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Ramos-Muñoz M, Blanco-Sánchez M, Pías B, Escudero A, Matesanz S. Transgenerational plasticity to drought: contrasting patterns of non-genetic inheritance in two semi-arid Mediterranean shrubs. ANNALS OF BOTANY 2024; 134:101-116. [PMID: 38488820 PMCID: PMC11161564 DOI: 10.1093/aob/mcae039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2024] [Accepted: 03/14/2024] [Indexed: 06/09/2024]
Abstract
BACKGROUND AND AIMS Intra- and transgenerational plasticity may provide substantial phenotypic variation to cope with environmental change. Since assessing the unique contribution of the maternal environment to the offspring phenotype is challenging in perennial, outcrossing plants, little is known about the evolutionary and ecological implications of transgenerational plasticity and its persistence over the life cycle in these species. We evaluated how intra- and transgenerational plasticity interplay to shape the adaptive responses to drought in two perennial Mediterranean shrubs. METHODS We used a novel common garden approach that reduced within-family genetic variation in both the maternal and offspring generations by growing the same maternal individual in two contrasting watering environments, well-watered and drought, in consecutive years. We then assessed phenotypic differences at the reproductive stage between offspring reciprocally grown in the same environments. KEY RESULTS Maternal drought had an effect on offspring performance only in Helianthemum squamatum. Offspring of drought-stressed plants showed more inflorescences, less sclerophyllous leaves and higher growth rates in both watering conditions, and heavier seeds under drought, than offspring of well-watered maternal plants. Maternal drought also induced similar plasticity patterns across maternal families, showing a general increase in seed mass in response to offspring drought, a pattern not observed in the offspring of well-watered plants. In contrast, both species expressed immediate adaptive plasticity, and the magnitude of intragenerational plasticity was larger than the transgenerational plastic responses. CONCLUSIONS Our results highlight that adaptive effects associated with maternal drought can persist beyond the seedling stage and provide evidence of species-level variation in the expression of transgenerational plasticity. Such differences between co-occurring Mediterranean species in the prevalence of this form of non-genetic inheritance may result in differential vulnerability to climate change.
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Affiliation(s)
- Marina Ramos-Muñoz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Spain
| | - Mario Blanco-Sánchez
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Spain
| | - Beatriz Pías
- Departamento de Biodiversidad, Ecología y Evolución, Universidad Complutense de Madrid, C/José Antonio Nováis 2, 28040, Madrid, Spain
| | - Adrián Escudero
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Spain
| | - Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos, C/Tulipán s/n, 28933 Móstoles, Spain
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2
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Beveridge FC, Williams A, Cave R, Kalaipandian S, Haque MM, Adkins SW. Environmental Effects during Early Life-History Stages and Seed Development on Seed Functional Traits of an Australian Native Legume Species. BIOLOGY 2024; 13:148. [PMID: 38534418 DOI: 10.3390/biology13030148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 02/23/2024] [Accepted: 02/26/2024] [Indexed: 03/28/2024]
Abstract
Understanding how seed functional traits interact with environmental factors to determine seedling recruitment is critical to assess the impact of climate change on ecosystem restoration. This study focused on the effects of environmental factors on the mother plant during early plant life history stages and during seed development. Desmodium brachypodum A. Gray (large tick trefoil, Fabaceae) was used as a model species. Firstly, this study analyzed seed germination traits in response to temperature and moisture stress. Secondly, it investigated how seed burial depth interacts with temperature and soil moisture to influence seedling emergence traits. Finally, it determined if contrasting levels of post-anthesis soil moisture could result in changes in D. brachypodum reproductive biology and seed and seedling functional traits. The results showed that elevated temperature and moisture stress interacted to significantly reduce the seed germination and seedling emergence (each by >50%), while the seed burial improved the seedling emergence. Post-anthesis soil moisture stress negatively impacted the plant traits, reducing the duration of the reproductive phenology stage (by 9 days) and seed production (by almost 50%). Unexpectedly, soil moisture stress did not affect most seed or seedling traits. In conclusion, elevated temperatures combined with low soil moisture caused significant declines in seed germination and seedling emergence. On the other hand, the reproductive output of D. brachypodum had low seed variability under soil moisture stress, which might be useful when sourcing seeds from climates with high variability. Even so, a reduction in seed quantity under maternal moisture stress can impact the long-term survival of restored plant populations.
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Affiliation(s)
- Fernanda C Beveridge
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
| | - Alwyn Williams
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
| | - Robyn Cave
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
| | - Sundaravelpandian Kalaipandian
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
- Department of Bioengineering, Saveetha Institute of Medical and Technical Sciences (SIMATS), Saveetha School of Engineering, Chennai 602105, India
| | - Mirza M Haque
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
| | - Steve W Adkins
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, QLD 4343, Australia
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3
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Liu L, Xie Y, Yahaya BS, Wu F. GIGANTEA Unveiled: Exploring Its Diverse Roles and Mechanisms. Genes (Basel) 2024; 15:94. [PMID: 38254983 PMCID: PMC10815842 DOI: 10.3390/genes15010094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 01/09/2024] [Accepted: 01/10/2024] [Indexed: 01/24/2024] Open
Abstract
GIGANTEA (GI) is a conserved nuclear protein crucial for orchestrating the clock-associated feedback loop in the circadian system by integrating light input, modulating gating mechanisms, and regulating circadian clock resetting. It serves as a core component which transmits blue light signals for circadian rhythm resetting and overseeing floral initiation. Beyond circadian functions, GI influences various aspects of plant development (chlorophyll accumulation, hypocotyl elongation, stomatal opening, and anthocyanin metabolism). GI has also been implicated to play a pivotal role in response to stresses such as freezing, thermomorphogenic stresses, salinity, drought, and osmotic stresses. Positioned at the hub of complex genetic networks, GI interacts with hormonal signaling pathways like abscisic acid (ABA), gibberellin (GA), salicylic acid (SA), and brassinosteroids (BRs) at multiple regulatory levels. This intricate interplay enables GI to balance stress responses, promoting growth and flowering, and optimize plant productivity. This review delves into the multifaceted roles of GI, supported by genetic and molecular evidence, and recent insights into the dynamic interplay between flowering and stress responses, which enhance plants' adaptability to environmental challenges.
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Affiliation(s)
- Ling Liu
- Faculty of Agriculture, Forestry and Food Engineering, Yibin University, Yibin 644000, China;
| | - Yuxin Xie
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (Y.X.); (B.S.Y.)
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, Chengdu 611130, China
| | - Baba Salifu Yahaya
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (Y.X.); (B.S.Y.)
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, Chengdu 611130, China
| | - Fengkai Wu
- Maize Research Institute, Sichuan Agricultural University, Chengdu 611130, China; (Y.X.); (B.S.Y.)
- Key Laboratory of Biology and Genetic Improvement of Maize in Southwest Region, Ministry of Agriculture, Chengdu 611130, China
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4
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Sharma MK, Hopak NE, Chawla A. Alpine plant species converge towards adopting elevation-specific resource-acquisition strategy in response to experimental early snow-melting. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 907:167906. [PMID: 37858830 DOI: 10.1016/j.scitotenv.2023.167906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 10/14/2023] [Accepted: 10/16/2023] [Indexed: 10/21/2023]
Abstract
Snow-melt is one of the important factors limiting growth and survival of alpine plants. Changes in snow-melt timing have profound effects on eco-physiological characteristics of alpine plant species through alterations in growing season length. Here, we conducted a field experiment and studied species response to experimentally induced early snow-melting (ES) (natural vs. early) at an alpine site (Rohtang) in the western Himalaya region. Eco-physiological response of eight snow-bed restricted alpine plant species from different elevations (lower: 3850 m and upper: 4150 m amsl) and belonging to contrasting resource acquisition strategies (conservative and acquisitive) were studied after 2-years (2019 & 2020) of initiating ES field experiment. We estimated the functional traits related to leaf economic spectrum and physiological performance and assessed their pattern of phenotypic plasticity. Analysis by linear mixed effect model showed that both the 'conservative' and 'acquisitive' species had responded to ES with significant effects on species specific leaf area, leaf dry matter content, leaf thickness, leaf water content and sugar content. Our results also revealed that ES treatment induced significant increase in leaf C/N ratio (10.57 % to 13.65 %) and protein content (15.85 % to 20.76 %) at both the elevations, irrespective of species groups. The phenotypic plasticity was found to be low and was essentially species-specific. However, for leaf protein content, the upper elevation species exhibited a higher phenotypic plasticity (0.43 ± 0.18) than the lower elevation species (0.31 ± 0.21). Interestingly, we found that irrespective of species unique functional strategy, species adapt to perform more conservative at lower elevation and more acquisitive at upper elevation, in response to ES. We conclude that plants occurring at contrasting elevations respond differentially to ES. However, species showed capacity for short-term acclimation to future environmental conditions, but may be vulnerable, if their niche is occupied by new species with greater phenotypic plasticity and a superior competitive ability.
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Affiliation(s)
- Manish K Sharma
- Environmental Technology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, Himachal Pradesh 176 061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India; Centre for High Altitude Biology (CeHAB), Research Centre of CSIR-IHBT, Ribling, P.O. Tandi, District Lahaul and Spiti, Himachal Pradesh 175132, India
| | - Nang Elennie Hopak
- Environmental Technology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, Himachal Pradesh 176 061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India; Centre for High Altitude Biology (CeHAB), Research Centre of CSIR-IHBT, Ribling, P.O. Tandi, District Lahaul and Spiti, Himachal Pradesh 175132, India
| | - Amit Chawla
- Environmental Technology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, Himachal Pradesh 176 061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201 002, India; Centre for High Altitude Biology (CeHAB), Research Centre of CSIR-IHBT, Ribling, P.O. Tandi, District Lahaul and Spiti, Himachal Pradesh 175132, India.
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5
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Schepers JR, Heblack J, Willi Y. Negative interaction effect of heat and drought stress at the warm end of species distribution. Oecologia 2024; 204:173-185. [PMID: 38253704 PMCID: PMC10830594 DOI: 10.1007/s00442-023-05497-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 12/10/2023] [Indexed: 01/24/2024]
Abstract
Geographic range limits of species are often a reflection of their ecological niche limits. In many organisms, important niche limits that coincide with distribution limits are warm and warm-dry conditions. We investigated the effects of heat and drought, as they can occur at the warm end of distribution. In a greenhouse experiment, we raised North American Arabidopsis lyrata from the centre of its distribution as well as from low- and high-latitude limits under average and extreme conditions. We assessed plant growth and development, as well as leaf and root functional traits, and tested for a decline in performance and selection acting on growth, leaf, and root traits. Drought and heat, when applied alone, lowered plant performance, while combined stress caused synergistically negative effects. Plants from high latitudes did not survive under combined stress, whereas plants originating from central and low latitudes had low to moderate survival, indicating divergent adaptation. Traits positively associated with survival under drought, with or without heat, were delayed and slowed growth, though plastic responses in these traits were generally antagonistic to the direction of selection. In line, higher tolerance of stress in southern populations did not involve aspects of growth but rather a higher root-to-shoot ratio and thinner leaves. In conclusion, combined heat and drought, as can occur at southern range edges and presumably more so under global change, seriously impede the long-term persistence of A. lyrata, even though they impose selection and populations may adapt, though under likely interference by considerable maladaptive plasticity.
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Affiliation(s)
- Judith R Schepers
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland.
| | - Jessica Heblack
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland
| | - Yvonne Willi
- Department of Environmental Sciences, University of Basel, 4056, Basel, Switzerland
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6
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Yao K, Zhang A, Rang B, Yang J, Liu Y, Wu Y. Hydrological niche regulation induced by different resistance strategies facilitates coexistence of P. longipes and L. communis under drought stress. PHYSIOLOGIA PLANTARUM 2023; 175:e14072. [PMID: 38148219 DOI: 10.1111/ppl.14072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Accepted: 10/14/2023] [Indexed: 12/28/2023]
Abstract
Under global warming, the availability of water resources is one of the most important factors affecting trait evolution and plant species distribution across terrestrial ecosystems, and the relationships between drought resistance strategies and the hydrological niche characteristics of plants are worth studying. We continuously monitored physiological drought response parameters such as gs , Tr , proline, soluble sugar, gene expression and activities of SOD, POD, and CAT to assess drought resistance strategies of Platycarya longipes and Lindera communis; determined plant soil hydrological niche separation by stable H and O isotope analysis; and analysed the effects of interspecific water competition by comparing the differences in morphological and physiological parameters between solo and mixed planting. Under drought stress, L. communis exhibited a drought avoidance strategy, and P. longipes exhibited a drought tolerance strategy. L. communis utilized the water within the shallow soil layer, while P. longipes mainly utilized the water in the deeper soil layer; there were fewer parameters with significant differences between the solo planting and the mixed planting of L. communis compared to P. longipes. Overall, P. longipes benefited from coexistence with L. communis under drought stress, which may be because L. communis employs a drought avoidance strategy, reducing soil water consumption in the drought environment. These results suggested that differences in functional traits or resistance strategies among species benefit species' coexistence in a community under drought stress.
