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Lepinay C, Větrovský T, Chytrý M, Dřevojan P, Fajmon K, Cajthaml T, Kohout P, Baldrian P. Effect of plant communities on bacterial and fungal communities in a Central European grassland. ENVIRONMENTAL MICROBIOME 2024; 19:42. [PMID: 38902816 PMCID: PMC11188233 DOI: 10.1186/s40793-024-00583-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Accepted: 06/07/2024] [Indexed: 06/22/2024]
Abstract
BACKGROUND Grasslands provide fundamental ecosystem services that are supported by their plant diversity. However, the importance of plant taxonomic diversity for the diversity of other taxa in grasslands remains poorly understood. Here, we studied the associations between plant communities, soil chemistry and soil microbiome in a wooded meadow of Čertoryje (White Carpathians, Czech Republic), a European hotspot of plant species diversity. RESULTS High plant diversity was associated with treeless grassland areas with high primary productivity and high contents of soil nitrogen and organic carbon. In contrast, low plant diversity occurred in grasslands near solitary trees and forest edges. Fungal communities differed between low-diversity and high-diversity grasslands more strongly than bacterial communities, while the difference in arbuscular mycorrhizal fungi (AMF) depended on their location in soil versus plant roots. Compared to grasslands with low plant diversity, high-diversity plant communities had a higher diversity of fungi including soil AMF, a different fungal and soil AMF community composition and higher bacterial and soil AMF biomass. Root AMF composition differed only slightly between grasslands with low and high plant diversity. Trees dominated the belowground plant community in low-diversity grasslands, which influenced microbial diversity and composition. CONCLUSIONS The determinants of microbiome abundance and composition in grasslands are complex. Soil chemistry mainly influenced bacterial communities, while plant community type mainly affected fungal (including AMF) communities. Further studies on the functional roles of microbial communities are needed to understand plant-soil-microbe interactions and their involvement in grassland ecosystem services.
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Affiliation(s)
- Clémentine Lepinay
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague 4, Czech Republic.
| | - Tomáš Větrovský
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague 4, Czech Republic
| | - Milan Chytrý
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 61137, Brno, Czech Republic
| | - Pavel Dřevojan
- Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 61137, Brno, Czech Republic
| | - Karel Fajmon
- Regional Office Protected Landscape Area Bílé Karpaty, Nature Conservation Agency of the Czech Republic, Nádražní 318, 763 26, Luhačovice, Czech Republic
| | - Tomáš Cajthaml
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague 4, Czech Republic
| | - Petr Kohout
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague 4, Czech Republic
| | - Petr Baldrian
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague 4, Czech Republic
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Neuberger P, Romero C, Kim K, Hao X, A McAllister T, Ngo S, Li C, Gorzelak MA. Biochar is colonized by select arbuscular mycorrhizal fungi in agricultural soils. MYCORRHIZA 2024; 34:191-201. [PMID: 38758247 PMCID: PMC11166811 DOI: 10.1007/s00572-024-01149-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 04/16/2024] [Indexed: 05/18/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) colonize biochar in soils, yet the processes governing their colonization and growth in biochar are not well characterized. Biochar amendment improves soil health by increasing soil carbon, decreasing bulk density, and improving soil water retention, all of which can increase yield and alleviate environmental stress on crops. Biochar is often applied with nutrient addition, impacting mycorrhizal communities. To understand how mycorrhizas explore soils containing biochar, we buried packets of non-activated biochar in root exclusion mesh bags in contrasting agricultural soils. In this greenhouse experiment, with quinoa (Chenopodium quinoa) as the host plant, we tested impacts of mineral nutrient (as manure and fertilizer) and biochar addition on mycorrhizal colonization of biochar. Paraglomus appeared to dominate the biochar packets, and the community of AMF found in the biochar was a subset (12 of 18) of the virtual taxa detected in soil communities. We saw differences in AMF community composition between soils with different edaphic properties, and while nutrient addition shifted those communities, the shifts were inconsistent between soil types and did not significantly influence the observation that Paraglomus appeared to selectively colonize biochar. This observation may reflect differences in AMF traits, with Paraglomus previously identified only in soils (not in roots) pointing to predominately soil exploratory traits. Conversely, the absence of some AMF from the biochar implies either a reduced tendency to explore soils or an ability to avoid recalcitrant nutrient sources. Our results point to a selective colonization of biochar in agricultural soils.
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Affiliation(s)
- Patrick Neuberger
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
| | - Carlos Romero
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
- Department of Chemistry and Biochemistry, University of Lethbridge, 4401 University Dr W, Lethbridge, AB, T1K 3M4, Canada
| | - Keunbae Kim
- Division Forest, Nature and Landscape, KU Leuven Campus Geel, Geel, Belgium
| | - Xiying Hao
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
| | - Tim A McAllister
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
| | - Skyler Ngo
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
| | - Chunli Li
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada
| | - Monika A Gorzelak
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 - 1st Ave. S, Lethbridge, AB, T1J 4B1, Canada.
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3
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Gao Y, An T, Kuang Q, Wu Y, Liu S, Liang L, Yu M, Macrae A, Chen Y. The role of arbuscular mycorrhizal fungi in the alleviation of cadmium stress in cereals: A multilevel meta-analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 902:166091. [PMID: 37553055 DOI: 10.1016/j.scitotenv.2023.166091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 07/13/2023] [Accepted: 08/04/2023] [Indexed: 08/10/2023]
Abstract
The symbiotic relationships between crop species and arbuscular mycorrhizal fungi (AMF) are crucial for plant health, productivity, and environmental sustainability. The roles of AMF in reducing crop stress caused by cadmium (Cd) toxicity and in the remediation of Cd-contaminated soil are not fully understood. Here we report on a meta-analysis that sought to identify the functions of AMF in cereals under Cd stress. A total of 54 articles published between January 1992 and September 2022 were used to create the dataset, which provided 7216 data sets on mycorrhizal cereals under Cd stress examined. AMF effects on colonization rate, biomass, physiological level, nutritional level, and plant Cd level were measured using the logarithmic response ratio (Ln R). The results showed that AMF overall greatly reduced 5.14 - 33.6 % Cd stress on cereals in greenhouse experiments under controlled conditions. AMF colonization significantly stimulated crop biomass by 65.7 %, boosted the formation of photosynthetic pigments (23.2 %), and greatly increased plant nitrogen (24.8 %) and phosphorus (58.4 %) uptake. The dilution effect of mycorrhizal plants made the Cd concentration decline by 25.2 % in AMF plants compared to non-mycorrhizal ones. AMF also alleviated Cd stress by improving osmotic regulators (soluble protein, sugar, and total proline, from 14.8 to 36.0 %) and lowering the membrane lipid peroxidation product (MDA, 12.9 %). Importantly, the results from the random forest and model selection analysis demonstrated that crop type, soil characteristics, chemical form, and Cd levels were the main factors determining the function of AMF in alleviating Cd stress. Additionally, there was a significant interaction between AMF colonization rate and Cd addition, but their interactive effect was less than the colonization rate alone. This meta-analysis demonstrated that AMF inoculation could be considered as a promising strategy for mitigation of Cd stress in cereals.
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Affiliation(s)
- Yamin Gao
- College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Tingting An
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China; College of Forestry, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Qiqiang Kuang
- College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yujie Wu
- College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Shuo Liu
- College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Liyan Liang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China; College of Forestry, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Min Yu
- International Research Center for Environmental Membrane Biology, and Department of Horticulture, Foshan University, Foshan 528000, China; The UWA Institute of Agriculture, and School of Agriculture and Environment, The University of Western Australia, Perth, WA 6001, Australia
| | - Andrew Macrae
- Universidade Federal do Rio de Janeiro, Programa Pós-Graduação de Biotecnologia Vegetal e Bioprocessos, Av. Prof. Rodolpho Paulo Rocco, s/n-Prédio do CCS-Bloco K, 2 Andar-Sala 032, Rio de Janeiro 21941-902, Brazil; Universidade Federal do Rio de Janeiro, Instituto de Microbiologia Paulo de Góes, Av. Prof. Rodolpho Paulo Rocco, s/n-Prédio do CCS-Bloco I, 1 Andar-Sala 047, Rio de Janeiro 21941-902, Brazil
| | - Yinglong Chen
- College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi 712100, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi 712100, China; The UWA Institute of Agriculture, and School of Agriculture and Environment, The University of Western Australia, Perth, WA 6001, Australia.
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4
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Noceto PA, Durney C, van Tuinen D, de Sousa J, Wipf D, Courty PE. Arbuscular mycorrhizal fungal communities differ in neighboring vineyards of different ages. MYCORRHIZA 2023; 33:241-248. [PMID: 37450046 DOI: 10.1007/s00572-023-01117-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/16/2023] [Indexed: 07/18/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are key organisms in viticultural ecosystems as they provide many ecosystem services to soils and plants. Data about AMF community dynamics over time are relatively scarce and at short time scales. Many factors such as the soil, climate, and agricultural practices could modify the dynamics and functions of microbial communities. However, the effects on microbial communities of plant phenology and changes in plant physiology over time largely have been overlooked. We analyzed the diversity of AMF in three geographically close vineyards with similar soil parameters for 2 years. The plots differed in grapevine age (11, 36, and 110 years), but had the same soil management practice (horse tillage). Diversity analyses revealed a difference in the composition of AMF communities between the soil and grapevine roots and among roots of grapevines of different ages. This underlines AMF adaptation to physiological changes in the host which can explain the development of different AMF communities. The dynamics of AMF communities can highlight their resilience to environmental changes and agricultural practices.
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Affiliation(s)
- Pierre-Antoine Noceto
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Célien Durney
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Diederik van Tuinen
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | | | - Daniel Wipf
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France
| | - Pierre-Emmanuel Courty
- Agroécologie, INRAE, Institut Agro, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
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5
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Liu S, Vasar M, Öpik M, Koorem K. Disturbance induces similar shifts in arbuscular mycorrhizal fungal communities from grassland and arable field soils. MYCORRHIZA 2023; 33:153-164. [PMID: 36930376 DOI: 10.1007/s00572-023-01108-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/23/2023] [Indexed: 06/08/2023]
Abstract
Anthropogenic disturbances play an increasingly important role in structuring the diversity and functioning of soil organisms such as arbuscular mycorrhizal (AM) fungi. Frequently, multiple land-use practices, which may represent disturbances for AM fungal communities, operate simultaneously in different habitats. It is not known, however, how previous land-use history and specific habitat type influence AM fungal community response to disturbances. We applied mechanical (cutting to stimulate tillage) and chemical (herbicide addition) disturbances to AM fungal communities from meadow and arable field soils. Our results indicated that AM fungal communities from meadows, which previously had experienced mowing, were more species rich than communities from fields that had experienced intensive land-use practices. There were no significant differences, however, in the responses to disturbance of the AM fungal communities from field and meadow soils. We expected mechanical disturbance to promote taxa from the family Glomeraceae which are expected to exhibit a ruderal life-history strategy; instead, the abundance of this family increased in response to chemical disturbance. Simultaneous application of mechanical disturbance and herbicide decreased only the abundance of Diversisporaceae. No AM fungal families increased in abundance when both mechanical and chemical disturbances were applied simultaneously, but all disturbances increased the abundance of culturable AM fungi. Our study demonstrates that although chemical and mechanical forms of disturbance favor different AM fungal families, existing information about family-level characteristics may not adequately characterize the life history strategies of AM fungus species.
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Affiliation(s)
- Siqiao Liu
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia.
| | - Martti Vasar
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
| | - Kadri Koorem
- Institute of Ecology and Earth Sciences, University of Tartu, 2 J. Liivi Street, 50409, Tartu, Estonia
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6
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Faghihinia M, Zou Y, Bai Y, Dudáš M, Marrs R, Staddon PL. Grazing Intensity Rather than Host Plant's Palatability Shapes the Community of Arbuscular Mycorrhizal Fungi in a Steppe Grassland. MICROBIAL ECOLOGY 2022; 84:1062-1071. [PMID: 34755197 DOI: 10.1007/s00248-021-01920-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 11/05/2021] [Indexed: 05/14/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) are the predominant type of mycorrhizal fungi in roots and rhizosphere soil of grass species worldwide. Grasslands are currently experiencing increasing grazing pressure, but it is not yet clear how grazing intensity and host plant grazing preference by large herbivores interact with soil- and root-associated AMF communities. Here, we tested whether the diversity and community composition of AMF in the roots and rhizosphere soil of two dominant perennial grasses, grazed differently by livestock, change in response to grazing intensity. We conducted a study in a long-term field experiment in which seven levels of field-manipulated grazing intensities were maintained for 13 years in a typical steppe grassland in northern China. We extracted DNA from the roots and rhizosphere soil of two dominant grasses, Leymus chinense (Trin.) Tzvel. and Stipa grandis P. Smirn, with contrasting grazing preference by sheep. AMF DNA from root and soil samples was then subjected to molecular analysis. Our results showed that AMF α-diversity (richness) at the virtual taxa (VT) level varied as a function of grazing intensity. Different VT showed completely different responses along the gradient, one increasing, one decreasing, and others showing no response. Glomeraceae was the most abundant AMF family along the grazing gradient, which fits well with the theory of disturbance tolerance of this group. In addition, sheep-grazing preference for host plants did not explain much of the variation in AMF α-diversity. However, the two grass species exhibited different AMF community composition in their roots and rhizosphere soils. Roots exhibited a lower α-diversity and higher β-diversity within the AMF community than soils. Overall, our results suggest that long-term grazing intensity might have changed the abundance of functionally diverse AMF taxa in favor of those with disturbance-tolerant traits. We suggest our results would be useful in informing the choice of mycorrhizal fungi indicator variables when assessing the impacts of grassland management choices on grassland ecosystem functioning.
