Plant Physiology Laboratory, Bioscience Faculty, Autonomous University of Barcelona, Barcelona, Spain
| | - Charlotte Poschenrieder
- Plant Physiology Laboratory, Bioscience Faculty, Autonomous University of Barcelona, Barcelona, Spain
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Wang X, Zhou Y, Chai X, Foster TM, Deng CH, Wu T, Zhang X, Han Z, Wang Y. miR164-MhNAC1 regulates apple root nitrogen uptake under low nitrogen stress. THE NEW PHYTOLOGIST 2024; 242:1218-1237. [PMID: 38481030 DOI: 10.1111/nph.19663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 02/22/2024] [Indexed: 04/12/2024]
Abstract
Nitrogen is an essential nutrient for plant growth and serves as a signaling molecule to regulate gene expression inducing physiological, growth and developmental responses. An excess or deficiency of nitrogen may have adverse effects on plants. Studying nitrogen uptake will help us understand the molecular mechanisms of utilization for targeted molecular breeding. Here, we identified and functionally validated an NAC (NAM-ATAF1/2-CUC2) transcription factor based on the transcriptomes of two apple rootstocks with different nitrogen uptake efficiency. NAC1, a target gene of miR164, directly regulates the expression of the high-affinity nitrate transporter (MhNRT2.4) and citric acid transporter (MhMATE), affecting root nitrogen uptake. To examine the role of MhNAC1 in nitrogen uptake, we produced transgenic lines that overexpressed or silenced MhNAC1. Silencing MhNAC1 promoted nitrogen uptake and citric acid secretion in roots, and enhanced plant tolerance to low nitrogen conditions, while overexpression of MhNAC1 or silencing miR164 had the opposite effect. This study not only revealed the role of the miR164-MhNAC1 module in nitrogen uptake in apple rootstocks but also confirmed that citric acid secretion in roots affected nitrogen uptake, which provides a research basis for efficient nitrogen utilization and molecular breeding in apple.
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Affiliation(s)
- Xiaona Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Yan Zhou
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Xiaofen Chai
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Toshi M Foster
- The New Zealand Institute for Plant and Food Research Limited (Plant & Food Research), Motueka, 7198, New Zealand
| | - Cecilia H Deng
- The New Zealand Institute for Plant and Food Research Limited (Plant & Food Research), Auckland, 1025, New Zealand
| | - Ting Wu
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Xinzhong Zhang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Zhenhai Han
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Yi Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
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Xu T, Wang Z, Wang Z, Guo M, Wang X, He X, Wang J, Rahman SU, Bourhia M, Alsahli AA, Zhang Y. Effects of nitrate- and ammonium- nitrogen on anatomical and physiological responses of Catalpa bungei under full and partial root-zone drought. BMC PLANT BIOLOGY 2024; 24:217. [PMID: 38532319 DOI: 10.1186/s12870-024-04874-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2023] [Accepted: 03/01/2024] [Indexed: 03/28/2024]
Abstract
Catalpa bungei is a precious timber species distributed in North China where drought often occurs. To clarify adaptive responses of C. bungei to partial- and full- root-zone drought under the influence of nitrogen forms, a two-factor experiment was conducted in which well-watered (WW), partial root-zone drought in horizontal direction (H-PRD) and in vertical direction (V-PRD), and full root-zone drought (FRD) were combined with nitrate-nitrogen (NN) and ammonium-nitrogen (AN) treatments. C. bungei responded to FRD by sharply closing stomata, decreasing gas exchange rate and increasing leaf instantaneous water use efficiency (WUEi). Under FRD condition, the growth of seedlings was severely inhibited and the effect of N forms was covered up by the drastic drought effect. In comparison, stomata conductance and gas exchanges were moderately inhibited by PRDs. WUEi in V-PRD treatment was superior to H-PRD due to the active stomata regulation resulting from a higher ABA level and active transcription of genes in abscisic acid (ABA) signaling pathway under V-PRD. Under both PRDs and FRD, nitrate benefited antioxidant defense, stomata regulation and leaf WUEi. Under V-PRD, WUEi in nitrate treatment was superior to that in ammonium treatment due to active stomata regulation by signaling network of nitric oxide (NO), Ca2+ and ABA. Under FRD, WUEi was higher in nitrate treatment due to the favoring photosynthetic efficiency resulting from active NO signal and antioxidant defense. The interactive effect of water and N forms was significant on wood xylem development. Superoxide dismutase (SOD) and catalase (CAT) largely contributes to stress tolerance and xylem development.
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Affiliation(s)
- Ting Xu
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Zhiyong Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Ziye Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Mengfan Guo
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Xintong Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Xuelian He
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Junhui Wang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, 100091, China.
| | - Siddiq Ur Rahman
- Department of Computer Science and Bioinformatics, Khushal Khan Khattak University, Karak, Khyber Pakhtunkhwa, 27200, Pakistan
| | - Mohammed Bourhia
- Laboratory of Biotechnology and Natural Resources Valorization , Faculty of Sciences, Ibn Zohr University, Agadir, 80000, Morocco.
| | - Abdulaziz Abdullah Alsahli
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Yi Zhang
- State Key Laboratory of Crop Stress Biology in Arid Areas, Northwest A&F University, Yangling, Shaanxi, 712100, China.
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Li Q, Song HL, Zhou T, Pei MN, Wang B, Yan SX, Liu YQ, Wu PJ, Hua YP. Differential Morpho-Physiological, Ionomic, and Phytohormone Profiles, and Genome-Wide Expression Profiling Involving the Tolerance of Allohexaploid Wheat ( Triticum aestivum L.) to Nitrogen Limitation. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:3814-3831. [PMID: 38329036 DOI: 10.1021/acs.jafc.3c08626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/09/2024]
Abstract
Common wheat (Triticum aestivum L.) is a global staple food, while nitrogen (N) limitation severely hinders plant growth, seed yield, and grain quality of wheat. Genetic variations in the responses to low N stresses among allohexaploid wheat (AABBDD, 2n = 6x = 42) genotypes emphasize the complicated regulatory mechanisms underlying low N tolerance and N use efficiency (NUE). In this study, hydroponic culture, inductively coupled plasma mass spectrometry, noninvasive microtest, high-performance liquid chromatography, RNA-seq, and bioinformatics were used to determine the differential growth performance, ionome and phytohormone profiles, and genome-wide expression profiling of wheat plants grown under high N and low N conditions. Transcriptional profiling of NPFs, NRT2s, CLCs, SLACs/SLAHs, AAPs, UPSs, NIAs, and GSs characterized the core members, such as TaNPF6.3-6D, TaNRT2.3-3D, TaNIA1-6B, TaGLN1;2-4B, TaAAP14-5A/5D, and TaUPS2-5A, involved in the efficient transport and assimilation of nitrate and organic N nutrients. The low-N-sensitivity wheat cultivar XM26 showed obvious leaf chlorosis and accumulated higher levels of ABA, JA, and SA than the low-N-tolerant ZM578 under N limitation. The TaMYB59-3D-TaNPF7.3/NRT1.5-6D module-mediated shoot-to-root translocation and leaf remobilization of nitrate was proposed as an important pathway regulating the differential responses between ZM578 and XM26 to low N. This study provides some elite candidate genes for the selection and breeding of wheat germplasms with low N tolerance and high NUE.
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Affiliation(s)
- Qiong Li
- Department of Brewing Engineering, Moutai Institute, Renhuai 564507, Guizhou, China
| | - Hai-Li Song
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China
| | - Ting Zhou
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China
| | - Min-Nan Pei
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China
| | - Bing Wang
- Department of Brewing Engineering, Moutai Institute, Renhuai 564507, Guizhou, China
| | - Song-Xian Yan
- Department of Resources and Environment, Moutai Institute, Renhuai 564507, Guizhou, China
| | - Yun-Qi Liu
- Zhongguancun Xuyue Non-invasive Micro-test Technology Industrial Alliance, Beijing 10080, China
| | - Peng-Jia Wu
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China
| | - Ying-Peng Hua
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China
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5
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Li ZG, Lu XQ, Chen J. Gasotransmitter ammonia accelerates seed germination, seedling growth, and thermotolerance acquirement in maize. PLANT SIGNALING & BEHAVIOR 2023; 18:2163338. [PMID: 36682345 PMCID: PMC9869984 DOI: 10.1080/15592324.2022.2163338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/16/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
Abstract
Ammonia (NH3), as an intermediate product of nitrogen metabolism, is recognized as a novel gasotransmitter (namely gaseous signaling molecule), its signaling role being revealed in plants. NH3 exists in two different chemical forms, namely the weak base (free molecule: NH3) and the weak acid (ammonium: NH4+), which are generally in equilibrium with each other in plants. However, the effect of NH3 on seed germination, seedling growth, and thermotolerance acquirement in maize remains unclear. Here, maize seeds were imbibed in the different concentrations of NH3·H2O (NH3 donor), and then germinated and calculated seed germination rate at the various time points. Also, the 60-h-old seedlings were irrigated in the different concentrations of NH3·H2O, and then subjected to heat stress and counted survival rate. The data implied that the appropriate concentrations (6, 9, and 12 mM) of NH3·H2O accelerated seed germination as well as increased seedling height and root length compared with the control without NH3 treatment. Also, the suitable concentrations (2 and 4 mM) of NH3·H2O improved tissue vitality, relieved an increase in malondialdehyde content, and enhanced survival rate of maize seedlings under heat stress compared with the control. These results firstly suggest that NH3 could accelerate seed germination, seedling growth, and thermotolerance acquirement in maize.
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Affiliation(s)
- Zhong-Guang Li
- School of Life Sciences, Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, P.R. China
| | - Xiao-Qiong Lu
- School of Life Sciences, Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, P.R. China
| | - Ji Chen
- School of Life Sciences, Engineering Research Center of Sustainable Development and Utilization of Biomass Energy, Ministry of Education, Key Laboratory of Biomass Energy and Environmental Biotechnology, Yunnan Normal University, Kunming, P.R. China
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6
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Steensma P, Eisenhut M, Colinas M, Rosado-Souza L, Fernie AR, Weber APM, Fitzpatrick TB. PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. PLANT PHYSIOLOGY 2023; 193:1433-1455. [PMID: 37453131 PMCID: PMC10517258 DOI: 10.1093/plphys/kiad411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 06/06/2023] [Accepted: 06/22/2023] [Indexed: 07/18/2023]
Abstract
The identification of factors that regulate C/N utilization in plants can make a substantial contribution to optimization of plant health. Here, we explored the contribution of pyridox(am)ine 5'-phosphate oxidase3 (PDX3), which regulates vitamin B6 homeostasis, in Arabidopsis (Arabidopsis thaliana). Firstly, N fertilization regimes showed that ammonium application rescues the leaf morphological phenotype of pdx3 mutant lines but masks the metabolite perturbance resulting from impairment in utilizing soil nitrate as a source of N. Without fertilization, pdx3 lines suffered a C/N imbalance and accumulated nitrogenous compounds. Surprisingly, exploration of photorespiration as a source of endogenous N driving this metabolic imbalance, by incubation under high CO2, further exacerbated the pdx3 growth phenotype. Interestingly, the amino acid serine, critical for growth and N management, alleviated the growth phenotype of pdx3 plants under high CO2, likely due to the requirement of pyridoxal 5'-phosphate for the phosphorylated pathway of serine biosynthesis under this condition. Triggering of thermomorphogenesis by growth of plants at 28 °C (instead of 22 °C) did not appear to require PDX3 function, and we observed that the consequent drive toward C metabolism counters the C/N imbalance in pdx3. Further, pdx3 lines suffered a salicylic acid-induced defense response, probing of which unraveled that it is a protective strategy mediated by nonexpressor of pathogenesis related1 (NPR1) and improves fitness. Overall, the study demonstrates the importance of vitamin B6 homeostasis as managed by the salvage pathway enzyme PDX3 to growth in diverse environments with varying nutrient availability and insight into how plants reprogram their metabolism under such conditions.
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Affiliation(s)
- Priscille Steensma
- Department of Plant Sciences, University of Geneva, Geneva 1211, Switzerland
| | - Marion Eisenhut
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Science, Heinrich-Heine-University, Düsseldorf 40225, Germany
| | - Maite Colinas
- Department of Plant Sciences, University of Geneva, Geneva 1211, Switzerland
| | - Laise Rosado-Souza
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm 14476, Germany
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm 14476, Germany
| | - Andreas P M Weber
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Science, Heinrich-Heine-University, Düsseldorf 40225, Germany
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Kharwar S, Mishra AK. Nitrogen and Redox Metabolism in Cyanobacterium Anabaena sp. PCC 7120 Exposed to Different Sulfate Regimes. Curr Microbiol 2023; 80:265. [PMID: 37393301 DOI: 10.1007/s00284-023-03374-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 06/13/2023] [Indexed: 07/03/2023]
Abstract
Sulfur is an important key nutrient required for the growth and development of cyanobacteria. Several reports showed the effect of sulfate limitation in unicellular and filamentous cyanobacteria, but such studies have not yet been reported in heterocytous cyanobacteria to ascribe the mechanisms of nitrogen and thiol metabolisms. Thus, the present work was carried out to appraise the impacts of sulfate limitation on nitrogen and thiol metabolisms in Anabaena sp. PCC 7120 by analyzing the contents as well as enzymes of nitrogen and thiol metabolisms. Cells of Anabaena sp. PCC 7120 were exposed to different regimes of sulfate, i.e., 300, 30, 3, and 0 µM. Application of reduced concentration of sulfate showed negative impact on the cyanobacterium. Sulfate-limiting conditions reduces nitrogen-containing compounds in the cells of Anabaena. Additionally, reduced activities of nitrogen metabolic enzymes represented the role of sulfate in nitrogen metabolism. However, decreased activities of thiol metabolic enzymes indicated that sulfate-limited cyanobacterial cells have lower amount of glutathione and total thiol contents. Reduced accumulation of thiol components in the stressed cells indicated that sulfate-limited cells have lower ability to withstand stressful condition. Hence, Anabaena displays differential response to different concentrations of sulfate, and thus, stipulated that sulfur plays an important role in nitrogen and thiol metabolisms. To the best of our knowledge, this is the first report demonstrating the impact of sulfate stress on nitrogen and redox metabolisms in heterocytous cyanobacteria. This preliminary study provides a baseline idea that may help improve the production of paddy.