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Affiliation(s)
- Kai Yao
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Aoli Zhang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Bo Rang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Junting Yang
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Yingliang Liu
- School of Life Sciences, Guizhou Normal University, Guiyang, Guizhou, China
| | - Yanyou Wu
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang, Guizhou, China
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7
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Mehravi S, Hanifei M, Gholizadeh A, Khodadadi M. Exploring the quantitative genetics of traits associated with drought tolerance and yield in Pimpinella anisum L. under different water regimes. PLANTA 2023; 257:102. [PMID: 37093410 DOI: 10.1007/s00425-023-04128-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Accepted: 03/31/2023] [Indexed: 05/03/2023]
Abstract
MAIN CONCLUSION Genetic improvement of seed yield and drought resistance could be simultaneously gained in anise when breeding for drought resistance. Improving the water use efficiency of anise is a primary objective of anise breeding programs aimed at mitigating the impacts of drought stress. This study aimed to determine the predominant mechanisms involved in drought tolerance and investigate the genetic control of associated traits with drought tolerance and higher grain yield. According to these aims, 10 half-diallel hybrids and their five parents were evaluated in both field and greenhouse lysimetric experiments under well-watered and water deficit stress conditions. The results indicated that the inheritance of grain yield is complex and affected by water deficit stress. Similar heritability and genetic architecture were detected for flowering time and percentages of photosynthate partitioned to grain (PPPG) in both well-watered and water deficit stress treatments. Significant negative genetic correlations were observed between grain yield and flowering time, root dry mass, root diameter, root volume, root number, percentages of photosynthate partitioned to shoot, and percentages of photosynthate partitioned to root. Therefore, the selection of low values of these attributes can be used to improve grain yield under drought conditions. In contrast, a positive significant genetic linkage between grain yield and PPPG, chlorophyll content, cell membrane stability, and leaf relative water content reveal selection for high values of these attributes is favored. These attributes could be used as surrogate selection criteria in the early segregating generations. The P1 parent (early ripening parent) contained key genes associated with PPPG and drought escape. It was concluded that improvement of drought tolerance and grain yield could be simultaneously achieved in anise breeding programs.
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Affiliation(s)
- Shaghayegh Mehravi
- Department of Biological Sciences, University of Western Australia, Perth, WA, 6009, Australia.
| | - Mehrdad Hanifei
- Department of Plant Genetics and Breeding, Faculty of Agriculture, Tarbiat Modares University, Tehran, 14115-336, Iran
| | - Amir Gholizadeh
- Crop and Horticultural Science Research Department, Golestan Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Gorgan, 4915677555, Iran
| | - Mostafa Khodadadi
- Seed and Plant Improvement Institute, Agricultural Research Education and Extension Organization (AREEO), Karaj, 33151-31359, Iran
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Jiranek J, Miller IF, An R, Bruns E, Metcalf CJE. Mechanistic models to meet the challenge of climate change in plant-pathogen systems. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220017. [PMID: 36744564 PMCID: PMC9900714 DOI: 10.1098/rstb.2022.0017] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Evidence that climate change will impact the ecology and evolution of individual plant species is growing. However, little, as yet, is known about how climate change will affect interactions between plants and their pathogens. Climate drivers could affect the physiology, and thus demography, and ultimately evolutionary processes affecting both plant hosts and their pathogens. Because the impacts of climate drivers may operate in different directions at different scales of infection, and, furthermore, may be nonlinear, abstracting across these processes may mis-specify outcomes. Here, we use mechanistic models of plant-pathogen interactions to illustrate how counterintuitive outcomes are possible, and we introduce how such framing may contribute to understanding climate effects on plant-pathogen systems. We discuss the evidence-base derived from wild and agricultural plant-pathogen systems that could inform such models, specifically in the direction of estimates of physiological, demographic and evolutionary responses to climate change. We conclude by providing an overview of knowledge gaps and directions for future research in this important area. This article is part of the theme issue 'Infectious disease ecology and evolution in a changing world'.
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Affiliation(s)
- Juliana Jiranek
- Department of Biology, University of Virginia, Charlottesville, VA 22904, USA.,Rocky Mountain Biological Laboratory, Crested Butte, CO 81244, USA
| | - Ian F Miller
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08450, USA.,Rocky Mountain Biological Laboratory, Crested Butte, CO 81244, USA
| | - Ruby An
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08450, USA
| | - Emme Bruns
- Department of Biology, University of Maryland, College Park, MD 20742, USA
| | - C Jessica E Metcalf
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08450, USA
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Johnson SE, Tittes S, Franks SJ. Rapid, nonparallel genomic evolution of Brassica rapa (field mustard) under experimental drought. J Evol Biol 2023; 36:550-562. [PMID: 36721268 DOI: 10.1111/jeb.14152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2022] [Revised: 09/22/2022] [Accepted: 12/08/2022] [Indexed: 02/02/2023]
Abstract
While we know that climate change can potentially cause rapid phenotypic evolution, our understanding of the genetic basis and degree of genetic parallelism of rapid evolutionary responses to climate change is limited. In this study, we combined the resurrection approach with an evolve-and-resequence design to examine genome-wide evolutionary changes following drought. We exposed genetically similar replicate populations of the annual plant Brassica rapa derived from a field population in southern California to four generations of experimental drought or watered conditions in a greenhouse. Genome-wide sequencing of ancestral and descendant population pools identified hundreds of SNPs that showed evidence of rapidly evolving in response to drought. Several of these were in stress response genes, and two were identified in a prior study of drought response in this species. However, almost all genetic changes were unique among experimental populations, indicating that the evolutionary changes were largely nonparallel, despite the fact that genetically similar replicates of the same founder population had experienced controlled and consistent selection regimes. This nonparallelism of evolution at the genetic level is potentially because of polygenetic adaptation allowing for multiple different genetic routes to similar phenotypic outcomes. Our findings help to elucidate the relationship between rapid phenotypic and genomic evolution and shed light on the degree of parallelism and predictability of genomic evolution to environmental change.
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Affiliation(s)
- Stephen E Johnson
- Department of Biological Sciences and Louis Calder Center, Fordham University, Bronx, New York, USA
| | - Silas Tittes
- Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, USA
| | - Steven J Franks
- Department of Biological Sciences and Louis Calder Center, Fordham University, Bronx, New York, USA
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Feng C, Zou S, Zhang J. Genetic architecture of microhabitat adaptation traits in a pair of sympatric Primulina species. BIOTECHNOL BIOTEC EQ 2023. [DOI: 10.1080/13102818.2023.2176169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Affiliation(s)
- Chen Feng
- Jiangxi Provincial Key Laboratory of ex situ Plant Conservation and Utilization, Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, Jiangxi, PR China
| | - Shuaiyu Zou
- Jiangxi Provincial Key Laboratory of ex situ Plant Conservation and Utilization, Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, Jiangxi, PR China
| | - Jie Zhang
- Jiangxi Provincial Key Laboratory of ex situ Plant Conservation and Utilization, Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, Jiangxi, PR China
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Verslues PE, Bailey-Serres J, Brodersen C, Buckley TN, Conti L, Christmann A, Dinneny JR, Grill E, Hayes S, Heckman RW, Hsu PK, Juenger TE, Mas P, Munnik T, Nelissen H, Sack L, Schroeder JI, Testerink C, Tyerman SD, Umezawa T, Wigge PA. Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress. THE PLANT CELL 2023; 35:67-108. [PMID: 36018271 PMCID: PMC9806664 DOI: 10.1093/plcell/koac263] [Citation(s) in RCA: 40] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 08/21/2022] [Indexed: 05/08/2023]
Abstract
We present unresolved questions in plant abiotic stress biology as posed by 15 research groups with expertise spanning eco-physiology to cell and molecular biology. Common themes of these questions include the need to better understand how plants detect water availability, temperature, salinity, and rising carbon dioxide (CO2) levels; how environmental signals interface with endogenous signaling and development (e.g. circadian clock and flowering time); and how this integrated signaling controls downstream responses (e.g. stomatal regulation, proline metabolism, and growth versus defense balance). The plasma membrane comes up frequently as a site of key signaling and transport events (e.g. mechanosensing and lipid-derived signaling, aquaporins). Adaptation to water extremes and rising CO2 affects hydraulic architecture and transpiration, as well as root and shoot growth and morphology, in ways not fully understood. Environmental adaptation involves tradeoffs that limit ecological distribution and crop resilience in the face of changing and increasingly unpredictable environments. Exploration of plant diversity within and among species can help us know which of these tradeoffs represent fundamental limits and which ones can be circumvented by bringing new trait combinations together. Better defining what constitutes beneficial stress resistance in different contexts and making connections between genes and phenotypes, and between laboratory and field observations, are overarching challenges.
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Affiliation(s)
| | - Julia Bailey-Serres
- Department of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, California 92521, USA
| | - Craig Brodersen
- School of the Environment, Yale University, New Haven, Connecticut 06511, USA
| | - Thomas N Buckley
- Department of Plant Sciences, University of California, Davis, California 95616, USA
| | - Lucio Conti
- Department of Biosciences, University of Milan, Milan 20133, Italy
| | - Alexander Christmann
- School of Life Sciences, Technical University Munich, Freising-Weihenstephan 85354, Germany
| | - José R Dinneny
- Department of Biology, Stanford University, Stanford, California 94305, USA
| | - Erwin Grill
- School of Life Sciences, Technical University Munich, Freising-Weihenstephan 85354, Germany
| | - Scott Hayes
- Laboratory of Plant Physiology, Plant Sciences Group, Wageningen University and Research, Wageningen 6708 PB, The Netherlands
| | - Robert W Heckman
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
| | - Po-Kai Hsu
- Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, California 92093, USA
| | - Thomas E Juenger
- Department of Integrative Biology, University of Texas at Austin, Austin, Texas 78712, USA
| | - Paloma Mas
- Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Barcelona 08193, Spain
- Consejo Superior de Investigaciones Científicas (CSIC), Barcelona 08028, Spain
| | - Teun Munnik
- Department of Plant Cell Biology, Green Life Sciences Cluster, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam NL-1098XH, The Netherlands
| | - Hilde Nelissen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium
- VIB Center for Plant Systems Biology, Ghent 9052, Belgium
| | - Lawren Sack
- Department of Ecology and Evolutionary Biology, Institute of the Environment and Sustainability, University of California, Los Angeles, California 90095, USA
| | - Julian I Schroeder
- Department of Cell and Developmental Biology, School of Biological Sciences, University of California San Diego, La Jolla, California 92093, USA
| | - Christa Testerink
- Laboratory of Plant Physiology, Plant Sciences Group, Wageningen University and Research, Wageningen 6708 PB, The Netherlands
| | - Stephen D Tyerman
- ARC Center Excellence, Plant Energy Biology, School of Agriculture Food and Wine, University of Adelaide, Adelaide, South Australia 5064, Australia
| | - Taishi Umezawa
- Faculty of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 6708 PB, Japan
| | - Philip A Wigge
- Leibniz-Institut für Gemüse- und Zierpflanzenbau, Großbeeren 14979, Germany
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam 14476, Germany
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Lasky JR, Josephs EB, Morris GP. Genotype-environment associations to reveal the molecular basis of environmental adaptation. THE PLANT CELL 2023; 35:125-138. [PMID: 36005926 PMCID: PMC9806588 DOI: 10.1093/plcell/koac267] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 08/23/2022] [Indexed: 06/14/2023]
Abstract
A fundamental goal in plant biology is to identify and understand the variation underlying plants' adaptation to their environment. Climate change has given new urgency to this goal, as society aims to accelerate adaptation of ecologically important plant species, endangered plant species, and crops to hotter, less predictable climates. In the pre-genomic era, identifying adaptive alleles was painstaking work, leveraging genetics, molecular biology, physiology, and ecology. Now, the rise of genomics and new computational approaches may facilitate this research. Genotype-environment associations (GEAs) use statistical associations between allele frequency and environment of origin to test the hypothesis that allelic variation at a given gene is adapted to local environments. Researchers may scan the genome for GEAs to generate hypotheses on adaptive genetic variants (environmental genome-wide association studies). Despite the rapid adoption of these methods, many important questions remain about the interpretation of GEA findings, which arise from fundamental unanswered questions on the genetic architecture of adaptation and limitations inherent to association-based analyses. We outline strategies to ground GEAs in the underlying hypotheses of genetic architecture and better test GEA-generated hypotheses using genetics and ecophysiology. We provide recommendations for new users who seek to learn about the molecular basis of adaptation. When combined with a rigorous hypothesis testing framework, GEAs may facilitate our understanding of the molecular basis of climate adaptation for plant improvement.