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Affiliation(s)
- Maede Faghihinia
- Department of Health and Environmental Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, 215123, Jiangsu, China
- School of Environmental Sciences, University of Liverpool, Liverpool, L69 3GP, UK
| | - Yi Zou
- Department of Health and Environmental Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, 215123, Jiangsu, China.
| | - Yongfei Bai
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Martin Dudáš
- Institute of Microbiology, Academy of Sciences of the Czech Republic, Vídeňská 1083 Praha 4 - Krč, Prague, Czech Republic
| | - Rob Marrs
- School of Environmental Sciences, University of Liverpool, Liverpool, L69 3GP, UK
| | - Philip L Staddon
- Department of Health and Environmental Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, 215123, Jiangsu, China
- Countryside and Community Research Institute, University of Gloucestershire, Cheltenham, GL50 4AZ, UK
- School for Agriculture, Food and the Environment, Royal Agricultural University, Cirencester, GL7 6JS, UK
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7
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Phenol and Polyaromatic Hydrocarbons Are Stronger Drivers Than Host Plant Species in Shaping the Arbuscular Mycorrhizal Fungal Component of the Mycorrhizosphere. Int J Mol Sci 2022; 23:ijms232012585. [PMID: 36293448 PMCID: PMC9604154 DOI: 10.3390/ijms232012585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 10/10/2022] [Accepted: 10/17/2022] [Indexed: 11/30/2022] Open
Abstract
Changes in soil microbial communities in response to hydrocarbon pollution are critical indicators of disturbed ecosystem conditions. A core component of these communities that is functionally adjusted to the life-history traits of the host and environmental factors consists of arbuscular mycorrhizal fungi (AMF). AMF communities associated with Poa trivialis and Phragmites australis growing at a phenol and polynuclear aromatic hydrocarbon (PAH)-contaminated site and at an uncontaminated site were compared based on LSU rDNA sequencing. Dissimilarities in species composition and community structures indicated soil pollution as the main factor negatively affecting the AMF diversity. The AMF communities at the contaminated site were dominated by fungal generalists (Rhizophagus, Funneliformis, Claroideoglomus, Paraglomus) with wide ecological tolerance. At the control site, the AMF communities were characterized by higher taxonomic and functional diversity than those exposed to the contamination. The host plant identity was the main driver distinguishing the two AMF metacommunities. The AMF communities at the uncontaminated site were represented by Polonospora, Paraglomus, Oehlia, Nanoglomus, Rhizoglomus, Dominikia, and Microdominikia. Polonosporaceae and Paraglomeraceae were particularly dominant in the Ph. australis mycorrhizosphere. The high abundance of early diverging AMF could be due to the use of primers able to detect lineages such as Paraglomeracae that have not been recognized by previously used 18S rDNA primers.
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Suetsugu K, Okada H, Hirota SK, Suyama Y. Evolutionary history of mycorrhizal associations between Japanese Oxygyne (Thismiaceae) species and Glomeraceae fungi. THE NEW PHYTOLOGIST 2022; 235:836-841. [PMID: 35445414 DOI: 10.1111/nph.18163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 04/07/2022] [Indexed: 06/14/2023]
Affiliation(s)
- Kenji Suetsugu
- Department of Biology, Graduate School of Science, Kobe University, Kobe, 657-8501, Hyogo, Japan
| | - Hidehito Okada
- Department of Biology, Graduate School of Science, Kobe University, Kobe, 657-8501, Hyogo, Japan
| | - Shun K Hirota
- Field Science Center, Graduate School of Agricultural Science, Tohoku University, 232-3 Yomogida, Naruko-onsen, Osaki, Miyagi, 989-6711, Japan
| | - Yoshihisa Suyama
- Field Science Center, Graduate School of Agricultural Science, Tohoku University, 232-3 Yomogida, Naruko-onsen, Osaki, Miyagi, 989-6711, Japan
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Babalola BJ, Li J, Willing CE, Zheng Y, Wang YL, Gan HY, Li XC, Wang C, Adams CA, Gao C, Guo LD. Nitrogen fertilisation disrupts the temporal dynamics of arbuscular mycorrhizal fungal hyphae but not spore density and community composition in a wheat field. THE NEW PHYTOLOGIST 2022; 234:2057-2072. [PMID: 35179789 DOI: 10.1111/nph.18043] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 02/07/2022] [Indexed: 06/14/2023]
Abstract
Elucidating the temporal dynamics of arbuscular mycorrhizal (AM) fungi is critical for understanding their functions. Furthermore, research investigating the temporal dynamics of AM fungi in response to agricultural practices remains in its infancy. We investigated the effect of nitrogen fertilisation and watering reduction on the temporal dynamics of AM fungi, across the lifespan of wheat. Nitrogen fertilisation decreased AM fungal spore density (SD), extraradical hyphal density (ERHD), and intraradical colonisation rate (IRCR) in both watering conditions. Nitrogen fertilisation affected AM fungal community composition in soil but not in roots, regardless of watering conditions. The temporal analysis revealed that AM fungal ERHD and IRCR were higher under conventional watering and lower under reduced watering in March than in other growth stages at low (≤ 70 kg N ha-1 yr-1 ) but not at high (≥ 140) nitrogen fertilisation levels. AM fungal SD was lower in June than in other growth stages and community composition varied with plant development at all nitrogen fertilisation levels, regardless of watering conditions. This study demonstrates that high nitrogen fertilisation levels disrupt the temporal dynamics of AM fungal hyphal growth but not sporulation and community composition.
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Affiliation(s)
- Busayo Joshua Babalola
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Jing Li
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | | | - Yong Zheng
- Key Laboratory for Humid Subtropical Eco-geographical Processes of the Ministry of Education, Fujian Normal University, Fuzhou, 350007, China
| | - Yong-Long Wang
- Faculty of Biological Science and Technology, Baotou Teacher's College, Baotou, Inner Mongolia, 014030, China
| | - Hui-Yun Gan
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xing-Chun Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Cong Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Catharine A Adams
- Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, 94720-3102, USA
| | - Cheng Gao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Liang-Dong Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
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Kajihara KT, Egan CP, Swift SOI, Wall CB, Muir CD, Hynson NA. Core arbuscular mycorrhizal fungi are predicted by their high abundance-occupancy relationship while host-specific taxa are rare and geographically structured. THE NEW PHYTOLOGIST 2022; 234:1464-1476. [PMID: 35218016 DOI: 10.1111/nph.18058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 02/16/2022] [Indexed: 06/14/2023]
Abstract
Habitat restoration may depend on the recovery of plant microbial symbionts such as arbuscular mycorrhizal (AM) fungi, but this requires a better understanding of the rules that govern their community assembly. We examined the interactions of soil and host-associated AM fungal communities between remnant and restored patches of subtropical montane forests. While AM fungal richness did not differ between habitat types, community membership did and was influenced by geography, habitat and host. These differences were largely driven by rare host-specific AM fungi that displayed near-complete turnover between forest types, while core AM fungal taxa were highly abundant and ubiquitous. The bipartite networks in the remnant forest were more specialized and hosts more specific than in the restored forest. Host-associated AM fungal communities nested within soil communities in both habitats, but only significantly so in the restored forest. Our results provide evidence that restored and remnant forests harbour the same core fungal symbionts, while rare host-specific taxa differ, and that geography, host identity and taxonomic resolution strongly affect the observed distribution patterns of these fungi. We suggest that host-specific interactions with AM fungi, as well as spatial processes, should be explicitly considered to effectively re-establish target host and symbiont communities.
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Affiliation(s)
- Kacie T Kajihara
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
| | - Cameron P Egan
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
- Department of Biology, Okanagan College, 1000 KLO Road, Kelowna, BC, VIY 4X8, Canada
| | - Sean O I Swift
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
| | - Christopher B Wall
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
- Biological Sciences, University of California San Diego, 9500 Gilman Dr, La Jolla, CA, 92093, USA
| | - Christopher D Muir
- School of Life Sciences, University of Hawai'i at Mānoa, 2538 McCarthy Mall, Honolulu, HI, 96822, USA
| | - Nicole A Hynson
- Pacific Biosciences Research Center, University of Hawai'i at Mānoa, 1993 East-West Road, Honolulu, HI, 96822, USA
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Ambrosino ML, Velázquez MS, Ontivero E, Cabello MN, Lugo MA. Communities of Glomeromycota in the Argentine Arid Diagonal: An Approach from Their Ecological Role in Grassland Management and Use. Fungal Biol 2022. [DOI: 10.1007/978-3-031-12994-0_19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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12
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Thanni B, Merckx R, De Bauw P, Boeraeve M, Peeters G, Hauser S, Honnay O. Spatial variability and environmental drivers of cassava-arbuscular mycorrhiza fungi (AMF) associations across Southern Nigeria. MYCORRHIZA 2022; 32:1-13. [PMID: 34981190 PMCID: PMC8786768 DOI: 10.1007/s00572-021-01058-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 11/16/2021] [Indexed: 06/14/2023]
Abstract
Cassava, forming starch-rich, tuberous roots, is an important staple crop in smallholder farming systems in sub-Saharan Africa. Its relatively good tolerance to drought and nutrient-poor soils may be partly attributed to the crop's association with arbuscular mycorrhiza fungi (AMF). Yet insights into AMF-community composition and richness of cassava, and knowledge of its environmental drivers are still limited. Here, we sampled 60 cassava fields across three major cassava-growing agro-ecological zones in Nigeria and used a DNA meta-barcoding approach to quantify large-scale spatial variation and evaluate the effects of soil characteristics and common agricultural practices on AMF community composition, richness and Shannon diversity. We identified 515 AMF operational taxonomic units (OTUs), dominated by Glomus, with large variation across agro-ecological zones, and with soil pH explaining most of the variation in AMF community composition. High levels of soil available phosphorus reduced OTU richness without affecting Shannon diversity. Long fallow periods (> 5 years) reduced AMF richness compared with short fallows, whereas both zero tillage and tractor tillage reduced AMF diversity compared with hoe tillage. This study reveals that the symbiotic relationship between cassava and AMF is strongly influenced by soil characteristics and agricultural management and that it is possible to adjust cassava cultivation practices to modify AMF diversity and community structure.
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Affiliation(s)
- Bolaji Thanni
- Division Soil and Water Management, Department of Earth and Environmental Sciences, KU Leuven, Kasteelpark Arenberg 20, box-3001, 3001, Heverlee, Leuven, Belgium.