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Affiliation(s)
- Surbhi Kharwar
- Laboratory of Microbial Genetics, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India
- Department of Botany, University of Lucknow, Lucknow, 226007, India
| | - Arun Kumar Mishra
- Laboratory of Microbial Genetics, Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, 221005, India.
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Yan W, Qin J, Jian Y, Liu J, Bian C, Jin L, Li G. Analysis of Potato Physiological and Molecular Adaptation in Response to Different Water and Nitrogen Combined Regimes. PLANTS (BASEL, SWITZERLAND) 2023; 12:1671. [PMID: 37111894 PMCID: PMC10145361 DOI: 10.3390/plants12081671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Revised: 03/24/2023] [Accepted: 04/03/2023] [Indexed: 06/19/2023]
Abstract
Water and nitrogen are essential for potato growth and development. We aim to understand how potato adapts to changes in soil water and nitrogen content. Potato plant adaptations to changes in soil moisture and nitrogen levels were analyzed at the physiological and transcriptomic levels in four treatment groups: adequate nitrogen under drought, adequate nitrogen under sufficient irrigation, limited nitrogen under drought, and limited nitrogen under sufficient irrigation. Many light-capture pigment complex genes and oxygen release complex genes were differentially expressed in leaves when nitrogen levels were increased under drought conditions, and several genes encoding rate-limiting enzymes in the Calvin-Benson-Bassham cycle were up-regulated; furthermore, leaf stomatal conductance decreased, whereas the saturated vapor pressure difference and relative chlorophyll content in the chloroplasts increased. StSP6A, a key gene in potato tuber formation, was down-regulated in response to increased nitrogen application, and the stolon growth time was prolonged. Genes related to root nitrogen metabolism were highly expressed, and protein content in the tuber increased. Weighted gene co-expression network analysis (WGCNA) revealed 32 gene expression modules that responded to changes in water and nitrogen levels. A total of 34 key candidate genes were identified, and a preliminary molecular model of potato responses to alterations in soil water and nitrogen content was constructed.
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Shi J, Xun M, Song J, Li J, Zhang W, Yang H. Multi-walled carbon nanotubes promote the accumulation, distribution, and assimilation of 15N-KNO 3 in Malus hupehensis by entering the roots. FRONTIERS IN PLANT SCIENCE 2023; 14:1131978. [PMID: 36968357 PMCID: PMC10033859 DOI: 10.3389/fpls.2023.1131978] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
INTRODUCTION Multi-walled nanotubes (MWCNTs) consist of multiple rolled layers of graphene. Nitrogen plays an important role in apple growth. The effect of MWCNTs on nitrogen utilization in apple needs to be further investigated. METHODS In this study, the woody plant Malus hupehensis seedlings were used as plant materials, the distribution of MWCNTs in the roots was observed, and the effects of MWCNTs on the accumulation, distribution, and assimilation of nitrate by the seedlings were explored. RESULTS The results showed that MWCNTs could penetrate the roots of Malus hupehensis seedlings, and the 50, 100, and 200 µg·mL-1 MWCNTs significantly promoted the root growth of seedlings, increased root number, root activity, fresh weight, and nitrate content of seedlings, and also increased nitrate reductase activity, free amino acid, and soluble protein content of roots and leaves. 15N tracer experiments indicated that MWCNTs decreased the distribution ratio of 15N-KNO3 in Malus hupehensis roots but increased its distribution ratio in stems and leaves. MWCNTs improved the utilization ratio of 15N-KNO3 in Malus hupehensis seedlings, with the values being increased by 16.19%, 53.04%, and 86.44% following the 50, 100, and 200 µg·mL-1 MWCNTs, respectively. The RT-qPCR analysis showed that MWCNTs significantly affected the expression of genes (MhNRTs) related to nitrate uptake and transport in roots and leaves, and MhNRT1.4, MhNRT1.7, MhNRT1.8, MhNRT2.1, MhNRT2.5, and MhNRT2.7 were notably up-regulated in response to 200 µg·mL-1 MWCNTs. Raman analysis and transmission electron microscopy images indicated that MWCNTs could enter the root tissue of Malus hupehensis and were distributed between the cell wall and cytoplasmic membrane. Pearson correlation analysis showed that root tip number, root fractal dimension, and root activity were the main factors affecting root uptake and assimilation of nitrate. CONCLUSIONS These findings suggest that MWCNTs promoted root growth by entering the root, stimulated the expression of MhNRTs, and increased NR activity, thereby enhancing the uptake, distribution, and assimilation of nitrate by root, and ultimately improved the utilization of 15N-KNO3 by Malus hupehensis seedlings.
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Affiliation(s)
| | | | | | | | - Weiwei Zhang
- *Correspondence: Hongqiang Yang, ; Weiwei Zhang,
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10
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Wang X, Chai X, Gao B, Deng C, Günther CS, Wu T, Zhang X, Xu X, Han Z, Wang Y. Multi-omics analysis reveals the mechanism of bHLH130 responding to low-nitrogen stress of apple rootstock. PLANT PHYSIOLOGY 2023; 191:1305-1323. [PMID: 36417197 PMCID: PMC9922409 DOI: 10.1093/plphys/kiac519] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 11/17/2022] [Indexed: 06/16/2023]
Abstract
Nitrogen is critical for plant growth and development. With the increase of nitrogen fertilizer application, nitrogen use efficiency decreases, resulting in wasted resources. In apple (Malus domestica) rootstocks, the potential molecular mechanism for improving nitrogen uptake efficiency to alleviate low-nitrogen stress remains unclear. We utilized multi-omics approaches to investigate the mechanism of nitrogen uptake in two apple rootstocks with different responses to nitrogen stress, Malus hupehensis and Malus sieversii. Under low-nitrogen stress, Malus sieversii showed higher efficiency in nitrogen uptake. Multi-omics analysis revealed substantial differences in the expression of genes involved in flavonoid and lignin synthesis pathways between the two materials, which were related to the corresponding metabolites. We discovered that basic helix-loop-helix 130 (bHLH130) transcription factor was highly negatively associated with the flavonoid biosynthetic pathway. bHLH130 may directly bind to the chalcone synthase gene (CHS) promoter and inhibit its expression. Overexpressing CHS increased flavonoid accumulation and nitrogen uptake. Inhibiting bHLH130 increased flavonoid biosynthesis while decreasing lignin accumulation, thus improving nitrogen uptake efficiency. These findings revealed the molecular mechanism by which bHLH130 regulates flavonoid and lignin biosyntheses in apple rootstocks under low-nitrogen stress.
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Affiliation(s)
- Xiaona Wang
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Xiaofen Chai
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Beibei Gao
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Cecilia Deng
- The New Zealand Institute for Plant and Food Research Ltd, 120 Mt Albert Road, 1025 Auckland, New Zealand
| | - Catrin S Günther
- The New Zealand Institute for Plant and Food Research Ltd, Ruakura Research Campus, Bisley Road, 3216 Hamilton, New Zealand
| | - Ting Wu
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Xinzhong Zhang
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Xuefeng Xu
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Zhenhai Han
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
| | - Yi Wang
- College of Horticulture, China Agricultural University, Beijing 100193, P.R. China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), the Ministry of Agriculture and Rural Affairs, Beijing 100193, P.R. China
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11
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Kishchenko O, Stepanenko A, Straub T, Zhou Y, Neuhäuser B, Borisjuk N. Ammonium Uptake, Mediated by Ammonium Transporters, Mitigates Manganese Toxicity in Duckweed, Spirodela polyrhiza. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12010208. [PMID: 36616338 PMCID: PMC9824425 DOI: 10.3390/plants12010208] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/27/2022] [Accepted: 12/30/2022] [Indexed: 06/12/2023]
Abstract
Nitrogen is an essential nutrient that affects all aspects of the growth, development and metabolic responses of plants. Here we investigated the influence of the two major sources of inorganic nitrogen, nitrate and ammonium, on the toxicity caused by excess of Mn in great duckweed, Spirodela polyrhiza. The revealed alleviating effect of ammonium on Mn-mediated toxicity, was complemented by detailed molecular, biochemical and evolutionary characterization of the species ammonium transporters (AMTs). Four genes encoding AMTs in S. polyrhiza, were classified as SpAMT1;1, SpAMT1;2, SpAMT1;3 and SpAMT2. Functional testing of the expressed proteins in yeast and Xenopus oocytes clearly demonstrated activity of SpAMT1;1 and SpAMT1;3 in transporting ammonium. Transcripts of all SpAMT genes were detected in duckweed fronds grown in cultivation medium, containing a physiological or 50-fold elevated concentration of Mn at the background of nitrogen or a mixture of nitrate and ammonium. Each gene demonstrated an individual expression pattern, revealed by RT-qPCR. Revealing the mitigating effect of ammonium uptake on manganese toxicity in aquatic duckweed S. polyrhiza, the study presents a comprehensive analysis of the transporters involved in the uptake of ammonium, shedding a new light on the interactions between the mechanisms of heavy metal toxicity and the regulation of the plant nitrogen metabolism.
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Affiliation(s)
- Olena Kishchenko
- Jiangsu Key Laboratory for Eco-Agricultural Biotechnology around Hongze Lake, Jiangsu Collaborative Innovation Centre of Regional Modern Agriculture and Environmental Protection, Huaiyin Normal University, West Changjiang Road 111, Huai’an 223000, China
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany
- Institute of Cell Biology and Genetic Engineering, National Academy of Science of Ukraine, Acad. Zabolotnogo Str. 148, 03143 Kyiv, Ukraine
| | - Anton Stepanenko
- Jiangsu Key Laboratory for Eco-Agricultural Biotechnology around Hongze Lake, Jiangsu Collaborative Innovation Centre of Regional Modern Agriculture and Environmental Protection, Huaiyin Normal University, West Changjiang Road 111, Huai’an 223000, China
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany
- Institute of Cell Biology and Genetic Engineering, National Academy of Science of Ukraine, Acad. Zabolotnogo Str. 148, 03143 Kyiv, Ukraine
| | - Tatsiana Straub
- Institute of Crop Science, Nutritional Crop Physiology, University of Hohenheim, 70593 Stuttgart, Germany
| | - Yuzhen Zhou
- Jiangsu Key Laboratory for Eco-Agricultural Biotechnology around Hongze Lake, Jiangsu Collaborative Innovation Centre of Regional Modern Agriculture and Environmental Protection, Huaiyin Normal University, West Changjiang Road 111, Huai’an 223000, China
| | - Benjamin Neuhäuser
- Institute of Crop Science, Nutritional Crop Physiology, University of Hohenheim, 70593 Stuttgart, Germany
| | - Nikolai Borisjuk
- Jiangsu Key Laboratory for Eco-Agricultural Biotechnology around Hongze Lake, Jiangsu Collaborative Innovation Centre of Regional Modern Agriculture and Environmental Protection, Huaiyin Normal University, West Changjiang Road 111, Huai’an 223000, China
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12
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Ortigosa F, Lobato-Fernández C, Pérez-Claros JA, Cantón FR, Ávila C, Cánovas FM, Cañas RA. Epitranscriptome changes triggered by ammonium nutrition regulate the proteome response of maritime pine roots. FRONTIERS IN PLANT SCIENCE 2022; 13:1102044. [PMID: 36618661 PMCID: PMC9815506 DOI: 10.3389/fpls.2022.1102044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 12/08/2022] [Indexed: 06/17/2023]
Abstract
Epitranscriptome constitutes a gene expression checkpoint in all living organisms. Nitrogen is an essential element for plant growth and development that influences gene expression at different levels such as epigenome, transcriptome, proteome, and metabolome. Therefore, our hypothesis is that changes in the epitranscriptome may regulate nitrogen metabolism. In this study, epitranscriptomic modifications caused by ammonium nutrition were monitored in maritime pine roots using Oxford Nanopore Technology. Transcriptomic responses mainly affected transcripts involved in nitrogen and carbon metabolism, defense, hormone synthesis/signaling, and translation. Global detection of epitranscriptomic marks was performed to evaluate this posttranscriptional mechanism in un/treated seedlings. Increased N6-methyladenosine (m6A) deposition in the 3'-UTR was observed in response to ammonium, which seems to be correlated with poly(A) lengths and changes in the relative abundance of the corresponding proteins. The results showed that m6A deposition and its dynamics seem to be important regulators of translation under ammonium nutrition. These findings suggest that protein translation is finely regulated through epitranscriptomic marks likely by changes in mRNA poly(A) length, transcript abundance and ribosome protein composition. An integration of multiomics data suggests that the epitranscriptome modulates responses to nutritional, developmental and environmental changes through buffering, filtering, and focusing the final products of gene expression.
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Affiliation(s)
- Francisco Ortigosa
- Grupo de Biología Molecular y Biotecnología de Plantas, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Málaga, Spain
| | - César Lobato-Fernández
- Grupo de Biología Molecular y Biotecnología de Plantas, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Málaga, Spain
| | | | | | - Concepción Ávila
- Grupo de Biología Molecular y Biotecnología de Plantas, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Málaga, Spain
| | - Francisco M. Cánovas
- Grupo de Biología Molecular y Biotecnología de Plantas, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Málaga, Spain
| | - Rafael A. Cañas
- Integrative Molecular Biology Lab, Universidad de Málaga, Málaga, Spain
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13
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Fu YF, Yang XY, Zhang ZW, Yuan S. Synergistic effects of nitrogen metabolites on auxin regulating plant growth and development. FRONTIERS IN PLANT SCIENCE 2022; 13:1098787. [PMID: 36605959 PMCID: PMC9807920 DOI: 10.3389/fpls.2022.1098787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 12/07/2022] [Indexed: 06/17/2023]
Abstract
Nitrogen is one of the important nutrients required for plant growth and development. There is increasing evidences that almost all types of nitrogen metabolites affect, at least to some extent, auxin content and/or signaling in plants, which in turn affects seed germination, plant root elongation, gravitropism, leaf expansion and floral transition. This opinion focuses on the roles of nitrogen metabolites, NO 3 - , NH 4 + , tryptophan and NO and their synergistic effects with auxin on plant growth and development. Nitrate reductase (NR) converts nitrate into nitrite, and was roughly positive-correlated with the root auxin level, suggesting a crosstalk between nitrate signaling and auxin signaling. Abscisic Acid Responsive Element Binding Factor 3 (AFB3) and Tryptophan Aminotransferase of Arabidopsis 1 (TAA1) are also the key enzymes involved in nitrogen metabolite-regulated auxin biosynthesis. Recent advances in the crosstalk among NO 3 - , NH 4 + , tryptophan and NO in regulation to NR, AFB3 and TAA1 are also summarized.