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Affiliation(s)
- Jesse R Lasky
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Emily B Josephs
- Department of Plant Biology; Ecology, Evolution, and Behavior Program, Michigan State University, East Lansing, Michigan 48824, USA
| | - Geoffrey P Morris
- Department of Soil and Crop Sciences; Cell and Molecular Biology Program, Colorado State University, Fort Collins, Colorado 80526, USA
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13
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Zhou H, Zeng RF, Liu TJ, Ai XY, Ren MK, Zhou JJ, Hu CG, Zhang JZ. Drought and low temperature-induced NF-YA1 activates FT expression to promote citrus flowering. PLANT, CELL & ENVIRONMENT 2022; 45:3505-3522. [PMID: 36117312 DOI: 10.1111/pce.14442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 06/16/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
Abstract
Flower induction in adult citrus is mainly regulated by drought and low temperatures. However, the mechanism of FLOWERING LOCUS T regulation of citrus flowering (CiFT) under two flower-inductive stimuli remains largely unclear. In this study, a citrus transcription factor, nuclear factor YA (CiNF-YA1), was found to specifically bind to the CiFT promoter by forming a complex with CiNF-YB2 and CiNF-YC2 to activate CiFT expression. CiNF-YA1 was induced in juvenile citrus by low temperature and drought treatments. Overexpression of CiNF-YA1 increased drought susceptibility in transgenic citrus, whereas suppression of CiNF-YA1 enhanced drought tolerance in silenced citrus plants. Furthermore, a GOLDEN2 - LIKE protein (CiFE) that interacts with CiFT protein was also isolated. Further experimental evidence showed that CiFE binds to the citrus LEAFY (CiLFY) promoter and activates its expression. In addition, the expressions of CiNF-YA1 and CiFE showed a seasonal increase during the floral induction period and were induced by artificial drought and low-temperature treatments at which floral induction occurred. These results indicate that CiNF-YA1 may activate CiFT expression in response to drought and low temperatures by binding to the CiFT promoter. CiFT then forms a complex with CiFE to activate CiLFY, thereby promoting the flowering of adult citrus.
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Affiliation(s)
- Huan Zhou
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Ren-Fang Zeng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Tian-Jia Liu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Xiao-Yan Ai
- Institute of Pomology and Tea, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Meng-Ke Ren
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jing-Jing Zhou
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Chun-Gen Hu
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
| | - Jin-Zhi Zhang
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, China
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14
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MacTavish R, Anderson JT. Water and nutrient availability exert selection on reproductive phenology. AMERICAN JOURNAL OF BOTANY 2022; 109:1702-1716. [PMID: 36031862 DOI: 10.1002/ajb2.16057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 07/22/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
PREMISE Global change has changed resource availability to plants, which could shift the adaptive landscape. We hypothesize that novel water and nutrient availability combinations alter patterns of natural selection on reproductive phenology in Boechera stricta (Brassicaceae) and influence the evolution of local adaptation. METHODS We conducted a multifactorial greenhouse study using 35 accessions of B. stricta sourced from a broad elevational gradient in the Rocky Mountains. We exposed full siblings to three soil water and two nutrient availability treatment levels, reflecting current and projected future conditions. In addition, we quantified fitness (seed count) and four phenological traits: the timing of first flowering, the duration of flowering, and height and leaf number at flowering. RESULTS Selection favored early flowering and longer duration of flowering, and the genetic correlation between these traits accorded with the direction of selection. In most treatments, we found selection for increased height, but selection on leaf number depended on water availability, with selection favoring more leaves in well-watered conditions and fewer leaves under severe drought. Low-elevation genotypes had the greatest fitness under drought stress, consistent with local adaptation. CONCLUSIONS We found evidence of strong selection on these heritable traits. Furthermore, the direction and strength of selection on size at flowering depended on the variable measured (height vs. leaf number). Finally, selection often favored both early flowering and a longer duration of flowering. Selection on these two components of phenology can be difficult to disentangle due to tight genetic correlations.
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Affiliation(s)
- Rachel MacTavish
- Department of Genetics and Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
| | - Jill T Anderson
- Department of Genetics and Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
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15
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Johnson SE, Hamann E, Franks SJ. Rapid-cycling Brassica rapa evolves even earlier flowering under experimental drought. AMERICAN JOURNAL OF BOTANY 2022; 109:1683-1692. [PMID: 35587234 DOI: 10.1002/ajb2.16002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 04/14/2022] [Accepted: 04/14/2022] [Indexed: 06/15/2023]
Abstract
PREMISE Changes in climate can impose selection on populations and may lead to rapid evolution. One such climatic stress is drought, which plant populations may respond to with escape (rapid growth and early flowering) or avoidance (slow growth and efficient water-use). However, it is unclear if drought escape would be a viable strategy for populations that already flower early from prior selection. METHODS In an experimental evolution study, we subjected rapid-cycling Brassica rapa (RCBr), which was previously selected for early flowering, to four generations of experimental drought or watered conditions. We then grew ancestral and descendant populations concurrently under drought and watered conditions to assess evolution, plasticity, and adaptation. RESULTS The RCBr populations that evolved under drought had earlier flowering and lower water-use efficiency than the populations that evolved under watered conditions, indicating evolutionary divergence. The drought descendants also had a trend of earlier flowering compared to ancestors, indicating evolution. Evolution of earlier flowering under drought followed the direction of selection and increased fitness and was consistent with studies in natural and experimental populations of this species, suggesting adaptive evolution. CONCLUSIONS We found rapid adaptive evolution of drought escape in RCBr and little evidence for constraints on flowering time evolution, even though RCBr already flowers extremely early. Our results suggest that some populations may harbor sufficient genetic variation for evolution even after strong selection has occurred. Our study also illustrates the utility of combining artificial selection, experimental evolution, and the resurrection approach to study the evolution of functional traits.
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Affiliation(s)
- Stephen E Johnson
- Department of Biological Sciences, Fordham University, Bronx, NY, 10458, USA
| | - Elena Hamann
- Department of Biological Sciences, Fordham University, Bronx, NY, 10458, USA
| | - Steven J Franks
- Department of Biological Sciences, Fordham University, Bronx, NY, 10458, USA
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16
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Mazer SJ, Hunter DJ, Hove AA, Dudley LS. Context-dependent concordance between physiological divergence and phenotypic selection in sister taxa with contrasting phenology and mating systems. AMERICAN JOURNAL OF BOTANY 2022; 109:1757-1779. [PMID: 35652277 DOI: 10.1002/ajb2.16016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 05/08/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
PREMISE The study of phenotypic divergence of, and selection on, functional traits in closely related taxa provides the opportunity to detect the role of natural selection in driving diversification. If the strength or direction of selection in field populations differs between taxa in a pattern that is consistent with the phenotypic difference between them, then natural selection reinforces the divergence. Few studies have sought evidence for such concordance for physiological traits. METHODS Herbarium specimen records were used to detect phenological differences between sister taxa independent of the effects on flowering time of long-term variation in the climate across collection sites. In the field, physiological divergence in photosynthetic rate, transpiration rate, and instantaneous water-use efficiency were recorded during vegetative growth and flowering in 13 field populations of two taxon pairs of Clarkia, each comprising a self-pollinating and a outcrossing taxon. RESULTS Historically, each selfing taxon flowered earlier than its outcrossing sister taxon, independent of the effects of local long-term climatic conditions. Sister taxa differed in all focal traits, but the degree and (in one case) the direction of divergence depended on life stage. In general, self-pollinating taxa had higher gas exchange rates, consistent with their earlier maturation. In 6 of 18 comparisons, patterns of selection were concordant with the phenotypic divergence (or lack thereof) between sister taxa. CONCLUSIONS Patterns of selection on physiological traits measured in heterogeneous conditions do not reliably reflect divergence between sister taxa, underscoring the need for replicated studies of the direction of selection within and among taxa.
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Affiliation(s)
- Susan J Mazer
- Department of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA, 93106, USA
| | - David J Hunter
- Department of Mathematics and Computer Science, Westmont College, Santa Barbara, CA, 93108
| | - Alisa A Hove
- Biology Department, Warren Wilson College, P.O. Box 9000, Asheville, NC, 28815, USA
| | - Leah S Dudley
- Department of Biological and Environmental Sciences, East Central University, Ada, OK, 74820, USA
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17
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Rushworth CA, Wagner MR, Mitchell-Olds T, Anderson JT. The Boechera model system for evolutionary ecology. AMERICAN JOURNAL OF BOTANY 2022; 109:1939-1961. [PMID: 36371714 DOI: 10.1002/ajb2.16090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 08/27/2022] [Accepted: 08/30/2022] [Indexed: 06/16/2023]
Abstract
Model systems in biology expand the research capacity of individuals and the community. Closely related to Arabidopsis, the genus Boechera has emerged as an important ecological model owing to the ability to integrate across molecular, functional, and eco-evolutionary approaches. Boechera species are broadly distributed in relatively undisturbed habitats predominantly in western North America and provide one of the few experimental systems for identification of ecologically important genes through genome-wide association studies and investigations of selection with plants in their native habitats. The ecologically, evolutionarily, and agriculturally important trait of apomixis (asexual reproduction via seeds) is common in the genus, and field experiments suggest that abiotic and biotic environments shape the evolution of sex. To date, population genetic studies have focused on the widespread species B. stricta, detailing population divergence and demographic history. Molecular and ecological studies show that balancing selection maintains genetic variation in ~10% of the genome, and ecological trade-offs contribute to complex trait variation for herbivore resistance, flowering phenology, and drought tolerance. Microbiome analyses have shown that host genotypes influence leaf and root microbiome composition, and the soil microbiome influences flowering phenology and natural selection. Furthermore, Boechera offers numerous opportunities for investigating biological responses to global change. In B. stricta, climate change has induced a shift of >2 weeks in the timing of first flowering since the 1970s, altered patterns of natural selection, generated maladaptation in previously locally-adapted populations, and disrupted life history trade-offs. Here we review resources and results for this eco-evolutionary model system and discuss future research directions.
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Affiliation(s)
| | - Maggie R Wagner
- Department of Ecology and Evolutionary Biology, Kansas Biological Survey and Center for Ecological Research, University of Kansas, Lawrence, KS, 66045, USA
| | | | - Jill T Anderson
- Department of Genetics and Odum School of Ecology, University of Georgia, Athens, GA, 30602, USA
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18
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Estimation of Maize Yield and Flowering Time Using Multi-Temporal UAV-Based Hyperspectral Data. REMOTE SENSING 2022. [DOI: 10.3390/rs14133052] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Maize (Zea mays L.) is one of the most consumed grains in the world. Within the context of continuous climate change and the reduced availability of arable land, it is urgent to breed new maize varieties and screen for the desired traits, e.g., high yield and strong stress tolerance. Traditional phenotyping methods relying on manual assessment are time-consuming and prone to human errors. Recently, the application of uncrewed aerial vehicles (UAVs) has gained increasing attention in plant phenotyping due to their efficiency in data collection. Moreover, hyperspectral sensors integrated with UAVs can offer data streams with high spectral and spatial resolutions, which are valuable for estimating plant traits. In this study, we collected UAV hyperspectral imagery over a maize breeding field biweekly across the growing season, resulting in 11 data collections in total. Multiple machine learning models were developed to estimate the grain yield and flowering time of the maize breeding lines using the hyperspectral imagery. The performance of the machine learning models and the efficacy of different hyperspectral features were evaluated. The results showed that the models with the multi-temporal imagery outperformed those with imagery from single data collections, and the ridge regression using the full band reflectance achieved the best estimation accuracies, with the correlation coefficients (r) between the estimates and ground truth of 0.54 for grain yield, 0.91 for days to silking, and 0.92 for days to anthesis. In addition, we assessed the estimation performance with data acquired at different growth stages to identify the good periods for the UAV survey. The best estimation results were achieved using the data collected around the tasseling stage (VT) for the grain yield estimation and around the reproductive stages (R1 or R4) for the flowering time estimation. Our results showed that the robust phenotyping framework proposed in this study has great potential to help breeders efficiently estimate key agronomic traits at early growth stages.