- Root and Tuber Agronomy, International Institute of Tropical Agriculture, Ibadan, Nigeria.
| | - Roel Merckx
- Division Soil and Water Management, Department of Earth and Environmental Sciences, KU Leuven, Kasteelpark Arenberg 20, box-3001, 3001, Heverlee, Leuven, Belgium
| | - Pieterjan De Bauw
- Division Soil and Water Management, Department of Earth and Environmental Sciences, KU Leuven, Kasteelpark Arenberg 20, box-3001, 3001, Heverlee, Leuven, Belgium
| | - Margaux Boeraeve
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
| | - Gerrit Peeters
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
| | - Stefan Hauser
- Root and Tuber Agronomy, International Institute of Tropical Agriculture, Ibadan, Nigeria
| | - Olivier Honnay
- Department of Biology, Plant Conservation and Population Biology, KU Leuven, B-3001, Leuven, Belgium
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13
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Säle V, Palenzuela J, Azcón-Aguilar C, Sánchez-Castro I, da Silva GA, Seitz B, Sieverding E, van der Heijden MGA, Oehl F. Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit. MYCORRHIZA 2021; 31:559-576. [PMID: 34327560 PMCID: PMC8484173 DOI: 10.1007/s00572-021-01042-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 07/08/2021] [Indexed: 05/17/2023]
Abstract
Almost all land plants form symbiotic associations with arbuscular mycorrhizal fungi (AMF). Individual plants usually are colonized by a wide range of phylogenetically diverse AMF species. The impact that different AMF taxa have on plant growth is only partly understood. We screened 44 AMF isolates for their effect on growth promotion and nutrient uptake of leek plants (Allium porrum), including isolates that have not been tested previously. In particular, we aimed to test weather AMF lineages with an ancient evolutionary age differ from relatively recent lineages in their effects on leek plants. The AMF isolates that were tested covered 18 species from all five AMF orders, eight families, and 13 genera. The experiment was conducted in a greenhouse. A soil-sand mixture was used as substrate for the leek plants. Plant growth response to inoculation with AMF varied from - 19 to 232% and depended on isolate, species, and family identity. Species from the ancient families Archaeosporaceae and Paraglomeraceae tended to be less beneficial, in terms of stimulation plant growth and nutrient uptake, than species of Glomeraceae, Entrophosporaceae, and Diversisporaceae, which are considered phylogenetically more recent than those ancient families. Root colonization levels also depended on AMF family. This study indicates that plant benefit in the symbiosis between plants and AMF is linked to fungal identity and phylogeny and it shows that there are large differences in effectiveness of different AMF.
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Affiliation(s)
- Verena Säle
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland.
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland.
- Vegetable-Production Extension, Agroscope, Müller-Thurgau-Strasse 29, CH-8820, Wädenswil, Switzerland.
| | - Javier Palenzuela
- Departamento de Microbiología del Suelo Y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Concepción Azcón-Aguilar
- Departamento de Microbiología del Suelo Y Sistemas Simbióticos, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, 18008, Granada, Spain
| | - Iván Sánchez-Castro
- Departamento de Microbiología, Universidad de Granada, Campus Universitario de Fuentenueva, 18071, Granada, Spain
| | - Gladstone Alves da Silva
- Departamento de Micologia, CCB, Universidade Federal de Pernambuco, Av. da Engenharia s/n, Cidade Universitária, Recife, PE, 50740-600, Brazil
| | - Benjamin Seitz
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland
| | - Ewald Sieverding
- Institute of Agricultural Sciences in the Tropics (Hans-Ruthenberg Institute), University of Hohenheim, Garbenstr. 13, 70599, Stuttgart-Hohenheim, Germany
| | - Marcel G A van der Heijden
- Plant-Soil-Interactions, Agroscope, Reckenholzstrasse 191, CH-8046, Zürich, Switzerland
- Department of Plant and Microbial Biology, University of Zürich, 8057, Zürich, Switzerland
| | - Fritz Oehl
- Ecotoxicology, Agroscope, Müller-Thurgau-Strasse 29, CH-8820, Wädenswil, Switzerland
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Liao X, Chen J, Guan R, Liu J, Sun Q. Two Arbuscular Mycorrhizal Fungi Alleviates Drought Stress and Improves Plant Growth in Cinnamomum migao Seedlings. MYCOBIOLOGY 2021; 49:396-405. [PMID: 34512083 PMCID: PMC8409944 DOI: 10.1080/12298093.2021.1938803] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 04/29/2021] [Accepted: 06/01/2021] [Indexed: 06/13/2023]
Abstract
Cinnamomum migao plants often face different degrees of drought in karst habitats, which can lead to plants' death, especially in the seedling stage. Widespread of arbuscular mycorrhizal (AM) fungi in karst soils have the potential to address this drought, which is a threat to C. migao seedlings. We inoculated C. migao seedlings with spores from Glomus lamellosum and Glomus etunicatum, two AM fungi widely distributed in karst soils, to observe seedling growth response after simulated drought. Our results showed that 40 g of G. lamellosum and G. etunicatum significantly promoted the growth of C. migao seedlings, 120 days after inoculation. Following a 15-day drought treatment, root colonization of the seedlings with G. lamellosum or G. etunicatum had lower the accumulation of malondialdehyde (MDA) and increased the accumulation of enzymes and osmotic substances in the seedlings. The relative water content in different organs (roots, stems, and leaves) of the drought-stressed seedlings was higher in plants with G. lamellosum or G. etunicatum than in plants without AM fungi colonization. Our results showed that inoculation with AM fungi was an effective means to improve the drought resistance of C. migao seedlings.
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Affiliation(s)
- Xiaofeng Liao
- Guizhou Academy of Sciences, Guizhou Province Institute of Mountain Resources, Guiyang, China
| | | | - Ruiting Guan
- College of Forestry, Guizhou University, Guiyang, China
| | - Jiming Liu
- College of Forestry, Guizhou University, Guiyang, China
| | - Qinwen Sun
- College of Pharmacy, Guizhou University of Traditional Chinese Medicine, Guiyang, China
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15
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Orrù L, Canfora L, Trinchera A, Migliore M, Pennelli B, Marcucci A, Farina R, Pinzari F. How Tillage and Crop Rotation Change the Distribution Pattern of Fungi. Front Microbiol 2021; 12:634325. [PMID: 34220731 PMCID: PMC8247931 DOI: 10.3389/fmicb.2021.634325] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 05/13/2021] [Indexed: 12/13/2022] Open
Abstract
Massive sequencing of fungal communities showed that climatic factors, followed by edaphic and spatial variables, are feasible predictors of fungal richness and community composition. This study, based on a long-term field experiment with tillage and no-tillage management since 1995 and with a crop rotation introduced in 2009, confirmed that tillage practices shape soil properties and impact soil fungal communities. Results highlighted higher biodiversity of saprotrophic fungi in soil sites with low disturbance and an inverse correlation between the biodiversity of ectomycorrhizal and saprotrophic fungi. We speculated how their mutual exclusion could be due to a substrate-mediated niche partitioning or by space segregation. Moreover, where the soil was ploughed, the species were evenly distributed. There was higher spatial variability in the absence of ploughing, with fungal taxa distributed according to a small-scale pattern, corresponding to micro-niches that probably remained undisturbed and heterogeneously distributed. Many differentially represented OTUs in all the conditions investigated were unidentified species or OTUs matching at high taxa level (i.e., phylum, class, order). Among the fungi with key roles in all the investigated conditions, there were several yeast species known to have pronounced endemism in soil and are also largely unidentified. In addition to yeasts, other fungal species emerged as either indicator of a kind of management or as strongly associated with a specific condition. Plant residues played a substantial role in defining the assortment of species.
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Affiliation(s)
- Luigi Orrù
- Council for Agricultural Research and Economics, Research Centre for Genomics and Bioinformatics, Fiorenzuola d'Arda, Italy
| | - Loredana Canfora
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Alessandra Trinchera
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Melania Migliore
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Bruno Pennelli
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Andrea Marcucci
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Roberta Farina
- Council for Agricultural Research and Economics, Research Centre for Agriculture and Environment, Rome, Italy
| | - Flavia Pinzari
- National Research Council of Italy, Institute for Biological Systems, Rome, Italy
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16
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Global AM fungi are dominating mycorrhizal communities in a tropical premontane dry forest in Laipuna, South Ecuador. Mycol Prog 2021. [DOI: 10.1007/s11557-021-01699-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
AbstractTropical dry forests are an intricate ecosystem with special adaptations to periods of drought. Arbuscular mycorrhizal fungi (AMF) are essential for plant survival in all terrestrial ecosystems but might be of even greater importance in dry forests as plant growth is limited due to nutrient and water deficiency during the dry season. Tropical dry forests in Ecuador are highly endangered, but studies about AMF communities are scarce. We investigated the AMF community of a premontane semi-deciduous dry forest in South Ecuador during the dry season. We estimated AMF diversity, distribution, and composition of the study site based on operational taxonomic units (OTUs) and compared the results to those from the tropical montane rainforest and páramo in South Ecuador. OTU delimitation was based on part of the small ribosomal subunit obtained by cloning and Sanger sequencing. Nearly all OTUs were Glomeraceae. The four frequent OTUs were Glomus, and comparison with the MaarjAM database revealed these to be globally distributed with a wide range of ecological adaptations. Several OTUs are shared with virtual taxa from dry forests in Africa. Ordination analysis of AMF communities from the tropical dry and montane rainforests in South Ecuador revealed a unique AMF community in the dry forest with only few overlapping OTUs. Most OTUs that were found in both dry and rainforests and on the two continents were globally distributed Glomus.
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17
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Moukarzel R, Ridgway HJ, Guerin-Laguette A, Jones EE. Grapevine rootstocks drive the community structure of arbuscular mycorrhizal fungi in New Zealand vineyards. J Appl Microbiol 2021; 131:2941-2956. [PMID: 34028142 DOI: 10.1111/jam.15160] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 05/02/2021] [Accepted: 05/20/2021] [Indexed: 11/27/2022]
Abstract
AIM Arbuscular mycorrhizal fungi (AMF) are often regarded as non-specific symbionts, but some AMF communities show host preference in various ecosystems including vineyards. Grapevine plants are very responsive to AMF colonization. Although these fungi have potentially significant applications for sustainable agricultural ecosystems, there is a gap in knowledge regarding AMF-grapevine interactions worldwide and especially in New Zealand. This study focused on identifying AMF taxa colonizing grapevines in New Zealand vineyards and investigated the effect of grapevine rootstocks on AMF community diversity and composition. METHODS AND RESULTS Denaturing gradient gel electrophoresis (DGGE) and trap cultures were used to characterize the AMF communities. Grapevine roots from three vineyards and nine rootstocks were analysed by DGGE and used in trap cultures for AMF recovery. Trap cultures allowed the recovery of six AMF spore morphotypes that belonged to Ambispora sp., Claroideoglomus sp., Funneliformis sp. and Glomus sp. Bands excised, reamplified and sequenced from the DGGE were assigned to Glomus sp., Rhizophagus sp. and Claroideoglomus sp. The AMF community analyses demonstrated that rootstock significantly (P < 0·05) influenced the AMF community composition in all sites. CONCLUSIONS The study showed that for a comprehensive identification of AMF, both results from trap culture and molecular work were needed and that the rootstock cultivar was the main driver of the arbuscular mycorrhizal community colonizing the roots. SIGNIFICANCE AND IMPACT OF THE STUDY This study provides a firm foundation for future research exploring the beneficial use of AMF in enhancing grapevine production and sustainability.
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Affiliation(s)
- R Moukarzel
- Lincoln University, Lincoln, Canterbury, New Zealand
| | - H J Ridgway
- The New Zealand Institute for Plant and Food Research Ltd, Private Bag 4704, Christchurch, New Zealand
| | - A Guerin-Laguette
- Mycotree C/-Southern Woods Nursery, Christchurch, Canterbury, New Zealand
| | - E E Jones
- Lincoln University, Lincoln, Canterbury, New Zealand
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18
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Guo N, Bi Y, Zhang Y, Wang K, Xiao L, Waitkus AK. Grazing and mining influence the population of arbuscular mycorrhizal fungi around the opencast coal mine pit. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:21425-21436. [PMID: 33415634 DOI: 10.1007/s11356-020-11656-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Accepted: 11/12/2020] [Indexed: 06/12/2023]
Abstract
The influence of grazing and mining on arbuscular mycorrhizal fungi (AMF) species in grassland were studied around the opencast coal mine pit. The two sampling transects had been designed which was located in the grazing area and in the non-grazing area in the grassland on the north side of the opencast coal mining area. Besides, two control points with the direct distance of 8 km to the opencast coal mining area have been designed. The two points are located in the inside grassland station and outside the grassland station. We collected 3 replicate rhizosphere soil in every point which is from the two transects. We analyzed the genetic diversity of AMF, measured the chemical properties and enzyme of rhizosphere soil of Cleistogenes squarrosa, and explored their correlations using redundancy analysis. And we identified the factors affecting species diversity of AMF around the mining area. Our results showed that grazing on the grassland around the opencast coal mine will aggravate soil degradation and reduce the species richness and diversity of arbuscular mycorrhizal fungi in rhizosphere soil, which can be a theoretical basis for the scientific management of the grassland around the opencast mining area.
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Affiliation(s)
- Nan Guo
- College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing, 100083, China
| | - Yinli Bi
- College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing, 100083, China.