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Affiliation(s)
- Yu-Fan Fu
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Xin-Yue Yang
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Zhong-Wei Zhang
- College of Resources, Sichuan Agricultural University, Chengdu, China
| | - Shu Yuan
- College of Resources, Sichuan Agricultural University, Chengdu, China
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Li L, Zang X, Liu J, Ren J, Wang Z, Yang D. Integrated physiological and weighted gene co-expression network analysis reveals the hub genes engaged in nitrate-regulated alleviation of ammonium toxicity at the seedling stage in wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1012966. [PMID: 36466221 PMCID: PMC9713819 DOI: 10.3389/fpls.2022.1012966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Accepted: 11/02/2022] [Indexed: 06/17/2023]
Abstract
Wheat has a specific preference for NO3 - and shows toxicity symptoms under high NH4 + concentrations. Increasing the nitrate supply may alleviate ammonium stress. Nevertheless, the mechanisms underlying the nitrate regulation of wheat root growth to alleviate ammonium toxicity remain unclear. In this study, we integrated physiological and weighted gene co-expression network analysis (WGCNA) to identify the hub genes involved in nitrate alleviation of ammonium toxicity at the wheat seedling stage. Five NH4 +/NO3 - ratio treatments, including 100/0 (Na), 75/25 (Nr1), 50/50 (Nr2), 25/75 (Nr3), and 0/100 (Nn) were tested in this study. The results showed that sole ammonium treatment (Na) increased the lateral root number but reduced root biomass. Increasing the nitrate supply significantly increased the root biomass. Increasing nitrate levels decreased abscisic acid (ABA) content and increased auxin (IAA) content. Furthermore, we identified two modules (blue and turquoise) using transcriptome data that were significantly related to root physiological growth indicators. TraesCS6A02G178000 and TraesCS2B02G056300 were identified as hub genes in the two modules which coded for plastidic ATP/ADP-transporter and WRKY62 transcription factors, respectively. Additionally, network analysis showed that in the blue module, TraesCS6A02G178000 interacts with downregulated genes that coded for indolin-2-one monooxygenase, SRG1, DETOXIFICATION, and wall-associated receptor kinase. In the turquoise module, TraesCS2B02G056300 was highly related to the genes that encoded ERD4, ERF109, CIGR2, and WD40 proteins, and transcription factors including WRKY24, WRKY22, MYB30, and JAMYB, which were all upregulated by increasing nitrate supply. These studies suggest that increasing the nitrate supply could improve root growth and alleviate ammonium toxicity through physiological and molecular regulation networks, including ROS, hormonal crosstalk, and transcription factors.
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15
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Chen M, Zhu K, Xie J, Liu J, Tan P, Peng F. Genome-Wide Identification and Expression Analysis of AMT and NRT Gene Family in Pecan (Carya illinoinensis) Seedlings Revealed a Preference for NH4+-N. Int J Mol Sci 2022; 23:ijms232113314. [PMID: 36362101 PMCID: PMC9655437 DOI: 10.3390/ijms232113314] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 10/23/2022] [Accepted: 10/28/2022] [Indexed: 11/06/2022] Open
Abstract
Nitrogen (N) is a major limiting factor for plant growth and crop production. The use of N fertilizer in forestry production is increasing each year, but the loss is substantial. Mastering the regulatory mechanisms of N uptake and transport is a key way to improve plant nitrogen use efficiency (NUE). However, this has rarely been studied in pecans. In this study, 10 AMT and 69 NRT gene family members were identified and systematically analyzed from the whole pecan genome using a bioinformatics approach, and the expression patterns of AMT and NRT genes and the uptake characteristics of NH4+ and NO3− in pecan were analyzed by aeroponic cultivation at varying NH4+/NO3− ratios (0/0, 0/100,25/75, 50/50, 75/25,100/0 as CK, T1, T2, T3, T4, and T5). The results showed that gene duplication was the main reason for the amplification of the AMT and NRT gene families in pecan, both of which experienced purifying selection. Based on qRT-PCR results, CiAMTs were primarily expressed in roots, and CiNRTs were majorly expressed in leaves, which were consistent with the distribution of pecan NH4+ and NO3− concentrations in the organs. The expression levels of CiAMTs and CiNRTs were mainly significantly upregulated under N deficiency and T4 treatment. Meanwhile, T4 treatment significantly increased the NH4+, NO3−, and NO2− concentrations as well as the Vmax and Km values of NH4+ and NO3− in pecans, and Vmax/Km indicated that pecan seedlings preferred to absorb NH4+. In summary, considering the single N source of T5, we suggested that the NH4+/NO3− ratio of 75:25 was more beneficial to improve the NUE of pecan, thus increasing pecan yield, which provides a theoretical basis for promoting the scale development of pecan and provides a basis for further identification of the functions of AMT and NRT genes in the N uptake and transport process of pecan.
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Affiliation(s)
- Mengyun Chen
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Kaikai Zhu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Junyi Xie
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- Department of Ecology, Nanjing Forestry University, Nanjing 210037, China
| | - Junping Liu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Pengpeng Tan
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Fangren Peng
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- College of Forestry, Nanjing Forestry University, Nanjing 210037, China
- Correspondence: ; Tel.: +86-25-8542-7995
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16
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Effects of Exogenous L-Asparagine on Poplar Biomass Partitioning and Root Morphology. Int J Mol Sci 2022; 23:ijms232113126. [DOI: 10.3390/ijms232113126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 10/26/2022] [Accepted: 10/26/2022] [Indexed: 11/06/2022] Open
Abstract
L-Asparagine (Asn) has been regarded as one of the most economical molecules for nitrogen (N) storage and transport in plants due to its relatively high N-to-carbon (C) ratio (2:4) and stability. Although its internal function has been addressed, the biological role of exogenous Asn in plants remains elusive. In this study, different concentrations (0.5, 1, 2, or 5 mM) of Asn were added to the N-deficient hydroponic solution for poplar ‘Nanlin895’. Morphometric analyses showed that poplar height, biomass, and photosynthesis activities were significantly promoted by Asn treatment compared with the N-free control. Moreover, the amino acid content, total N and C content, and nitrate and ammonia content were dramatically altered by Asn treatment. Moreover, exogenous Asn elicited root growth inhibition, accompanied by complex changes in the transcriptional pattern of genes and activities of enzymes associated with N and C metabolism. Combined with the plant phenotype and the physiological and biochemical indexes, our data suggest that poplar is competent to take up and utilize exogenous Asn dose-dependently. It provides valuable information and insight on how different forms of N and concentrations of Asn influence poplar root and shoot growth and function, and roles of Asn engaged in protein homeostasis regulation.
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17
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Thobor B, Tilstra A, Bourne DG, Springer K, Mezger SD, Struck U, Bockelmann F, Zimmermann L, Yánez Suárez AB, Klinke A, Wild C. The pulsating soft coral Xenia umbellata shows high resistance to warming when nitrate concentrations are low. Sci Rep 2022; 12:16788. [PMID: 36202937 PMCID: PMC9537297 DOI: 10.1038/s41598-022-21110-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 09/22/2022] [Indexed: 11/27/2022] Open
Abstract
The resistance of hard corals to warming can be negatively affected by nitrate eutrophication, but related knowledge for soft corals is scarce. We thus investigated the ecophysiological response of the pulsating soft coral Xenia umbellata to different levels of nitrate eutrophication (control = 0.6, medium = 6, high = 37 μM nitrate) in a laboratory experiment, with additional warming (27.7 to 32.8 °C) from days 17 to 37. High nitrate eutrophication enhanced cellular chlorophyll a content of Symbiodiniaceae by 168%, while it reduced gross photosynthesis by 56%. After additional warming, polyp pulsation rate was reduced by 100% in both nitrate eutrophication treatments, and additional polyp loss of 7% d−1 and total fragment mortality of 26% was observed in the high nitrate eutrophication treatment. Warming alone did not affect any of the investigated response parameters. These results suggest that X. umbellata exhibits resistance to warming, which may facilitate ecological dominance over some hard corals as ocean temperatures warm, though a clear negative physiological response occurs when combined with nitrate eutrophication. This study thus confirms the importance of investigating combinations of global and local factors to understand and manage changing coral reefs.
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Affiliation(s)
- Bianca Thobor
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany.
| | - Arjen Tilstra
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - David G Bourne
- College of Science and Engineering, James Cook University, 1 Angus Smith Drive, Douglas, QLD, 4814, Australia.,Australian Institute of Marine Science, Cape Ferguson, Townsville, QLD, 4810, Australia
| | - Karin Springer
- Faculty of Biology and Chemistry, Marine Botany, University of Bremen, NW2 Building, Leobener Str. 5, 28359, Bremen, Germany
| | - Selma Deborah Mezger
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - Ulrich Struck
- Museum Für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstr. 43, 10115, Berlin, Germany.,Department of Earth Sciences, Free University Berlin, Malteserstr. 74-100, Haus D, 12249, Berlin, Germany
| | - Franziska Bockelmann
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - Lisa Zimmermann
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - Ana Belén Yánez Suárez
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - Annabell Klinke
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
| | - Christian Wild
- Faculty of Biology and Chemistry, Department of Marine Ecology, University of Bremen, UFT Building, Leobener Str. 6, 28359, Bremen, Germany
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18
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You Q, Dong N, Yang H, Feng F, Xu Y, Wang C, Yang Y, Ma X, Bai L. The Arabidopsis Receptor-like Kinase CAP1 Promotes Shoot Growth under Ammonium Stress. BIOLOGY 2022; 11:biology11101452. [PMID: 36290356 PMCID: PMC9598605 DOI: 10.3390/biology11101452] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 09/23/2022] [Accepted: 09/29/2022] [Indexed: 11/23/2022]
Abstract
High levels of ammonium (NH4+) in soils inhibit plant growth and nitrogen utilization efficiency. Elucidating the underlying mechanisms of NH4+ toxicity is essential for alleviating the growth inhibition caused by high NH4+. Our previous work showed that [Ca2+]cyt-associated protein kinase 1 (CAP1) regulates root hair growth in response to NH4+ in Arabidopsis thaliana, and the cap1-1 mutant produces short root hairs under NH4+ stress conditions. However, it is unclear whether CAP1 functions in other physiological processes in response to NH4+. In the present study, we found that CAP1 also plays a role in attenuating NH4+ toxicity to promote shoot growth. The cap1-1 mutant produced smaller shoots with smaller epidermal cells compared with the wild type in response to NH4+ stress. Disruption of CAP1 enhanced the NH4+-mediated inhibition of the expression of cell enlargement-related genes. The cap1-1 mutant showed elevated reactive oxygen species (ROS) levels under NH4+ stress, as well as increased expression of respiratory burst oxidase homologue genes and decreased expression of catalase genes compared with the wild type. Our data reveal that CAP1 attenuates NH4+-induced shoot growth inhibition by promoting cell wall extensibility and ROS homeostasis, thereby highlighting the role of CAP1 in the NH4+ signal transduction pathway.
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19
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Genome-Wide Identification and Functional Characterization Reveals the Pivotal Roles of BnaA8.ATG8F in Salt Stress Tolerance and Nitrogen Limitation Adaptation in Allotetraploid Rapeseed. Int J Mol Sci 2022; 23:ijms231911318. [PMID: 36232619 PMCID: PMC9569553 DOI: 10.3390/ijms231911318] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 09/10/2022] [Accepted: 09/19/2022] [Indexed: 11/17/2022] Open
Abstract
Autophagy is a common physiological process in organisms, including higher plants. The ATG8 subfamily, the core member of the autophagy-related gene (ATG) family, plays a key role in plant growth and development and nutrient stress responses. However, the core ATG8 homologs and their roles in stress resistance remain elusive in allotetraploid rapeseed (AACC, Brassica napus L.). In this study, we identified 29 ATG8 subgroup members, consisting of three phylogenetic clades, based on the analysis of genomic annotation and conserved motifs. Differential transcriptional responses of BnaATG8s to salt stress, nitrogen limitation, and other nutrient stresses were investigated, and we identified BnaA8.ATG8F as the core ATG8 member through gene co-expression network analysis. Decreased BnaA8.ATG8F expression repressed the salt tolerance of transgenic rapeseed plants by significantly reducing the root Na+ retention under salt stress. Moreover, downregulation of BnaA8.ATG8F increased nitrogen (N) limitation sensitivity of transgenic rapeseed plants through decreasing N uptake, translocation, and enhancing N remobilization under nitrogen starvation. In summary, we identified the core ATG8 homologs and characterized their physiological and molecular mechanisms underlying salt stress tolerance and nitrogen limitation adaptation. Our results may provide elite genetic resources for the genetic improvement of nutrient stress tolerance in rapeseed.