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19
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Blanco‐Sánchez M, Ramos‐Muñoz M, Pías B, Ramírez‐Valiente JA, Díaz‐Guerra L, Escudero A, Matesanz S. Natural selection favours drought escape and an acquisitive resource‐use strategy in semiarid Mediterranean shrubs. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14121] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Mario Blanco‐Sánchez
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos. C/ Tulipán s/n, 28933 Móstoles Spain
| | - Marina Ramos‐Muñoz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos. C/ Tulipán s/n, 28933 Móstoles Spain
| | - Beatriz Pías
- Departamento de Biodiversidad, Ecología y Evolución. Universidad Complutense de Madrid. C/José Antonio Nováis 2, 28040 Madrid Spain
| | - José Alberto Ramírez‐Valiente
- Department of Forest Ecology & Genetics, Forest Research Center (INIA, CSIC), Ctra. de La Coruña km 7.5, 28040 Madrid Spain
- Centre for Ecological Research and Forestry Applications, CREAF, Edifici C Campus de Bellaterra, 08193 Barcelona Spain
| | - Laura Díaz‐Guerra
- Department of Environmental Sciences, Faculty of Sciences University of Girona. Campus Montilivi C/ Maria Aurèlia Capmany i Farnés 69 Girona Spain
- BETA Technological Center University of Vic – Central University of Catalonia. Futurlab ‐ Can Baumann Vic Barcelona Spain
| | - Adrián Escudero
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos. C/ Tulipán s/n, 28933 Móstoles Spain
| | - Silvia Matesanz
- Área de Biodiversidad y Conservación, Universidad Rey Juan Carlos. C/ Tulipán s/n, 28933 Móstoles Spain
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20
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Yi F, Huo M, Li J, Yu J. Time-series transcriptomics reveals a drought-responsive temporal network and crosstalk between drought stress and the circadian clock in foxtail millet. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 110:1213-1228. [PMID: 35262997 DOI: 10.1111/tpj.15725] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 02/23/2022] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
Drought stress is a serious factor affecting crop growth and production worldwide. The circadian clock has been identified as key to improving regional adaptability of plants. However, our understanding of the contribution of the circadian clock to drought response and the impacts of drought stress on the circadian clock in plants is still limited. To explore the interactions between the circadian clock and drought stress, foxtail millet seedlings were treated with simulated drought (20% polyethylene glycol-6000) treatment starting at the day (DD) onset zeitgeber time 0 (ZT0, lights on) and at the night (DN) onset zeitgeber time 16 (ZT16, lights off). A high temporal-resolution transcriptomic investigation was performed using DD and DN samples collected at intervals of 2 or 4 h within a 24-h drought-treatment period. Overall, we identified 13 294 drought-responsive genes (DRGs). Among these DRGs, 7931 were common between DD and DN samples, 2638 were specific to DD, and 2725 were specific to DN. Additionally, we identified 1257 circadian genes, of which 67% were DRGs. Interestingly, with drought treatment starting at the day for 8, 12 or 16 h, the circadian phase shifted to 12 h. We also found that the circadian clock led to different day and night drought-responsive pathways. The identification of DRG_Clock (DRG and circadian clock) and DRG_NonClock (DRG and not circadian clock) genes provides a reference for selecting candidate drought resistance genes. Our work reveals the temporal drought-response process and crosstalk between drought stress and the circadian clock in foxtail millet.
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Affiliation(s)
- Fei Yi
- State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
- State Key Laboratory of Plant Physiology and Biochemistry, Engineering Research Center of Plant Growth Regulator, Ministry of Education, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Mingyue Huo
- State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
| | - Jianrui Li
- State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
- State Key Laboratory of Plant Physiology and Biochemistry, National Maize Improvement Center, Department of Plant Genetics and Breeding, China Agricultural University, Beijing, 100193, China
| | - Jingjuan Yu
- State Key Laboratory of Agrobiotechnology, College of Biological Sciences, China Agricultural University, Beijing, 100193, China
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21
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Carvalho C, Davis R, Connallon T, Gleadow RM, Moore JL, Uesugi A. Multivariate selection mediated by aridity predicts divergence of drought-resistant traits along natural aridity gradients of an invasive weed. THE NEW PHYTOLOGIST 2022; 234:1088-1100. [PMID: 35118675 PMCID: PMC9311224 DOI: 10.1111/nph.18018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
Geographical variation in the environment underpins selection for local adaptation and evolutionary divergence among populations. Because many environmental conditions vary across species' ranges, identifying the specific environmental variables underlying local adaptation is profoundly challenging. We tested whether natural selection mediated by aridity predicts clinal divergence among invasive populations of capeweed (Arctotheca calendula) that established and spread across southern Australia during the last two centuries. Using common garden experiments with two environmental treatments (wet and dry) that mimic aridity conditions across capeweed's invasive range, we estimated clinal divergence and effects of aridity on fitness and multivariate phenotypic selection in populations sampled along aridity gradients in Australia. We show that: (1) capeweed populations have relatively high fitness in aridity environments similar to their sampling locations; (2) the magnitude and direction of selection strongly differs between wet and dry treatments, with drought stress increasing the strength of selection; and (3) differences in directional selection between wet and dry treatments predict patterns of clinal divergence across the aridity gradient, particularly for traits affecting biomass, flowering phenology and putative antioxidant expression. Our results suggest that aridity-mediated selection contributes to trait diversification among invasive capeweed populations, possibly facilitating the expansion of capeweed across southern Australia.
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Affiliation(s)
- Carter Carvalho
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
| | - Rochelle Davis
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
| | - Tim Connallon
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
| | - Roslyn M. Gleadow
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
| | - Joslin L. Moore
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
| | - Akane Uesugi
- School of Biological SciencesMonash UniversityClaytonVic.3800Australia
- Biosciences and Food Technology DivisionSchool of ScienceRMIT UniversityBundooraVic.3083Australia
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22
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Mishra M, Rathore RS, Joshi R, Pareek A, Singla-Pareek SL. DTH8 overexpression induces early flowering, boosts yield, and improves stress recovery in rice cv IR64. PHYSIOLOGIA PLANTARUM 2022; 174:e13691. [PMID: 35575899 DOI: 10.1111/ppl.13691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 04/17/2022] [Accepted: 04/27/2022] [Indexed: 06/15/2023]
Abstract
Rice yield and heading date are the two discrete traits controlled by quantitative trait loci (QTLs). Both traits are influenced by the genetic make-up of the plant as well as the environmental factors where it thrives. Drought and salinity adversely affect crop productivity in many parts of the world. Tolerance to these stresses is multigenic and complex in nature. In this study, we have characterized a QTL, DTH8 (days to heading) from Oryza sativa L. cv IR64 that encodes a putative HAP3/NF-YB/CBF subunit of CCAAT-box binding protein (HAP complex). We demonstrate DTH8 to be positively influencing the yield, heading date, and stress tolerance in IR64. DTH8 up-regulates the transcription of RFT1, Hd3a, GHD7, MOC1, and RCN1 in IR64 at the pre-flowering stage and plays a role in early flowering, increased number of tillers, enhanced panicle branching, and improved tolerance towards drought and salinity stress at the reproductive stage. The presence of DTH8 binding elements (CCAAT) in the promoter regions of all of these genes, predicted by in silico analysis of the promoter region, indicates the regulation of their expression by DTH8. In addition, DTH8 overexpressing transgenic lines showed favorable physiological parameters causing less yield penalty under stress than the WT plants. Taken together, DTH8 is a positive regulator of the network of genes related to early flowering/heading, higher yield, as well as salinity and drought stress tolerance, thus, enabling the crops to adapt to a wide range of climatic conditions.
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Affiliation(s)
- Manjari Mishra
- Plant Stress Biology, International Center for Genetic Engineering and Biotechnology, New Delhi, India
| | - Ray Singh Rathore
- Plant Stress Biology, International Center for Genetic Engineering and Biotechnology, New Delhi, India
| | - Rohit Joshi
- Plant Stress Biology, International Center for Genetic Engineering and Biotechnology, New Delhi, India
| | - Ashwani Pareek
- Stress Physiology and Molecular Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Sneh Lata Singla-Pareek
- Plant Stress Biology, International Center for Genetic Engineering and Biotechnology, New Delhi, India
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23
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Chong L, Xu R, Huang P, Guo P, Zhu M, Du H, Sun X, Ku L, Zhu JK, Zhu Y. The tomato OST1-VOZ1 module regulates drought-mediated flowering. THE PLANT CELL 2022; 34:2001-2018. [PMID: 35099557 PMCID: PMC9048945 DOI: 10.1093/plcell/koac026] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 01/25/2022] [Indexed: 05/08/2023]
Abstract
Flowering is a critical agricultural trait that substantially affects tomato fruit yield. Although drought stress influences flowering time, the molecular mechanism underlying drought-regulated flowering in tomato remains elusive. In this study, we demonstrated that loss of function of tomato OPEN STOMATA 1 (SlOST1), a protein kinase essential for abscisic acid (ABA) signaling and abiotic stress responses, lowers the tolerance of tomato plants to drought stress. slost1 mutants also exhibited a late flowering phenotype under both normal and drought stress conditions. We also established that SlOST1 directly interacts with and phosphorylates the NAC (NAM, ATAF and CUC)-type transcription factor VASCULAR PLANT ONE-ZINC FINGER 1 (SlVOZ1), at residue serine 67, thereby enhancing its stability and nuclear translocation in an ABA-dependent manner. Moreover, we uncovered several SlVOZ1 binding motifs from DNA affinity purification sequencing analyses and revealed that SlVOZ1 can directly bind to the promoter of the major flowering-integrator gene SINGLE FLOWER TRUSS to promote tomato flowering transition in response to drought. Collectively, our data uncover the essential role of the SlOST1-SlVOZ1 module in regulating flowering in response to drought stress in tomato and offer insights into a novel strategy to balance drought stress response and flowering.
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Affiliation(s)
| | | | | | - Pengcheng Guo
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475001, China
- Sanya Institute of Henan University, Sanya, 572025, China
| | - Mingku Zhu
- Institute of Integrative Plant Biology, School of Life Sciences, Jiangsu Normal University, Xuzhou 221116, China
| | - Hai Du
- College of Agronomy and Biotechnology, Chongqing Engineering Research Center for Rapeseed, Southwest University, Chongqing 400716, China
| | - Xiaoli Sun
- Crop Stress Molecular Biology Laboratory, Heilongjiang Bayi Agricultural University, Daqing 163319, China
| | - Lixia Ku
- College of Agronomy, Synergetic Innovation Center of Henan Grain Crops and National Key Laboratory of Wheat and Maize Crop Science, Henan Agricultural University, Zhengzhou 450046, China
| | - Jian-Kang Zhu
- Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, Indiana 47907, USA
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24
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López ME, Silva Santos I, Marquez Gutiérrez R, Jaramillo Mesa A, Cardon CH, Espíndola Lima JM, Almeida Lima A, Chalfun-Junior A. Crosstalk Between Ethylene and Abscisic Acid During Changes in Soil Water Content Reveals a New Role for 1-Aminocyclopropane-1- Carboxylate in Coffee Anthesis Regulation. FRONTIERS IN PLANT SCIENCE 2022; 13:824948. [PMID: 35463406 PMCID: PMC9019592 DOI: 10.3389/fpls.2022.824948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
Coffee (Coffea arabica L.) presents an asynchronous flowering regulated by an endogenous and environmental stimulus, and anthesis occurs once plants are rehydrated after a period of water deficit. We evaluated the evolution of Abscisic Acid (ABA), ethylene, 1-aminocyclopropane-1-carboxylate (ACC) content, ACC oxidase (ACO) activity, and expression analysis of the Lysine Histidine Transporter 1 (LHT1) transporter, in the roots, leaves, and flower buds from three coffee genotypes (C. arabica L. cv Oeiras, Acauã, and Semperflorens) cultivated under field conditions with two experiments. In a third field experiment, the effect of the exogenous supply of ACC in coffee anthesis was evaluated. We found an increased ACC level, low ACO activity, decreased level of ethylene, and a decreased level of ABA in all tissues from the three coffee genotypes in the re-watering period just before anthesis, and a high expression of the LHT1 in flower buds and leaves. The ethylene content and ACO activity decreased from rainy to dry period whereas the ABA content increased. A higher number of opened and G6 stage flower buds were observed in the treatment with exogenous ACC. The results showed that the interaction of ABA-ACO-ethylene and intercellular ACC transport among the leaves, buds, and roots in coffee favors an increased level of ACC that is most likely, involved as a modulator in coffee anthesis. This study provides evidence that ACC can play an important role independently of ethylene in the anthesis process in a perennial crop.