- College of Geology and Environment, Xi'an University of Science and Technology, Xi'an, 710054, China.
| | - Yanxu Zhang
- College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing, 100083, China
| | - Kun Wang
- College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing, 100083, China
| | - Li Xiao
- College of Geoscience and Surveying Engineering, China University of Mining and Technology (Beijing), Beijing, 100083, China
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19
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Arid Ecosystem Vegetation Canopy-Gap Dichotomy: Influence on Soil Microbial Composition and Nutrient Cycling Functional Potential. Appl Environ Microbiol 2021; 87:AEM.02780-20. [PMID: 33310716 PMCID: PMC8090872 DOI: 10.1128/aem.02780-20] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Increasing temperatures and drought in desert ecosystems are predicted to cause decreased vegetation density combined with barren ground expansion. It remains unclear how nutrient availability, microbial diversity, and the associated functional capacity vary between vegetated-canopy and gap soils. The specific aim of this study was to characterize canopy vs gap microsite effect on soil microbial diversity, the capacity of gap soils to serve as a canopy-soil microbial reservoir, nitrogen (N)-mineralization genetic potential (ureC gene abundance) and urease enzyme activity, and microbial-nutrient pool associations in four arid-hyperarid geolocations of the western Sonoran Desert, Arizona (USA). Microsite combined with geolocation explained 57% and 45.8% of the observed variation in bacterial/archaeal and fungal community composition, respectively. A core microbiome of amplicon sequence variants was shared between the canopy and gap soil communities; however, canopy-soils included abundant taxa that were not present in associated gap communities, thereby suggesting that these taxa cannot be sourced from the associated gap soils. Linear mixed-effects models showed that canopy-soils have significantly higher microbial richness, nutrient content, and organic N-mineralization genetic and functional capacity. Furthermore, ureC gene abundance was detected in all samples suggesting that ureC is a relevant indicator of N-mineralization in deserts. Additionally, novel phylogenetic associations were observed for ureC with the majority belonging to Actinobacteria and uncharacterized bacteria. Thus, key N-mineralization functional capacity is associated with a dominant desert phylum. Overall, these results suggest that lower microbial diversity and functional capacity in gap soils may impact ecosystem sustainability as aridity drives open-space expansion in deserts.
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20
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Hannula S, Morriën E, van der Putten W, de Boer W. Rhizosphere fungi actively assimilating plant-derived carbon in a grassland soil. FUNGAL ECOL 2020. [DOI: 10.1016/j.funeco.2020.100988] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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21
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Space and Vine Cultivar Interact to Determine the Arbuscular Mycorrhizal Fungal Community Composition. J Fungi (Basel) 2020; 6:jof6040317. [PMID: 33260901 PMCID: PMC7712214 DOI: 10.3390/jof6040317] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 11/24/2020] [Accepted: 11/24/2020] [Indexed: 01/04/2023] Open
Abstract
The interest in the use of microbes as biofertilizers is increasing in recent years as the demands for sustainable cropping systems become more pressing. Although very widely used as biofertilizers, arbuscular mycorrhizal (AM) fungal associations with specific crops have received little attention and knowledge is limited, especially in the case of vineyards. In this study, the AM fungal community associated with soil and roots of a vineyard on Mallorca Island, Spain was characterized by DNA sequencing to resolve the relative importance of grape variety on their diversity and composition. Overall, soil contained a wider AM fungal diversity than plant roots, and this was found at both taxonomic and phylogenetic levels. The major effect on community composition was associated with sample type, either root or soil material, with a significant effect for the variety of the grape. This effect interacted with the spatial distribution of the plants. Such an interaction revealed a hierarchical effect of abiotic and biotic factors in shaping the composition of AM fungal communities. Our results have direct implications for the understanding of plant-fungal assemblages and the potential functional differences across plants in vineyard cropping.
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22
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Luo Y, Wang Z, He Y, Li G, Lv X, Zhuang L. High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis. BMC Microbiol 2020; 20:335. [PMID: 33143657 PMCID: PMC7640387 DOI: 10.1186/s12866-020-02024-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 10/27/2020] [Indexed: 12/28/2022] Open
Abstract
BACKGROUND Ferula sinkiangensis is an increasingly endangered medicinal plant. Arbuscular mycorrhiza fungi (AMF) are symbiotic microorganisms that live in the soil wherein they enhance nutrient uptake, stress resistance, and pathogen defense in host plants. While such AMF have the potential to contribute to the cultivation of Ferula sinkiangensis, the composition of AMF communities associated with Ferula sinkiangensis and the relationship between these fungi and other pertinent abiotic factors still remains to be clarified. RESULTS Herein, we collected rhizosphere and surrounding soil samples at a range of depths (0-20, 20-40, and 40-60 cm) and a range of slope positions (bottom, middle, top). These samples were then subjected to analyses of soil physicochemical properties and high-throughput sequencing (Illumina MiSeq). We determined that Glomus and Diversispora species were highly enriched in all samples. We further found that AMF diversity and richness varied significantly as a function of slope position, with this variation primarily being tied to differences in relative Glomus and Diversispora abundance. In contrast, no significant relationship was observed between soil depth and overall AMF composition, although some AMF species were found to be sensitive to soil depth. Many factors significantly affected AMF community composition, including organic matter content, total nitrogen, total potassium, ammonium nitrogen, nitrate nitrogen, available potassium, total dissolvable salt levels, pH, soil water content, and slope position. We further determined that Shannon diversity index values in these communities were positively correlated with total phosphorus, nitrate-nitrogen levels, and pH values (P < 0.05), whereas total phosphorus, total dissolvable salt levels, and pH were positively correlated with Chao1 values (P < 0.05). CONCLUSION In summary, our data revealed that Glomus and Diversispora are key AMF genera found within Ferula sinkiangensis rhizosphere soil. These fungi are closely associated with specific environmental and soil physicochemical properties, and these soil sample properties also differed significantly as a function of slope position (P < 0.05). Together, our results provide new insights regarding the relationship between AMF species and Ferula sinkiangensis, offering a theoretical basis for further studies of their development.
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Affiliation(s)
- Yunfeng Luo
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China
| | - Zhongke Wang
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China
| | - Yaling He
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China
| | - Guifang Li
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China
| | - Xinhua Lv
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China
| | - Li Zhuang
- College of life Sciences, Shihezi University, Shihezi City, 832003, Xinjiang, China.
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23
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Kokkoris V, Lekberg Y, Antunes PM, Fahey C, Fordyce JA, Kivlin SN, Hart MM. Codependency between plant and arbuscular mycorrhizal fungal communities: what is the evidence? THE NEW PHYTOLOGIST 2020; 228:828-838. [PMID: 32452032 DOI: 10.1111/nph.16676] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Accepted: 04/26/2020] [Indexed: 05/09/2023]
Abstract
That arbuscular mycorrhizal (AM) fungi covary with plant communities is clear, and many papers report nonrandom associations between symbiotic partners. However, these studies do not test the causal relationship, or 'codependency', whereby the composition of one guild affects the composition of the other. Here we outline underlying requirements for codependency, compare important drivers for both plant and AM fungal communities, and assess how host preference - a pre-requisite for codependency - changes across spatiotemporal scales and taxonomic resolution for both plants and AM fungi. We find few examples in the literature designed to test for codependency and those that do have been conducted within plots or mesocosms. Also, while plants and AM fungi respond similarly to coarse environmental filters, most variation remains unexplained, with host identity explaining less than 30% of the variation in AM fungal communities. These results combined question the likelihood of predictable co-occurrence, and therefore evolution of codependency, between plant and AM fungal taxa across locations. We argue that codependency is most likely to occur in homogeneous environments where specific plant - AM fungal pairings have functional consequences for the symbiosis. We end by outlining critical aspects to consider moving forward.
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Affiliation(s)
- Vasilis Kokkoris
- Department of Biology, University of Ottawa, Ottawa, ON, K1N 6N5, Canada
| | - Ylva Lekberg
- MPG Ranch and University of Montana, Missoula, MT, 59833, USA
| | - Pedro M Antunes
- Department of Biology, Algoma University, Sault Ste. Marie, ON, P6A 2G4, Canada
| | - Catherine Fahey
- Department of Biology, Algoma University, Sault Ste. Marie, ON, P6A 2G4, Canada
| | - James A Fordyce
- Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Knoxville, TN, 37996, USA
| | - Stephanie N Kivlin
- Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Knoxville, TN, 37996, USA
| | - Miranda M Hart
- Biology, University of British Columbia Okanagan, Kelowna, BC, V1V 1V7, Canada
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Ji L, Zhang Y, Yang Y, Yang L, Yang N, Zhang D. Long-term effects of mixed planting on arbuscular mycorrhizal fungal communities in the roots and soils of Juglans mandshurica plantations. BMC Microbiol 2020; 20:304. [PMID: 33045991 PMCID: PMC7552469 DOI: 10.1186/s12866-020-01987-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Accepted: 09/25/2020] [Indexed: 01/08/2023] Open
Abstract
Background Establishing mixed plantations is an effective way to improve soil fertility and increase forest productivity. Arbuscular mycorrhizal (AM) fungi are obligate symbiotic fungi that can promote mineral nutrient absorption and regulate intraspecific and interspecific competition in plants. However, the effects of mixed plantations on the community structure and abundance of AM fungi are still unclear. Illumina MiSeq sequencing was used to investigate the AM fungal community in the roots and soils of pure and mixed plantations (Juglans mandshurica × Larix gmelinii). The objective of this study is to compare the differential responses of the root and rhizosphere soil AM fungal communities of Juglans mandshurica to long-term mixed plantation management. Results Glomus and Paraglomus were the dominant genera in the root samples, accounting for more than 80% of the sequences. Compared with that in the pure plantation, the relative abundance of Glomus was higher in the mixed plantation. Glomus, Diversispora and Paraglomus accounted for more than 85% of the sequences in the soil samples. The relative abundances of Diversispora and an unidentified genus of Glomeromycetes were higher and lower in the pure plantation, respectively. The Root_P samples (the roots in the pure plantation) had the highest number of unique OTUs (operational taxonomic units), which belonged mainly to an unidentified genus of Glomeromycetes, Paraglomus, Glomus and Acaulospora. The number of unique OTUs detected in the soil was lower than that in the roots. In both the root and soil samples, the forest type did not have a significant effect on AM fungal diversity, but the Sobs value and the Shannon, Chao1 and Ace indices of AM fungi in the roots were significantly higher than those in the soil. Conclusions Mixed forest management had little effect on the AM fungal community of Juglans mandshurica roots and significantly changed the community composition of the soil AM fungi, but not the diversity.
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Affiliation(s)
- Li Ji
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, 150040, P. R. China.,Jilin Academy of Forestry, Changchun, 130033, P.R. China
| | - Yan Zhang
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, 150040, P. R. China
| | - Yuchun Yang
- Jilin Academy of Forestry, Changchun, 130033, P.R. China
| | - Lixue Yang
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, 150040, P. R. China.
| | - Na Yang
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, 150040, P. R. China.,ZEHO Waterfront Ecological Environment Management Co., Ltd, Beijing, 100084, P. R. China
| | - Depeng Zhang
- Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, 150040, P. R. China
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Barceló M, van Bodegom PM, Tedersoo L, den Haan N, Veen GF(C, Ostonen I, Trimbos K, Soudzilovskaia NA. The abundance of arbuscular mycorrhiza in soils is linked to the total length of roots colonized at ecosystem level. PLoS One 2020; 15:e0237256. [PMID: 32915795 PMCID: PMC7485760 DOI: 10.1371/journal.pone.0237256] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 07/22/2020] [Indexed: 11/19/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) strongly affect ecosystem functioning. To understand and quantify the mechanisms of this control, knowledge about the relationship between the actual abundance and community composition of AMF in the soil and in plant roots is needed. We collected soil and root samples in a natural dune grassland to test whether, across a plant community, the abundance of AMF in host roots (measured as the total length of roots colonized) is related to soil AMF abundance (using the neutral lipid fatty acids (NLFA) 16:1ω5 as proxy). Next-generation sequencing was used to explore the role of community composition in abundance patterns. We found a strong positive relationship between the total length of roots colonized by AMF and the amount of NLFA 16:1ω5 in the soil. We provide the first field-based evidence of proportional biomass allocation between intra-and extraradical AMF mycelium, at ecosystem level. We suggest that this phenomenon is made possible by compensatory colonization strategies of individual fungal species. Finally, our findings open the possibility of using AMF total root colonization as a proxy for soil AMF abundances, aiding further exploration of the AMF impacts on ecosystems functioning.