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20
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Irrigation with Magnetized Water Alleviates the Harmful Effect of Saline-Alkaline Stress on Rice Seedlings. Int J Mol Sci 2022; 23:ijms231710048. [PMID: 36077438 PMCID: PMC9456538 DOI: 10.3390/ijms231710048] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 08/29/2022] [Accepted: 08/30/2022] [Indexed: 11/17/2022] Open
Abstract
Saline–alkaline stress suppresses rice growth and threatens crop production. Despite substantial research on rice’s tolerance to saline–alkaline stress, fewer studies have examined the impact of magnetic water treatments on saline–alkaline-stressed rice plants. We explored the physiological and molecular mechanisms involved in saline–alkaline stress tolerance enhancement via irrigation with magnetized water using Nipponbare. The growth of Nipponbare plants was inhibited by saline–alkaline stress, but this inhibition was alleviated by irrigating the plants with magnetized water, as evidenced by greater plant height, biomass, chlorophyll content, photosynthetic rates, and root system in plants irrigated with magnetized water compared to those irrigated with non-magnetized water. Plants that were irrigated with magnetized water were able to acquire more total nitrogen. In addition, we proved that rice seedlings irrigated with magnetized water had a greater root NO3−-nitrogen concentration and root NH4+-nitrogen concentration than plants irrigated with non-magnetized water. These findings suggest that treatment with magnetized water could increase nitrogen uptake. To test this hypothesis, we analyzed the expression levels of genes involved in nitrogen acquisition. The expression levels of OsNRT1;1, OsNRT1;2, OsNRT2;1, OsAMT1;2, OsAMT2;1, OsAMT2;2, OsAMT2;3, OsAMT3;1, OsAMT3;2, and OsAMT3;3 were higher in plants exposed to magnetized water medium compared to those exposed to non-magnetized water media. We further demonstrated that treatment with magnetized water increases available nitrogen, NO3−-nitrogen content, and NH4+-nitrogen content in soil under saline–alkaline stress. Our results revealed that the increased resistance of rice seedlings to saline–alkaline stress may be attributable to a very effective nitrogen acquisition system enhanced by magnetized water.
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21
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Wang Y, Ouyang JX, Fan DM, Wang SM, Xuan YM, Wang XC, Zheng XQ. Transcriptome analysis of tea ( Camellia sinensis) leaves in response to ammonium starvation and recovery. FRONTIERS IN PLANT SCIENCE 2022; 13:963269. [PMID: 36119592 PMCID: PMC9472221 DOI: 10.3389/fpls.2022.963269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 08/04/2022] [Indexed: 06/15/2023]
Abstract
The tea plant is a kind of ammonium-preferring crop, but the mechanism whereby ammonium (NH4 +) regulate its growth is not well understood. The current study focused on the effects of NH4 + on tea plants. Transcriptomic analysis was performed to investigate the early- and late-stage NH4 + deprivation and resupply in tea plants shoots. Through short- and long-term NH4 + deficiency, the dynamic response to NH4 + stress was investigated. The most significant effects of NH4 + deficiency were found to be on photosynthesis and gene ontology (GO) enrichment varied with the length of NH4 + deprivation. Enriched KEGG pathways were also different when NH4 + was resupplied at different concentrations which may indicate reasons for tolerance of high NH4 + concentration. Using weighted gene co-expression network analysis (WGCNA), modules related to significant tea components, tea polyphenols and free amino acids, were identified. Hence, NH4 + could be regarded as a signaling molecule with the response of catechins shown to be higher than that of amino acids. The current work represents a comprehensive transcriptomic analysis of plant responses to NH4 + and reveals many potential genes regulated by NH4 + in tea plants. Such findings may lead to improvements in nitrogen efficiency of tea plants.
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Affiliation(s)
- Yu Wang
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Jia-Xue Ouyang
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Dong-Mei Fan
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Shu-Mao Wang
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Yi-Min Xuan
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
| | - Xiao-Chang Wang
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
- Institute of Dafo Longjing, Xinchang, China
| | - Xin-Qiang Zheng
- College of Agriculture and Biotechnology, Tea Research Institute, Zhejiang University, Hangzhou, China
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Fu W, Cao X, An T, Zhao H, Zhang J, Li D, Jin X, Liu B. Genome-wide identification of resistance genes and transcriptome regulation in yeast to accommodate ammonium toxicity. BMC Genomics 2022; 23:514. [PMID: 35840887 PMCID: PMC9287935 DOI: 10.1186/s12864-022-08742-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 07/07/2022] [Indexed: 12/04/2022] Open
Abstract
Background Ammonium is an important raw material for biomolecules and life activities, and the toxicity of ammonium is also an important ecological and agricultural issue. Ammonium toxicity in yeast has only recently been discovered, and information on its mechanism is limited. In recent years, environmental pollution caused by nitrogen-containing wastewater has been increasing. In addition, the use of yeast in bioreactors to produce nitrogen-containing compounds has been developed. Therefore, research on resistance mechanisms that allow yeast to grow under conditions of high concentrations of ammonium has become more and more important. Results To further understand the resistance mechanism of yeast to grow under high concentration of ammonium, we used NH4Cl to screen a yeast non-essential gene-deletion library. We identified 61 NH4Cl-sensitive deletion mutants from approximately 4200 mutants in the library, then 34 of them were confirmed by drop test analysis. Enrichment analysis of these 34 genes showed that biosynthesis metabolism, mitophagy, MAPK signaling, and other pathways may play important roles in NH4Cl resistance. Transcriptome analysis under NH4Cl stress revealed 451 significantly upregulated genes and 835 significantly downregulated genes. The genes are mainly enriched in: nitrogen compound metabolic process, cell wall, MAPK signaling pathway, mitophagy, and glycine, serine and threonine metabolism. Conclusions Our results present a broad view of biological pathways involved in the response to NH4Cl stress, and thereby advance our understanding of the resistance genes and cellular transcriptional regulation under high concentration of ammonium. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-022-08742-y.
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Affiliation(s)
- Wenhao Fu
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Xiuling Cao
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China.
| | - Tingting An
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Huihui Zhao
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Jie Zhang
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Danqi Li
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Xuejiao Jin
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China.
| | - Beidong Liu
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China. .,Department of Chemistry and Molecular Biology, University of Gothenburg, Medicinaregatan 9C, SE-413 90, Goteborg, Sweden. .,Center for Large-Scale Cell-Based Screening, Faculty of Science, University of Gothenburg, Medicinaregatan 9C, SE-413 90, Goteborg, Sweden.
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23
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Wu XX, Yuan DP, Chen H, Kumar V, Kang SM, Jia B, Xuan YH. Ammonium transporter 1 increases rice resistance to sheath blight by promoting nitrogen assimilation and ethylene signalling. PLANT BIOTECHNOLOGY JOURNAL 2022; 20:1085-1097. [PMID: 35170194 PMCID: PMC9129087 DOI: 10.1111/pbi.13789] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 02/01/2022] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
Abstract
Sheath blight (ShB) significantly threatens rice yield production. However, the underlying mechanism of ShB defence in rice remains largely unknown. Here, we identified a highly ShB-susceptible mutant Ds-m which contained a mutation at the ammonium transporter 1;1 (AMT1;1) D358 N. AMT1;1 D358 N interacts with AMT1;1, AMT1;2 and AMT1;3 to inhibit the ammonium transport activity. The AMT1 RNAi was more susceptible and similar to the AMT1;1 D358 N mutant; however, plants with higher NH4+ uptake activity were less susceptible to ShB. Glutamine synthetase 1;1 (GS1;1) mutant gs1;1 and overexpressors (GS1;1 OXs) were more and less susceptible to ShB respectively. Furthermore, AMT1;1 overexpressor (AMT1;1 OX)/gs1;1 and gs1;1 exhibited a similar response to ShB, suggesting that ammonium assimilation rather than accumulation controls the ShB defence. Genetic and physiological assays further demonstrated that plants with higher amino acid or chlorophyll content promoted rice resistance to ShB. Interestingly, the expression of ethylene-related genes was higher in AMT1;1 OX and lower in RNAi mutants than in wild-type. Also, ethylene signalling positively regulated rice resistance to ShB and NH4+ uptake, suggesting that ethylene signalling acts downstream of AMT and also NH4+ uptake is under feedback control. Taken together, our data demonstrated that the AMT1 promotes rice resistance to ShB via the regulation of diverse metabolic and signalling pathways.
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Affiliation(s)
- Xian Xin Wu
- College of Plant ProtectionShenyang Agricultural UniversityShenyangChina
| | - De Peng Yuan
- College of Plant ProtectionShenyang Agricultural UniversityShenyangChina
| | - Huan Chen
- College of Plant ProtectionShenyang Agricultural UniversityShenyangChina
| | - Vikranth Kumar
- Division of Plant SciencesUniversity of MissouriColumbiaMOUSA
| | | | - Baolei Jia
- School of BioengineeringState Key Laboratory of Biobased Material and Green PapermakingQilu University of Technology (Shandong Academy of Sciences)JinanChina
- Department of Life SciencesChung‐Ang UniversitySeoulSouth Korea
| | - Yuan Hu Xuan
- College of Plant ProtectionShenyang Agricultural UniversityShenyangChina
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24
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Li G, Zhang L, Wu J, Yue X, Wang M, Sun L, Di D, Kronzucker HJ, Shi W. OsEIL1 protects rice growth under NH 4+ nutrition by regulating OsVTC1-3-dependent N-glycosylation and root NH 4+ efflux. PLANT, CELL & ENVIRONMENT 2022; 45:1537-1553. [PMID: 35133011 DOI: 10.1111/pce.14283] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Accepted: 01/10/2022] [Indexed: 06/14/2023]
Abstract
Rice is known for its superior adaptation to ammonium (NH4+ ) as a nitrogen source. Compared to many other cereals, it displays lower NH4+ efflux in roots and higher nitrogen-use efficiency on NH4+ . A critical role for GDP-mannose pyrophosphorylase (VTC1) in controlling root NH4+ fluxes was previously documented in Arabidopsis, but the molecular pathways involved in regulating VTC1-dependent NH4+ efflux remain unclear. Here, we report that ETHYLENE-INSENSITIVE3-LIKE1 (OsEIL1) acts as a key transcription factor regulating OsVTC1-3-dependent NH4+ efflux and protein N-glycosylation in rice grown under NH4+ nutrition. We show that OsEIL1 in rice plays a contrasting role to Arabidopsis-homologous ETHYLENE-INSENSITIVE3 (AtEIN3) and maintains rice growth under NH4+ by stabilizing protein N-glycosylation and reducing root NH4+ efflux. OsEIL1 constrains NH4+ efflux by activation of OsVTC1-3, but not OsVTC1-1 or OsVTC1-8. OsEIL1 binds directly to the promoter EIN3-binding site (EBS) of OsVTC1-3 in vitro and in vivo and acts to increase the transcription of OsVTC1-3. Our work demonstrates an important link between excessive root NH4+ efflux and OsVTC1-3-mediated protein N-glycosylation in rice grown under NH4+ nutrition and identifies OsEIL1 as a direct genetic regulator of OsVTC1-3 expression.
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Affiliation(s)
- Guangjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Lin Zhang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Jinlin Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- University of the Chinese Academy of Sciences, Beijing, China
| | - Xiaowei Yue
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Meng Wang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Li Sun
- School of BioSciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Dongwei Di
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Herbert J Kronzucker
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, Jiangsu, China
- Faculty of Land and Food Systems, University of British Columbia, Vancouver, British Columbia, Canada
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
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25
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Xiao C, Sun D, Liu B, Fang X, Li P, Jiang Y, He M, Li J, Luan S, He K. Nitrate transporter NRT1.1 and anion channel SLAH3 form a functional unit to regulate nitrate-dependent alleviation of ammonium toxicity. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2022; 64:942-957. [PMID: 35229477 DOI: 10.1111/jipb.13239] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Accepted: 02/27/2022] [Indexed: 06/14/2023]
Abstract
Ammonium (NH4 + ) and nitrate (NO3 - ) are major inorganic nitrogen (N) sources for plants. When serving as the sole or dominant N supply, NH4 + often causes root inhibition and shoot chlorosis in plants, known as ammonium toxicity. NO3 - usually causes no toxicity and can mitigate ammonium toxicity even at low concentrations, referred to as nitrate-dependent alleviation of ammonium toxicity. Our previous studies indicated a NO3 - efflux channel SLAH3 is involved in this process. However, whether additional components contribute to NO3 - -mediated NH4 + detoxification is unknown. Previously, mutations in NO3 - transporter NRT1.1 were shown to cause enhanced resistance to high concentrations of NH4 + . Whereas, in this study, we found when the high-NH4 + medium was supplemented with low concentrations of NO3 - , nrt1.1 mutant plants showed hyper-sensitive phenotype instead. Furthermore, mutation in NRT1.1 caused enhanced medium acidification under high-NH4 + /low-NO3 - condition, suggesting NRT1.1 regulates ammonium toxicity by facilitating H+ uptake. Moreover, NRT1.1 was shown to interact with SLAH3 to form a transporter-channel complex. Interestingly, SLAH3 appeared to affect NO3 - influx while NRT1.1 influenced NO3 - efflux, suggesting NRT1.1 and SLAH3 regulate each other at protein and/or gene expression levels. Our study thus revealed NRT1.1 and SLAH3 form a functional unit to regulate nitrate-dependent alleviation of ammonium toxicity through regulating NO3 - transport and balancing rhizosphere acidification.