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Phenotypic differentiation and diversifying selection in populations of Eruca sativa along an aridity gradient. BMC Ecol Evol 2022; 22:40. [PMID: 35354367 PMCID: PMC8966261 DOI: 10.1186/s12862-022-01996-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 03/22/2022] [Indexed: 11/30/2022] Open
Abstract
Background The aridity gradient in the eastern Mediterranean offers an opportunity to investigate intra-specific genetic differentiation and local adaptation in plant populations. Here we used genetic (FST) and quantitative trait (PST) differentiation to assess local adaptation among three natural populations of Eruca sativa (Brassicaceae) distributed along a climatic range representing desert, semi-arid and Mediterranean habitats. Results Amplified fragment length polymorphism (AFLP) analysis revealed high genetic diversity in each population, but low genetic differentiation between populations and relatively high gene flow. Further phenotypic evaluation in a common garden experiment (conduced in a Mediterranean habitat) showed clear differences in phenological traits among populations (day of flowering and duration of the reproductive stage), shoot and root biomass, as well as fitness-related traits (total number of fruits and total seed weight). FST–PST comparison showed that PST values of the phenological traits, as well as below- and above-ground biomass and fitness-related traits, were higher than the FST values. Conclusions Overall, our results support the identification of genotypic and phenotypic differentiation among populations of E. sativa. Furthermore, the FST–PST comparison supports the hypothesis that these were subjected to past diversifying selection. Thus, the results clearly demonstrate adaptive divergence among populations along an aridity gradient, emphasize the ecological value of early flowering time in arid habitats, and contribute to our understanding of the possible impact of climate change on evolutionary processes in plant populations. Supplementary Information The online version contains supplementary material available at 10.1186/s12862-022-01996-w.
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Höfer RJ, Ayasse M, Kuppler J. Water Deficit, Nitrogen Availability, and Their Combination Differently Affect Floral Scent Emission in Three Brassicaceae Species. J Chem Ecol 2022; 48:882-899. [PMID: 36525146 PMCID: PMC9840598 DOI: 10.1007/s10886-022-01393-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 11/10/2022] [Accepted: 11/13/2022] [Indexed: 12/23/2022]
Abstract
Floral scent plays a central role in plant-pollinator interactions, as flower visitors can discriminate between scent differences to recognize and forage on rewarding flowers. Changes in scent compositions might therefore lead to recognition mismatches between host plants and flower visitors. An understanding of the phenotypic plasticity of floral scent, especially in crop species, is becoming important because of climate change, e.g., increasing drought periods, and other anthropogenic influences, e.g., nitrogen (N) deposition. We have investigated the effects of the combination of progressive water deficits (dry-down) and N supplementation on floral scent emission in three Brassicaceae species (cultivated vs. wild). Individuals were randomly assigned to one of four treatments: (1) well-watered without N supplementation; (2) well-watered with N supplementation; (3) dry-down without N supplementation; (4) dry-down with N supplementation. We collected scent on day 0, 2, 7, and 14 after the commencement of the watering treatment. All samples were analyzed using gas chromatography coupled with mass spectrometry. We found that the highly cultivated Brassica napus had the lowest overall emission rate; its scent composition was affected by the interaction of watering treatment and N supplementation. Scent bouquets of the cultivated Sinapis alba also changed under these treatments. Scent bouquets of the common weed Sinapis arvensis were affected by watering treatment, but not by time and N supplementation. Furthermore, the influence of treatments on the emission rate of single compounds was highly compound-specific. Nonetheless, our study revealed that especially terpenes were negatively affected by drought-stress.
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Affiliation(s)
- Rebecca J. Höfer
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Manfred Ayasse
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Jonas Kuppler
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
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Johnson SE, Hamann E, Franks SJ. Rapid, parallel evolution of field mustard (Brassica rapa) under experimental drought. Evolution 2021; 76:262-274. [PMID: 34878171 DOI: 10.1111/evo.14413] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 10/15/2021] [Accepted: 10/26/2021] [Indexed: 11/29/2022]
Abstract
Climate change is driving evolutionary and plastic responses in populations, but predicting these responses remains challenging. Studies that combine experimental evolution with ancestor-descendant comparisons allow assessment of the causes, parallelism, and adaptive nature of evolutionary responses, although such studies remain rare, particularly in a climate change context. Here, we created experimental populations of Brassica rapa derived from the same natural population and exposed these replicated populations to experimental drought or watered conditions for four generations. We then grew ancestors and descendants concurrently, following the resurrection approach. Experimental populations under drought showed rapid evolution of earlier flowering time and increased specific leaf area, consistent with a drought escape strategy and observations in natural populations. Evolutionary shifts followed the direction of selection and increased fitness under drought, indicative of adaptive evolution. Evolution to drought also occurred largely in parallel among replicate populations. Further, traits showed phenotypic plasticity to drought, but the direction and effect size of plasticity varied. Our results demonstrate parallel evolution to experimental drought, suggesting that evolution to strong, consistent selection may be predictable. Broadly, our study demonstrates the utility of combining experimental evolution with the resurrection approach to investigate responses to climate change.
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Affiliation(s)
- Stephen E Johnson
- Department of Biological Sciences and Louis Calder Center, Fordham University, Bronx, New York, 10458
| | - Elena Hamann
- Department of Biological Sciences and Louis Calder Center, Fordham University, Bronx, New York, 10458
| | - Steven J Franks
- Department of Biological Sciences and Louis Calder Center, Fordham University, Bronx, New York, 10458
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Deng Y, Bossdorf O, Scheepens JF. Transgenerational effects of temperature fluctuations in Arabidopsis thaliana. AOB PLANTS 2021; 13:plab064. [PMID: 34950444 PMCID: PMC8691168 DOI: 10.1093/aobpla/plab064] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Accepted: 10/09/2021] [Indexed: 06/14/2023]
Abstract
Plant stress responses can extend into the following generations, a phenomenon called transgenerational effects. Heat stress, in particular, is known to affect plant offspring, but we do not know to what extent these effects depend on the temporal patterns of the stress, and whether transgenerational responses are adaptive and genetically variable within species. To address these questions, we carried out a two-generation experiment with nine Arabidopsis thaliana genotypes. We subjected the plants to heat stress regimes that varied in timing and frequency, but not in mean temperature, and we then grew the offspring of these plants under controlled conditions as well as under renewed heat stress. The stress treatments significantly carried over to the offspring generation, with timing having stronger effects on plant phenotypes than stress frequency. However, there was no evidence that transgenerational effects were adaptive. The magnitudes of transgenerational effects differed substantially among genotypes, and for some traits the strength of plant responses was significantly associated with the climatic variability at the sites of origin. In summary, timing of heat stress not only directly affects plants, but it can also cause transgenerational effects on offspring phenotypes. Genetic variation in transgenerational effects, as well as correlations between transgenerational effects and climatic variability, indicates that transgenerational effects can evolve, and have probably already done so in the past.
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Affiliation(s)
- Ying Deng
- Institute of Evolution and Ecology, University of Tübingen, Tübingen 72076, Germany
- Natural History Research Center, Shanghai Natural History Museum, Shanghai 200041, China
| | - Oliver Bossdorf
- Institute of Evolution and Ecology, University of Tübingen, Tübingen 72076, Germany
| | - J F Scheepens
- Institute of Evolution and Ecology, University of Tübingen, Tübingen 72076, Germany
- Faculty of Biological Sciences, Goethe University Frankfurt, Frankfurt am Main 60438, Germany
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Sinha R, Fritschi FB, Zandalinas SI, Mittler R. The impact of stress combination on reproductive processes in crops. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 311:111007. [PMID: 34482910 DOI: 10.1016/j.plantsci.2021.111007] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 07/19/2021] [Accepted: 07/22/2021] [Indexed: 06/13/2023]
Abstract
Historically, extended droughts combined with heat waves caused severe reductions in crop yields estimated at billions of dollars annually. Because global warming and climate change are driving an increase in the frequency and intensity of combined water-deficit and heat stress episodes, understanding how these episodes impact yield is critical for our efforts to develop climate change-resilient crops. Recent studies demonstrated that a combination of water-deficit and heat stress exacerbates the impacts of water-deficit or heat stress on reproductive processes of different cereals and legumes, directly impacting grain production. These studies identified several different mechanisms potentially underlying the effects of stress combination on anthers, pollen, and stigma development and function, as well as fertilization. Here we review some of these findings focusing on unbalanced reactive oxygen accumulation, altered sugar concentrations, and conflicting functions of different hormones, as contributing to the reduction in yield during a combination of water-deficit and heat stress. Future studies focused on the effects of water-deficit and heat stress combination on reproduction of different crops are likely to unravel additional mechanisms, as well as reveal novel ways to develop stress combination-resilient crops. These could mitigate some of the potentially devastating impacts of this stress combination on agriculture.
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Affiliation(s)
- Ranjita Sinha
- Division of Plant Sciences, College of Agriculture Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA
| | - Felix B Fritschi
- Division of Plant Sciences, College of Agriculture Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA
| | - Sara I Zandalinas
- Division of Plant Sciences, College of Agriculture Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA
| | - Ron Mittler
- Division of Plant Sciences, College of Agriculture Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA; Department of Surgery, University of Missouri School of Medicine, Christopher S. Bond Life Sciences Center, University of Missouri, 1201 Rollins Street, Columbia, MO, 65201, USA.
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Blum MJ, Saunders CJ, McLachlan JS, Summers J, Craft C, Herrick JD. A century-long record of plant evolution reconstructed from a coastal marsh seed bank. Evol Lett 2021; 5:422-431. [PMID: 34367666 PMCID: PMC8327947 DOI: 10.1002/evl3.242] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 04/30/2021] [Accepted: 05/20/2021] [Indexed: 11/12/2022] Open
Abstract
Evidence is mounting that climate-driven shifts in environmental conditions can elicit organismal evolution, yet there are sparingly few long-term records that document the tempo and progression of responses, particularly for plants capable of transforming ecosystems. In this study, we "resurrected" cohorts of a foundational coastal marsh sedge (Schoenoplectus americanus) from a time-stratified seed bank to reconstruct a century-long record of heritable variation in response to salinity exposure. Common-garden experiments revealed that S. americanus exhibits heritable variation in phenotypic traits and biomass-based measures of salinity tolerance. We found that responses to salinity exposure differed among the revived cohorts, with plants from the early 20th century exhibiting greater salinity tolerance than those from the mid to late 20th century. Fluctuations in salinity tolerance could reflect stochastic variation but a congruent record of genotypic variation points to the alternative possibility that the loss and gain in functionality are driven by selection, with comparisons to historical rainfall and paleosalinity records suggesting that selective pressures vary according to shifting estuarine conditions. Because salinity tolerance in S. americanus is tightly coupled to primary productivity and other vital ecosystem attributes, these findings indicate that organismal evolution merits further consideration as a factor shaping coastal marsh responses to climate change.