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Affiliation(s)
- Milagros Barceló
- Environmental Biology Department, Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
| | - Peter M. van Bodegom
- Environmental Biology Department, Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
| | - Leho Tedersoo
- Natural History Museum, University of Tartu, Tartu, Estonia
| | - Nadja den Haan
- Environmental Biology Department, Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
| | - G. F. (Ciska) Veen
- Department of Terrestrial Ecology, Netherlands Institute of Ecology, Wageningen, The Netherlands
| | - Ivika Ostonen
- University of Tartu, Institute of Ecology and Earth Sciences, Tartu, Estonia
| | - Krijn Trimbos
- Environmental Biology Department, Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
| | - Nadejda A. Soudzilovskaia
- Environmental Biology Department, Institute of Environmental Sciences, Leiden University, Leiden, Netherlands
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26
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Li ZF, Lü PP, Wang YL, Yao H, Maitra P, Sun X, Zheng Y, Guo LD. Response of arbuscular mycorrhizal fungal community in soil and roots to grazing differs in a wetland on the Qinghai-Tibet plateau. PeerJ 2020; 8:e9375. [PMID: 32601551 PMCID: PMC7307571 DOI: 10.7717/peerj.9375] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 05/27/2020] [Indexed: 12/17/2022] Open
Abstract
Grazing as one of the most important disturbances affects the abundance, diversity and community composition of arbuscular mycorrhizal (AM) fungi in ecosystems, but the AM fungi in response to grazing in wetland ecosystems remain poorly documented. Here, we examined AM fungi in roots and soil in grazing and non-grazing plots in Zoige wetland on the Qinghai-Tibet plateau. Grazing significantly increased AM fungal spore density and glomalin-related soil proteins, but had no significant effect on the extra radical hyphal density of AM fungi. While AM fungal richness and community composition differed between roots and soil, grazing was found to influence only the community composition in soil. This study shows that moderate grazing can increase the biomass of AM fungi and soil carbon sequestration, and maintain the AM fungal diversity in the wetland ecosystem. This finding may enhance our understanding of the AM fungi in response to grazing in the wetland on the Qinghai-Tibet plateau.
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Affiliation(s)
- Zhong-Feng Li
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Peng-Peng Lü
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Yong-Long Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Hui Yao
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Pulak Maitra
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Xiang Sun
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Yong Zheng
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Liang-Dong Guo
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
- College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China
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27
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Chaudhary VB, Nolimal S, Sosa-Hernández MA, Egan C, Kastens J. Trait-based aerial dispersal of arbuscular mycorrhizal fungi. THE NEW PHYTOLOGIST 2020; 228:238-252. [PMID: 32421866 DOI: 10.1111/nph.16667] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2040] [Accepted: 05/06/2020] [Indexed: 06/11/2023]
Abstract
Dispersal is a key process driving local-scale community assembly and global-scale biogeography of plant symbiotic arbuscular mycorrhizal (AM) fungal communities. A trait-based approach could improve predictions regarding how AM fungal aerial dispersal varies by species. We conducted month-long collections of aerial AM fungi for 12 consecutive months in an urban mesic environment at heights of 20 m. We measured morphological functional traits of collected spores and assessed aerial AM fungal community structure both morphologically and with high-throughput sequencing. Large numbers of AM fungal spores were present in the air over the course of one year and these spores exhibited traits that facilitate aerial dispersal. Measured aerial spores were smaller than average for Glomeromycotinan fungi. Trait-based predictions indicate that nearly 1/3 of described species from diverse genera demonstrate the potential for aerial dispersal. Diversity of aerial AM fungi was relatively high (20 spore species and 17 virtual taxa) and both spore abundance and community structure shifted temporally. The prevalence of aerial dispersal in AM fungi is perhaps greater than previously indicated and a hypothesized model of AM fungal aerial dispersal mechanisms is presented. Anthropogenic soil impacts may liberate AM fungal propagules initiating the dispersal of ruderal species.
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Affiliation(s)
- V Bala Chaudhary
- Department of Environmental Science and Studies, DePaul University, Chicago, IL, 60614, United States
| | - Sarah Nolimal
- Department of Environmental Science and Studies, DePaul University, Chicago, IL, 60614, United States
| | - Moisés A Sosa-Hernández
- Plant Ecology, Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Cameron Egan
- Department of Biology, Okanagan College, Kelowna, BC, Canada, V1Y 4X8
| | - Jude Kastens
- Kansas Applied Remote Sensing Program, Kansas Biological Survey, University of Kansas, Lawrence, KS, 66047, United States
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Giesemann P, Rasmussen HN, Liebel HT, Gebauer G. Discreet heterotrophs: green plants that receive fungal carbon through Paris-type arbuscular mycorrhiza. THE NEW PHYTOLOGIST 2020; 226:960-966. [PMID: 31837155 DOI: 10.1111/nph.16367] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Accepted: 12/08/2019] [Indexed: 06/10/2023]
Affiliation(s)
- Philipp Giesemann
- Laboratory of Isotope Biogeochemistry, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95440, Bayreuth, Germany
| | - Hanne N Rasmussen
- Department of Geosciences and Nature Resource Management, Section of Forest, Nature and Biomass, University of Copenhagen, Rolighedsvej 23, 1958 Frederiksberg C, Copenhagen, Denmark
| | - Heiko T Liebel
- Laboratory of Isotope Biogeochemistry, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95440, Bayreuth, Germany
- Biological Station Murnauer Moos, 82418, Murnau, Germany
| | - Gerhard Gebauer
- Laboratory of Isotope Biogeochemistry, Bayreuth Center of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95440, Bayreuth, Germany
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29
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Schappe T, Albornoz FE, Turner BL, Jones FA. Co-occurring Fungal Functional Groups Respond Differently to Tree Neighborhoods and Soil Properties Across Three Tropical Rainforests in Panama. MICROBIAL ECOLOGY 2020; 79:675-685. [PMID: 31654106 DOI: 10.1007/s00248-019-01446-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Accepted: 09/27/2019] [Indexed: 06/10/2023]
Abstract
Abiotic and biotic drivers of co-occurring fungal functional guilds across regional-scale environmental gradients remain poorly understood. We characterized fungal communities using Illumina sequencing from soil cores collected across three Neotropical rainforests in Panama that vary in soil properties and plant community composition. We classified each fungal OTU into different functional guilds, namely plant pathogens, saprotrophs, arbuscular mycorrhizal (AM), or ectomycorrhizal (ECM). We measured soil properties and nutrients within each core and determined the tree community composition and richness around each sampling core. Canonical correspondence analyses showed that soil pH and moisture were shared potential drivers of fungal communities for all guilds. However, partial the Mantel tests showed different strength of responses of fungal guilds to composition of trees and soils. Plant pathogens and saprotrophs were more strongly correlated with soil properties than with tree composition; ECM fungi showed a stronger correlation with tree composition than with soil properties; and AM fungi were correlated with soil properties, but not with trees. In conclusion, we show that co-occurring fungal guilds respond differently to abiotic and biotic environmental factors, depending on their ecological function. This highlights the joint role that abiotic and biotic factors play in determining composition of fungal communities, including those associated with plant hosts.
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Affiliation(s)
- Tyler Schappe
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.
- Present address: Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC, 27695, USA.
| | - Felipe E Albornoz
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA
- Present address: School of Agriculture and Environment, The University of Western Australia, Crawley, WA, 6009, Australia
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama
| | - F Andrew Jones
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR, 97331, USA.
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama.
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30
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Jia Y, Shi Z, Chen Z, Walder F, Tian C, Feng G. Soil moisture threshold in controlling above- and belowground community stability in a temperate desert of Central Asia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 703:134650. [PMID: 31731166 DOI: 10.1016/j.scitotenv.2019.134650] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 09/23/2019] [Indexed: 06/10/2023]
Abstract
Terrestrial ecosystems are composed of above- and belowground community, which have been researched separately for many years even though the two subsystems clearly interact with each other. And it is still less understood how the above- and belowground ecosystems co-response to the changing precipitation in this changing world. To understand the interdependence and co-responses of plant-arbuscular mycorrhizal (AM) fungi symbioses to this facet of climate change, we examined the plant and AM fungal diversity and abundance along both, a transect from east to west of the desert which exhibits an annual precipitation gradient and a topographical transect of a typical sand dune which exhibits a gradient of soil moisture but equal precipitation, in a temperate desert in Central Asia. The results showed that community structure and biomass of plants and AM fungi along both transects were positively correlated and related to either precipitation or soil moisture, strongly support the Habitat Hypothesis. We found a soil moisture threshold between 0.64% and 0.86%, below which the variability of plant coverage, plant species richness, spore density and Shannon-wiener diversity index of both plant and AM fungal communities increased sharply yielding in an average threshold of 0.73% for the stability of plant-AMF symbioses. Our results highlight that increasing precipitation contributes to above- and belowground, and particularly to the overall AM-symbiotic stability in a desert ecosystem. This emphasizes the susceptibility and the importance plant-AMF symbioses for ecosystem stability to climate changes across different scales.
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Affiliation(s)
- Yangyang Jia
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Zhaoyong Shi
- College of Agriculture, Henan University of Science and Technology, Luoyang 471003, China
| | - Zhichao Chen
- Henan Polytechnic University, Jiaozuo 454003, China
| | - Florian Walder
- Plant-Soil-Interactions, Research Division Agroecology and Environment, Agroscope, Zurich 8046, Switzerland
| | - Changyan Tian
- Xinjiang Institute Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011, China
| | - Gu Feng
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.
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31
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Pellegrino E, Gamper HA, Ciccolini V, Ercoli L. Forage Rotations Conserve Diversity of Arbuscular Mycorrhizal Fungi and Soil Fertility. Front Microbiol 2020; 10:2969. [PMID: 31998261 PMCID: PMC6962183 DOI: 10.3389/fmicb.2019.02969] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 12/09/2019] [Indexed: 01/07/2023] Open
Abstract
In the Mediterranean, long-term impact of typical land uses on soil fertility have not been quantified yet on replicated mixed crop-livestock farms and considering the variability of soil texture. Here, we report the effects, after 15 years of practice, of two legume-winter cereal rotations, olive orchards and vineyards on microbiological and chemical indicators of soil fertility and the communities of arbuscular mycorrhizal fungi (AMF). We compare the changes among these four agricultural land-use types to woodland reference sites. Root colonization by AMF of English ryegrass (Lolium perenne L.), a grass that occurred under all land use types, was only half as heavy in biannual berseem clover (Trifolium alexandrinum L.)-winter cereal rotations than in 4-year alfalfa (Medicago sativa L.)-winter cereal rotations. In olive (Olea europaea L.) orchards and vineyards (Vitis vinifera L.), where weeds are controlled by frequent surface tillage, the AMF root colonization of ryegrass was again much lower than in the legume-cereal rotations and at the woodland reference sites. All the microbial parameters and soil organic carbon correlated most strongly with differences in occurrence and relative abundance (β-diversity) of AMF genera in soil. The soil pH and mineral nutrients in soil strongly correlated with differences in AMF root colonization and AMF genus richness (α-diversity) in soil. Diversity of AMF was much less affected by soil texture than land use, while the opposite was true for microbial and chemical soil fertility indicators. Land uses that guaranteed a continuous ground cover of herbaceous plants and that involved only infrequent tillage, such as multiyear alfalfa-winter cereal rotation, allowed members of the AMF genus Scutellospora to persist and remain abundant. On the contrary, under land uses accompanied by frequent tillage and hence discontinuous presence of herbaceous plants, such as tilled olive orchard and vineyard, members of the genus Funneliformis dominated. These results suggest that multiyear alfalfa-winter cereal rotation with active plant growth throughout the year is the least detrimental agricultural land use in soil carbon and AMF abundance and diversity, relative to the woodland reference.
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Affiliation(s)
- Elisa Pellegrino
- Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa, Italy
| | - Hannes A. Gamper
- Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa, Italy
| | | | - Laura Ercoli
- Institute of Life Sciences, Scuola Superiore Sant’Anna, Pisa, Italy
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32
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Stevens BM, Propster JR, Öpik M, Wilson GWT, Alloway SL, Mayemba E, Johnson NC. Arbuscular mycorrhizal fungi in roots and soil respond differently to biotic and abiotic factors in the Serengeti. MYCORRHIZA 2020; 30:79-95. [PMID: 31970495 DOI: 10.1007/s00572-020-00931-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 01/10/2020] [Indexed: 05/14/2023]
Abstract
This study explores the relationships of AM fungal abundance and diversity with biotic (host plant, ungulate grazing) and abiotic (soil properties, precipitation) factors in the Serengeti National Park, Tanzania. Soil and root samples were collected from grazed and ungrazed plots at seven sites across steep soil fertility and precipitation gradients. AM fungal abundance in the soil was estimated from the density of spores and the concentration of a fatty acid biomarker. Diversity of AM fungi in roots and soils was measured using DNA sequencing and spore identification. AM fungal abundance in soil decreased with grazing and precipitation and increased with soil phosphorus. The community composition of AM fungal DNA in roots and soils differed. Root samples had more AM fungal indicator species associated with biotic factors (host plant species and grazing), and soil samples had more indicator species associated with particular sample sites. These findings suggest that regional edaphic conditions shape the site-level species pool from which plant species actively select root-colonizing fungal assemblages modified by grazing. Combining multiple measurements of AM fungal abundance and community composition provides the most informed assessment of the structure of mycorrhizal fungal communities in natural ecosystems.