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Affiliation(s)
- Chengbin Xiao
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Doudou Sun
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
- School of Life Sciences, Henan Agricultural University, Zhengzhou, 450000, China
| | - Beibei Liu
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Xianming Fang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Pengcheng Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Yao Jiang
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Mingming He
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
| | - Jia Li
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
- School of Life Sciences, Guangzhou University, Guangzhou, 510006, China
| | - Sheng Luan
- Department of Plant and Microbial Biology, University of California, Berkeley, 94720, CA, USA
| | - Kai He
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou University, Lanzhou, 730000, China
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26
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Ortigosa F, Lobato-Fernández C, Shikano H, Ávila C, Taira S, Cánovas FM, Cañas RA. Ammonium regulates the development of pine roots through hormonal crosstalk and differential expression of transcription factors in the apex. PLANT, CELL & ENVIRONMENT 2022; 45:915-935. [PMID: 34724238 DOI: 10.1111/pce.14214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 10/25/2021] [Indexed: 06/13/2023]
Abstract
Ammonium is a prominent source of inorganic nitrogen for plant nutrition, but excessive amounts can be toxic for many species. However, most conifers are tolerant to ammonium, a relevant physiological feature of this ancient evolutionary lineage. For a better understanding of the molecular basis of this trait, ammonium-induced changes in the transcriptome of maritime pine (Pinus pinaster Ait.) root apex have been determined by laser capture microdissection and RNA sequencing. Ammonium promoted changes in the transcriptional profiles of multiple transcription factors, such as SHORT-ROOT, and phytohormone-related transcripts, such as ACO, involved in the development of the root meristem. Nano-PALDI-MSI and transcriptomic analyses showed that the distributions of IAA and CKs were altered in the root apex in response to ammonium nutrition. Taken together, the data suggest that this early response is involved in the increased lateral root branching and principal root growth, which characterize the long-term response to ammonium supply in pine. All these results suggest that ammonium induces changes in the root system architecture through the IAA-CK-ET phytohormone crosstalk and transcriptional regulation.
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Affiliation(s)
- Francisco Ortigosa
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
| | - César Lobato-Fernández
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
| | - Hitomi Shikano
- Faculty of Food and Agricultural Sciences, Fukushima University, Kanayagawa, Fukushima, Japan
| | - Concepción Ávila
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
| | - Shu Taira
- Faculty of Food and Agricultural Sciences, Fukushima University, Kanayagawa, Fukushima, Japan
| | - Francisco M Cánovas
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
| | - Rafael A Cañas
- Grupo de Biología Molecular y Biotecnología, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
- Integrative Molecular Biology Lab, Departamento de Biología Molecular y Bioquímica, Universidad de Málaga, Campus Universitario de Teatinos, Málaga, Spain
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27
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Xie H, Zhao W, Li W, Zhang Y, Hajný J, Han H. Small signaling peptides mediate plant adaptions to abiotic environmental stress. PLANTA 2022; 255:72. [PMID: 35218440 DOI: 10.1007/s00425-022-03859-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Accepted: 02/14/2022] [Indexed: 05/27/2023]
Abstract
Peptide-receptor complexes activate distinct downstream regulatory networks to mediate plant adaptions to abiotic environmental stress. Plants are constantly exposed to various adverse environmental factors; thus they must adjust their growth accordingly. Plants recruit small secretory peptides to adapt to these detrimental environments. These small peptides, which are perceived by their corresponding receptors and/or co-receptors, act as local- or long-distance mobile signaling molecules to establish cell-to-cell regulatory networks, resulting in optimal cellular and physiological outputs. In this review, we highlight recent advances on the regulatory role of small peptides in plant abiotic responses and nutrients signaling.
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Affiliation(s)
- Heping Xie
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi, Nanchang, 330045, China
| | - Wen Zhao
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi, Nanchang, 330045, China
| | - Weilin Li
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi, Nanchang, 330045, China
| | - Yuzhou Zhang
- College of Life Science, Northwest A&F University, Shaanxi, 712100, Yangling, China
| | - Jakub Hajný
- Laboratory of Growth Regulators, Institute of Experimental Botany and Palacký University, The Czech Academy of Sciences, Šlechtitelů 27, 78371, Olomouc, Czech Republic
| | - Huibin Han
- College of Bioscience and Bioengineering, Jiangxi Agricultural University, Jiangxi, Nanchang, 330045, China.
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28
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Rivera Pérez CA, Janz D, Schneider D, Daniel R, Polle A. Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil. mSystems 2022; 7:e0095721. [PMID: 35089084 PMCID: PMC8725588 DOI: 10.1128/msystems.00957-21] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 11/29/2021] [Indexed: 01/05/2023] Open
Abstract
Mineral nitrogen (N) is a major nutrient showing strong fluctuations in the environment due to anthropogenic activities. The acquisition and translocation of N to forest trees are achieved mainly by highly diverse ectomycorrhizal fungi (EMF) living in symbioses with their host roots. Here, we examined colonized root tips to characterize the entire root-associated fungal community by DNA metabarcoding-Illumina sequencing of the fungal internal transcribed spacer 2 (ITS2) molecular marker and used RNA sequencing to target metabolically active fungi and the plant transcriptome after N application. The study was conducted with beech (Fagus sylvatica L.), a dominant tree species in central Europe, grown in native forest soil. We demonstrate strong enrichment of 15N from nitrate or ammonium in the ectomycorrhizal roots by stable-isotope labeling. The relative abundance of the EMF members in the fungal community was correlated with their transcriptional abundances. The fungal metatranscriptome covered Kyoto Encyclopedia of Genes and Genomes (KEGG) and Eukaryotic Orthologous Groups (KOG) categories similar to those of model fungi and did not reveal significant changes related to N metabolization but revealed species-specific transcription patterns, supporting trait stability. In contrast to the resistance of the fungal metatranscriptome, the transcriptome of the host exhibited dedicated nitrate- or ammonium-responsive changes with the upregulation of transporters and enzymes required for nitrate reduction and a drastic enhancement of glutamine synthetase transcript levels, indicating the channeling of ammonium into the pathway for plant protein biosynthesis. Our results support that naturally assembled fungal communities living in association with the tree roots buffer nutritional signals in their own metabolism but do not shield plants from high environmental N levels. IMPORTANCE Although EMF are well known for their role in supporting tree N nutrition, the molecular mechanisms underlying N flux from the soil solution into the host through the ectomycorrhizal pathway remain widely unknown. Furthermore, ammonium and nitrate availability in the soil solution is subject to frequent oscillations that create a dynamic environment for the tree roots and associated microbes during N acquisition. Therefore, it is important to understand how root-associated mycobiomes and the tree roots handle these fluctuations. We studied the responses of the symbiotic partners by screening their transcriptomes after a sudden environmental flux of nitrate or ammonium. We show that the fungi and the host respond asynchronously, with the fungi displaying resistance to increased nitrate or ammonium and the host dynamically metabolizing the supplied N sources. This study provides insights into the molecular mechanisms of the symbiotic partners operating under N enrichment in a multidimensional symbiotic system.
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Affiliation(s)
- Carmen Alicia Rivera Pérez
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
| | - Dennis Janz
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
| | - Dominik Schneider
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
- Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
| | - Rolf Daniel
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
- Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
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29
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Wang L, Xu H, Zhang H, Zhang Y. Grazing and Mowing Affect the Carbon-to-Nitrogen Ratio of Plants by Changing the Soil Available Nitrogen Content and Soil Moisture on the Meadow Steppe, China. PLANTS 2022; 11:plants11030286. [PMID: 35161265 PMCID: PMC8839234 DOI: 10.3390/plants11030286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 01/16/2022] [Accepted: 01/19/2022] [Indexed: 11/22/2022]
Abstract
Common grassland management practices affect plant and soil element stoichiometry, but the primary environmental factors driving variation in plant C/N ratios for different species in different types of grassland management remain poorly understood. We examined the three dominant C/N stoichiometric responses of plants to different land uses (moderate grazing and mowing) in the temperate meadow steppe of northern China. Our results showed that the responses of the C/N ratio of dominant plants differed according to the management practice. The relative abundance of N in plant tissues increased due to increased soil NO3−, with a consequent decrease in plant C: N in the shoots of Leymus chinensis, but the C/N ratio and nitrogen concentration in the shoots of Bromus inermis and Potentilla bifurca were relatively stable under short-term moderate grazing management. Mowing reduced the concentration of soil NH4+, thus reducing the nitrogen concentration of the roots, resulting in a decrease in the root C/N ratio of Potentilla bifurca. Structural equation model (SEM) showed that the root C/N ratio was affected by both root N and soil inorganic N, while shoot C/N ratio was only affected by the soil inorganic N. Our findings provide a mechanistic understanding of the responses of plant C/N ratio to land use change. The species-level responses of plant stoichiometry to human-managed grasslands deserve more attention.
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Affiliation(s)
- Le Wang
- College of Grassland Science and Technology, China Agricultural University, 2 Yuan Ming Yuan West Road, Haidian District, Beijing 100193, China; (L.W.); (H.X.); (H.Z.)
| | - Hengkang Xu
- College of Grassland Science and Technology, China Agricultural University, 2 Yuan Ming Yuan West Road, Haidian District, Beijing 100193, China; (L.W.); (H.X.); (H.Z.)
| | - Hao Zhang
- College of Grassland Science and Technology, China Agricultural University, 2 Yuan Ming Yuan West Road, Haidian District, Beijing 100193, China; (L.W.); (H.X.); (H.Z.)
| | - Yingjun Zhang
- College of Grassland Science and Technology, China Agricultural University, 2 Yuan Ming Yuan West Road, Haidian District, Beijing 100193, China; (L.W.); (H.X.); (H.Z.)
- Key Laboratory of Grassland Management and Rational Utilization, Ministry of Agriculture and Rural Affairs, Beijing 100193, China
- Correspondence:
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30
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Zhou J, Yang LY, Chen X, Shi WG, Deng SR, Luo ZB. Genome-Wide Identification and Characterization of Long Noncoding RNAs in Populus × canescens Roots Treated With Different Nitrogen Fertilizers. FRONTIERS IN PLANT SCIENCE 2022; 13:890453. [PMID: 35646010 PMCID: PMC9135444 DOI: 10.3389/fpls.2022.890453] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 04/19/2022] [Indexed: 05/14/2023]
Abstract
Nitrate (NO3 -) and ammonium (NH4 +) are the primary forms of inorganic nitrogen acquired by plant roots. LncRNAs, as key regulators of gene expression, are a class of non-coding RNAs larger than 200 bp. However, knowledge about the regulatory role of lncRNAs in response to different nitrogen forms remains limited, particularly in woody plants. Here, we performed strand-specific RNA-sequencing of P. × canescens roots under three different nitrogen fertilization treatments. In total, 324 lncRNAs and 6,112 mRNAs were identified as showing significantly differential expression between the NO3 - and NH4NO3 treatments. Moreover, 333 lncRNAs and 6,007 mRNAs showed significantly differential expression between the NH4 + and NH4NO3 treatments. Further analysis suggested that these lncRNAs and mRNAs have different response mechanisms for different nitrogen forms. In addition, functional annotation of cis and trans target mRNAs of differentially expressed lncRNAs indicated that 60 lncRNAs corresponding to 49 differentially expressed cis and trans target mRNAs were involved in plant nitrogen metabolism and amino acid biosynthesis and metabolism. Furthermore, 42 lncRNAs were identified as putative precursors of 63 miRNAs, and 28 differentially expressed lncRNAs were potential endogenous target mimics targeted by 96 miRNAs. Moreover, ceRNA regulation networks were constructed. MSTRG.6097.1, MSTRG.13550.1, MSTRG.2693.1, and MSTRG.12899.1, as hub lncRNAs in the ceRNA networks, are potential candidate lncRNAs for studying the regulatory mechanism in poplar roots under different nitrogen fertilization treatments. The results provide a basis for obtaining insight into the molecular mechanisms of lncRNA responses to different nitrogen forms in woody plants.
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Chen M, Yin Y, Zhang L, Yang X, Fu T, Huo X, Wang Y. Metabolomics and Transcriptomics Integration of Early Response of Populus tomentosa to Reduced Nitrogen Availability. FRONTIERS IN PLANT SCIENCE 2021; 12:769748. [PMID: 34956269 PMCID: PMC8692568 DOI: 10.3389/fpls.2021.769748] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Accepted: 11/09/2021] [Indexed: 06/14/2023]
Abstract
Nitrogen (N) is one of the most crucial elements for plant growth and development. However, little is known about the metabolic regulation of trees under conditions of N deficiency. In this investigation, gas chromatography-mass spectrometry (GC-MS) was used to determine global changes in metabolites and regulatory pathways in Populus tomentosa. Thirty metabolites were found to be changed significantly under conditions of low-N stress. N deficiency resulted in increased levels of carbohydrates and decreases in amino acids and some alcohols, as well as some secondary metabolites. Furthermore, an RNA-sequencing (RNA-Seq) analysis was performed to characterize the transcriptomic profiles, and 1,662 differentially expressed genes were identified in P. tomentosa. Intriguingly, four pathways related to carbohydrate metabolism were enriched. Genes involved in the gibberellic acid and indole-3-acetic acid pathways were found to be responsive to low-N stress, and the contents of hormones were then validated by high-performance liquid chromatography/electrospray ionization tandem mass spectrometry (HPLC-ESI-MS/MS). Coordinated metabolomics and transcriptomics analysis revealed a pattern of co-expression of five pairs of metabolites and unigenes. Overall, our investigation showed that metabolism directly related to N deficiency was depressed, while some components of energy metabolism were increased. These observations provided insights into the metabolic and molecular mechanisms underlying the interactions of N and carbon in poplar.