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Affiliation(s)
- Michael J. Blum
- Department of Ecology & Evolutionary BiologyUniversity of TennesseeKnoxvilleTennessee37996
| | - Colin J. Saunders
- Southeast Environmental Research CenterFlorida International UniversityMiamiFlorida33199
| | - Jason S. McLachlan
- Department of Biological SciencesUniversity of Notre DameSouth BendIndiana46556
| | - Jennifer Summers
- Department of Ecology & Evolutionary BiologyUniversity of TennesseeKnoxvilleTennessee37996
| | - Christopher Craft
- School of Public and Environmental AffairsIndiana UniversityBloomingtonIndiana47405
| | - Jeffrey D. Herrick
- U.S Environmental Protection AgencyOffice of Research and DevelopmentResearch Triangle ParkNorth Carolina27711
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Pazzaglia J, Reusch TBH, Terlizzi A, Marín‐Guirao L, Procaccini G. Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival. Evol Appl 2021; 14:1181-1201. [PMID: 34025759 PMCID: PMC8127715 DOI: 10.1111/eva.13212] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 02/03/2021] [Accepted: 02/21/2021] [Indexed: 12/30/2022] Open
Abstract
Coastal oceans are particularly affected by rapid and extreme environmental changes with dramatic consequences for the entire ecosystem. Seagrasses are key ecosystem engineering or foundation species supporting diverse and productive ecosystems along the coastline that are particularly susceptible to fast environmental changes. In this context, the analysis of phenotypic plasticity could reveal important insights into seagrasses persistence, as it represents an individual property that allows species' phenotypes to accommodate and react to fast environmental changes and stress. Many studies have provided different definitions of plasticity and related processes (acclimation and adaptation) resulting in a variety of associated terminology. Here, we review different ways to define phenotypic plasticity with particular reference to seagrass responses to single and multiple stressors. We relate plasticity to the shape of reaction norms, resulting from genotype by environment interactions, and examine its role in the presence of environmental shifts. The potential role of genetic and epigenetic changes in underlying seagrasses plasticity in face of environmental changes is also discussed. Different approaches aimed to assess local acclimation and adaptation in seagrasses are explored, explaining strengths and weaknesses based on the main results obtained from the most recent literature. We conclude that the implemented experimental approaches, whether performed with controlled or field experiments, provide new insights to explore the basis of plasticity in seagrasses. However, an improvement of molecular analysis and the application of multi-factorial experiments are required to better explore genetic and epigenetic adjustments to rapid environmental shifts. These considerations revealed the potential for selecting the best phenotypes to promote assisted evolution with fundamental implications on restoration and preservation efforts.
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Affiliation(s)
- Jessica Pazzaglia
- Department of Integrative Marine EcologyStazione Zoologica Anton DohrnNaplesItaly
- Department of Life SciencesUniversity of TriesteTriesteItaly
| | - Thorsten B. H. Reusch
- Marine Evolutionary EcologyGEOMAR Helmholtz Centre for Ocean Research KielKielGermany
| | - Antonio Terlizzi
- Department of Life SciencesUniversity of TriesteTriesteItaly
- Department of Biology and Evolution of Marine OrganismsStazione Zoologica Anton DohrnNaplesItaly
| | - Lázaro Marín‐Guirao
- Department of Integrative Marine EcologyStazione Zoologica Anton DohrnNaplesItaly
- Seagrass Ecology GroupOceanographic Center of MurciaSpanish Institute of OceanographyMurciaSpain
| | - Gabriele Procaccini
- Department of Integrative Marine EcologyStazione Zoologica Anton DohrnNaplesItaly
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32
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O'Hara NB, Franks SJ, Kane NC, Tittes S, Rest JS. Evolution of pathogen response genes associated with increased disease susceptibility during adaptation to an extreme drought in a Brassica rapa plant population. BMC Ecol Evol 2021; 21:61. [PMID: 33882815 PMCID: PMC8060997 DOI: 10.1186/s12862-021-01789-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 04/08/2021] [Indexed: 11/27/2022] Open
Abstract
Background Pathogens are key components in natural and agricultural plant systems. There is evidence of evolutionary changes in disease susceptibility as a consequence of climate change, but we know little about the underlying genetic basis of this evolution. To address this, we took advantage of a historical seed collection of a Brassica rapa population, which we previously demonstrated evolved an increase in disease susceptibility to a necrotrophic fungal pathogen following a drought. Results Previously, we combined a resurrection experiment with genome-wide sequencing of 124 pooled ancestral and descendant plants. Here, using these previously generated sequence data (Franks et al. in Mol Ecol 25(15):3622–3631, 2016), we show that well-characterized necrotrophic fungal pathogen response (NFPR) genes have evolved, as indicated by changes in allele frequency, between ancestors and descendants, with several of them identified as extreme FST outliers. The jasmonic acid (JA) signaling pathway in particular seems to underlie the evolution of disease susceptibility, in addition to its well characterized role in plastic disease response. We identify a list of 260 genes that are both NFPR genes and are differentially expressed in response to drought, based on publicly available data. We present evidence that five of these genes evolved between ancestors and descendants, suggesting that the drought acted as the evolutionary driver, and that the accompanying increase in disease susceptibility may have been a consequence of genetic pleiotropy. Conclusions Our study provides evidence that for this population, standing variation in NFPR genes is affected by natural selection related to climate change. Our results reveal potentially important candidates that may underlie trait evolution in both crops and natural systems. Additionally, this trade-off between adaptation to biotic and abiotic stresses is an example of how climate change can have diverse and unexpected consequences. Supplementary Information The online version contains supplementary material available at 10.1186/s12862-021-01789-7.
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Affiliation(s)
- Niamh B O'Hara
- Jacobs Technion-Cornell Institute, Cornell Tech, New York, NY, 10011, USA. .,Department of Biological Sciences, Fordham University, Bronx, NY, 10458, USA. .,Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, 11794, USA.
| | - Steven J Franks
- Department of Biological Sciences, Fordham University, Bronx, NY, 10458, USA
| | - Nolan C Kane
- Department of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, 80309, USA
| | - Silas Tittes
- Department of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, 80309, USA
| | - Joshua S Rest
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, 11794, USA
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Lv A, Su L, Wen W, Fan N, Zhou P, An Y. Analysis of the Function of the Alfalfa Mslea-D34 Gene in Abiotic Stress Responses and Flowering Time. PLANT & CELL PHYSIOLOGY 2021; 62:28-42. [PMID: 32976554 DOI: 10.1093/pcp/pcaa121] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2020] [Accepted: 09/10/2020] [Indexed: 05/14/2023]
Abstract
A novel late embryogenesis abundant (LEA) gene, MsLEA-D34, was cloned from alfalfa (Medicago sativa L.). Its function and gene regulatory pathways were studied via overexpression (OE) and RNA interference (RNAi) of the gene in Arabidopsis and in hairy roots of alfalfa, as well as via analyzing key genes related to MsLEA-D34 during developmental phases in alfalfa. The results showed that MsLEA-D34 was a typical intrinsically disordered protein with a high capability for protein protection. Overexpression of MsLEA-D34 increased plant tolerance to osmotic and salt stresses, and caused Arabidopsis early flowering under drought and well-watered conditions. Overexpressing MsLEA-D34 induced up-regulation of FLOWERING LOCUS T (FT) and GIGANTEA (GI) at the flowering phase of Arabidopsis and hairy roots of alfalfa, but only FT was down-regulated in MsLEA-D34-RNAi lines. A positive effect of MsLEA-D34 on FT accumulation was demonstrated in alfalfa hairy roots. An ABA-responsive element (ABRE)-binding transcription factor (MsABF2), a novel transcription factor cloned from alfalfa, directly bound to the RY element in the MsLEA-D34 promoter and activated MsLEA-D34 expression. The above results indicate that MsLEA-D34 can regulate abiotic stress response in plants and influence flowering time of Arabidopsis.
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Affiliation(s)
- Aimin Lv
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Liantai Su
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Wuwu Wen
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Nana Fan
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Peng Zhou
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Yuan An
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
- Key Laboratory of Urban Agriculture, Ministry of Agriculture, Shanghai 201101, China
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Welles SR, Funk JL. Patterns of intraspecific trait variation along an aridity gradient suggest both drought escape and drought tolerance strategies in an invasive herb. ANNALS OF BOTANY 2021; 127:461-471. [PMID: 32949134 PMCID: PMC7988521 DOI: 10.1093/aob/mcaa173] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 09/16/2020] [Indexed: 05/22/2023]
Abstract
BACKGROUND AND AIMS In water-limited landscapes, some plants build structures that enable them to survive with minimal water (drought resistance). Instead of making structures that allow survival through times of water limitation, annual plants may invoke a drought escape strategy where they complete growth and reproduction when water is available. Drought escape and resistance each require a unique combination of traits and therefore plants are likely to have a suite of trait values that are consistent with a single drought response strategy. In environments where conditions are variable, plants may additionally evolve phenotypically plastic trait responses to water availability. Invasive annual species commonly occur in arid and semi-arid environments and many will be subject to reduced water availability associated with climate change. Assessing intraspecific trait variation across environmental gradients is a valuable tool for understanding how invasive plants establish and persist in arid environments. METHODS In this study, we used a common garden experiment with two levels of water availability to determine how traits related to carbon assimilation, water use, biomass allocation and flowering phenology vary in California wild radish populations across an aridity gradient. KEY RESULTS We found that populations from arid environments have rapid flowering and increased allocation to root biomass, traits associated with both drought escape and tolerance. Early flowering was associated with higher leaf nitrogen concentration and lower leaf mass per area, traits associated with high resource acquisition. While trait values varied across low- and high-water treatments, these shifts were consistent across populations, indicating no differential plasticity across the aridity gradient. CONCLUSIONS While previous studies have suggested that drought escape and drought resistance are mutually exclusive drought response strategies, our findings suggest that invasive annuals may employ both strategies to succeed in novel semi-arid environments. As many regions are expected to become more arid in the future, investigations of intraspecific trait variation within low water environments help to inform our understanding of potential evolutionary responses to increased aridity in invasive species.
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Affiliation(s)
- Shana R Welles
- Schmid College of Science and Technology, Chapman University, Orange, CA, USA
| | - Jennifer L Funk
- Schmid College of Science and Technology, Chapman University, Orange, CA, USA
- Department of Plant Sciences, University of California, Davis, CA, USA
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35
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Anstett DN, Branch HA, Angert AL. Regional differences in rapid evolution during severe drought. Evol Lett 2021; 5:130-142. [PMID: 33868709 PMCID: PMC8045920 DOI: 10.1002/evl3.218] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2020] [Revised: 11/06/2020] [Accepted: 01/15/2021] [Indexed: 11/09/2022] Open
Abstract
Climate change is increasing drought intensity, threatening biodiversity. Rapid evolution of drought adaptations might be required for population persistence, particularly in rear-edge populations that may already be closer to physiological limits. Resurrection studies are a useful tool to assess adaptation to climate change, yet these studies rarely encompass the geographic range of a species. Here, we sampled 11 populations of scarlet monkeyflower (Mimulus cardinalis), collecting seeds across the plants' northern, central, and southern range to track trait evolution from the lowest to the greatest moisture anomaly over a 7-year period. We grew families generated from these populations across well-watered and terminal drought treatments in a greenhouse and quantified five traits associated with dehydration escape and avoidance. When considering pre-drought to peak-drought phenotypes, we find that later date of flowering evolved across the range of M. cardinalis, suggesting a shift away from dehydration escape. Instead, traits consistent with dehydration avoidance evolved, with smaller and/or thicker leaves evolving in central and southern regions. The southern region also saw a loss of plasticity in these leaf traits by the peak of the drought, whereas flowering time remained plastic across all regions. This observed shift in traits from escape to avoidance occurred only in certain regions, revealing the importance of geographic context when examining adaptations to climate change.
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Affiliation(s)
- Daniel N Anstett
- Biodiversity Research Centre and Department of Botany University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
| | - Haley A Branch
- Biodiversity Research Centre and Department of Botany University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
| | - Amy L Angert
- Biodiversity Research Centre and Department of Botany University of British Columbia Vancouver British Columbia V6T 1Z4 Canada.,Department of Zoology University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
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Citron Watermelon Potential to Improve Crop Diversification and Reduce Negative Impacts of Climate Change. SUSTAINABILITY 2021. [DOI: 10.3390/su13042269] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Citron watermelon (Citrullus lanatus var. citroides (L.H. Bailey) Mansf. ex Greb.) is an underexploited and under-researched crop species with the potential to contribute to crop diversification in Sub-Saharan Africa. The species is cultivated in the drier parts of Southern Africa, mainly by smallholder farmers who maintain a wide range of landrace varieties. Understanding the molecular and morpho-physiological basis for drought adaptation in citron watermelon under these dry environments can aid in the identification of suitable traits for drought-tolerance breeding and improve food system resilience among smallholder farmers, thus adding to crop diversification. This paper reviews the literature on drought adaptation of Citrullus lanatus spp. (C3 xerophytes), using the systematic review approach. The review discusses the potential role of citron watermelon in adding to crop diversification, alternative food uses, and potential by-products that can be processed from the crop, and it analyzes the role of Sub-Saharan African farmers play as key actors in conserving citron watermelon germplasm and biodiversity. Finally, the review provides a summary of significant findings and identifies critical knowledge gaps for further research.