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Affiliation(s)
- Bo Maxwell Stevens
- School of Earth and Sustainability, Northern Arizona University, Flagstaff, AZ, 86011, USA.
| | - Jeffrey Ryan Propster
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | - Maarja Öpik
- Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, 40 Lai St, 51005, Tartu, Estonia
| | - Gail W T Wilson
- Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, OK, 74078, USA
| | - Sara Lynne Alloway
- School of Earth and Sustainability, Northern Arizona University, Flagstaff, AZ, 86011, USA
| | | | - Nancy Collins Johnson
- School of Earth and Sustainability, Northern Arizona University, Flagstaff, AZ, 86011, USA
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA
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Goomaral A, Yamato M, Kusakabe R, Undarmaa J, Yamanaka N, Taniguchi T. Effects of livestock grazing intensity on soil arbuscular mycorrhizal fungi and glomalin-related soil protein in a mountain forest steppe and a desert steppe of Mongolia. LANDSCAPE AND ECOLOGICAL ENGINEERING 2019. [DOI: 10.1007/s11355-019-00399-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Soil Organic Carbon Shapes AMF Communities in Soils and Roots of Cynodon dactylon under Anti-Seasonal Drying-Wetting Cycles. DIVERSITY-BASEL 2019. [DOI: 10.3390/d11100197] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Anti-seasonal drying-wetting cycles since 2010 have substantially altered its soil and vegetation status in the drawdown zone of China’s Three Gorges Reservoir (TGR). Such alternations may thus affect the composition and functioning of soil microbial communities, including the beneficial arbuscular mycorrhizal fungi (AMF), which enhance plant performance. Moreover, limited information is available if AMF communities are different in soils and roots, particularly under contrasting land-use changes. By combining the Illumina Miseq sequencing with bioinformatics analyses, AMF communities in both rhizosphere soils and roots of a stoloniferous and rhizomatous C4 perennial of Cynodon dactylon were characterized under three land-use types: (1) crop cultivated, (2) non-cultivated non-disturbed, and (3) disturbed non-cultivated land. A total of 35 and 26 AMF taxa were respectively detected from C. dactylon rhizosphere soils and roots from these three land-use types, which had endured four anti-seasonal drying/summer-wetting/winter cycles. Contrasting differentiations in the AMF community composition and structure were displayed in the C. dactylon rhizosphere soils and roots, and between land-use types. Nonmetric multidimensional scaling analyses revealed that AMF communities significantly correlated to soil organic carbon in the rhizosphere soils and roots of C. dactylon, to land-use types only in rhizosphere soils, whereas to soil moisture only in roots. Our results highlight the effects of soil nutrients and land-use changes on AMF community composition and diversity under the canopy of C. dactylon in TGR. The identified dominant AMF taxa can be employed to vegetation restoration in such degraded habitats globally.
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Maitra P, Zheng Y, Chen L, Wang YL, Ji NN, Lü PP, Gan HY, Li XC, Sun X, Zhou XH, Guo LD. Effect of drought and season on arbuscular mycorrhizal fungi in a subtropical secondary forest. FUNGAL ECOL 2019. [DOI: 10.1016/j.funeco.2019.04.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Hontoria C, García-González I, Quemada M, Roldán A, Alguacil MM. The cover crop determines the AMF community composition in soil and in roots of maize after a ten-year continuous crop rotation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 660:913-922. [PMID: 30743976 DOI: 10.1016/j.scitotenv.2019.01.095] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 01/09/2019] [Accepted: 01/09/2019] [Indexed: 05/06/2023]
Abstract
Intensive agricultural practices are responsible for soil biological degradation. By stimulating indigenous arbuscular mycorrhizal fungi (AMF), cover cropping enhances soil health and promotes agroecosystem sustainability. Still, the legacy effects of cover crops (CCs) and the major factors driving the AM fungal community are not well known; neither is the influence of the specific CC. This work describes a field experiment established in Central Spain to test the effect of replacing winter fallow by barley (Hordeum vulgare L.) or vetch (Vicia sativa L.) during the intercropping of maize (Zea mays L.). We examined the community composition of the AMF in the roots and rhizosphere soil associated with the subsequent cash crop after 10 years of cover cropping, using Illumina technology. The multivariate analysis showed that the AMF communities under the barley treatment differed significantly from those under fallow, whereas no legacy effect of the vetch CC was detected. Soil organic carbon, electrical conductivity, pH, Ca and microbial biomass carbon were identified as major factors shaping soil AMF communities. Specific AMF taxa were found to play a role in plant uptake of P, Fe, Zn, Mn, and Cd, which may shed light on the functionality of these taxa. In our conditions, the use of barley as a winter CC appears to be an appropriate choice with respect to promotion of AMF populations and biological activity in agricultural soils with intercropping systems. However, more research on CC species and their legacy effect on the microbial community composition and functionality are needed to guide decisions in knowledge-based agriculture.
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Affiliation(s)
- C Hontoria
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain
| | - I García-González
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain
| | - M Quemada
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain; Centro de Estudios e Investigación para la Gestión de Riesgos Agrarios y Medioambientales, CEIGRAM-UPM, Senda del Rey 13, 28040 Madrid, Spain
| | - A Roldán
- Department of Soil and Water Conservation, CSIC-Centro de Edafología y Biología Aplicada del Segura, P.O. Box 164, Campus de Espinardo, 30100 Murcia, Spain
| | - M M Alguacil
- Soil Microbiology and Symbiotic Systems Department, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, Granada 18008, Spain; Department of Soil and Water Conservation, CSIC-Centro de Edafología y Biología Aplicada del Segura, P.O. Box 164, Campus de Espinardo, 30100 Murcia, Spain.
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37
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Rasmussen PU, Hugerth LW, Blanchet FG, Andersson AF, Lindahl BD, Tack AJM. Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root-associated soil of a wild perennial herb. THE NEW PHYTOLOGIST 2018; 220:1248-1261. [PMID: 29573431 PMCID: PMC6282561 DOI: 10.1111/nph.15088] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Accepted: 02/11/2018] [Indexed: 05/12/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi form diverse communities and are known to influence above-ground community dynamics and biodiversity. However, the multiscale patterns and drivers of AM fungal composition and diversity are still poorly understood. We sequenced DNA markers from roots and root-associated soil from Plantago lanceolata plants collected across multiple spatial scales to allow comparison of AM fungal communities among neighbouring plants, plant subpopulations, nearby plant populations, and regions. We also measured soil nutrients, temperature, humidity, and community composition of neighbouring plants and nonAM root-associated fungi. AM fungal communities were already highly dissimilar among neighbouring plants (c. 30 cm apart), albeit with a high variation in the degree of similarity at this small spatial scale. AM fungal communities were increasingly, and more consistently, dissimilar at larger spatial scales. Spatial structure and environmental drivers explained a similar percentage of the variation, from 7% to 25%. A large fraction of the variation remained unexplained, which may be a result of unmeasured environmental variables, species interactions and stochastic processes. We conclude that AM fungal communities are highly variable among nearby plants. AM fungi may therefore play a major role in maintaining small-scale variation in community dynamics and biodiversity.
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Affiliation(s)
- Pil U. Rasmussen
- Department of EcologyEnvironment and Plant SciencesStockholm UniversitySE‐106 91StockholmSweden
| | - Luisa W. Hugerth
- School of BiotechnologyScience for Life LaboratoryKTH Royal Institute of TechnologyPO Box 1031SE‐171 21SolnaSweden
- Centre for Translational Microbiome ResearchDepartment of Molecular, Tumor and Cell BiologyScience for Life LaboratoryKarolinska Institutet171 65SolnaSweden
| | - F. Guillaume Blanchet
- Département de BiologieFaculté des SciencesUniversité de Sherbrooke2500 Boulevard UniversitéSherbrookeQCJ1K 2R1Canada
| | - Anders F. Andersson
- School of BiotechnologyScience for Life LaboratoryKTH Royal Institute of TechnologyPO Box 1031SE‐171 21SolnaSweden
| | - Björn D. Lindahl
- Department of Soil and EnvironmentSwedish University of Agricultural SciencesBox 7014SE‐750 07UppsalaSweden
| | - Ayco J. M. Tack
- Department of EcologyEnvironment and Plant SciencesStockholm UniversitySE‐106 91StockholmSweden
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38
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Sheldrake M, Rosenstock NP, Mangan S, Revillini D, Sayer EJ, Olsson PA, Verbruggen E, Tanner EVJ, Turner BL, Wright SJ. Responses of arbuscular mycorrhizal fungi to long-term inorganic and organic nutrient addition in a lowland tropical forest. THE ISME JOURNAL 2018; 12:2433-2445. [PMID: 29899509 PMCID: PMC6155082 DOI: 10.1038/s41396-018-0189-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2017] [Revised: 03/13/2018] [Accepted: 03/18/2018] [Indexed: 11/09/2022]
Abstract
Improved understanding of the nutritional ecology of arbuscular mycorrhizal (AM) fungi is important in understanding how tropical forests maintain high productivity on low-fertility soils. Relatively little is known about how AM fungi will respond to changes in nutrient inputs in tropical forests, which hampers our ability to assess how forest productivity will be influenced by anthropogenic change. Here we assessed the influence of long-term inorganic and organic nutrient additions and nutrient depletion on AM fungi, using two adjacent experiments in a lowland tropical forest in Panama. We characterised AM fungal communities in soil and roots using 454-pyrosequencing, and quantified AM fungal abundance using microscopy and a lipid biomarker. Phosphorus and nitrogen addition reduced the abundance of AM fungi to a similar extent, but affected community composition in different ways. Nutrient depletion (removal of leaf litter) had a pronounced effect on AM fungal community composition, affecting nearly as many OTUs as phosphorus addition. The addition of nutrients in organic form (leaf litter) had little effect on any AM fungal parameter. Soil AM fungal communities responded more strongly to changes in nutrient availability than communities in roots. This suggests that the 'dual niches' of AM fungi in soil versus roots are structured to different degrees by abiotic environmental filters, and biotic filters imposed by the plant host. Our findings indicate that AM fungal communities are fine-tuned to nutrient regimes, and support future studies aiming to link AM fungal community dynamics with ecosystem function.
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Affiliation(s)
- Merlin Sheldrake
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK.
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama.
| | | | - Scott Mangan
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
- Department of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Daniel Revillini
- Department of Biological Sciences, Northern Arizona University, PO BOX 5640, Flagstaff, AZ, 86011, USA
| | - Emma J Sayer
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
- Lancaster Environment Centre, Lancaster University, Lancaster, LA1 4YQ, UK
| | | | - Erik Verbruggen
- Research Group Plants and Ecosystems (PLECO), Department of Biology, University of Antwerp, Wilrijk, Belgium
| | - Edmund V J Tanner
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EA, UK
| | - Benjamin L Turner
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
| | - S Joseph Wright
- Smithsonian Tropical Research Institute, Apartado 0843-03092, Balboa, Ancón, Republic of Panama
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39
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Lugo MA, Menoyo E, Allione LR, Negritto MA, Henning JA, Anton AM. Arbuscular mycorrhizas and dark septate endophytes associated with grasses from the Argentine Puna. Mycologia 2018; 110:654-665. [DOI: 10.1080/00275514.2018.1492846] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Mónica A. Lugo
- Laboratorio de Micología, Diversidad e Interacciones Fúngicas, Área de Ecología, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Box 4, 2do. Piso, Bloque I, Rectorado UNSL, San Luis, Argentina
- IMIBIO-SL-CONICET, Universidad Nacional de San Luis, Ejército de los Andes 950, 5700, San Luis, Argentina
| | - Eugenia Menoyo
- Laboratorio de Micología, Diversidad e Interacciones Fúngicas, Área de Ecología, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Box 4, 2do. Piso, Bloque I, Rectorado UNSL, San Luis, Argentina
- GEA-IMASL-CONICET, Universidad Nacional de San Luis, San Luis, Argentina
| | - Lucía Risio Allione
- Laboratorio de Micología, Diversidad e Interacciones Fúngicas, Área de Ecología, Facultad de Química, Bioquímica y Farmacia, Universidad Nacional de San Luis, Box 4, 2do. Piso, Bloque I, Rectorado UNSL, San Luis, Argentina
- IMIBIO-CONICET, Universidad Nacional de San Luis, San Luis, Argentina
| | - María A. Negritto
- Facultad de Ciencias Básicas, Universidad del Magdalena, Carrera 32 No. 22-08, Apartado Postal 2-1-21630, Santa Marta, Colombia
| | - Jeremiah A. Henning
- Department of Ecology & Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996
| | - Ana M. Anton
- IMBIV-CONICET, Universidad Nacional de Córdoba, CC 495, 5000 Córdoba, Argentina
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40
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Sepp SK, Jairus T, Vasar M, Zobel M, Öpik M. Effects of land use on arbuscular mycorrhizal fungal communities in Estonia. MYCORRHIZA 2018; 28:259-268. [PMID: 29387979 DOI: 10.1007/s00572-018-0822-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 01/12/2018] [Indexed: 06/07/2023]
Abstract
Arbuscular mycorrhizal (AM) fungal communities vary across habitat types, as well as across different land use types. Most relevant research, however, has focused on agricultural or other severely human-impacted ecosystems. Here, we compared AM fungal communities across six habitat types: calcareous grassland, overgrown ungrazed calcareous grassland, wooded meadow, farmyard lawn, boreonemoral forest, and boreonemoral forest clear-cut, exhibiting contrasting modes of land use. AM fungi in the roots of a single host plant species, Prunella vulgaris, and in its rhizosphere soil were identified using 454-sequencing from a total of 103 samples from 12 sites in Estonia. Mean AM fungal taxon richness per sample did not differ among habitats. AM fungal community composition, however, was significantly different among habitat types. Both abandonment and land use intensification (clearcutting; trampling combined with frequent mowing) changed AM fungal community composition. The AM fungal communities in different habitat types were most similar in the roots of the single host plant species and most distinct in soil samples, suggesting a non-random pattern in host-fungal taxon interactions. The results show that AM fungal taxon composition is driven by habitat type and land use intensity, while the plant host may act as an additional filter between the available and realized AM fungal species pool.