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Affiliation(s)
- Min Chen
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
- School of Life Sciences, Tsinghua University, Beijing, China
| | - Yiyi Yin
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Lichun Zhang
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Xiaoqian Yang
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Tiantian Fu
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Xiaowei Huo
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
| | - Yanwei Wang
- National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, The Tree and Ornamental Plant Breeding and Biotechnology Laboratory of National Forestry and Grassland Administration, College of Biological Sciences and Biotechnology, Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, China
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Du W, Zhang Y, Si J, Zhang Y, Fan S, Xia H, Kong L. Nitrate alleviates ammonium toxicity in wheat ( Triticum aestivum L.) by regulating tricarboxylic acid cycle and reducing rhizospheric acidification and oxidative damage. PLANT SIGNALING & BEHAVIOR 2021; 16:1991687. [PMID: 34753392 PMCID: PMC9208799 DOI: 10.1080/15592324.2021.1991687] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Ammonium (NH4+) is one of the most important nutrients required by plants. However, a high concentration of NH4+ as the sole nitrogen source suppresses plant growth. Although nitrate (NO3-) can alleviate NH4+ toxicity, the mechanisms underlying this ability have not been fully elucidated. In this study, wheat plants were cultivated in hydroponic solution with 7.5 mM NO3- (control), 7.5 mM NH4+ (sole ammonium, SA) or 7.5 mM NH4+ plus 1.0 mM NO3- (ammonium and nitrate, AN). The results showed that compared with the control, the SA treatment significantly decreased root growth, protein content and the concentrations of most intermediates and the activity of enzymes from the tricarboxylic acid (TCA) cycle. Moreover, increased the activity of plasma membrane H+-ATPase and the rate of H+ efflux along roots, caused solution acidification, and increased the activity of mitochondrial respiratory chain complexes I-IV and the contents of protein-bound carbonyls and malondialdehyde in roots. SA treatment induced ultrastructure disruption and reduced the viability of root cells. Compared with the SA treatment, the AN treatment increased root growth, protein content, the concentrations of most intermediates and the activity of enzymes from the TCA cycle. Furthermore, AN treatment decreased the rate of H+ efflux, retarded medium acidification, decreased protein carbonylation and lipid peroxidation in roots and relieved ultrastructure disruption and increased the viability of root cells. Taken together, these results indicate that NO3--dependent alleviation of NH4+ toxicity in wheat seedlings is closely associated with physiological processes that mediate TCA cycle, relieve rhizospheric acidification and decrease the production of ROS and oxidative damage.
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Affiliation(s)
- Wanying Du
- College of Life Science, Shandong Normal University, Jinan, China
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Yunxiu Zhang
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Jisheng Si
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Yan Zhang
- College of Life Science, Shandong Normal University, Jinan, China
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Shoujin Fan
- College of Life Science, Shandong Normal University, Jinan, China
| | - Haiyong Xia
- College of Life Science, Shandong Normal University, Jinan, China
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
| | - Lingan Kong
- College of Life Science, Shandong Normal University, Jinan, China
- Crop Research Institute, Shandong Academy of Agricultural Sciences, Jinan, China
- CONTACT Lingan Kong Crop Research Institute, Shandong Academy of Agricultural Sciences , 202Gongyebei Road, Jinan250100, China
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Chen H, Zhang Q, Wang X, Zhang J, Ismail AM, Zhang Z. Nitrogen form-mediated ethylene signal regulates root-to-shoot K + translocation via NRT1.5. PLANT, CELL & ENVIRONMENT 2021; 44:3576-3588. [PMID: 34505300 DOI: 10.1111/pce.14182] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Revised: 08/23/2021] [Accepted: 08/28/2021] [Indexed: 05/28/2023]
Abstract
Nitrogen-potassium synergistic and antagonistic interactions are the typical case of nutrient interactions. However, the underlying mechanism for the integration of the external N form into K+ homeostasis remains unclear. Here, we show that opposite effects of NO3- and NH4+ on root-shoot K+ translocation were due to differential regulation of an ethylene signalling pathway targeting the NRT1.5 transporter. NH4+ upregulated the transcriptional activity of EIN3, but repressed the expression of NRT1.5. However, the addition of NO3- strongly suppressed the activity of EIN3, whereas its addition upregulated the expression of AtNRT1.5 and shoot K+ concentration. The 35S:EIN3/ein3eil1 plants, nrt1.5 mutants and nrt1.5/skor double mutants displayed a low K+ chlorosis phenotype, especially under NH4+ conditions with low K+ supply. Ion content analyses indicate that root-to-shoot K+ translocation was significantly reduced in these mutants. A Y1H assay, an EMSA and a transient expression assay confirmed that AtEIN3 protein could directly bind to the promoter of NRT1.5 to repress its expression. Furthermore, grafted plants with the roots of 35S:EIN3 and ein3eil1/nrt1.5 mutants displayed marked leaf chlorosis with a low K+ concentration. Collectively, our findings reveal that the interaction between N form and K+ was achieved by modulating root-derived ethylene signals to regulate root-to-shoot K+ translocation via NRT1.5.
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Affiliation(s)
- Haifei Chen
- College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Quan Zhang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha, China
| | - Xueru Wang
- College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
| | - Jianhua Zhang
- Department of Biology, Hong Kong Baptist University, and State Key Laboratory of Agrobiotechnology, Chinese University of Hong Kong, Hong Kong, China
| | - Abdelbagi M Ismail
- Crop Environment Science Division, International Rice Research Institute, Metro Manila, Philippines
| | - Zhenhua Zhang
- College of Resources and Environmental Sciences, Hunan Agricultural University, Changsha, China
- National Center of Oilseed Crops Improvement, Hunan Branch, Hunan Agricultural University, Changsha, China
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Song X, Li J, Lyu M, Kong X, Hu S, Song Q, Zuo K. CALMODULIN-LIKE-38 and PEP1 RECEPTOR 2 integrate nitrate and brassinosteroid signals to regulate root growth. PLANT PHYSIOLOGY 2021; 187:1779-1794. [PMID: 34618046 PMCID: PMC8566301 DOI: 10.1093/plphys/kiab323] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Accepted: 06/22/2021] [Indexed: 05/23/2023]
Abstract
Plants exhibit remarkable developmental plasticity, enabling them to adapt to adverse environmental conditions such as low nitrogen (N) in the soil. Brassinosteroids (BRs) promote root foraging for nutrients under mild N deficiency, but the crosstalk between the BR- and N-signaling pathways in the regulation of root growth remains largely unknown. Here, we show that CALMODULIN-LIKE-38 (CML38), a calmodulin-like protein, specifically interacts with the PEP1 RECEPTOR 2 (PEPR2), and negatively regulates root elongation in Arabidopsis (Arabidopsis thaliana) in response to low nitrate (LN). CML38 and PEPR2 are transcriptionally induced by treatments of exogenous nitrate and BR. Compared with Col-0, the single mutants cml38 and pepr2 and the double mutant cml38 pepr2 displayed enhanced primary root growth and produced more lateral roots under LN. This is consistent with their higher nitrate absorption abilities, and their stronger expression of nitrate assimilation genes. Furthermore, CML38 and PEPR2 regulate common downstream genes related to BR signaling, and they have positive roles in BR signaling. Low N facilitated BR signal transmission in Col-0 and CML38- or PEPR2-overexpressing plants, but not in the cml38 and pepr2 mutants. Taken together, our results illustrate a mechanism by which CML38 interacts with PEPR2 to integrate LN and BR signals for coordinating root development to prevent quick depletion of N resources in Arabidopsis.
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Affiliation(s)
- Xiaoyun Song
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Jianfu Li
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Mengli Lyu
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xiuzhen Kong
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Shi Hu
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Qingwei Song
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Kaijing Zuo
- Plant Biotech Center: Center of Single Cell Research, School of Agriculture and Life Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
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35
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Møller IM, Rasmusson AG, Van Aken O. Plant mitochondria - past, present and future. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 108:912-959. [PMID: 34528296 DOI: 10.1111/tpj.15495] [Citation(s) in RCA: 78] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 09/02/2021] [Accepted: 09/06/2021] [Indexed: 06/13/2023]
Abstract
The study of plant mitochondria started in earnest around 1950 with the first isolations of mitochondria from animal and plant tissues. The first 35 years were spent establishing the basic properties of plant mitochondria and plant respiration using biochemical and physiological approaches. A number of unique properties (compared to mammalian mitochondria) were observed: (i) the ability to oxidize malate, glycine and cytosolic NAD(P)H at high rates; (ii) the partial insensitivity to rotenone, which turned out to be due to the presence of a second NADH dehydrogenase on the inner surface of the inner mitochondrial membrane in addition to the classical Complex I NADH dehydrogenase; and (iii) the partial insensitivity to cyanide, which turned out to be due to an alternative oxidase, which is also located on the inner surface of the inner mitochondrial membrane, in addition to the classical Complex IV, cytochrome oxidase. With the appearance of molecular biology methods around 1985, followed by genomics, further unique properties were discovered: (iv) plant mitochondrial DNA (mtDNA) is 10-600 times larger than the mammalian mtDNA, yet it only contains approximately 50% more genes; (v) plant mtDNA has kept the standard genetic code, and it has a low divergence rate with respect to point mutations, but a high recombinatorial activity; (vi) mitochondrial mRNA maturation includes a uniquely complex set of activities for processing, splicing and editing (at hundreds of sites); (vii) recombination in mtDNA creates novel reading frames that can produce male sterility; and (viii) plant mitochondria have a large proteome with 2000-3000 different proteins containing many unique proteins such as 200-300 pentatricopeptide repeat proteins. We describe the present and fairly detailed picture of the structure and function of plant mitochondria and how the unique properties make their metabolism more flexible allowing them to be involved in many diverse processes in the plant cell, such as photosynthesis, photorespiration, CAM and C4 metabolism, heat production, temperature control, stress resistance mechanisms, programmed cell death and genomic evolution. However, it is still a challenge to understand how the regulation of metabolism and mtDNA expression works at the cellular level and how retrograde signaling from the mitochondria coordinates all those processes.
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Affiliation(s)
- Ian Max Møller
- Department of Molecular Biology and Genetics, Aarhus University, Forsøgsvej 1, DK-4200, Slagelse, Denmark
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Zhou H, Zhou Y, Zhai F, Wu T, Xie Y, Xu G, Foyer CH. Rice seedlings grown under high ammonia do not show enhanced defence responses. Food Energy Secur 2021. [DOI: 10.1002/fes3.331] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Affiliation(s)
- Heng Zhou
- College of Life Sciences Laboratory Center of Life Sciences Nanjing Agricultural University Nanjing210095China
| | - Ying Zhou
- College of Life Sciences Laboratory Center of Life Sciences Nanjing Agricultural University Nanjing210095China
| | - Fengchao Zhai
- College of Life Sciences Laboratory Center of Life Sciences Nanjing Agricultural University Nanjing210095China
| | - Ting Wu
- College of Life Sciences Laboratory Center of Life Sciences Nanjing Agricultural University Nanjing210095China
| | - Yanjie Xie
- College of Life Sciences Laboratory Center of Life Sciences Nanjing Agricultural University Nanjing210095China
| | - Guohua Xu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Plant Nutrition and Fertilization in Low‐Middle Reaches of the Yangtze River, Ministry of Agriculture Nanjing Agricultural University Nanjing210095China
| | - Christine H. Foyer
- School of Biosciences College of Life and Environmental Sciences University of Birmingham Edgbaston UK
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Fang G, Yang J, Sun T, Wang X, Li Y. Evidence that synergism between potassium and nitrate enhances the alleviation of ammonium toxicity in rice seedling roots. PLoS One 2021; 16:e0248796. [PMID: 34499661 PMCID: PMC8428561 DOI: 10.1371/journal.pone.0248796] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 08/23/2021] [Indexed: 11/29/2022] Open
Abstract
Ammonium toxicity in plants is considered a global phenomenon, but the primary mechanisms remain poorly characterized. Here, we show that although the addition of potassium or nitrate partially alleviated the inhibition of rice seedling root growth caused by ammonium toxicity, the combination of potassium and nitrate clearly improved the alleviation, probably via some synergistic mechanisms. The combined treatment with potassium and nitrate led to significantly improved alleviation effects on root biomass, root length, and embryonic crown root number. The aberrant cell morphology and the rhizosphere acidification level caused by ammonium toxicity, recovered only by the combined treatment. RNA sequencing analysis and weighted gene correlation network analysis (WGCNA) revealed that the transcriptional response generated from the combined treatment involved cellulose synthesis, auxin, and gibberellin metabolism. Our results point out that potassium and nitrate combined treatment effectively promotes cell wall formation in rice, and thus, effectively alleviates ammonium toxicity.
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Affiliation(s)
- Gen Fang
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Jing Yang
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Tong Sun
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Xiaoxin Wang
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Yangsheng Li
- State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
- * E-mail:
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38
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Kim JY, Song JT, Seo HS. Ammonium-mediated reduction in salicylic acid content and recovery of plant growth in Arabidopsis siz1 mutants is modulated by NDR1 and NPR1. PLANT SIGNALING & BEHAVIOR 2021; 16:1928819. [PMID: 33989128 PMCID: PMC8281091 DOI: 10.1080/15592324.2021.1928819] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 05/05/2021] [Accepted: 05/07/2021] [Indexed: 06/01/2023]
Abstract
The siz1 mutants exhibit high SA accumulation and consequently severe dwarfism. Although siz1 mutants exhibit growth recovery upon exogenous ammonium supply, the underlying mechanism remains unknown. Here, we investigated the effect of ammonium on SA level and plant growth in SA-accumulating mutants. The growth of siz1-2 and siz1-3 mutants was recovered to wild-type (WT) levels upon exogenous ammonium supply, but that of siz1-3 ndr1 (non-race-specific disease resistance 1) and siz1-3 npr1 (non-expressor of pathogenesis related gene 1) double mutants was unaffected. The SA level was decreased by exogenous ammonium application in siz1-3 ndr1, siz1-3 npr1, and siz1-3 mutants. The level of nitrate reductase (NR) was almost the same in all genotypes (WT, siz1-3, ndr1, npr1, siz1-3 ndr1, and siz1-3 npr1), regardless of the ammonium treatment, suggesting that exogenous ammonium supply to ndr1 siz1-3 and npr1 siz1-3 double mutants does not have any effect on their growth and NR levels, but decreases the SA level. Taken together, these results indicate that ammonium acts as a signaling molecule to regulate the SA amount, and NDR1 and NPR1 play a positive role in the ammonium-mediated growth recovery of siz1 mutants.