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Kaur S, Atri C, Akhatar J, Mittal M, Kaur R, Banga SS. Genetics of days to flowering, maturity and plant height in natural and derived forms of Brassica rapa L. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:473-487. [PMID: 33084931 DOI: 10.1007/s00122-020-03707-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 10/10/2020] [Indexed: 06/11/2023]
Abstract
Genome wide association studies enabled prediction of many candidate genes for flowering, maturity and plant height under differing day-length conditions. Some genes were envisaged only from derived B. rapa. Flowering and plant height are the key life history traits. These are crucial for adaptation and productivity. Current investigations aimed to examine genotypic differences governing days to flowering, maturity and plant height under contrasting day-length conditions; and identify genomic regions governing the observed phenotypic variations. An association panel comprising 195 inbred lines, representing natural (NR) and derived (DR) forms of Brassica rapa (AA; 2n = 20), was evaluated at two sowing dates and two locations, representing different day-length regimes. Derived B. rapa is a unique pre-breeding material extracted from B. juncea (AABB; 2n = 36). Population structure analysis, using DArT genotypes established derived B. rapa as a genetic resource distinct from natural B. rapa. Genome wide association studies facilitated detection of many trait associated SNPs. Chromosomes A03, A05 and A09 harboured majority of these. Functional annotation of the associated SNPs and surrounding genome space(s) helped to predict 43 candidate genes. Many of these were predicted under specific day-length conditions. Important among these were the genes encoding floral meristem identity (SPL3, SPL15, AP3, BAM2), photoperiodic responses (COL2, AGL18, SPT, NF-YC4), gibberellic acid biosynthesis (GA1) and regulation of flowering (EBS). Some of the predicted genes were detected for DR subpanel alone. Genes controlling hormones, auxins and gibberellins appeared important for the regulation of plant height. Many of the significant SNPs were located on chromosomes harbouring previously reported QTLs and candidate genes. The identified loci may be used for marker-assisted selection after due validation.
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Affiliation(s)
- Snehdeep Kaur
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Chhaya Atri
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Javed Akhatar
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Meenakshi Mittal
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Rimaljeet Kaur
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Surinder S Banga
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India.
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Blumenthal DM, LeCain DR, Porensky LM, Leger EA, Gaffney R, Ocheltree TW, Pilmanis AM. Local adaptation to precipitation in the perennial grass Elymus elymoides: Trade-offs between growth and drought resistance traits. Evol Appl 2021; 14:524-535. [PMID: 33664792 PMCID: PMC7896711 DOI: 10.1111/eva.13137] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 08/06/2020] [Accepted: 08/30/2020] [Indexed: 12/19/2022] Open
Abstract
Understanding local adaptation to climate is critical for managing ecosystems in the face of climate change. While there have been many provenance studies in trees, less is known about local adaptation in herbaceous species, including the perennial grasses that dominate arid and semiarid rangeland ecosystems. We used a common garden study to quantify variation in growth and drought resistance traits in 99 populations of Elymus elymoides from a broad geographic and climatic range in the western United States. Ecotypes from drier sites produced less biomass and smaller seeds, and had traits associated with greater drought resistance: small leaves with low osmotic potential and high integrated water use efficiency (δ13C). Seasonality also influenced plant traits. Plants from regions with relatively warm, wet summers had large seeds, large leaves, and low δ13C. Irrespective of climate, we also observed trade-offs between biomass production and drought resistance traits. Together, these results suggest that much of the phenotypic variation among E. elymoides ecotypes represents local adaptation to differences in the amount and timing of water availability. In addition, ecotypes that grow rapidly may be less able to persist under dry conditions. Land managers may be able to use this variation to improve restoration success by seeding ecotypes with multiple drought resistance traits in areas with lower precipitation. The future success of this common rangeland species will likely depend on the use of tools such as seed transfer zones to match local variation in growth and drought resistance to predicted climatic conditions.
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Affiliation(s)
| | - Daniel R. LeCain
- USDA‐ARS Rangeland Resources & Systems Research UnitFort CollinsCOUSA
| | | | | | - Rowan Gaffney
- USDA‐ARS Rangeland Resources & Systems Research UnitFort CollinsCOUSA
| | - Troy W. Ocheltree
- Department of Forest and Rangeland StewardshipColorado State UniversityFort CollinsCOUSA
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Kooyers NJ, Morioka KA, Colicchio JM, Clark KS, Donofrio A, Estill SK, Pascualy CR, Anderson IC, Hagler M, Cho C, Blackman BK. Population responses to a historic drought across the range of the common monkeyflower (Mimulus guttatus). AMERICAN JOURNAL OF BOTANY 2021; 108:284-296. [PMID: 33400274 DOI: 10.1002/ajb2.1589] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Accepted: 08/26/2020] [Indexed: 06/12/2023]
Abstract
PREMISE Due to climate change, more frequent and intense periodic droughts are predicted to increasingly pose major challenges to the persistence of plant populations. When a severe drought occurs over a broad geographical region, independent responses by individual populations provide replicated natural experiments for examining the evolution of drought resistance and the potential for evolutionary rescue. METHODS We used a resurrection approach to examine trait evolution in populations of the common monkeyflower, Mimulus guttatus, exposed to a record drought in California from 2011 to 2017. Specifically, we compared variation in traits related to drought escape and avoidance from seeds collected from 37 populations pre- and post-drought in a common garden. In a parallel experiment, we evaluated fitness in two populations, one which thrived and one which was nearly extirpated during the drought, under well-watered and dry-down conditions. RESULTS We observed substantial variation among populations in trait evolution. In the subset of populations where phenotypes changed significantly, divergence proceeded along trait correlations with some populations flowering rapidly with less vegetative tissue accumulation and others delaying flowering with greater vegetative tissue accumulation. The degree of trait evolution was only weakly correlated with drought intensity but strongly correlated with initial levels of standing variation. Fitness was higher in the post-drought than pre-drought accessions in both treatments for the thriving population, but lower in both treatments for the nearly extirpated population. CONCLUSIONS Together, our results indicate that evolutionary responses to drought are context dependent and reflect the standing genetic variation and genetic correlations present within populations.
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Affiliation(s)
- Nicholas J Kooyers
- Department of Biology, University of Louisiana, Lafayette, LA, 70503, USA
| | - Kelsie A Morioka
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Jack M Colicchio
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Kaitlyn S Clark
- Department of Integrative Biology, University of South Florida, Tampa, FL, 33620, USA
| | - Abigail Donofrio
- Department of Integrative Biology, University of South Florida, Tampa, FL, 33620, USA
| | - Shayne K Estill
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Catalina R Pascualy
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Ian C Anderson
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Megan Hagler
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Chloe Cho
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
| | - Benjamin K Blackman
- Department of Plant and Microbial Biology, University of California, Berkeley, CA, 94720, USA
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40
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Burnette TE, Eckhart VM. Evolutionary divergence of potential drought adaptations between two subspecies of an annual plant: Are trait combinations facilitated, independent, or constrained? AMERICAN JOURNAL OF BOTANY 2021; 108:309-319. [PMID: 33524185 PMCID: PMC7986167 DOI: 10.1002/ajb2.1607] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 10/14/2020] [Indexed: 05/17/2023]
Abstract
PREMISE Whether drought-adaptation mechanisms tend to evolve together, evolve independently, or evolve constrained by genetic architecture is incompletely resolved, particularly for water-relations traits besides gas exchange. We addressed this issue in two subspecies of Clarkia xantiana (Onagraceae), California winter annuals that separated approximately 65,000 years ago and are adapted, partly by differences in flowering time, to native ranges differing in precipitation. METHODS In these subspecies and in recombinant inbred lines (RILs) from a cross between them, we scored traits related to drought adaptation (timing of seed germination and of flowering, succulence, pressure-volume curve variables) in common environments. RESULTS The subspecies native to more arid environments (parviflora) exhibited slower seed germination in saturated conditions, earlier flowering, and greater succulence, likely indicating superior drought avoidance, drought escape, and dehydration resistance via water storage. The other subspecies (xantiana) had lower osmotic potential at full turgor and lower water potential at turgor loss, implying superior dehydration tolerance. Genetic correlations among RILs suggest facilitated evolution of some trait combinations and independence of others. Where genetic correlations exist, subspecies differences fell along them, with the exception of differences in succulence and turgor loss point. In that case, subspecies difference overcame genetic correlations, possibly reflecting strong selection and/or antagonistic genetic correlations with other traits. CONCLUSIONS Clarkia xantiana subspecies' differ in multiple mechanisms of drought adaptation. Genetic architecture generally does not seem to have constrained the evolution of these mechanisms, and it may have facilitated the evolution of some of trait combinations.
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Affiliation(s)
- Timothy E. Burnette
- Division of Biological SciencesUniversity of MontanaMissoulaMT59802USA
- Department of BiologyGrinnell CollegeGrinnellIA50112USA
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Singh KP, Kumari P, Rai PK. Current Status of the Disease-Resistant Gene(s)/QTLs, and Strategies for Improvement in Brassica juncea. FRONTIERS IN PLANT SCIENCE 2021; 12:617405. [PMID: 33747001 PMCID: PMC7965955 DOI: 10.3389/fpls.2021.617405] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 02/08/2021] [Indexed: 05/15/2023]
Abstract
Brassica juncea is a major oilseed crop in tropical and subtropical countries, especially in south-east Asia like India, China, Bangladesh, and Pakistan. The widespread cultivation of genetically similar varieties tends to attract fungal pathogens which cause heavy yield losses in the absence of resistant sources. The conventional disease management techniques are often expensive, have limited efficacy, and cause additional harm to the environment. A substantial approach is to identify and use of resistance sources within the Brassica hosts and other non-hosts to ensure sustainable oilseed crop production. In the present review, we discuss six major fungal pathogens of B. juncea: Sclerotinia stem rot (Sclerotinia sclerotiorum), Alternaria blight (Alternaria brassicae), White rust (Albugo candida), Downy mildew (Hyaloperonospora parasitica), Powdery mildew (Erysiphe cruciferarum), and Blackleg (Leptoshaeria maculans). From discussing studies on pathogen prevalence in B. juncea, the review then focuses on highlighting the resistance sources and quantitative trait loci/gene identified so far from Brassicaceae and non-filial sources against these fungal pathogens. The problems in the identification of resistance sources for B. juncea concerning genome complexity in host subpopulation and pathotypes were addressed. Emphasis has been laid on more elaborate and coordinated research to identify and deploy R genes, robust techniques, and research materials. Examples of fully characterized genes conferring resistance have been discussed that can be transformed into B. juncea using advanced genomics tools. Lastly, effective strategies for B. juncea improvement through introgression of novel R genes, development of pre-breeding resistant lines, characterization of pathotypes, and defense-related secondary metabolites have been provided suggesting the plan for the development of resistant B. juncea.
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Affiliation(s)
- Kaushal Pratap Singh
- ICAR-Directorate of Rapeseed-Mustard Research, Bharatpur, India
- *Correspondence: Kaushal Pratap Singh,
| | - Preetesh Kumari
- Genetics Division, ICAR-Indian Agricultural Research Institute, New Delhi, India
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Roeber VM, Schmülling T, Cortleven A. The Photoperiod: Handling and Causing Stress in Plants. FRONTIERS IN PLANT SCIENCE 2021; 12:781988. [PMID: 35145532 PMCID: PMC8821921 DOI: 10.3389/fpls.2021.781988] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 12/13/2021] [Indexed: 05/05/2023]
Abstract
The photoperiod, which is the length of the light period in the diurnal cycle of 24 h, is an important environmental signal. Plants have evolved sensitive mechanisms to measure the length of the photoperiod. Photoperiod sensing enables plants to synchronize developmental processes, such as the onset of flowering, with a specific time of the year, and enables them to alleviate the impact of environmental stresses occurring at the same time every year. During the last years, the importance of the photoperiod for plant responses to abiotic and biotic stresses has received increasing attention. In this review, we summarize the current knowledge on the signaling pathways involved in the photoperiod-dependent regulation of responses to abiotic (freezing, drought, osmotic stress) and biotic stresses. A central role of GIGANTEA (GI), which is a key player in the regulation of photoperiod-dependent flowering, in stress responses is highlighted. Special attention is paid to the role of the photoperiod in regulating the redox state of plants. Furthermore, an update on photoperiod stress, which is caused by sudden alterations in the photoperiod, is given. Finally, we will review and discuss the possible use of photoperiod-induced stress as a sustainable resource to enhance plant resistance to biotic stress in horticulture.