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Affiliation(s)
- Siim-Kaarel Sepp
- Department of Botany, University of Tartu, 40 Lai Street, 51005, Tartu, Estonia.
| | - Teele Jairus
- Department of Botany, University of Tartu, 40 Lai Street, 51005, Tartu, Estonia
| | - Martti Vasar
- Department of Botany, University of Tartu, 40 Lai Street, 51005, Tartu, Estonia
| | - Martin Zobel
- Department of Botany, University of Tartu, 40 Lai Street, 51005, Tartu, Estonia
| | - Maarja Öpik
- Department of Botany, University of Tartu, 40 Lai Street, 51005, Tartu, Estonia
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41
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Trogisch S, Schuldt A, Bauhus J, Blum JA, Both S, Buscot F, Castro-Izaguirre N, Chesters D, Durka W, Eichenberg D, Erfmeier A, Fischer M, Geißler C, Germany MS, Goebes P, Gutknecht J, Hahn CZ, Haider S, Härdtle W, He JS, Hector A, Hönig L, Huang Y, Klein AM, Kühn P, Kunz M, Leppert KN, Li Y, Liu X, Niklaus PA, Pei Z, Pietsch KA, Prinz R, Proß T, Scherer-Lorenzen M, Schmidt K, Scholten T, Seitz S, Song Z, Staab M, von Oheimb G, Weißbecker C, Welk E, Wirth C, Wubet T, Yang B, Yang X, Zhu CD, Schmid B, Ma K, Bruelheide H. Toward a methodical framework for comprehensively assessing forest multifunctionality. Ecol Evol 2017; 7:10652-10674. [PMID: 29299246 PMCID: PMC5743643 DOI: 10.1002/ece3.3488] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2017] [Revised: 08/27/2017] [Accepted: 09/02/2017] [Indexed: 01/30/2023] Open
Abstract
Biodiversity-ecosystem functioning (BEF) research has extended its scope from communities that are short-lived or reshape their structure annually to structurally complex forest ecosystems. The establishment of tree diversity experiments poses specific methodological challenges for assessing the multiple functions provided by forest ecosystems. In particular, methodological inconsistencies and nonstandardized protocols impede the analysis of multifunctionality within, and comparability across the increasing number of tree diversity experiments. By providing an overview on key methods currently applied in one of the largest forest biodiversity experiments, we show how methods differing in scale and simplicity can be combined to retrieve consistent data allowing novel insights into forest ecosystem functioning. Furthermore, we discuss and develop recommendations for the integration and transferability of diverse methodical approaches to present and future forest biodiversity experiments. We identified four principles that should guide basic decisions concerning method selection for tree diversity experiments and forest BEF research: (1) method selection should be directed toward maximizing data density to increase the number of measured variables in each plot. (2) Methods should cover all relevant scales of the experiment to consider scale dependencies of biodiversity effects. (3) The same variable should be evaluated with the same method across space and time for adequate larger-scale and longer-time data analysis and to reduce errors due to changing measurement protocols. (4) Standardized, practical and rapid methods for assessing biodiversity and ecosystem functions should be promoted to increase comparability among forest BEF experiments. We demonstrate that currently available methods provide us with a sophisticated toolbox to improve a synergistic understanding of forest multifunctionality. However, these methods require further adjustment to the specific requirements of structurally complex and long-lived forest ecosystems. By applying methods connecting relevant scales, trophic levels, and above- and belowground ecosystem compartments, knowledge gain from large tree diversity experiments can be optimized.
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Affiliation(s)
- Stefan Trogisch
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
| | - Andreas Schuldt
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
| | - Jürgen Bauhus
- Chair of Silviculture Faculty of Environment and Natural Resources University of Freiburg Freiburg Germany
| | - Juliet A Blum
- Institute of Plant Sciences University of Bern Bern Switzerland
| | - Sabine Both
- Institute of Biological and Environmental Sciences University of Aberdeen Aberdeen UK
| | - François Buscot
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Department of Soil Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | - Nadia Castro-Izaguirre
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | | | - Walter Durka
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Department of Community Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | - David Eichenberg
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Institute of Biology University of Leipzig Leipzig Germany
| | - Alexandra Erfmeier
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Institute for Ecosystem Research/Geobotany Kiel University Kiel Germany
| | - Markus Fischer
- Institute of Plant Sciences University of Bern Bern Switzerland
| | - Christian Geißler
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Markus S Germany
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Institute for Ecosystem Research/Geobotany Kiel University Kiel Germany
| | - Philipp Goebes
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Jessica Gutknecht
- Department of Soil Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany.,Department of Soil, Water, and Climate University of Minnesota, Twin Cities Saint Paul MN USA
| | - Christoph Zacharias Hahn
- Department of Community Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | - Sylvia Haider
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
| | - Werner Härdtle
- Institute of Ecology Leuphana University of Lüneburg Lüneburg Germany
| | - Jin-Sheng He
- Department of Ecology College of Urban and Environmental Sciences Key Laboratory for Earth Surface Processes of the Ministry of Education Peking University Beijing China
| | - Andy Hector
- Department of Plant Sciences University of Oxford Oxford UK
| | - Lydia Hönig
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany
| | - Yuanyuan Huang
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | - Alexandra-Maria Klein
- Nature Conservation and Landscape Ecology Faculty of Environment and Natural Resources University of Freiburg Freiburg Germany
| | - Peter Kühn
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Matthias Kunz
- Institute of General Ecology and Environmental Protection Technische Universität Dresden Tharandt Germany
| | - Katrin N Leppert
- Faculty of Biology University of Freiburg Geobotany, Freiburg Germany
| | - Ying Li
- Faculty of Soil and Water Conservation Beijing Forestry University Haidian District Beijing China
| | - Xiaojuan Liu
- State Key Laboratory of Vegetation and Environmental Change Institute of Botany Chinese Academy of Sciences Beijing China
| | - Pascal A Niklaus
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | - Zhiqin Pei
- Department of Soil Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | | | - Ricarda Prinz
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,Senckenberg Biodiversity and Climate Research Centre (BIK-F) Frankfurt am Main Germany
| | - Tobias Proß
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
| | | | - Karsten Schmidt
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Thomas Scholten
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Steffen Seitz
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Zhengshan Song
- Institute of Geography, Soil Science and Geomorphology University of Tübingen Tübingen Germany
| | - Michael Staab
- Nature Conservation and Landscape Ecology Faculty of Environment and Natural Resources University of Freiburg Freiburg Germany
| | - Goddert von Oheimb
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Institute of General Ecology and Environmental Protection Technische Universität Dresden Tharandt Germany
| | - Christina Weißbecker
- Department of Soil Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | - Erik Welk
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
| | - Christian Wirth
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Institute of Biology University of Leipzig Leipzig Germany
| | - Tesfaye Wubet
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany.,Department of Soil Ecology Helmholtz Centre for Environmental Research - UFZ Halle (Saale) Germany
| | - Bo Yang
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,Key Laboratory of Speciality Plant Resources of Jiangxi Province Jingdezhen University Jingdezhen China
| | - Xuefei Yang
- Kunming Institute of Botany Chinese Academy of Sciences Kunming China
| | - Chao-Dong Zhu
- Institute of Zoology Chinese Academy of Sciences Beijing China
| | - Bernhard Schmid
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
| | - Keping Ma
- State Key Laboratory of Vegetation and Environmental Change Institute of Botany Chinese Academy of Sciences Beijing China
| | - Helge Bruelheide
- Institute of Biology/Geobotany and Botanical Garden Martin Luther University Halle-Wittenberg Halle (Saale) Germany.,German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany
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42
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Mycorrhizal fungi show regular community compositions in natural ecosystems. ISME JOURNAL 2017; 12:380-385. [PMID: 28984847 PMCID: PMC5776451 DOI: 10.1038/ismej.2017.169] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 08/28/2017] [Accepted: 09/04/2017] [Indexed: 11/08/2022]
Abstract
Dissimilarity overlap curve analysis has shown that 'universality' is a common feature in many complex microbial communities, suggesting that the same taxa interact in a similar manner when shared between communities. We present evidence that arbuscular mycorrhizal fungi, common plant root symbionts, show universal community compositions in natural ecosystems and that this pattern is conserved even at larger spatial scales. However, universality was not detected in agricultural ecosystems potentially implying that agricultural symbiont communities are formed in a different manner.
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43
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da Silva IR, de Souza FA, da Silva DKA, Oehl F, Maia LC. Patterns of Arbuscular Mycorrhizal Fungal Distribution on Mainland and Island Sandy Coastal Plain Ecosystems in Brazil. MICROBIAL ECOLOGY 2017; 74:654-669. [PMID: 28401262 DOI: 10.1007/s00248-017-0979-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2017] [Accepted: 03/28/2017] [Indexed: 06/07/2023]
Abstract
Although sandy coastal plains are important buffer zones to protect the coast line and maintain biological diversity and ecosystem services, these ecosystems have been endangered by anthropogenic activities. Thus, information on coastal biodiversity and forces shaping coastal biological diversity are extremely important for effective conservation strategies. In this study, we aimed to compare arbuscular mycorrhizal (AM) fungal communities from soil samples collected on the mainland and nearby islands located in Brazilian sandy coastal plain ecosystems (Restingas) to get information about AM fungal biogeography and identify factors shaping these communities. Soil samples were collected in 2013 and 2014 on the beachfront of the tropical sandy coastal plain at six sites (three island and three mainland locations) across the northeast, southeast, and south regions of Brazil. Overall, we recorded 53 AM fungal species from field and trap culture samples. The richness and diversity of AM fungal species did not differ between mainland and island locations, but AM fungal community assemblages were different between mainland and island environments and among most sites sampled. Glomeromycota communities registered from island samples showed higher heterogeneity than communities from mainland samples. Sandy coastal plains harbor diverse AM fungal communities structured by climatic, edaphic, and spatial factors, while the distance from the colonizing source (mainland environments) does not strongly affect the AM fungal communities in Brazilian coastal environments.