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Affiliation(s)
- Ju Yong Kim
- Department of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea
| | - Jong Tae Song
- Department of Applied Biosciences, Kyungpook National University, Daegu, Korea
| | - Hak Soo Seo
- Department of Agriculture, Forestry and Bioresources, Research Institute of Agriculture and Life Sciences, and Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea
- Bio-MAX Institute, Seoul National University, Seoul, Korea
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Hachiya T, Inaba J, Wakazaki M, Sato M, Toyooka K, Miyagi A, Kawai-Yamada M, Sugiura D, Nakagawa T, Kiba T, Gojon A, Sakakibara H. Excessive ammonium assimilation by plastidic glutamine synthetase causes ammonium toxicity in Arabidopsis thaliana. Nat Commun 2021; 12:4944. [PMID: 34400629 PMCID: PMC8367978 DOI: 10.1038/s41467-021-25238-7] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 07/29/2021] [Indexed: 01/09/2023] Open
Abstract
Plants use nitrate, ammonium, and organic nitrogen in the soil as nitrogen sources. Since the elevated CO2 environment predicted for the near future will reduce nitrate utilization by C3 species, ammonium is attracting great interest. However, abundant ammonium nutrition impairs growth, i.e., ammonium toxicity, the primary cause of which remains to be determined. Here, we show that ammonium assimilation by GLUTAMINE SYNTHETASE 2 (GLN2) localized in the plastid rather than ammonium accumulation is a primary cause for toxicity, which challenges the textbook knowledge. With exposure to toxic levels of ammonium, the shoot GLN2 reaction produced an abundance of protons within cells, thereby elevating shoot acidity and stimulating expression of acidic stress-responsive genes. Application of an alkaline ammonia solution to the ammonium medium efficiently alleviated the ammonium toxicity with a concomitant reduction in shoot acidity. Consequently, we conclude that a primary cause of ammonium toxicity is acidic stress.
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Affiliation(s)
- Takushi Hachiya
- Department of Molecular and Functional Genomics, Interdisciplinary Center for Science Research, Shimane University, Matsue, Japan. .,Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan. .,Institute for Advanced Research, Nagoya University, Nagoya, Aichi, Japan.
| | - Jun Inaba
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Mayumi Wakazaki
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Mayuko Sato
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Kiminori Toyooka
- RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Atsuko Miyagi
- Graduate School of Science and Engineering, Saitama University, Saitama, Saitama, Japan
| | - Maki Kawai-Yamada
- Graduate School of Science and Engineering, Saitama University, Saitama, Saitama, Japan
| | - Daisuke Sugiura
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan
| | - Tsuyoshi Nakagawa
- Department of Molecular and Functional Genomics, Interdisciplinary Center for Science Research, Shimane University, Matsue, Japan
| | - Takatoshi Kiba
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan.,RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Alain Gojon
- Biochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro-M/Montpellier University, Montpellier, France
| | - Hitoshi Sakakibara
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan.,RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
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40
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Zhu Y, Qi B, Hao Y, Liu H, Sun G, Chen R, Song S. Appropriate NH 4 +/NO 3 - Ratio Triggers Plant Growth and Nutrient Uptake of Flowering Chinese Cabbage by Optimizing the pH Value of Nutrient Solution. FRONTIERS IN PLANT SCIENCE 2021; 12:656144. [PMID: 33995453 PMCID: PMC8121088 DOI: 10.3389/fpls.2021.656144] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 03/31/2021] [Indexed: 06/12/2023]
Abstract
Compared with sole nitrogen (N), the nutrition mixture of ammonium (NH4 +) and nitrate (NO3 -) is known to better improve crop yield and quality. However, the mechanism underlying this improvement remains unclear. In the present study, we analyzed the changes in nutrient solution composition, content of different N forms in plant tissues and exudates, and expression of plasma membrane (PM) H+-ATPase genes (HAs) under different NH4 +/NO3 - ratios (0/100, 10/90, 25/75, 50/50 as control, T1, T2, and T3) in flowering Chinese cabbage. We observed that compared with the control, T1 and T2 increased the economical yield of flowering Chinese cabbage by 1.26- and 1.54-fold, respectively, whereas T3 significantly reduced plant yield. Compared with the control, T1-T3 significantly reduced the NO3 - content and increased the NH4 +, amino acid, and soluble protein contents of flowering Chinese cabbage to varying extents. T2 significantly increased the N use efficiency (NUE), whereas T3 significantly decreased it to only being 70.25% of that of the control. Owing to the difference in N absorption and utilization among seedlings, the pH value of the nutrient solution differed under different NH4 +/NO3 - ratios. At harvest, the pH value of T2 was 5.8; in the control and T1, it was approximately 8.0, and in T3 it was only 3.6. We speculated that appropriate NH4 +/NO3 - ratios may improve N absorption and assimilation and thus promote the growth of flowering Chinese cabbage, owing to the suitable pH value. On the contrary, addition of excessive NH4 + may induce rhizosphere acidification and ammonia toxicity, causing plant growth inhibition. We further analyzed the transcription of PM H+-ATPase genes (HAs). HA1 and HA7 transcription in roots was significantly down-regulated by the addition of the mixture of NH4 + and NO3 -, whereas the transcription of HA2, HA9 in roots and HA7, HA8, and HA10 in leaves was sharply up-regulated by the addition of the mixture; the transcription of HA3 was mainly enhanced by the highest ratio of NH4 +/NO3 -. Our results provide valuable information about the effects of treatments with different NH4 +/NO3 - ratios on plant growth and N uptake and utilization.
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Affiliation(s)
- Yunna Zhu
- College of Horticulture, South China Agricultural University, Guangzhou, China
- Henry Fok College of Biology and Agriculture, Shaoguan University, Shaoguan, China
| | - Baifu Qi
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Yanwei Hao
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Houcheng Liu
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Guangwen Sun
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Riyuan Chen
- College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Shiwei Song
- College of Horticulture, South China Agricultural University, Guangzhou, China
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Lv X, Ding Y, Long M, Liang W, Gu X, Liu Y, Wen X. Effect of Foliar Application of Various Nitrogen Forms on Starch Accumulation and Grain Filling of Wheat ( Triticum aestivum L.) Under Drought Stress. FRONTIERS IN PLANT SCIENCE 2021; 12:645379. [PMID: 33841473 PMCID: PMC8030621 DOI: 10.3389/fpls.2021.645379] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 03/01/2021] [Indexed: 06/12/2023]
Abstract
Foliar nitrogen (N) fertilizer application at later stages of wheat (Triticum aestivum L.) growth is an effective method of attenuating drought stress and improving grain filling. The influences or modes of action of foliar application of various nitrogen forms on wheat growth and grain filling need further research. The objective of this study was to examine the regulatory effects of various forms of foliar nitrogen [NO3 -, NH4 +, and CO(NH2)2] on wheat grain filling under drought stress and to elucidate their underlying mechanisms. The relative effects of each nitrogen source differed in promoting grain filling. Foliar NH4 +-N application notably prolonged the grain filling period. In contrast, foliar application of CO(NH2)2 and NO3 --N accelerated the grain filling rate and regulated levels of abscisic acid (ABA), z-riboside (ZR), and ethylene (ETH) in wheat grains. Analysis of gene expression revealed that CO(NH2)2 and NO3 --N upregulated the genes involved in the sucrose-starch conversion pathway, promoting the remobilization of carbohydrates and starch synthesis in the grains. Besides, activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) were increased, whereas the content of malondialdehyde (MDA) declined under foliar nitrogen application (especially NH4 +-N). Under drought stress, enhancement of carbohydrate remobilization and sink strength became key factors in grain filling, and the relative differences in the effects of three N forms became more evident. In conclusion, NH4 +-N application improved the antioxidant enzyme system and delayed photoassimilate transportation. On the other hand, foliar applications of NO3 --N and CO(NH2)2 enhanced sink capacity and alleviated drought stress injury in wheat.
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42
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Yang S, Zhang J, Chen L. Growth and physiological responses of Pennisetum sp. to cadmium stress under three different soils. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:14867-14881. [PMID: 33222062 DOI: 10.1007/s11356-020-11701-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 11/16/2020] [Indexed: 05/22/2023]
Abstract
Pennisetum sp. was employed as a model species to detect the growth and physiological response to cadmium (Cd) stress at different Cd concentrations (0, 20, 50, and 100 mg kg-1) in three types of soils (yellow brown soil, yellow soil, and red soil). Results showed that the growth of Pennisetum sp. was not significantly influenced by Cd in 20 mg kg-1, but significantly inhibited at higher Cd concentrations in three types of soils. Besides, the higher Cd concentrations, the lower root, stem, and leaf biomass. With Cd concentration of soil increasing, Cd content of root, stem, and leaf increased. Compared with no Cd, high Cd concentrations (50 and 100 mg kg-1) induced the physiological indices (photosynthetic rate, stomatal conductance, transpiration rate) and biochemical indices (nitrate reductase, glutamine synthetase, and glutamate synthase activities) decreasing, but the concentration of NO3- and NH4+ increasing. The activity of antioxidative enzymes (SOD, POD, and CAT) was disrupted and the content of malondialdehyde (MDA) increasing. Pennisetum sp. could protect cells from damage and maintain normal physiological metabolism via increasing the production of soluble sugar and soluble protein, but soluble proteins and soluble sugars were limited in high concentrations of Cd (50 and 100 mg kg-1). Moreover, the growth and physiological response to Cd are different in the three types of soils. The growth of Pennisetum sp. in yellow brown soil was better than that in other two soils, and the gas exchange rate, antioxidant enzyme activity, and nitrogen metabolism in yellow soil and red soil were more affected by Cd stress than that in yellow brown soil. Overall, Pennisetum sp. had certain tolerance and biosorption ability to Cd in different Cd concentrations and different types of soil. Hence, Pennisetum sp. was a suitable choice for Cd remediation, especially in yellow brown soil.
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Affiliation(s)
- Senlin Yang
- Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province & National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Rainy Area of West China Plantation Ecosystem Permanent Scientific Research Base, Institute of Ecology & Forestry, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jian Zhang
- Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province & National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Rainy Area of West China Plantation Ecosystem Permanent Scientific Research Base, Institute of Ecology & Forestry, Sichuan Agricultural University, Chengdu, 611130, China
| | - Lianghua Chen
- Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province & National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River & Rainy Area of West China Plantation Ecosystem Permanent Scientific Research Base, Institute of Ecology & Forestry, Sichuan Agricultural University, Chengdu, 611130, China.
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Identification and Characterization of the APX Gene Family and Its Expression Pattern under Phytohormone Treatment and Abiotic Stress in Populus trichocarpa. Genes (Basel) 2021; 12:genes12030334. [PMID: 33668872 PMCID: PMC7996185 DOI: 10.3390/genes12030334] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/19/2021] [Accepted: 02/22/2021] [Indexed: 02/07/2023] Open
Abstract
Ascorbate peroxidase (APX) is a member of class I of the heme-containing peroxidase family. The enzyme plays important roles in scavenging reactive oxygen species for protection against oxidative damage and maintaining normal plant growth and development, as well as in biotic stress responses. In this study, we identified 11 APX genes in the Populus trichocarpa genome using bioinformatic methods. Phylogenetic analysis revealed that the PtrAPX proteins were classifiable into three clades and the members of each clade shared similar gene structures and motifs. The PtrAPX genes were distributed on six chromosomes and four segmental-duplicated gene pairs were identified. Promoter cis-elements analysis showed that the majority of PtrAPX genes contained a variety of phytohormone- and abiotic stress-related cis-elements. Tissue-specific expression profiles indicated that the PtrAPX genes primarily function in roots and leaves. Real-time quantitative PCR (RT-qPCR) analysis indicated that PtrAPX transcription was induced in response to drought, salinity, high ammonium concentration, and exogenous abscisic acid treatment. These results provide important information on the phylogenetic relationships and functions of the APX gene family in P. trichocarpa.
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Zarattini M, Farjad M, Launay A, Cannella D, Soulié MC, Bernacchia G, Fagard M. Every cloud has a silver lining: how abiotic stresses affect gene expression in plant-pathogen interactions. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:1020-1033. [PMID: 33188434 PMCID: PMC7904152 DOI: 10.1093/jxb/eraa531] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Accepted: 11/10/2020] [Indexed: 05/03/2023]
Abstract
Current environmental and climate changes are having a pronounced influence on the outcome of plant-pathogen interactions, further highlighting the fact that abiotic stresses strongly affect biotic interactions at various levels. For instance, physiological parameters such as plant architecture and tissue organization together with primary and specialized metabolism are affected by environmental constraints, and these combine to make an individual plant either a more or less suitable host for a given pathogen. In addition, abiotic stresses can affect the timely expression of plant defense and pathogen virulence. Indeed, several studies have shown that variations in temperature, and in water and mineral nutrient availability affect the expression of plant defense genes. The expression of virulence genes, known to be crucial for disease outbreak, is also affected by environmental conditions, potentially modifying existing pathosystems and paving the way for emerging pathogens. In this review, we summarize our current knowledge on the impact of abiotic stress on biotic interactions at the transcriptional level in both the plant and the pathogen side of the interaction. We also perform a metadata analysis of four different combinations of abiotic and biotic stresses, which identifies 197 common modulated genes with strong enrichment in Gene Ontology terms related to defense . We also describe the multistress-specific responses of selected defense-related genes.