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Martignago D, Siemiatkowska B, Lombardi A, Conti L. Abscisic Acid and Flowering Regulation: Many Targets, Different Places. Int J Mol Sci 2020; 21:ijms21249700. [PMID: 33353251 PMCID: PMC7767233 DOI: 10.3390/ijms21249700] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 12/14/2020] [Accepted: 12/17/2020] [Indexed: 12/13/2022] Open
Abstract
Plants can react to drought stress by anticipating flowering, an adaptive strategy for plant survival in dry climates known as drought escape (DE). In Arabidopsis, the study of DE brought to surface the involvement of abscisic acid (ABA) in controlling the floral transition. A central question concerns how and in what spatial context can ABA signals affect the floral network. In the leaf, ABA signaling affects flowering genes responsible for the production of the main florigen FLOWERING LOCUS T (FT). At the shoot apex, FD and FD-like transcription factors interact with FT and FT-like proteins to regulate ABA responses. This knowledge will help separate general and specific roles of ABA signaling with potential benefits to both biology and agriculture.
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Peschel AR, Boehm EL, Shaw RG. Estimating the capacity of Chamaecrista fasciculata for adaptation to change in precipitation. Evolution 2020; 75:73-85. [PMID: 33215695 DOI: 10.1111/evo.14131] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 09/21/2020] [Accepted: 10/21/2020] [Indexed: 11/30/2022]
Abstract
Adaptation through natural selection may be the only means by which small and fragmented plant populations will persist through present day environmental change. A population's additive genetic variance for fitness (VA (W)) represents its immediate capacity to adapt to the environment in which it exists. We evaluated this property for a population of the annual legume Chamaecrista fasciculata through a quantitative genetic experiment in the tallgrass prairie region of the Midwestern United States, where changing climate is predicted to include more variability in rainfall. To reduce incident rainfall, relative to controls receiving ambient rain, we deployed rain exclusion shelters. We found significant VA (W) in both treatments. We also detected a significant genotype-by-treatment interaction for fitness, which suggests that the genetic basis of the response to natural selection will differ depending on precipitation. For the trait-specific leaf area, we detected maladaptive phenotypic plasticity and an interaction between genotype and environment. Selection for thicker leaves was detected with increased precipitation. These results indicate capacity of this population of C. fasciculata to adapt in situ to environmental change.
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Affiliation(s)
- Anna Riba Peschel
- Department of Fisheries, Wildlife, and Conservation Biology, University of Minnesota, St. Paul, Minnesota, 55108.,Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108
| | - Emma Lauren Boehm
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108.,Current Address: Department of Biology, Indiana University Bloomington, Bloomington, Indiana, 47405
| | - Ruth Geyer Shaw
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108
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Xia J, Wang J, Niu S. Research challenges and opportunities for using big data in global change biology. GLOBAL CHANGE BIOLOGY 2020; 26:6040-6061. [PMID: 32799353 DOI: 10.1111/gcb.15317] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 07/13/2020] [Indexed: 06/11/2023]
Abstract
Global change biology has been entering a big data era due to the vast increase in availability of both environmental and biological data. Big data refers to large data volume, complex data sets, and multiple data sources. The recent use of such big data is improving our understanding of interactions between biological systems and global environmental changes. In this review, we first explore how big data has been analyzed to identify the general patterns of biological responses to global changes at scales from gene to ecosystem. After that, we investigate how observational networks and space-based big data have facilitated the discovery of emergent mechanisms and phenomena on the regional and global scales. Then, we evaluate the predictions of terrestrial biosphere under global changes by big modeling data. Finally, we introduce some methods to extract knowledge from big data, such as meta-analysis, machine learning, traceability analysis, and data assimilation. The big data has opened new research opportunities, especially for developing new data-driven theories for improving biological predictions in Earth system models, tracing global change impacts across different organismic levels, and constructing cyberinfrastructure tools to accelerate the pace of model-data integrations. These efforts will uncork the bottleneck of using big data to understand biological responses and adaptations to future global changes.
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Affiliation(s)
- Jianyang Xia
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Jing Wang
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Research Center for Global Change and Ecological Forecasting, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Shuli Niu
- Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
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Wang Y, Lu Y, Guo Z, Ding Y, Ding C. RICE CENTRORADIALIS 1, a TFL1-like Gene, Responses to Drought Stress and Regulates Rice Flowering Transition. RICE (NEW YORK, N.Y.) 2020; 13:70. [PMID: 32970268 PMCID: PMC7516004 DOI: 10.1186/s12284-020-00430-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Accepted: 09/17/2020] [Indexed: 05/11/2023]
Abstract
BACKGROUND The initiation of flowering transition in rice (Oryza sativa) is a complex process regulated by genes and environment. In particular, drought can interfere with flowering; therefore, many plants hasten this process to shorten their life cycle under water scarcity, and this is known as drought-escape response. However, rice has other strategies; for example, drought stress can delay flowering instead of accelerating it. RICE CENTRORADIALIS 1 (RCN1) is a TERMINAL FLOWER-like gene that influences rice flowering transition and spike differentiation. It interacts with 14-3-3 proteins and transcription factor OsFD1 to form a florigen repression complex that suppresses flowering transition in rice. RESULTS In this study, we explored the role of RCN1 in the molecular pathway of drought-regulated flowering transition. The rcn1 mutant plants displayed early heading under both normal water and drought stress conditions, and they were more insensitive to drought stress than the wild-type plants. Abscisic acid (ABA) signaling-mediated drought-induced RCN1 is involved in this process. CONCLUSIONS Thus, RCN1 plays an important role in the process of drought stress inhibiting flowering transition. It may worked by suppressing the protein function rather than transcription of HEADING DATE 3a.
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Affiliation(s)
- Yan Wang
- College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- College of Biology and Environmental Sciences, Jishou University, Jishou, 416000, People's Republic of China
| | - Yuyang Lu
- College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Ziyu Guo
- College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Yanfeng Ding
- College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
- Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China
| | - Chengqiang Ding
- College of Agriculture, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
- Key Laboratory of Crop Physiology Ecology and Production Management, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
- Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, 210095, People's Republic of China.
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Hamann E, Pauli CS, Joly-Lopez Z, Groen SC, Rest JS, Kane NC, Purugganan MD, Franks SJ. Rapid evolutionary changes in gene expression in response to climate fluctuations. Mol Ecol 2020; 30:193-206. [PMID: 32761923 PMCID: PMC7818422 DOI: 10.1111/mec.15583] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 07/20/2020] [Accepted: 07/30/2020] [Indexed: 12/12/2022]
Abstract
There is now abundant evidence of rapid evolution in natural populations, but the genetic mechanisms of these changes remain unclear. One possible route to rapid evolution is through changes in the expression of genes that influence traits under selection. We examined contemporary evolutionary gene expression changes in plant populations responding to environmental fluctuations. We compared genome‐wide gene expression, using RNA‐seq, in two populations of Brassica rapa collected over four time points between 1997 and 2014, during which precipitation in southern California fluctuated dramatically and phenotypic and genotypic changes occurred. By combining transcriptome profiling with the resurrection approach, we directly examined evolutionary changes in gene expression over time. For both populations, we found a substantial number of differentially expressed genes between generations, indicating rapid evolution in the expression of many genes. Using existing gene annotations, we found that many changes occurred in genes involved in regulating stress responses and flowering time. These appeared related to the fluctuations in precipitation and were potentially adaptive. However, the evolutionary changes in gene expression differed across generations within and between populations, indicating largely independent evolutionary trajectories across populations and over time. Our study provides strong evidence for rapid evolution in gene expression, and indicates that changes in gene expression can be one mechanism of rapid evolutionary responses to selection episodes. This study also illustrates that combining resurrection studies with transcriptomics is a powerful approach for investigating evolutionary changes at the gene regulatory level, and will provide new insights into the genetic basis of contemporary evolution. see also the Perspective by Emily B. Josephs.
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Affiliation(s)
- Elena Hamann
- Department of Biological Sciences, Fordham University, Bronx, NY, USA.,Department of Genetics and Odum School of Ecology, University of Georgia, Athens, GA, USA
| | - Christopher S Pauli
- Department of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, USA
| | - Zoé Joly-Lopez
- Department of Biology, Center for Genomics and Systems Biology, New York University, NY, USA
| | - Simon C Groen
- Department of Biology, Center for Genomics and Systems Biology, New York University, NY, USA
| | - Joshua S Rest
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, NY, USA
| | - Nolan C Kane
- Department of Ecology and Evolution, The University of Colorado at Boulder, Boulder, CO, USA
| | - Michael D Purugganan
- Department of Biology, Center for Genomics and Systems Biology, New York University, NY, USA
| | - Steven J Franks
- Department of Biological Sciences, Fordham University, Bronx, NY, USA
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Metz J, Lampei C, Bäumler L, Bocherens H, Dittberner H, Henneberg L, de Meaux J, Tielbörger K. Rapid adaptive evolution to drought in a subset of plant traits in a large-scale climate change experiment. Ecol Lett 2020; 23:1643-1653. [PMID: 32851791 DOI: 10.1111/ele.13596] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Accepted: 07/20/2020] [Indexed: 12/17/2022]
Abstract
Rapid evolution of traits and of plasticity may enable adaptation to climate change, yet solid experimental evidence under natural conditions is scarce. Here, we imposed rainfall manipulations (+30%, control, -30%) for 10 years on entire natural plant communities in two Eastern Mediterranean sites. Additional sites along a natural rainfall gradient and selection analyses in a greenhouse assessed whether potential responses were adaptive. In both sites, our annual target species Biscutella didyma consistently evolved earlier phenology and higher reproductive allocation under drought. Multiple arguments suggest that this response was adaptive: it aligned with theory, corresponding trait shifts along the natural rainfall gradient, and selection analyses under differential watering in the greenhouse. However, another seven candidate traits did not evolve, and there was little support for evolution of plasticity. Our results provide compelling evidence for rapid adaptive evolution under climate change. Yet, several non-evolving traits may indicate potential constraints to full adaptation.
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Affiliation(s)
- Johannes Metz
- Plant Ecology & Nature Conservation, Institute of Biology & Chemistry, University of Hildesheim, Hildesheim, Germany.,Plant Ecology Group, Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Christian Lampei
- Biodiversity and Ecosystem Research, Institute of Landscape Ecology, University of Münster, Münster, Germany
| | - Laura Bäumler
- Plant Ecology Group, Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Hervé Bocherens
- Senckenberg Centre for Human Evolution and Palaeoenvironment, and Department of Geosciences, Biogeology, University of Tübingen, Tübingen, Germany
| | - Hannes Dittberner
- Plant Molecular Ecology, Institute of Botany, University of Cologne, Cologne, Germany
| | - Lorenz Henneberg
- Plant Ecology Group, Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
| | - Juliette de Meaux
- Plant Molecular Ecology, Institute of Botany, University of Cologne, Cologne, Germany
| | - Katja Tielbörger
- Plant Ecology Group, Institute of Evolution and Ecology, University of Tübingen, Tübingen, Germany
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Shim JS, Jang G. Environmental Signal-Dependent Regulation of Flowering Time in Rice. Int J Mol Sci 2020; 21:ijms21176155. [PMID: 32858992 PMCID: PMC7504671 DOI: 10.3390/ijms21176155] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 08/23/2020] [Accepted: 08/24/2020] [Indexed: 01/11/2023] Open
Abstract
The transition from the vegetative to the reproductive stage of growth is a critical event in the lifecycle of a plant and is required for the plant’s reproductive success. Flowering time is tightly regulated by an internal time-keeping system and external light conditions, including photoperiod, light quality, and light quantity. Other environmental factors, such as drought and temperature, also participate in the regulation of flowering time. Thus, flexibility in flowering time in response to environmental factors is required for the successful adaptation of plants to the environment. In this review, we summarize our current understanding of the molecular mechanisms by which internal and environmental signals are integrated to regulate flowering time in Arabidopsis thaliana and rice (Oryza sativa).
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Raman H, Raman R, McVittie B, Borg L, Diffey S, Singh Yadav A, Balasubramanian S, Farquhar G. Genetic and physiological bases for variation in water use efficiency in canola. Food Energy Secur 2020. [DOI: 10.1002/fes3.237] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Harsh Raman
- NSW Department of Primary Industries Wagga Wagga Agricultural Institute Wagga Wagga NSW Australia
| | - Rosy Raman
- NSW Department of Primary Industries Wagga Wagga Agricultural Institute Wagga Wagga NSW Australia
| | - Brett McVittie
- NSW Department of Primary Industries Wagga Wagga Agricultural Institute Wagga Wagga NSW Australia
| | - Lauren Borg
- University of Wollongong Wollongong NSW Australia
| | | | | | | | - Graham Farquhar
- Research School of Biology Australian National University Canberra ACT Australia
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