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Affiliation(s)
- Iolanda Ramalho da Silva
- Programa de Pós-Graduação em Biologia de Fungos, Universidade Federal de Pernambuco, Av. da Engenharia, s/n, Cidade Universitária, CEP 50740-600, Recife, PE, Brazil.
| | - Francisco Adriano de Souza
- Embrapa Milho e Sorgo, Núcleo de Biologia Aplicada, Rod. MG 424 KM 45, Bairro Esmeraldas, s/n, Caixa Postal 285, CEP 35701-970, Sete Lagoas, MG, Brazil
| | - Danielle Karla Alves da Silva
- Laboratório de Microbiologia, Universidade Federal do Vale do São Francisco, Campus de Ciências Agrárias, Rodovia BR 407, Km 12, Lote 543, Projeto de Irrigação Nilo Coelho, s/n, "C1", CEP 56300-990, Petrolina, PE, Brazil
| | - Fritz Oehl
- Agroscope, Ecotoxicology, Schloss 1, CH-8820, Wädenswil, Switzerland
| | - Leonor Costa Maia
- Programa de Pós-Graduação em Biologia de Fungos, Universidade Federal de Pernambuco, Av. da Engenharia, s/n, Cidade Universitária, CEP 50740-600, Recife, PE, Brazil
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44
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Weisser WW, Roscher C, Meyer ST, Ebeling A, Luo G, Allan E, Beßler H, Barnard RL, Buchmann N, Buscot F, Engels C, Fischer C, Fischer M, Gessler A, Gleixner G, Halle S, Hildebrandt A, Hillebrand H, de Kroon H, Lange M, Leimer S, Le Roux X, Milcu A, Mommer L, Niklaus PA, Oelmann Y, Proulx R, Roy J, Scherber C, Scherer-Lorenzen M, Scheu S, Tscharntke T, Wachendorf M, Wagg C, Weigelt A, Wilcke W, Wirth C, Schulze ED, Schmid B, Eisenhauer N. Biodiversity effects on ecosystem functioning in a 15-year grassland experiment: Patterns, mechanisms, and open questions. Basic Appl Ecol 2017. [DOI: 10.1016/j.baae.2017.06.002] [Citation(s) in RCA: 212] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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45
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Bouffaud ML, Bragalini C, Berruti A, Peyret-Guzzon M, Voyron S, Stockinger H, van Tuinen D, Lumini E, Wipf D, Plassart P, Lemanceau P, Bianciotto V, Redecker D, Girlanda M. Arbuscular mycorrhizal fungal community differences among European long-term observatories. MYCORRHIZA 2017; 27:331-343. [PMID: 27942957 DOI: 10.1007/s00572-016-0753-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Accepted: 11/25/2016] [Indexed: 06/06/2023]
Abstract
Arbuscular mycorrhizal fungal (AMF) communities have been demonstrated to respond to a variety of biotic and abiotic factors, including various aspects of land management. Numerous studies have specifically addressed the impact of land use on AMF communities, but usually have been confined to one or a few sites. In this study, soil AMF assemblages were described in four different long-term observatories (LTOs) across Europe, each of which included a site-specific high-intensity and a low-intensity land use. AMF communities were characterized on the basis of 454 sequencing of the internal transcribed spacer 2 (ITS2) rDNA region. The primary goals of this study were (i) to determine the main factors that shape AMF communities in differentially managed sites in Europe and (ii) to identify individual AMF taxa or combinations of taxa suitable for use as biomarkers of land use intensification. AMF communities were distinct among LTOs, and we detected significant effects of management type and soil properties within the sites, but not across all sites. Similarly, indicator species were identified for specific LTOs and land use types but not universally for high- or low-intensity land uses. Different subsets of soil properties, including several chemical and physical variables, were found to be able to explain an important fraction of AMF community variation alone or together with other examined factors in most sites. The important factors were different from those for other microorganisms studied in the same sites, highlighting particularities of AMF biology.
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Affiliation(s)
- M-L Bouffaud
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
- Helmholtz Center for Environmental Research - UFZ, Halle, Germany, German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
| | - C Bragalini
- Department of Life Sciences and System Biology (DBios), University of Torino, 25 Viale Mattioli, 10125, Torino, Italy
- Université Claude Bernard Lyon1, Lyon, France
| | - A Berruti
- CNR-Istituto per la Protezione Sostenibile delle Piante, UOS Turin (CNR-IPSP), Torino, Italy
| | - M Peyret-Guzzon
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - S Voyron
- Department of Life Sciences and System Biology (DBios), University of Torino, 25 Viale Mattioli, 10125, Torino, Italy
| | - H Stockinger
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - D van Tuinen
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - E Lumini
- CNR-Istituto per la Protezione Sostenibile delle Piante, UOS Turin (CNR-IPSP), Torino, Italy
| | - D Wipf
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - P Plassart
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - P Lemanceau
- Agroécologie, AgroSup Dijon, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France
| | - V Bianciotto
- CNR-Istituto per la Protezione Sostenibile delle Piante, UOS Turin (CNR-IPSP), Torino, Italy
| | - D Redecker
- Agroécologie, AgroSup Dijon, CNRS, INRA, Univ. Bourgogne Franche-Comté, F-21000, Dijon, France.
| | - M Girlanda
- Department of Life Sciences and System Biology (DBios), University of Torino, 25 Viale Mattioli, 10125, Torino, Italy.
- Université Claude Bernard Lyon1, Lyon, France.
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46
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Xu X, Chen C, Zhang Z, Sun Z, Chen Y, Jiang J, Shen Z. The influence of environmental factors on communities of arbuscular mycorrhizal fungi associated with Chenopodium ambrosioides revealed by MiSeq sequencing investigation. Sci Rep 2017; 7:45134. [PMID: 28327631 PMCID: PMC5361092 DOI: 10.1038/srep45134] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 02/17/2017] [Indexed: 11/09/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) affect multiple ecosystem functions and processes, the assemblages of which vary across ecosystems. However, the influences of environmental factors on AMF communities which may shape these communities are still largely unknown. In this study, AMF communities from roots and rhizosphere soils of Chenopodium ambrosioides in different natural soils were investigated. The root habitat showed significantly smaller numbers of OTUs and lower community richness compared to the rhizosphere soil habitat. Most OTUs in the root habitat were shared by the soil habitat from the same sampling site, indicating that rhizosphere soils represent a pool of AMF species, a fraction of which is recruited by plants. Most of the AMF in root habitats were Glomeraceae, suggesting recruitment preferences of AMF by plants. The relative contributions of environmental factors to explain variations in AMF community composition and phylogenetic structure were assessed. The results revealed soil properties predominantly explained the variation, followed by geographic and climate parameters which explained a small fraction independently, while the host plant showed few explanations. Overall, our results indicated that soil and root habitats as well as soil characters, especially pH, nitrogen and micronutrients (Zn and Cu) affected AMF communities significantly.
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Affiliation(s)
- Xihui Xu
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Chen Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Zhou Zhang
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Zehua Sun
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Yahua Chen
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Jiandong Jiang
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
| | - Zhenguo Shen
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, People’s Republic of China
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Wicaksono CY, Aguirre-Guiterrez J, Nouhra E, Pastor N, Raes N, Pacheco S, Geml J. Contracting montane cloud forests: a case study of the Andean alder (Alnus acuminata) and associated fungi in the Yungas. Biotropica 2016. [DOI: 10.1111/btp.12394] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
| | - Jesús Aguirre-Guiterrez
- Biodiversity Dynamics Research Group; Naturalis Biodiversity Center; Vondellaan 55, P.O. Box 9517 2300 RA Leiden The Netherlands
- Institute for Biodiversity and Ecosystem Dynamics (IBED), Computational Geo-Ecology; University of Amsterdam; Science Park 904 1098 HX Amsterdam The Netherlands
| | - Eduardo Nouhra
- Instituto Multidisciplinario de Biología Vegetal (IMBIV); CONICET; Universidad Nacional de Córdoba; CC 495 5000 Córdoba Argentina
| | - Nicolás Pastor
- Instituto Multidisciplinario de Biología Vegetal (IMBIV); CONICET; Universidad Nacional de Córdoba; CC 495 5000 Córdoba Argentina
| | - Niels Raes
- Biodiversity Dynamics Research Group; Naturalis Biodiversity Center; Vondellaan 55, P.O. Box 9517 2300 RA Leiden The Netherlands
| | - Silvia Pacheco
- Fundación ProYungas; Perú 1180, 4107 Yerba Buena Tucumán Argentina
| | - József Geml
- Faculty of Science; Leiden University; P.O. Box 9502 2300 RA Leiden The Netherlands
- Biodiversity Dynamics Research Group; Naturalis Biodiversity Center; Vondellaan 55, P.O. Box 9517 2300 RA Leiden The Netherlands
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48
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Tipton AG, Miller‐Struttmann NE, Galen C. Finding partners in a habitat mosaic: Patch history and size mediate host colonization by arbuscular mycorrhizal fungi. Ecosphere 2016. [DOI: 10.1002/ecs2.1570] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Affiliation(s)
- Alice G. Tipton
- Division of Biological Sciences University of Missouri 105 Tucker Hall Columbia Missouri 65211 USA
- Kansas Biological Survey University of Kansas 2101 Constant Avenue Lawrence Kansas 66047 USA
| | - Nicole E. Miller‐Struttmann
- Division of Biological Sciences University of Missouri 105 Tucker Hall Columbia Missouri 65211 USA
- Biological Sciences Department Webster University Webster Hall Rm 13, 470 East Lockwood Avenue St. Louis Missouri 63119 USA
| | - Candace Galen
- Division of Biological Sciences University of Missouri 105 Tucker Hall Columbia Missouri 65211 USA
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49
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Slaughter LC, McCulley RL. Aboveground Epichloë coenophiala-Grass Associations Do Not Affect Belowground Fungal Symbionts or Associated Plant, Soil Parameters. MICROBIAL ECOLOGY 2016; 72:682-691. [PMID: 27502203 DOI: 10.1007/s00248-016-0828-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2016] [Accepted: 07/27/2016] [Indexed: 06/06/2023]
Abstract
Cool season grasses host multiple fungal symbionts, such as aboveground Epichloë endophytes and belowground arbuscular mycorrhizal fungi (AMF) and dark septate endophytes (DSEs). Asexual Epichloë endophytes can influence root colonization by AMF, but the type of interaction-whether antagonistic or beneficial-varies. In Schedonorus arundinaceus (tall fescue), Epichloë coenophiala can negatively affect AMF, which may impact soil properties and ecosystem function. Within field plots of S. arundinaceus that were either E. coenophiala-free (E-), infected with the common, mammal-toxic E. coenophiala strain (CTE+), or infected with one of two novel, non-toxic strains (AR542 NTE+ and AR584 NTE+), we hypothesized that (1) CTE+ would decrease AMF and DSE colonization rates and reduce soil extraradical AMF hyphae compared to E- or NTE+, and (2) this would lead to E- and NTE+ plots having greater water stable soil aggregates and C than CTE+. E. coenophiala presence and strain did not significantly alter AMF or DSE colonization, nor did it affect extraradical AMF hypha length, soil aggregates, or aggregate-associated C and N. Soil extraradical AMF hypha length negatively correlated with root AMF colonization. Our results contrast with previous demonstrations that E. coenophiala symbiosis inhibits belowground AMF communities. In our mesic, relatively nutrient-rich grassland, E. coenophiala symbiosis did not antagonize belowground symbionts, regardless of strain. Manipulating E. coenophiala strains within S. arundinaceus may not significantly alter AMF communities and nutrient cycling, yet we must further explore these relationships under different soils and environmental conditions given that symbiont interactions can be important in determining ecosystem response to global change.
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Affiliation(s)
- Lindsey C Slaughter
- N-222N Agricultural Science Center North, Department of Plant and Soil Sciences, University of Kentucky, 1100 South Limestone, Lexington, KY, 40546-0091, USA.
| | - Rebecca L McCulley
- N-222N Agricultural Science Center North, Department of Plant and Soil Sciences, University of Kentucky, 1100 South Limestone, Lexington, KY, 40546-0091, USA
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50
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Vályi K, Mardhiah U, Rillig MC, Hempel S. Community assembly and coexistence in communities of arbuscular mycorrhizal fungi. THE ISME JOURNAL 2016; 10:2341-51. [PMID: 27093046 PMCID: PMC5030697 DOI: 10.1038/ismej.2016.46] [Citation(s) in RCA: 95] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Revised: 02/15/2016] [Accepted: 02/17/2016] [Indexed: 02/04/2023]
Abstract
Arbuscular mycorrhizal fungi are asexual, obligately symbiotic fungi with unique morphology and genomic structure, which occupy a dual niche, that is, the soil and the host root. Consequently, the direct adoption of models for community assembly developed for other organism groups is not evident. In this paper we adapted modern coexistence and assembly theory to arbuscular mycorrhizal fungi. We review research on the elements of community assembly and coexistence of arbuscular mycorrhizal fungi, highlighting recent studies using molecular methods. By addressing several points from the individual to the community level where the application of modern community ecology terms runs into problems when arbuscular mycorrhizal fungi are concerned, we aim to account for these special circumstances from a mycocentric point of view. We suggest that hierarchical spatial structure of arbuscular mycorrhizal fungal communities should be explicitly taken into account in future studies. The conceptual framework we develop here for arbuscular mycorrhizal fungi is also adaptable for other host-associated microbial communities.
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Affiliation(s)
- Kriszta Vályi
- Department of Plant Ecology, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Ulfah Mardhiah
- Department of Plant Ecology, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Matthias C Rillig
- Department of Plant Ecology, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Stefan Hempel
- Department of Plant Ecology, Institut für Biologie, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
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