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Affiliation(s)
- Marco Zarattini
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
- PhotoBioCatalysis Unit – Crop Production and Biostimulation Lab (CPBL), Interfaculty School of Bioengineers, Université Libre de Bruxelles (ULB), CP150, Avenue F.D. Roosevelt 50, Brussels, Belgium
| | - Mahsa Farjad
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - Alban Launay
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
| | - David Cannella
- PhotoBioCatalysis Unit – Crop Production and Biostimulation Lab (CPBL), Interfaculty School of Bioengineers, Université Libre de Bruxelles (ULB), CP150, Avenue F.D. Roosevelt 50, Brussels, Belgium
| | - Marie-Christine Soulié
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
- Sorbonne Universités, UPMC Univ. Paris 06, UFR 927, 4 place Jussieu, Paris, France
| | - Giovanni Bernacchia
- Department of Life Sciences and Biotechnology, University of Ferrara, Via Borsari 46, Ferrara, Italy
| | - Mathilde Fagard
- Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, Versailles, France
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González-Moro MB, González-Moro I, de la Peña M, Estavillo JM, Aparicio-Tejo PM, Marino D, González-Murua C, Vega-Mas I. A Multi-Species Analysis Defines Anaplerotic Enzymes and Amides as Metabolic Markers for Ammonium Nutrition. FRONTIERS IN PLANT SCIENCE 2021; 11:632285. [PMID: 33584765 PMCID: PMC7873483 DOI: 10.3389/fpls.2020.632285] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 12/21/2020] [Indexed: 05/09/2023]
Abstract
Nitrate and ammonium are the main nitrogen sources in agricultural soils. In the last decade, ammonium (NH4 +), a double-sided metabolite, has attracted considerable attention by researchers. Its ubiquitous presence in plant metabolism and its metabolic energy economy for being assimilated contrast with its toxicity when present in high amounts in the external medium. Plant species can adopt different strategies to maintain NH4 + homeostasis, as the maximization of its compartmentalization and assimilation in organic compounds, primarily as amino acids and proteins. In the present study, we report an integrative metabolic response to ammonium nutrition of seven plant species, belonging to four different families: Gramineae (ryegrass, wheat, Brachypodium distachyon), Leguminosae (clover), Solanaceae (tomato), and Brassicaceae (oilseed rape, Arabidopsis thaliana). We use principal component analysis (PCA) and correlations among metabolic and biochemical data from 40 experimental conditions to understand the whole-plant response. The nature of main amino acids is analyzed among species, under the hypothesis that those Asn-accumulating species will show a better response to ammonium nutrition. Given the provision of carbon (C) skeletons is crucial for promotion of the nitrogen assimilation, the role of different anaplerotic enzymes is discussed in relation to ammonium nutrition at a whole-plant level. Among these enzymes, isocitrate dehydrogenase (ICDH) shows to be a good candidate to increase nitrogen assimilation in plants. Overall, metabolic adaptation of different carbon anaplerotic activities is linked with the preference to synthesize Asn or Gln in their organs. Lastly, glutamate dehydrogenase (GDH) reveals as an important enzyme to surpass C limitation during ammonium assimilation in roots, with a disparate collaboration of glutamine synthetase (GS).
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Affiliation(s)
| | - Itziar González-Moro
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - Marlon de la Peña
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - José María Estavillo
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - Pedro M. Aparicio-Tejo
- Instituto Multidisciplinar de Biología Aplicada (IMAB), Universidad Pública de Navarra, Pamplona, Spain
| | - Daniel Marino
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
- Ikerbasque, Basque Foundation for Science, Bilbao, Spain
| | - Carmen González-Murua
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
| | - Izargi Vega-Mas
- Department of Plant Biology and Ecology, University of the Basque Country (UPV/EHU), Bilbao, Spain
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Dmitrović S, Dragićević M, Savić J, Milutinović M, Živković S, Maksimović V, Matekalo D, Perišić M, Mišić D. Antagonistic Interaction between Phosphinothricin and Nepeta rtanjensis Essential Oil Affected Ammonium Metabolism and Antioxidant Defense of Arabidopsis Grown In Vitro. PLANTS 2021; 10:plants10010142. [PMID: 33445496 PMCID: PMC7828019 DOI: 10.3390/plants10010142] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Revised: 01/08/2021] [Accepted: 01/09/2021] [Indexed: 11/17/2022]
Abstract
Phosphinothricin (PPT) is one of the most widely used herbicides. PTT targets glutamine synthetase (GS) activity in plants, and its phytotoxicity is ascribed to ammonium accumulation and reactive oxygen species bursts, which drives rapid lipid peroxidation of cell membranes. In agricultural fields, PPT is extensively sprayed on plant foliage; however, a portion of the herbicide reaches the soil. According to the present study, PPT absorbed via roots can be phytotoxic to Arabidopsis, inducing more adverse effects in roots than in shoots. Alterations in plant physiology caused by 10 days exposure to herbicide via roots are reflected through growth suppression, reduced chlorophyll content, perturbations in the sugar and organic acid metabolism, modifications in the activities and abundances of GS, catalase, peroxidase, and superoxide dismutase. Antagonistic interaction of Nepeta rtanjensis essential oil (NrEO) and PPT, emphasizes the existence of complex control mechanisms at the transcriptional and posttranslational level, which result in the mitigation of PPT-induced ammonium toxicity and in providing more efficient antioxidant defense of plants. Simultaneous application of the two agents in the field cannot be recommended; however, NrEO might be considered as the PPT post-treatment for reducing harmful effects of herbicide residues in the soil on non-target plants.
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Affiliation(s)
- Slavica Dmitrović
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
- Correspondence: (S.D.); (D.M.); Tel.: +381112078385 (D.M.)
| | - Milan Dragićević
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
| | - Jelena Savić
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
| | - Milica Milutinović
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
| | - Suzana Živković
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
| | - Vuk Maksimović
- Institute for Multidisciplinary Research, University of Belgrade, Kneza Višeslava 1, 11030 Belgrade, Serbia;
| | - Dragana Matekalo
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
| | - Mirjana Perišić
- Institute of Physics Belgrade—National Institute of the Republic of Serbia, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia;
| | - Danijela Mišić
- Institute for Biological Research ‘‘Siniša Stanković”—National Institute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11060 Belgrade, Serbia; (M.D.); (J.S.); (M.M.); (S.Ž.); (D.M.)
- Correspondence: (S.D.); (D.M.); Tel.: +381112078385 (D.M.)
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Tian J, Pang Y, Zhao Z. Drought, Salinity, and Low Nitrogen Differentially Affect the Growth and Nitrogen Metabolism of Sophora japonica (L.) in a Semi-Hydroponic Phenotyping Platform. FRONTIERS IN PLANT SCIENCE 2021; 12:715456. [PMID: 34671370 PMCID: PMC8522681 DOI: 10.3389/fpls.2021.715456] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 09/10/2021] [Indexed: 05/11/2023]
Abstract
Abiotic stresses, such as salinity, drought, and nutrient deficiency adversely affect nitrogen (N) uptake and assimilation in plants. However, the regulation of N metabolism and N pathway genes in Sophora japonica under abiotic stresses is unclear. Sophora japonica seedlings were subjected to drought (5% polyethylene glycol 6,000), salinity (75mM NaCl), or low N (0.01mM NH4NO3) for 3weeks in a semi-hydroponic phenotyping platform. Salinity and low N negatively affected plant growth, while drought promoted root growth and inhibited aboveground growth. The NH4 +/NO3 - ratio increased under all three treatments with the exception of a reduction in leaves under salinity. Drought significantly increased leaf NO2 - concentrations. Nitrate reductase (NR) activity was unaltered or increased under stresses with the exception of a reduction in leaves under salinity. Drought enhanced ammonium assimilation with increased glutamate synthase (GOGAT) activity, although glutamine synthetase (GS) activity remained unchanged, whereas salinity and low N inhibited ammonium assimilation with decreased GS activity under salt stress and decreased GOGAT activity under low N treatment. Glutamate dehydrogenase (GDH) activity also changed dramatically under different stresses. Additionally, expression changes of genes involved in N reduction and assimilation were generally consistent with related enzyme activities. In roots, ammonium transporters, especially SjAMT1.1 and SjAMT2.1a, showed higher transcription under all three stresses; however, most nitrate transporters (NRTs) were upregulated under salinity but unchanged under drought. SjNRT2.4, SjNRT2.5, and SjNRT3.1 were highly induced by low N. These results indicate that N uptake and metabolism processes respond differently to drought, salinity, and low N conditions in S. japonica seedlings, possibly playing key roles in plant resistance to environmental stress.
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Affiliation(s)
- Jing Tian
- College of Forestry, Northwest A&F University, Yangling, China
- Research Center for the Conservation and Breeding Engineering of Ancient Trees, Yangling, China
- Key Comprehensive Laboratory of Forestry, Yangling, China
| | - Yue Pang
- College of Forestry, Northwest A&F University, Yangling, China
| | - Zhong Zhao
- College of Forestry, Northwest A&F University, Yangling, China
- Research Center for the Conservation and Breeding Engineering of Ancient Trees, Yangling, China
- Key Comprehensive Laboratory of Forestry, Yangling, China
- *Correspondence: Zhong Zhao, ;
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Soulie M, Koka SM, Floch K, Vancostenoble B, Barbe D, Daviere A, Soubigou‐Taconnat L, Brunaud V, Poussereau N, Loisel E, Devallee A, Expert D, Fagard M. Plant nitrogen supply affects the Botrytis cinerea infection process and modulates known and novel virulence factors. MOLECULAR PLANT PATHOLOGY 2020; 21:1436-1450. [PMID: 32939948 PMCID: PMC7549004 DOI: 10.1111/mpp.12984] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Revised: 06/25/2020] [Accepted: 07/28/2020] [Indexed: 05/05/2023]
Abstract
Plant nitrogen (N) fertilization is known to affect disease; however, the underlying mechanisms remain mostly unknown. We investigated the impact of N supply on the Arabidopsis thaliana-Botrytis cinerea interaction. A. thaliana plants grown in low nitrate were more tolerant to all wild-type B. cinerea strains tested. We determined leaf nitrate concentrations and showed that they had a limited impact on B. cinerea growth in vitro. For the first time, we performed a dual RNA-Seq of infected leaves of plants grown with different nitrate concentrations. Transcriptome analysis showed that plant and fungal transcriptomes were marginally affected by plant nitrate supply. Indeed, only a limited set of plant (182) and fungal (22) genes displayed expression profiles altered by nitrate supply. The expression of selected genes was confirmed by quantitative reverse transcription PCR at 6 hr postinfection (hpi) and analysed at a later time point (24 hpi). We selected three of the 22 B. cinerea genes identified for further analysis. B. cinerea mutants affected in these genes were less aggressive than the wild-type strain. We also showed that plants grown in ammonium were more tolerant to B. cinerea. Furthermore, expression of the selected B. cinerea genes in planta was altered when plants were grown with ammonium instead of nitrate, demonstrating an impact of the nature of N supplied to plants on the interaction. Identification of B. cinerea genes expressed differentially in planta according to plant N supply unveils two novel virulence functions required for full virulence in A. thaliana: a secondary metabolite (SM) and an acidic protease (AP).
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Affiliation(s)
- Marie‐Christine Soulie
- Sorbonne UniversitésUPMC Université Paris 06ParisFrance
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
| | | | - Kévin Floch
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
| | | | - Deborah Barbe
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
| | - Antoine Daviere
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
| | - Ludivine Soubigou‐Taconnat
- Institute of Plant Sciences Paris‐SaclayCNRSINRAUniversité Paris‐SudUniversité d'EvryUniversité Paris‐SaclayGif sur YvetteFrance
- Institute of Plant Sciences Paris‐SaclayCNRSINRA Université Paris‐DiderotSorbonne Paris‐CitéGif sur YvetteFrance
| | - Veronique Brunaud
- Institute of Plant Sciences Paris‐SaclayCNRSINRAUniversité Paris‐SudUniversité d'EvryUniversité Paris‐SaclayGif sur YvetteFrance
- Institute of Plant Sciences Paris‐SaclayCNRSINRA Université Paris‐DiderotSorbonne Paris‐CitéGif sur YvetteFrance
| | | | - Elise Loisel
- Univ LyonUniversité Lyon 1CNRSBayer SAS, UMR5240, PathogénieLyonFrance
| | - Amelie Devallee
- Univ LyonUniversité Lyon 1CNRSBayer SAS, UMR5240, PathogénieLyonFrance
| | - Dominique Expert
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
| | - Mathilde Fagard
- Institut Jean‐Pierre BourginINRAEUniversité Paris‐SaclayVersaillesFrance
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Combined Transcriptome and Proteome Analysis of Masson Pine ( Pinus massoniana Lamb.) Seedling Root in Response to Nitrate and Ammonium Supplementations. Int J Mol Sci 2020; 21:ijms21207548. [PMID: 33066140 PMCID: PMC7593940 DOI: 10.3390/ijms21207548] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 10/05/2020] [Accepted: 10/08/2020] [Indexed: 11/25/2022] Open
Abstract
Nitrogen (N) is an essential nutrient for plant growth and development. Plant species respond to N fluctuations and N sources, i.e., ammonium or nitrate, differently. Masson pine (Pinus massoniana Lamb.) is one of the pioneer plants in the southern forests of China. It shows better growth when grown in medium containing ammonium as compared to nitrate. In this study, we had grown masson pine seedlings in medium containing ammonium, nitrate, and a mixture of both, and performed comparative transcriptome and proteome analyses to observe the differential signatures. Our transcriptome and proteome resulted in the identification of 1593 and 71 differentially expressed genes and proteins, respectively. Overall, the masson pine roots had better performance when fed with a mixture of ammonium and nitrate. The transcriptomic and proteomics results combined with the root morphological responses suggest that when ammonium is supplied as a sole N-source to masson pine seedlings, the expression of ammonium transporters and other non-specific NH4+-channels increased, resulting in higher NH4+ concentrations. This stimulates lateral roots branching as evidenced from increased number of root tips. We discussed the root performance in association with ethylene responsive transcription factors, WRKYs, and MADS-box transcription factors. The differential analysis data suggest that the adaptability of roots to ammonium is possibly through the promotion of TCA cycle, owing to the higher expression of malate synthase and malate dehydrogenase. Masson pine seedlings managed the increased NH4+ influx by rerouting N resources to asparagine production. Additionally, flavonoid biosynthesis and flavone and flavonol biosynthesis pathways were differentially regulated in response to increased ammonium influx. Finally, changes in the glutathione s-transferase genes suggested the role of glutathione cycle in scavenging the possible stress induced by excess NH4+. These results demonstrate that masson pine shows increased growth when grown under ammonium by increased N assimilation. Furthermore, it can tolerate high NH4+ content by involving asparagine biosynthesis and glutathione cycle.
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50
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Affiliation(s)
- Hans Motte
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
- VIB-UGent for Plant Systems Biology, Ghent, Belgium.
| | - Tom Beeckman
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.
- VIB-UGent for Plant Systems Biology, Ghent, Belgium.
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